Citrus Sinensis ID: 023914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Secondary Structure (PSIPRED)
ccccEEEcccccccEEEEEEEcccccccccEEEEccccccHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEccccccEEEEEEEEccEEEEEEccccccccEEEcccccccccccHHHHHHHHHHHHcccEEEEccEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccEEEEEcccccccccEEEEEEEcccccccEEEcccccccccEEEcccccccccEccccEEEccccccccccccccccccccccccccccEccEcccccccEEEEcccccccccEccccccEEEEEcccEEEEEEEccccEEEEEEccccccccccEccccHccccccHHHHHHHHHHHHHccEEEEcccEEEEEcccccEEEEEEEEEccccccccccccHEEEcccHccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAvstnplpystarrheivsktdslvspafltrrtrcfrasrvcatrsesnqdatsshpssaavhsaGNVLKIsfcqwcggqtkhevphgeEKMRAICTVCgkiayqnpkMVVGCLIEHDKKILLCKrkiepsyglwtlpagymeiGESAAEGAIRETWEEARADvevqspfaqldipriGQIYIIFLAklkrphfspgpessecrlfaldeipfdslafSSISVTLQLVRFYFEHMTLICLSN
Flexible Loop (DISEMBL)
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARrheivsktdslvspafltrrtrcfrASRVCATrsesnqdatsshpSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEvqspfaqldiprIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Low Complexity Region (SEG)
MLKSVQilgsssgflslilkksHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVCATRSESNQDatsshpssaavhsaGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Disordered region (IsUnstruct)
***********SGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVC**********************AGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHF*******ECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICL**
Disordered Region (DISOPRED)
***S***LGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVCAT*********SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI****
Disordered Region (DISEMBL)
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRV**********************SAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Disordered Region (DISPRO)
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVC*************************VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLICLSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
P93740	280	Nudix hydrolase 23, chlor	yes	no	0.890	0.875	0.609	1e-81
Q58549	169	ADP-ribose pyrophosphatas	yes	no	0.454	0.739	0.320	4e-10
C0SPC3	208	Putative ADP-ribose pyrop	yes	no	0.447	0.591	0.298	1e-05
Q9Y7J0	376	Probable NADH pyrophospha	yes	no	0.389	0.284	0.3	2e-05
C5BHE7	257	NADH pyrophosphatase OS=E	yes	no	0.825	0.883	0.228	4e-05
B7VM66	269	NADH pyrophosphatase OS=V	yes	no	0.607	0.620	0.248	0.0001
Q7N961	257	NADH pyrophosphatase OS=P	no	no	0.549	0.587	0.254	0.0002
Q6DAL8	260	NADH pyrophosphatase OS=E	yes	no	0.829	0.876	0.215	0.0003
C6DHS8	260	NADH pyrophosphatase OS=P	yes	no	0.829	0.876	0.211	0.0004
A5UGU3	264	NADH pyrophosphatase OS=H	yes	no	0.305	0.318	0.3	0.0005

>sp|P93740|NUD23_ARATH Nudix hydrolase 23, chloroplastic OS=Arabidopsis thaliana GN=NUDT23 PE=1 SV=2

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/269 (60%), Positives = 192/269 (71%), Gaps = 24/269 (8%)

Query: 1   MLKSVQILGSSSGF-LSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSP 59
           MLK+VQILG SSG  +S  L K+  S                  +    + S T S  SP
Sbjct: 1   MLKAVQILGWSSGLTISQRLTKTRKSSTV------------SFISSSLNLSSVTSS--SP 46

Query: 60  AFLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVP 119
               RR   F+ +R+ ++   S  D  ++ P+  +V SAG+V KI FCQWCGG TKHE+P
Sbjct: 47  ----RRIFSFKPTRMSSSLPGS--DPVANSPTFVSVQSAGDVRKIKFCQWCGGPTKHEIP 100

Query: 120 HGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE 179
            GEEK+RAICT CGKIAYQNPKMVVGCLIEH+ K+LLCKR I+PS+GLWTLPAGY+E+GE
Sbjct: 101 DGEEKLRAICTHCGKIAYQNPKMVVGCLIEHEGKVLLCKRNIQPSHGLWTLPAGYLEVGE 160

Query: 180 SAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLF 239
           SAA+GA+RETWEEA A VEV SPFAQLDIP IGQ Y+IFLAKLK  HF+PGPES ECRLF
Sbjct: 161 SAAQGAMRETWEEAGATVEVISPFAQLDIPLIGQTYVIFLAKLKNLHFAPGPESLECRLF 220

Query: 240 ALDEIPFDSLAFSSISVTLQLVRFYFEHM 268
           ALDEIPFDSLAFSSI VTL L   Y E +
Sbjct: 221 ALDEIPFDSLAFSSIYVTLNL---YLEDL 246

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use FAD and ADP-ribose as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 8

>sp|Q58549|ADPP_METJA ADP-ribose pyrophosphatase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=nudF PE=1 SV=1

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 137 YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD 196
           Y +P + V  +IE D KILL KRK  P  G + LP G++E GE+  E  +RE  EE    
Sbjct: 38  YLHPAVAVDGIIEKDNKILLIKRKNNPFKGCFALPGGFVECGETVEEAVVREIKEETGLI 97

Query: 197 VEVQSPFAQLD----IPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFS 252
            +V+S           PR   I I+F+  +       G ++ E   F L+ +P   LAF 
Sbjct: 98  PKVKSLLGVYSSPDRDPRGHVISIVFILDVIGGELKAGDDAKEAEFFDLNNLP--KLAFD 155

Query: 253 SISVTLQLVRF 263
              +    +R+
Sbjct: 156 HEKIIKDYMRW 166

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|C0SPC3|YJHB_BACSU Putative ADP-ribose pyrophosphatase YjhB OS=Bacillus subtilis (strain 168) GN=yjhB PE=3 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 11/134 (8%)

Query: 120 HGEEKMRAICTVC-GKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIG 178
           + E+ +  I  +  G+  Y  PK  V   +  + +ILL + K +    LW+LP G+ EIG
Sbjct: 49  YSEKDIEVITDLWQGEKGYPTPKADVRGAVFRENQILLVREKHD---ELWSLPGGFCEIG 105

Query: 179 ESAAEGAIRETWEEARADVEVQSPFAQLD------IPRIGQIYIIFLA-KLKRPHFSPGP 231
            S AE  ++E  EE+  D E     A LD       P+    Y IF+A  +       G 
Sbjct: 106 LSPAENVVKEIKEESGYDTEPSRLLAVLDSHKHSHPPQPYHYYKIFIACSMTDGQGETGI 165

Query: 232 ESSECRLFALDEIP 245
           E++    F  D +P
Sbjct: 166 ETNHAAFFPEDRLP 179

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y7J0|NPY1_SCHPO Probable NADH pyrophosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.03c PE=3 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 88  SHPSSAAVHSAGNVLK-ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI----------- 135
           S   S A   A ++L  IS  ++C G  K  +P     M     VC  +           
Sbjct: 159 SASDSGACAFARSILDWISRYRFCPGCGKRNIP----TMGGTKLVCSDVLLNDDSNCPSK 214

Query: 136 ----AYQNPKM---VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRE 188
                YQ P+    V+  ++ HD + +L  R +    GL+   AG++E GES  E  +RE
Sbjct: 215 KGINNYQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESLEEAVVRE 274

Query: 189 TWEEARADVE 198
           T+EE+  DVE
Sbjct: 275 TYEESGVDVE 284

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|C5BHE7|NUDC_EDWI9 NADH pyrophosphatase OS=Edwardsiella ictaluri (strain 93-146) GN=nudC PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 18/245 (7%)

Query: 32  VAVSTNPLPYSTARRHEIVSKTDSLVS-----PAFLTRRTRCFRASRVCATRSESNQDAT 86
           + +    LPY +A +  +V K    +      P +L   T       + + R   + D  
Sbjct: 21  IWLPEGELPYGSAAQWHLVGKMAYRIGEWQGMPVWLLCLTY---PQDMASVRQLIDADRG 77

Query: 87  SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGC 146
               +   V  A       FC +CG    H +  G+++   +C  C +  Y      +  
Sbjct: 78  LFQLAGRGVQLAEFFQSHRFCGYCG----HPMHAGQQEWVRLCAHCQQRYYPQIAPCIIV 133

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206
            I  D  ILL +     + G++T+ AG++E+GE+  + A RE +EE+R  V+        
Sbjct: 134 AIRRDDHILLARHNRHRN-GIYTVLAGFVEVGETLEQAAAREIFEESRLQVKNLRYVTSQ 192

Query: 207 DIPRIGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEI----PFDSLAFSSISVTLQLV 261
             P    + + FLA          P E  E   +  D +    P  ++A   I  T+ L 
Sbjct: 193 PWPFPHSLMMAFLADYAAGDLCHDPKELQEADWYRYDRLPQLPPVGTVARRLIEDTVALC 252

Query: 262 RFYFE 266
           R   E
Sbjct: 253 RVQHE 257

Edwardsiella ictaluri (strain 93-146) (taxid: 634503)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|B7VM66|NUDC_VIBSL NADH pyrophosphatase OS=Vibrio splendidus (strain LGP32) GN=nudC PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 10/177 (5%)

Query: 91  SSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEH 150
           +S A+        + FC  CGG  ++ + H +  M+  C  C  + Y      +   + +
Sbjct: 87  ASKAIQYGHMTQSMRFCPQCGG--RNHLNHNQVAMQ--CGDCRTLHYPRIFPCIIVAVRN 142

Query: 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR 210
           D KILL +     + G++T+ AG++E+GE+  +   RE  EE   DV     F       
Sbjct: 143 DNKILLAQHPRHKT-GMYTVIAGFLEVGETLEQCVAREVKEETGIDVSNIRYFGSQPWAF 201

Query: 211 IGQIYIIFLAKLKRPHFSPG-PESSECRLFAL----DEIPFDSLAFSSISVTLQLVR 262
              + + FLA        P   E S+ + F +    D  P  ++A   I  T+  +R
Sbjct: 202 PSSMMMAFLADYAGGTLKPDYSELSDAQWFDVTSLPDVAPVGTIARQLIENTVDDIR 258

Vibrio splendidus (strain LGP32) (taxid: 575788)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q7N961|NUDC_PHOLL NADH pyrophosphatase OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=nudC PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN--PKMVVGCLIEHDKKILLCKRKIE 162
            +C +CG +  H V     +   +C  C +  Y    P ++VG  I  D  ILL + +  
Sbjct: 98  QYCGYCGNEMHHSV----SEWACLCHHCHERYYPQIAPCIIVG--IRRDDHILLAQHQHH 151

Query: 163 PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKL 222
              G++T+ AG++E+GE+  E  +RE  EE+   +      A    P    + + FLA  
Sbjct: 152 RG-GVYTVLAGFVEVGETLEEAVVREVMEESNIKIRNLRYVASQPWPFPHSLMMAFLADY 210

Query: 223 KRPHFSPGP-ESSECRLFALDEIPF----DSLAFSSISVTLQLVR 262
                   P E      +  D++P     +++A   I  T+ L R
Sbjct: 211 DSGEIRHDPQELISADWYHYDQLPLIPPHNTIARRLIEDTIVLCR 255

Photorhabdus luminescens subsp. laumondii (strain TT01) (taxid: 243265)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6DAL8|NUDC_ERWCT NADH pyrophosphatase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=nudC PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 18/246 (7%)

Query: 32  VAVSTNPLPYSTARRHEIVSKTDSLVS-----PAFLTRRTRCFRASRVCATRSESNQDAT 86
           + +    LP  TA    +  KT   +      PA+L  + R    + + + R   +QD  
Sbjct: 21  IWMPQGELPRGTATEWSLQGKTARQIGEWQGQPAWLVCQGR---DTDMASVRQLLDQDVG 77

Query: 87  SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGC 146
               +   V  A       FC +CG    HE+   + ++  +C  C +  Y      +  
Sbjct: 78  LFQLAGRGVQLAEFYRSHRFCGYCG----HEMVRSKTELACLCHHCKERYYPQIAPCIIV 133

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206
            I   ++ILL +        ++T+ AG++E+GE+  +  +RE  EE++  ++     +  
Sbjct: 134 AIRRGEEILLAQHNRHRG-NMYTVLAGFVEVGETLEQTVVREVMEESQIQIKNLRYVSSQ 192

Query: 207 DIPRIGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEIPF----DSLAFSSISVTLQLV 261
             P    + + F+A          P E  +   F  D++P      ++A   I  T+ L 
Sbjct: 193 PWPFPHSLMMAFMADYAGGDIKHDPKELRDAGWFRYDQLPQLPPPGTVARRLIEDTVVLC 252

Query: 262 RFYFEH 267
           R Y E+
Sbjct: 253 RAYHEN 258

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|C6DHS8|NUDC_PECCP NADH pyrophosphatase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=nudC PE=3 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 18/246 (7%)

Query: 32  VAVSTNPLPYSTARRHEIVSKTDSLVS-----PAFLTRRTRCFRASRVCATRSESNQDAT 86
           + +    LP  TA +  +  KT   +      P +L  + R    + + + R   +QD  
Sbjct: 21  IWLPQGELPCGTATKWSLQGKTARQIGEWQEQPVWLVCQGR---DTDMASVRQLLDQDVG 77

Query: 87  SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGC 146
               +   V  A       FC +CG    HE+   + ++  +C  C +  Y      +  
Sbjct: 78  LFQLAGRGVQLAEFYRSHRFCGYCG----HEMVRSKTELACLCHHCKERYYPQIAPCIIV 133

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206
            I   ++ILL +        ++T+ AG++E+GE+  +  +RE  EE++  ++     +  
Sbjct: 134 AIRRGEEILLAQHNRHRG-NMYTVLAGFVEVGETLEQTVVREVMEESQVQIKNLRYVSSQ 192

Query: 207 DIPRIGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEIPF----DSLAFSSISVTLQLV 261
             P    + + F+A+         P E  +   F  D++P      ++A   I  T+ L 
Sbjct: 193 PWPFPHSLMMAFMAEYAGGEIKHDPKELRDAGWFRYDQLPQLPPPGTVARRLIEDTVVLC 252

Query: 262 RFYFEH 267
           R Y E+
Sbjct: 253 RAYHEN 258

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|A5UGU3|NUDC_HAEIG NADH pyrophosphatase OS=Haemophilus influenzae (strain PittGG) GN=nudC PE=3 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN--PKMVVGCLIEHDKKILLCKRKIEP 163
           FC  CG    H+    ++++   CT CG   Y    P ++V     H+  +   KR   P
Sbjct: 98  FCGKCG----HKTQQTQDELAVQCTHCGYQTYPVICPSIIVAVRRGHEILLANHKRHYSP 153

Query: 164 SYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
           + G++T  AG++E+GE+  +   RE +EE 
Sbjct: 154 NGGIYTTLAGFVEVGETFEQAVQREVFEET 183

Haemophilus influenzae (strain PittGG) (taxid: 374931)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
225441459	291	PREDICTED: nudix hydrolase 23, chloropla	0.901	0.852	0.676	4e-90
255579751	296	mutt/nudix hydrolase, putative [Ricinus	0.927	0.861	0.652	1e-87
147790736	582	hypothetical protein VITISV_009633 [Viti	0.749	0.353	0.734	7e-85
297739830	237	unnamed protein product [Vitis vinifera]	0.705	0.818	0.775	4e-83
449437571	306	PREDICTED: nudix hydrolase 23, chloropla	0.930	0.836	0.612	5e-83
297827873	283	hypothetical protein ARALYDRAFT_483292 [	0.905	0.879	0.615	4e-81
21593406	280	unknown [Arabidopsis thaliana]	0.876	0.860	0.600	1e-80
18405878	280	nudix hydrolase 23 [Arabidopsis thaliana	0.890	0.875	0.609	6e-80
357509957	267	Nudix hydrolase [Medicago truncatula] gi	0.636	0.655	0.764	4e-78
224139790	215	predicted protein [Populus trichocarpa]	0.574	0.734	0.835	4e-77

>gi|225441459|ref|XP_002275478.1| PREDICTED: nudix hydrolase 23, chloroplastic-like [Vitis vinifera]

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 178/263 (67%), Positives = 206/263 (78%), Gaps = 15/263 (5%)

Query: 1   MLKSVQILGSSSGFLSLILKKSHNSC-YGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSP 59
           MLK++QILGSSS F+S   K  HNSC + +   + S++  P  T           SLV P
Sbjct: 1   MLKAIQILGSSSVFVSQRWK-YHNSCGFSIISCSCSSSRTPTMT-----------SLVMP 48

Query: 60  AFLTRRTRCFRASRVCATRSESNQDA--TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHE 117
              TR+ RCFRA R    R+ESN DA  +SS  SSA+V S G+ LKI+FCQWCGG TKH+
Sbjct: 49  TSPTRKMRCFRAFRASTIRAESNPDAPSSSSASSSASVQSTGSTLKINFCQWCGGPTKHD 108

Query: 118 VPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEI 177
           +P GEEK+RAICT+CGKI YQNPKMVVGCLI H+ K+LLC+RKI+PSYG WTLPAGY+EI
Sbjct: 109 IPEGEEKIRAICTLCGKITYQNPKMVVGCLIAHENKVLLCQRKIQPSYGRWTLPAGYLEI 168

Query: 178 GESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECR 237
           GESAAEGAIRETWEEA ADVEVQSPFAQLDIP IGQ YIIFL KLK+PHFSPGPES +CR
Sbjct: 169 GESAAEGAIRETWEEAGADVEVQSPFAQLDIPLIGQTYIIFLGKLKKPHFSPGPESLDCR 228

Query: 238 LFALDEIPFDSLAFSSISVTLQL 260
           LFALD+IPFDSLAFSS+ VTL+L
Sbjct: 229 LFALDDIPFDSLAFSSMLVTLKL 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579751|ref|XP_002530714.1| mutt/nudix hydrolase, putative [Ricinus communis] gi|223529728|gb|EEF31668.1| mutt/nudix hydrolase, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/262 (65%), Positives = 200/262 (76%), Gaps = 7/262 (2%)

Query: 1   MLKSVQILG-SSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSK-TDSLVS 58
           MLK++Q L  SSSGF++   K   ++   L+ V  STNPL YST R+    +K T+  +S
Sbjct: 1   MLKAIQNLALSSSGFVAYRWKPYPHATSSLTIV--STNPLSYSTHRKGPTPAKPTNVFLS 58

Query: 59  PAFLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEV 118
           P  + + T C    R  +TRSES  D   S  SS AV SA +V  I FCQWCGG  KHE+
Sbjct: 59  PLSIRKATICLTPIRAHSTRSESKMDRPPS--SSVAVRSA-HVRNIKFCQWCGGAAKHEI 115

Query: 119 PHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIG 178
           P GEEK+RAICTVCGKIAYQNPKMVVGCLIEHD K+LLCKR I+PSYGLWTLPAGY+E+G
Sbjct: 116 PEGEEKLRAICTVCGKIAYQNPKMVVGCLIEHDNKVLLCKRNIQPSYGLWTLPAGYLEMG 175

Query: 179 ESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRL 238
           ESAAEGA+RETWEEA A+VEV SPFA LDIP IGQ YIIFLA+LK+PHFSPG ES EC+L
Sbjct: 176 ESAAEGAMRETWEEAGAEVEVVSPFAHLDIPLIGQTYIIFLARLKKPHFSPGAESLECQL 235

Query: 239 FALDEIPFDSLAFSSISVTLQL 260
           F+LD+IPFDSLAFSS+ VTL L
Sbjct: 236 FSLDDIPFDSLAFSSMLVTLNL 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790736|emb|CAN63573.1| hypothetical protein VITISV_009633 [Vitis vinifera]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 158/215 (73%), Positives = 178/215 (82%), Gaps = 9/215 (4%)

Query: 55  SLVSPAFLTRRTRCFRASRVCATRSESNQDA--TSSHPSSAAVHSAGNVLKISFCQWCGG 112
           SLV P   TR+ RCFRA R    R+ESN DA  +SS  SSA+V S G+ LKI+FCQWCGG
Sbjct: 21  SLVMPTSPTRKMRCFRAFRASTIRAESNPDAPSSSSASSSASVQSTGSTLKINFCQWCGG 80

Query: 113 QTKHEVPHGEEKMRAICTVCGKIAYQNPKMV-------VGCLIEHDKKILLCKRKIEPSY 165
            TKH++P GEEK+RAICT+CGKI YQNPKMV       VGCLI H+ K+LLC+RKI+PSY
Sbjct: 81  PTKHDIPEGEEKIRAICTLCGKITYQNPKMVGLIKAQVVGCLIAHENKVLLCQRKIQPSY 140

Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRP 225
           G WTLPAGY+EIGESAAEGAIRETWEEA ADVEVQSPFAQLDIP IGQ YIIFL KLK+P
Sbjct: 141 GRWTLPAGYLEIGESAAEGAIRETWEEAGADVEVQSPFAQLDIPLIGQTYIIFLGKLKKP 200

Query: 226 HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQL 260
           HFSPGPES +CRLFALD+IPFDSLAFSS+ VTL+L
Sbjct: 201 HFSPGPESLDCRLFALDDIPFDSLAFSSMLVTLKL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739830|emb|CBI30012.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 152/196 (77%), Positives = 171/196 (87%), Gaps = 2/196 (1%)

Query: 67  RCFRASRVCATRSESNQDA--TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEK 124
           RCFRA R    R+ESN DA  +SS  SSA+V S G+ LKI+FCQWCGG TKH++P GEEK
Sbjct: 2   RCFRAFRASTIRAESNPDAPSSSSASSSASVQSTGSTLKINFCQWCGGPTKHDIPEGEEK 61

Query: 125 MRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEG 184
           +RAICT+CGKI YQNPKMVVGCLI H+ K+LLC+RKI+PSYG WTLPAGY+EIGESAAEG
Sbjct: 62  IRAICTLCGKITYQNPKMVVGCLIAHENKVLLCQRKIQPSYGRWTLPAGYLEIGESAAEG 121

Query: 185 AIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEI 244
           AIRETWEEA ADVEVQSPFAQLDIP IGQ YIIFL KLK+PHFSPGPES +CRLFALD+I
Sbjct: 122 AIRETWEEAGADVEVQSPFAQLDIPLIGQTYIIFLGKLKKPHFSPGPESLDCRLFALDDI 181

Query: 245 PFDSLAFSSISVTLQL 260
           PFDSLAFSS+ VTL+L
Sbjct: 182 PFDSLAFSSMLVTLKL 197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437571|ref|XP_004136565.1| PREDICTED: nudix hydrolase 23, chloroplastic-like [Cucumis sativus] gi|449511340|ref|XP_004163930.1| PREDICTED: nudix hydrolase 23, chloroplastic-like [Cucumis sativus]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/271 (61%), Positives = 197/271 (72%), Gaps = 15/271 (5%)

Query: 1   MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPA 60
           MLKSV + G SSGF+S +LK +    +GL+FV+        S++        + S  +  
Sbjct: 1   MLKSVHLFGCSSGFVSNLLKPNSIVGFGLTFVSSKRLSA--SSSLSCSSSRLSCSSTASL 58

Query: 61  FLTRRTRCFRASRVC-ATRSESNQDATSSH----------PSSAAVHSAGNVLKISFCQW 109
           FL  RT  F+A   C +T SE+NQ+ +SS            SS   HS+  +  I FCQW
Sbjct: 59  FLAPRTGSFKA--FCGSTCSEANQEGSSSSPLSMSESPPPASSTVTHSSEKIRNIRFCQW 116

Query: 110 CGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWT 169
           CGGQTKH +P GEEK+RAICTVCGKI YQNPKMVVGCLI HD K+LLC+RKIEPSYGLWT
Sbjct: 117 CGGQTKHGIPEGEEKLRAICTVCGKITYQNPKMVVGCLIHHDNKVLLCRRKIEPSYGLWT 176

Query: 170 LPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSP 229
           LPAGY+EIGESAA+GAIRET EEA A+VEV SPFAQLDIP IGQ YIIF+ KLK+P+FSP
Sbjct: 177 LPAGYLEIGESAADGAIRETLEEANAEVEVTSPFAQLDIPLIGQTYIIFMGKLKKPYFSP 236

Query: 230 GPESSECRLFALDEIPFDSLAFSSISVTLQL 260
           GPES ECRLF LD+IPFDSLAFSS+ VTL+L
Sbjct: 237 GPESLECRLFPLDDIPFDSLAFSSMLVTLRL 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827873|ref|XP_002881819.1| hypothetical protein ARALYDRAFT_483292 [Arabidopsis lyrata subsp. lyrata] gi|297327658|gb|EFH58078.1| hypothetical protein ARALYDRAFT_483292 [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/268 (61%), Positives = 195/268 (72%), Gaps = 19/268 (7%)

Query: 1   MLKSVQILGSSSGFLSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPA 60
           MLK+VQILG SSG   L + +        S V+  +  L  ST       S   S +SP 
Sbjct: 1   MLKAVQILGWSSG---LTISQRLTKTRKSSSVSFISTSLNLST------FSSVTS-ISP- 49

Query: 61  FLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPH 120
              R+   F  +R+ ++   S  D  ++ P+  +V SAG+V KI FCQWCGG TKHE+P 
Sbjct: 50  ---RKIFSFNPTRMSSSLPGS--DPVANSPTFVSVQSAGDVRKIKFCQWCGGPTKHEIPA 104

Query: 121 GEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGES 180
           GEEK+RAICT CGKIAYQNPKMVVGCLIEH++K+LLCKR I+PS+GLWTLPAGY+E+GES
Sbjct: 105 GEEKLRAICTHCGKIAYQNPKMVVGCLIEHEEKVLLCKRNIQPSHGLWTLPAGYLEVGES 164

Query: 181 AAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFA 240
           AA+GA+RETWEEA A VEV SPFAQLDIP IGQ Y+IFLAKLK PHF+PGPES ECRLFA
Sbjct: 165 AAQGAMRETWEEAGASVEVISPFAQLDIPLIGQTYVIFLAKLKNPHFAPGPESLECRLFA 224

Query: 241 LDEIPFDSLAFSSISVTLQLVRFYFEHM 268
           LDEIPFDSLAFSSI VTL L   Y E +
Sbjct: 225 LDEIPFDSLAFSSIYVTLNL---YLEDL 249

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593406|gb|AAM65373.1| unknown [Arabidopsis thaliana]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/273 (60%), Positives = 195/273 (71%), Gaps = 32/273 (11%)

Query: 1   MLKSVQILGSSSGF-LSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSP 59
           MLK+VQILG SSG  +S  L K+                      R+   VS   S ++ 
Sbjct: 1   MLKAVQILGWSSGLTISQRLTKT----------------------RKSSSVSFISSSLNL 38

Query: 60  AFLT----RRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTK 115
           +F+T    RR   F+ +R+ ++   S  D  ++ P+  +V SAG+V KI FCQWCGG TK
Sbjct: 39  SFVTSSSPRRIFSFKPTRMSSSLPGS--DPVANSPTFVSVQSAGDVRKIKFCQWCGGPTK 96

Query: 116 HEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYM 175
           HE+P GEEK+RAICT CGKIAYQNPKMVVGCLIEH+ K+LLCKR I+PS+GLWTLPAGY+
Sbjct: 97  HEIPDGEEKLRAICTHCGKIAYQNPKMVVGCLIEHEGKVLLCKRNIQPSHGLWTLPAGYL 156

Query: 176 EIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSE 235
           E+GESAA+GA+RETWEEA A VEV SPFAQLDIP IGQ Y+IFLAKLK  HF+PGPES E
Sbjct: 157 EVGESAAQGAMRETWEEAGATVEVISPFAQLDIPLIGQTYVIFLAKLKNLHFAPGPESLE 216

Query: 236 CRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268
           CRLFALDEIPFDSLAFSSI VTL L   Y E +
Sbjct: 217 CRLFALDEIPFDSLAFSSIYVTLNL---YLEDL 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405878|ref|NP_565965.1| nudix hydrolase 23 [Arabidopsis thaliana] gi|68565870|sp|P93740.2|NUD23_ARATH RecName: Full=Nudix hydrolase 23, chloroplastic; Short=AtNUDT23; AltName: Full=ADP-ribose pyrophosphatase; AltName: Full=FAD diphosphatase; Flags: Precursor gi|20198322|gb|AAB63537.2| expressed protein [Arabidopsis thaliana] gi|62320524|dbj|BAD95098.1| hypothetical protein [Arabidopsis thaliana] gi|107738412|gb|ABF83693.1| At2g42070 [Arabidopsis thaliana] gi|330254973|gb|AEC10067.1| nudix hydrolase 23 [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 164/269 (60%), Positives = 192/269 (71%), Gaps = 24/269 (8%)

Query: 1   MLKSVQILGSSSGF-LSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSP 59
           MLK+VQILG SSG  +S  L K+  S                  +    + S T S  SP
Sbjct: 1   MLKAVQILGWSSGLTISQRLTKTRKSSTV------------SFISSSLNLSSVTSS--SP 46

Query: 60  AFLTRRTRCFRASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVP 119
               RR   F+ +R+ ++   S  D  ++ P+  +V SAG+V KI FCQWCGG TKHE+P
Sbjct: 47  ----RRIFSFKPTRMSSSLPGS--DPVANSPTFVSVQSAGDVRKIKFCQWCGGPTKHEIP 100

Query: 120 HGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE 179
            GEEK+RAICT CGKIAYQNPKMVVGCLIEH+ K+LLCKR I+PS+GLWTLPAGY+E+GE
Sbjct: 101 DGEEKLRAICTHCGKIAYQNPKMVVGCLIEHEGKVLLCKRNIQPSHGLWTLPAGYLEVGE 160

Query: 180 SAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLF 239
           SAA+GA+RETWEEA A VEV SPFAQLDIP IGQ Y+IFLAKLK  HF+PGPES ECRLF
Sbjct: 161 SAAQGAMRETWEEAGATVEVISPFAQLDIPLIGQTYVIFLAKLKNLHFAPGPESLECRLF 220

Query: 240 ALDEIPFDSLAFSSISVTLQLVRFYFEHM 268
           ALDEIPFDSLAFSSI VTL L   Y E +
Sbjct: 221 ALDEIPFDSLAFSSIYVTLNL---YLEDL 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509957|ref|XP_003625267.1| Nudix hydrolase [Medicago truncatula] gi|355500282|gb|AES81485.1| Nudix hydrolase [Medicago truncatula]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 158/178 (88%), Gaps = 3/178 (1%)

Query: 91  SSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEH 150
           +S+++ S+GNVL I FCQWCGG TKH++P GEEK+RAICT+CG+IAYQNPKMVVGCLIEH
Sbjct: 59  ASSSLQSSGNVLSIKFCQWCGGSTKHDIPEGEEKLRAICTLCGRIAYQNPKMVVGCLIEH 118

Query: 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR 210
           D K+LLCKR I+PSYGLWTLPAGY+EIGESA EGA+RET EEA ADVEV SPFAQLDIP 
Sbjct: 119 DSKVLLCKRNIQPSYGLWTLPAGYLEIGESAMEGAVRETREEANADVEVISPFAQLDIPL 178

Query: 211 IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268
           IGQ Y+IFLAKLK+PHFSPGPESSEC+LF+LD+IPF+SL+FSS+ VTL L   Y E M
Sbjct: 179 IGQTYMIFLAKLKKPHFSPGPESSECQLFSLDDIPFNSLSFSSMVVTLSL---YIEDM 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139790|ref|XP_002323277.1| predicted protein [Populus trichocarpa] gi|222867907|gb|EEF05038.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 132/158 (83%), Positives = 149/158 (94%)

Query: 103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIE 162
           KI+FCQWCGGQTKH++P GEEKMRAICT+C KI+YQNPKMVVGCLIEHD K+LLCKR I+
Sbjct: 19  KINFCQWCGGQTKHDIPDGEEKMRAICTLCEKISYQNPKMVVGCLIEHDNKVLLCKRNIQ 78

Query: 163 PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKL 222
           PS+GLWTLPAGY+EIGESAAEGAIRETWEEARA+VEV SPFAQLDIPRIGQ YIIFLAKL
Sbjct: 79  PSHGLWTLPAGYLEIGESAAEGAIRETWEEARAEVEVVSPFAQLDIPRIGQTYIIFLAKL 138

Query: 223 KRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQL 260
           K+PHFSPGPES ECRLF++D++P DSLAFSS+ VTL+L
Sbjct: 139 KKPHFSPGPESLECRLFSIDDLPLDSLAFSSMVVTLKL 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2064632	280	NUDX23 "nudix hydrolase homolo	0.709	0.696	0.700	3.7e-71
TIGR_CMR|GSU_2015	150	GSU_2015 "mutT/nudix family pr	0.225	0.413	0.469	2.3e-09
TIGR_CMR|BA_3685	147	BA_3685 "mutT/nudix family pro	0.407	0.761	0.330	3.5e-07
TIGR_CMR|SPO_0294	139	SPO_0294 "hydrolase, NUDIX fam	0.381	0.755	0.283	3.5e-07
TIGR_CMR|BA_1997	153	BA_1997 "mutT/nudix family pro	0.189	0.339	0.490	4.5e-07
TIGR_CMR|BA_4380	141	BA_4380 "mutT/nudix family pro	0.232	0.453	0.402	5.9e-07
TIGR_CMR|GSU_0154	147	GSU_0154 "mutT/nudix family pr	0.210	0.394	0.362	4.6e-06
UNIPROTKB|P0AEI6	153	nudJ "HMP-PP hydrolase /thiami	0.374	0.673	0.288	1.4e-05
TIGR_CMR|BA_2047	205	BA_2047 "mutT/nudix family pro	0.403	0.541	0.297	2.7e-05
TIGR_CMR|CHY_1339	129	CHY_1339 "mutator mutT protein	0.298	0.635	0.305	0.00013

TAIR|locus:2064632 NUDX23 "nudix hydrolase homolog 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 138/197 (70%), Positives = 156/197 (79%)

Query:    64 RRTRCFRASRVCATRSESNQDXXXXXXXXXXXXXXGNVLKISFCQWCGGQTKHEVPHGEE 123
             RR   F+ +R+ ++   S  D              G+V KI FCQWCGG TKHE+P GEE
Sbjct:    47 RRIFSFKPTRMSSSLPGS--DPVANSPTFVSVQSAGDVRKIKFCQWCGGPTKHEIPDGEE 104

Query:   124 KMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAE 183
             K+RAICT CGKIAYQNPKMVVGCLIEH+ K+LLCKR I+PS+GLWTLPAGY+E+GESAA+
Sbjct:   105 KLRAICTHCGKIAYQNPKMVVGCLIEHEGKVLLCKRNIQPSHGLWTLPAGYLEVGESAAQ 164

Query:   184 GAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDE 243
             GA+RETWEEA A VEV SPFAQLDIP IGQ Y+IFLAKLK  HF+PGPES ECRLFALDE
Sbjct:   165 GAMRETWEEAGATVEVISPFAQLDIPLIGQTYVIFLAKLKNLHFAPGPESLECRLFALDE 224

Query:   244 IPFDSLAFSSISVTLQL 260
             IPFDSLAFSSI VTL L
Sbjct:   225 IPFDSLAFSSIYVTLNL 241

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0047884 "FAD diphosphatase activity" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0042726 "flavin-containing compound metabolic process" evidence=IMP

TIGR_CMR|GSU_2015 GSU_2015 "mutT/nudix family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 139 (54.0 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 31/66 (46%), Positives = 41/66 (62%)

Query:   129 CTVCG-KI-AYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAI 186
             C  CG K+ AY+NP   V  +IE    I+L +RK EP  G W LP G+++ GES  + A+
Sbjct:     8 CPRCGEKVRAYRNPVPTVDIIIETPDGIVLIERKNEP-LG-WALPGGFVDYGESLEDAAV 65

Query:   187 RETWEE 192
             RE WEE
Sbjct:    66 REAWEE 71

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|BA_3685 BA_3685 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 120 (47.3 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 39/118 (33%), Positives = 56/118 (47%)

Query:   143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
             V G LIE D+K+LL K+K+      W+LP G +E GE+  E  IRE  EE   +V +Q  
Sbjct:     9 VTGILIE-DEKVLLVKQKVANRN--WSLPGGRVENGETLEEAMIREMREETGLEVNIQKL 65

Query:   203 FAQLDIP--RIGQIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSSISVT 257
                 D P  R   ++I FL +      + P  E     ++ +  IP   L+    S T
Sbjct:    66 LYVCDKPDARPSLLHITFLLERIEGEITLPSNEFDYNPIYDVQMIPIKDLSQYGFSET 123

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|SPO_0294 SPO_0294 "hydrolase, NUDIX family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 120 (47.3 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 32/113 (28%), Positives = 57/113 (50%)

Query:   140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
             P++    ++ H+ ++LL +R  +P  GLW  P G++E GE+  + A+RE  EE   +   
Sbjct:     5 PRIGALAVVIHEGQVLLAQRGKDPGRGLWGFPGGHVEWGETVRDAALRELHEETAIEARA 64

Query:   200 QSPFAQLD-IPR--IGQ--IYIIFLAKLKRPHF-SP--GPESSECRLFALDEI 244
             Q      D I R   GQ  ++ + +  L R    +P  G ++ + R F +D +
Sbjct:    65 QRYLTHFDLIHRDDAGQAVVHYLLVGVLCRYQAGAPQAGDDAMDARWFPIDHV 117

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|BA_1997 BA_1997 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 119 (46.9 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 27/55 (49%), Positives = 33/55 (60%)

Query:   145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
             GC+   + ++LL KR     +  W  P G MEIGESAAE AIRE  EE   DVE+
Sbjct:    24 GCVFNKEGEVLLQKRG---DFNAWGFPGGAMEIGESAAETAIREIKEETGYDVEI 75

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|BA_4380 BA_4380 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 118 (46.6 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query:   134 KIAYQNPKMVVGC--LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
             KI    P ++VG   L+ ++   +L +++ EP YG W LP G ME+GES  E A RE +E
Sbjct:     9 KIVGHRPLILVGAVVLVINEHGYVLLQQRTEP-YGKWGLPGGLMELGESPEETACREVYE 67

Query:   192 EARADVE 198
             E   +V+
Sbjct:    68 ETGIEVK 74

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|GSU_0154 GSU_0154 "mutT/nudix family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query:   143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
             VV  +++ D ++LL KR + P  G W +P G +++GE       RE  EE    VEV+
Sbjct:    15 VVAVIVDDDGQVLLTKRNVTPFKGEWVMPGGKIDLGEPIVAALQREVMEEVGLQVEVE 72

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|P0AEI6 nudJ "HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional]" [Escherichia coli K-12 (taxid:83333)]

 Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 32/111 (28%), Positives = 51/111 (45%)

Query:   140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
             P + V C++  + K L+ +  I     LW  PAG++E  E+  E A RE WEE     + 
Sbjct:     4 PHVTVACVVHAEGKFLVVEETINGK-ALWNQPAGHLEADETLVEAAARELWEETGISAQP 62

Query:   200 QSPFAQLD--IPRIGQIYIIFLAKLKRPHFSPG-PESSE---CRLFALDEI 244
             Q  F ++   I      ++ FL  ++     P  P  S+   CR  + +EI
Sbjct:    63 QH-FIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEI 112

GO:0016787 "hydrolase activity" evidence=IEA

TIGR_CMR|BA_2047 BA_2047 "mutT/nudix family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 118 (46.6 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 36/121 (29%), Positives = 57/121 (47%)

Query:   137 YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD 196
             YQ PK+ +  ++  ++++L  K K   S G W LP G+ +IG +  E A +E  EE   +
Sbjct:    64 YQTPKVDIRAVVFQNERLLFVKEK---SDGKWALPGGWADIGYTPTEVAAKEVLEETGFE 120

Query:   197 VEVQSPFAQLD------IPRIGQIYIIFLA-KLKRPHFSPGPESSECRLFALDEIPFDSL 249
             VE    FA  D       P    +Y IF+  K+         E+ +   F  +E+P  S+
Sbjct:   121 VEDFKLFAIFDKEKHQPSPSATHVYKIFIGCKIIGGEKKTSIETEDVEFFGENELPNLSI 180

Query:   250 A 250
             A
Sbjct:   181 A 181

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|CHY_1339 CHY_1339 "mutator mutT protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 26/85 (30%), Positives = 41/85 (48%)

Query:   143 VVGCLIEHDKKILLCKRKIEPSY--GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
             V   +I H  K+L+ +RK+   Y  G W  P G +E GE+  +  +RE  EE   ++++ 
Sbjct:     4 VTAAIIIHKGKVLITRRKLNDKYLPGKWEFPGGKVEQGETPEDCLVREIKEELDLNIKIT 63

Query:   201 SPFAQLDIPRIGQIYIIFLAKLKRP 225
               F +  I       I  LA L +P
Sbjct:    64 QFFGE-SIYEYPFFKIKLLAFLAQP 87

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0008413 "8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93740	NUD23_ARATH	3, ., 6, ., 1, ., 1, 8	0.6096	0.8909	0.875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.963
3rd Layer	3.6.1.13	0.946
3rd Layer	3.6.1.22	LOW CONFIDENCE prediction!
3rd Layer	3.6.1.18	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025387001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (287 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007090001	SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (493 aa)	•								0.495
	GSVIVG00001049001	SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (255 aa)							•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	1e-78
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	6e-28
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	2e-20
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-20
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	2e-19
pfam00293	133	pfam00293, NUDIX, NUDIX domain	6e-19
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	5e-13
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	6e-13
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	8e-13
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	5e-12
COG2816	279	COG2816, NPY1, NTP pyrophosphohydrolases containin	1e-10
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	7e-10
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	3e-09
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	5e-09
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	6e-09
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	7e-09
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	9e-09
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	9e-09
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	1e-08
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-08
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	7e-08
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	2e-07
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	3e-07
PRK00241	256	PRK00241, nudC, NADH pyrophosphatase; Reviewed	4e-07
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	8e-07
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	9e-07
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	1e-06
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	1e-06
cd04688	126	cd04688, Nudix_Hydrolase_29, Members of the Nudix	2e-06
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	2e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	2e-06
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	9e-06
PLN02325	144	PLN02325, PLN02325, nudix hydrolase	1e-05
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	2e-05
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	2e-05
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	2e-05
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	3e-05
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	6e-05
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	8e-05
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	1e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-04
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	1e-04
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	2e-04
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	2e-04
cd04687	128	cd04687, Nudix_Hydrolase_28, Members of the Nudix	3e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	5e-04
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	5e-04
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	0.002
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	0.002
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	0.003
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	0.004

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  233 bits (597), Expect = 1e-78
 Identities = 70/130 (53%), Positives = 93/130 (71%)

Query: 129 CTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRE 188
           C  CG I YQNPK++VGC+ E + K+LLC+R IEP +G WTLPAG+ME GE+  +GA+RE
Sbjct: 1   CPDCGYIHYQNPKIIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRE 60

Query: 189 TWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDS 248
           TWEEA A VE+   +A   +P I Q+Y+ + A+L    F+PGPES E RLF  +EIP+D 
Sbjct: 61  TWEEAGARVEIDGLYAVYSVPHISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEIPWDE 120

Query: 249 LAFSSISVTL 258
           LAF ++  TL
Sbjct: 121 LAFPTVRRTL 130

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score =  104 bits (261), Expect = 6e-28
 Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
              + Y+ P + VG LI  + +ILL +R  EP  G W LP G++EIGE+  E A RE  E
Sbjct: 1   RLAMGYRTPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKE 60

Query: 192 EARADVEVQSPFAQLDIPRIG----QIYIIFLAKLK--RPHFSPGPESSECRLFALDEIP 245
           E    V V    A  D P        +  +F A           G +++E   F LDE+P
Sbjct: 61  ETGLRVRVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELP 120

Query: 246 FDSLAFSSISVTLQLVRFYFE 266
              L  +    TL  +R  F 
Sbjct: 121 ELPLPLAF---TLADLRRLFL 138

Length = 145

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 84.2 bits (209), Expect = 2e-20
 Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 10/117 (8%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           PK+ V   I  D KILL + K +   GLW+LP G+ ++G S AE  ++E  EE   DV+V
Sbjct: 1   PKVDVRAAIFKDGKILLVREKSD---GLWSLPGGWADVGLSPAENVVKEVKEETGLDVKV 57

Query: 200 QSPFAQLD------IPRIGQIY-IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSL 249
           +   A  D       P+  Q+Y + FL ++    F P  E+SE   FALD++P  S 
Sbjct: 58  RKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDLPPLSE 114

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 83.7 bits (207), Expect = 2e-20
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 143 VVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
            VG +I  +  ++LL +R   P  GLW LP G +E GE+  E AIRE  EE   DV+V  
Sbjct: 2   AVGAVILDEDGRVLLVRRADSP-GGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR 60

Query: 202 PFAQLDIPRI----GQIYIIFLAKLK--RPHFSPGPESSECRLFALDEIP 245
                ++         +  +FLA+L    P   P  E SE R   LDE+P
Sbjct: 61  LLGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELP 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 81.1 bits (201), Expect = 2e-19
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
           VG ++    ++LL +R   P  GLW+ P G +E+GE+  + A+RE  EE   + EV    
Sbjct: 3   VGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLL 62

Query: 204 AQLDI------PRIGQIYII--FLAKLKRPHFSPGPESSECRLFALDEI 244
             +D+       R+   Y++  FL +        G ++ + R   LDE+
Sbjct: 63  TVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 140 PKMVVGCLIEH-DKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
            +  VG ++ + D ++LL +R   P + GLW LP G +E GES  E A+RE  EE    V
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 198 EVQSPFAQLD----IPRIGQIYIIFLAKLKR--PHFSPGP-ESSECRLFALDEIPFDSLA 250
            +      L+        G+   +FLA+L    P   P   E SE R   L+E+    LA
Sbjct: 61  LLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLLA 120

Query: 251 FSSISVTLQLVR 262
                V   L+ 
Sbjct: 121 GEIREVIALLLA 132

Length = 133

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ 205
           C I+   K+LL  RK  P +G W  P G +E GE+  E AIRE  EE    + + +   +
Sbjct: 6   CFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETG--LTIDNL--K 61

Query: 206 L------DIPRIGQIYIIFLAKLKRPHFSPGPESSECRL--FALDEIPFDSLA 250
           L        P   + Y +F+         P  ES E  L  F +D++P   + 
Sbjct: 62  LVGIIKFPFPGEEERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPLLPMW 114

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 20/117 (17%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
               L+    ++LL KR      G W LP G ME+GES  E A RE  EE   +VE    
Sbjct: 10  AGVILLNEQGEVLLQKRS---DTGDWGLPGGAMELGESLEETARRELKEETGLEVEELEL 66

Query: 203 FAQLDIP---------RIGQIYIIFLAK-----LKRPHFSPGPESSECRLFALDEIP 245
                               I  ++           P    G E+ E + F+LDE+P
Sbjct: 67  LGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPD---GDETLELKFFSLDELP 120

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 63.6 bits (155), Expect = 8e-13
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 12/127 (9%)

Query: 144 VGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
           VG LI ++  ++L+ +R  EP  G   LP G+++ GESA E  IRE  EE    ++V   
Sbjct: 4   VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREE--TGLKVTEL 61

Query: 203 FAQLDIPRI----GQIY----IIFLAKL-KRPHFSPGPESSECRLFALDEIPFDSLAFSS 253
                +P      G  Y    + F+ ++  +P      + +E +     +I  ++ AF S
Sbjct: 62  SYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPS 121

Query: 254 ISVTLQL 260
           I   ++ 
Sbjct: 122 IRQAVER 128

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-- 200
           V   + + + ++LL +R      GLW LP G +E GES A+ A+RE  EE   DVEV   
Sbjct: 5   VTAVVRDDEGRVLLIRRSDN---GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGL 61

Query: 201 -----SPFAQLDIP---RIGQIYIIFLAKLK--RPHFSPGPESSECRLFALDEIP 245
                 P   +  P       + I F  ++           ES +   F  D +P
Sbjct: 62  VGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGEL-RVGDDESLDVAWFDPDGLP 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165
           FC  CG +T      G      +C  CG   +      V   +    +ILL +       
Sbjct: 113 FCGRCGTKT--YPREGGWAR--VCPKCGHEHFPRIDPCVIVAVIRGDEILLARHPRHFP- 167

Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
           G+++L AG++E GE+  +   RE +EE    V+
Sbjct: 168 GMYSLLAGFVEPGETLEQAVAREVFEEVGIKVK 200

Length = 279

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 151 DKKILLCKRKIEPSYG-LWTLPAGYMEIGESAAEGAIRETWEE----ARADVEVQSPFAQ 205
           D ++LL +     +YG  W LP G +E GE+ AE A RE  EE         E+   +  
Sbjct: 11  DGRVLLVRH----TYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYH 66

Query: 206 LDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
                   + +       +P   P  E SE R F  D +P
Sbjct: 67  SASGSWDHVIVFRARADTQPVIRPSHEISEARFFPPDALP 106

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 140 PKMVVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
           P++ VG  + + K K+LL KRK     G W LP G++E GES  E A RE  EE 
Sbjct: 1   PRVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEET 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.8 bits (127), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL 206
           +I    +ILL +R I+P    +  P G +E GE+  E A RE  EE   DV V+  F  +
Sbjct: 7   IINDQGEILLIRR-IKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIV 65

Query: 207 DIPRIGQIYIIFLAKLKRPHFSPG 230
           +     + Y  FLA++       G
Sbjct: 66  NQNGRTEHY--FLARVISGKLGLG 87

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV------ 199
            +I  D K+LL ++   P  G W LP G +E GES  E   RE  EE    VE+      
Sbjct: 5   AVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGS 64

Query: 200 -----QSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
                 SP    D   +   Y   +     P   PG +S       LDE  
Sbjct: 65  ASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAI 115

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.9 bits (127), Expect = 7e-09
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 17/115 (14%)

Query: 144 VGC---LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           VGC   ++  D K+LL KR   P  G W +P G ++  E+  +  +RE  EE    +   
Sbjct: 3   VGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST 62

Query: 201 SPFAQLD--IPRIGQ--IYIIFLAKLKRPHFSPGPES------SECRLFALDEIP 245
                +D  I    Q  +  ++LA+    +FS  P         E   FALD +P
Sbjct: 63  RLLCVVDHIIEEPPQHWVAPVYLAE----NFSGEPRLMEPDKLLELGWFALDALP 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 143 VVGCLIEHDK-KILLCKRKIEPSY--GLWTLPAGYMEIGESAAEGAIRETWEEA----RA 195
            V  LI  D  +IL+ KR  +     G W LP G +E GE+  E   RE +EE       
Sbjct: 3   AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTP 62

Query: 196 DVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDE 243
            +   S     D      IY++F+ +          E  E     L+E
Sbjct: 63  FLRYPSTVTHEDSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEE 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.1 bits (125), Expect = 9e-09
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 7/103 (6%)

Query: 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
           NP  VV  L+  D  +L+ +R IEP  G   LP G++E+GE+  +   RE  EE    V+
Sbjct: 2   NPLPVVVALLPVDDGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61

Query: 199 VQ--SPFAQLDIPRIGQIYIIFLAKLKR----PHFSPGPESSE 235
                 F     P  G + +  L   +R    P F P  E++E
Sbjct: 62  PADIRLFDVRSAPD-GTLLVFGLLPERRAADLPPFEPTDETTE 103

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG 212
           ++LL  R   P    W+LP G +E GE+  E A+RE  EE     EV           +G
Sbjct: 17  EVLLIHR---PRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEV--------GDPLG 65

Query: 213 QIYIIFLAKLKRPH-----FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267
            I   F +  KR H     +       E      +E+  D + +         + +  + 
Sbjct: 66  TIRYWFSSSGKRVHKTVHWWLMRALGGEFTPQPDEEV--DEVRWLPPDEARDRLSYPNDR 123

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 51.4 bits (122), Expect = 4e-08
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 11/116 (9%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGES-AAEGAIRETWEEARADVEVQS 201
            V    +   ++LL +R+ +   GLW LP G +E GE    E A RE  EE    V+ + 
Sbjct: 15  AVLVGRDGPGEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDER 72

Query: 202 PFAQLDIP--------RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSL 249
                + P          G+ + +F         +   E        L+++ +  L
Sbjct: 73  LELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPL 128

Length = 161

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 49.8 bits (120), Expect = 7e-08
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 143 VVGCLIEHDK-KILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           VV  +I  D  +IL+ +R       GLW  P G +E GE+  +  +RE  EE   +VEV 
Sbjct: 3   VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG 62

Query: 201 SPFAQLD 207
              A ++
Sbjct: 63  ELLATVE 69

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           + V  ++     +LL +R+ EP  GLW LP G++E  E+  +  +RE  EE    +    
Sbjct: 204 VTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKL---- 259

Query: 202 PFAQLDIPRIGQ 213
           P   L      Q
Sbjct: 260 PEPVLRGSIRDQ 271

Length = 340

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 143 VVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
            V  L+     +ILL ++   P  G+++L AG++E GES  E   RE  EE    V+
Sbjct: 2   AVIVLVIDGGDRILLARQPRFPP-GMYSLLAGFVEPGESLEEAVRREVKEEVGIRVK 57

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ--NPKMVVGCLIEHDKKILLCKRKIEP 163
           FC +CG          E  M  +C  C +  Y    P ++    +    +ILL +     
Sbjct: 101 FCGYCGHPMHPS--KTEWAM--LCPHCRERYYPRIAPCII--VAVRRGDEILLARHPRHR 154

Query: 164 SYGLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
           + G++T+ AG++E+GE+  +   RE  EE+   V
Sbjct: 155 N-GVYTVLAGFVEVGETLEQCVAREVMEESGIKV 187

Length = 256

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 142 MVVGCL---IEHDK-KILLC-KRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA--R 194
           +  G +       + ++LL   R+     G W +P G  E  ES AE A RE WEEA  R
Sbjct: 1   LQAGAIPYRETGGEVEVLLVTSRR----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Query: 195 ADVEVQS 201
             +  + 
Sbjct: 57  GKIGKRP 63

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 46.8 bits (112), Expect = 9e-07
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGL-WTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           + V  ++E D + LL + + +   GL +  PAG++E GES  E A+RET EE    VE  
Sbjct: 1   VTVAAVVERDGRFLLVEEETDG--GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT 58

Query: 201 S 201
           +
Sbjct: 59  A 59

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 155 LLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA--QLDIP--- 209
           LL +     SYG W  P G++E GE   E A+RET EE     E        +  +    
Sbjct: 20  LLLQA----SYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQV 75

Query: 210 -RIGQIYIIFLAKLKRP-HFSPGPESSECRLFALDEI 244
               +    FLA+L+         E  + R    +E 
Sbjct: 76  RGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEA 112

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 143 VVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           +V  +I +++ ++LL +       G W LPAG ME GE+  E   RE  EE   D E 
Sbjct: 2   IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEP 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           K+    +I H+ K+L+ K    P    +  P G +E GES+ E  IRE  EE    +E+ 
Sbjct: 1   KVRAAAIIIHNGKLLVQK---NPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 151 DKKILLCKR----KIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
           D+K+LL +R    +I P   +W  P G++E+GE+  E  +RE  EE
Sbjct: 12  DQKLLLTRRASSLRIFP--NVWVPPGGHVELGENLLEAGLRELNEE 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 147 LIEHDKKILLCKRKIEPSY---GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
           L+  D ++LL  R  +P     G W LP G+ E GE+  E  +RE  EE    + +  P 
Sbjct: 7   LLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEE----IGLTLPE 62

Query: 204 AQLDIPRIGQ------IYIIFLAKL--KRPHFSPGPESSECRLFALDEIPFDSLA 250
           +++   R+           +F+  L  +      G E    RL  ++E      A
Sbjct: 63  SRIPWFRVYPSASPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHEDA 117

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 28/127 (22%)

Query: 144 VG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV----- 197
           VG  L   D K+ + +R   P    W  P G ++ GE   + A+RE  EE   D      
Sbjct: 6   VGVVLFNEDGKVFVGRRIDTPGA--WQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI 63

Query: 198 --EVQSPFAQLDIPR-----------IGQIYIIFLAKLK------RPHFSPGPESSECRL 238
             E+       D+P             GQ    FL +          +    PE  E R 
Sbjct: 64  IAEIPDWLR-YDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRW 122

Query: 239 FALDEIP 245
             L+E+P
Sbjct: 123 VPLEELP 129

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
           P++ V   +     +LL +R+       + LP G++E GES  E A RE  EE   ++E
Sbjct: 8   PRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIE 66

Length = 144

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY----GLWTLPAGYMEIGESAAEGAIRETWEE 192
           VV  +IE D KILL +R   P++    GLW    G +E GES  +  IRE  EE
Sbjct: 6   VVAAIIERDGKILLAQR---PAHSDQAGLWEFAGGKVEPGESQPQALIRELREE 56

Length = 135

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 144 VGCLIEHDKKILLCKRKIEPSY--GLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
           V  L+  D ++LL +R     Y  G W LPAG++E GE A   A+RE  EE    ++
Sbjct: 3   VYVLLRRDDEVLLQRRA-NTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 140 PKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
           P + VG LI   D +ILL +       GLW +P G +E GE+  E   RE  EE
Sbjct: 1   PLVTVGALIYAPDGRILLVRTT--KWRGLWGVPGGKVEWGETLEEALKREFREE 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI 208
               ++LL ++    S   W LP G +E GE+  + A RE  EE             +D 
Sbjct: 8   RRGGRVLLVRK----SGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD- 62

Query: 209 PRIGQ--IYIIFLAKL-KRPHFSPGPESSECRLFALDEIP 245
              G    + +F+A +       P  E ++CR  +LD + 
Sbjct: 63  ---GGSTRHHVFVASVPPSAQPKPSNEIADCRWLSLDALG 99

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
           ++     +LL + K  P  GLW +P+G +E GE   + A+RE  EE
Sbjct: 20  ILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEE 65

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 143 VVGCLIEHDKKILLCK--RKIEPSYGLWTL--PAGYMEIGESAAEGAIRETWEEA 193
           V     + D K++L +  R   P  G W L  PAG ++ GE   E A RE  EE 
Sbjct: 5   VAVLPYDDDGKVVLVRQYR---PPVGGWLLELPAGLIDPGEDPEEAARRELEEET 56

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 141 KMVVGCLIEHDKKILLCK----RKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD 196
           + +V  LI++D   LLCK    R + P  G W L  G +E GE   E   RE  EE    
Sbjct: 4   RTIVCPLIQNDGAYLLCKMADDRGVFP--GQWALSGGGVEPGERIEEALRREIREELGEQ 61

Query: 197 VEVQ--SPFAQLDIPRIG--------QIYIIFL 219
           + +   +P+   D  R          +IY+I+L
Sbjct: 62  LLLTEITPWTFRDDIRTKTYADGRKEEIYMIYL 94

Length = 141

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 168 WTLPAGYMEIGESAAEGAIRETWEEARADVE 198
           W  P G++E GE+  E A RE WEE  A++ 
Sbjct: 23  WEFPGGHVEPGETIEEAARREVWEETGAELG 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
           VG L+ ++K  +L  ++   +   W LP G ++ GE   +GA+RE  EE   D E  S  
Sbjct: 5   VGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVV 64

Query: 204 AQ 205
             
Sbjct: 65  GF 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS- 201
           VV   +  + ++LL +R  +   G W    G +E GES AE A RE  EE   D E  + 
Sbjct: 6   VVPYRLTGEGRVLLLRRSDKY-AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL 64

Query: 202 -----PFAQLDIPRIGQIYII--FLAKLKRP 225
                  A ++    G+++    F   L   
Sbjct: 65  LDRGASIAFVEFTDNGRVWTEHPFAFHLPSD 95

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEE 192
            +  G + + D +ILL +R       GLW  P G +E GE+  +   RE  EE
Sbjct: 6   HVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEE 58

Length = 312

>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 145 GCLIEHDKKILLCKRKIEPSYGLW-TLPAGYMEIGESAAEGAIRETWEEARADVEV 199
             +I  + KILL K       G+W  LP G  E GE+  + A RE  EE   DVE+
Sbjct: 5   KAVIIKNDKILLIKHH--DDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEI 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY--GLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
           VVG L   DK +LL +R +  +   G   +P G++E GES  E  +RE  EE   D 
Sbjct: 3   VVGVLFSDDK-VLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDP 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARA-DVEVQSPF 203
           +I    KILL        YG +  P G +E GE   EG IRE  EE  A ++ V   F
Sbjct: 6   IILQGDKILLLY---TKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKF 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
               ++  D ++LL +++      ++ LP G +E GE+  +  IRE  EE   D++
Sbjct: 3   AAALILVRDGRVLLVRKR---GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA---RADVEVQSPFAQLDIP 209
           K+LL   +     G W  P G+++  ES  E A+RE  EE       +   S    LD+ 
Sbjct: 16  KVLLTHHRK---LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVH 72

Query: 210 RIGQ-----------IYIIFLAKL--KRPHFSPGPESSECRLFALDEI 244
            I             + + FLA             ES   R F LDE+
Sbjct: 73  PIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDEL 120

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 171 PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI 208
           P G +E GE++ E AIRE  EE  A V+      Q ++
Sbjct: 50  PGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEV 87

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           D  +L+ +R  +P +  W    G +E GE+ A+ AIRE  EE   DV  
Sbjct: 18  DLGVLMLQRADDPDF--WQSVTGSLEEGETPAQTAIREVKEETGIDVLA 64

Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	100.0
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	100.0
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	100.0
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.95
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.87
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.85
PLN02325	144	nudix hydrolase	99.84
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.83
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.83
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.83
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.83
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.82
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.82
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.81
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.81
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.81
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.81
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.81
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.8
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.8
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.8
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.8
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.79
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.79
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.79
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.78
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.77
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.77
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.76
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.76
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.75
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.75
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.75
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.75
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.74
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.74
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.73
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.73
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.73
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.73
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.73
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.73
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.73
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.72
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.71
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.7
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.7
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.7
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.69
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.69
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.69
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.68
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.68
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.68
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.66
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.66
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.65
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.64
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.64
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.64
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.63
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.62
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.59
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.58
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.57
PRK08999	312	hypothetical protein; Provisional	99.56
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.55
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.52
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.51
PRK10707	190	putative NUDIX hydrolase; Provisional	99.49
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.49
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.49
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.48
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.45
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.4
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.35
PLN02709	222	nudix hydrolase	99.34
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.24
PLN03143	291	nudix hydrolase; Provisional	99.18
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.17
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.12
PLN02791	770	Nudix hydrolase homolog	99.02
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	98.94
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.88
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	98.82
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.77
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	98.7
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.65
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.38
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.23
PLN02839	372	nudix hydrolase	98.12
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.09
smart00661	52	RPOL9 RNA polymerase subunit 9.	97.44
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	97.3
KOG4195	275	consensus Transient receptor potential-related cha	97.2
PRK00432	50	30S ribosomal protein S27ae; Validated	97.15
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.13
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	96.87
PRK10880	350	adenine DNA glycosylase; Provisional	96.56
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	96.07
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	95.9
PF13248	26	zf-ribbon_3: zinc-ribbon domain	95.16
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	95.04
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	94.48
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	94.47
PF12773	50	DZR: Double zinc ribbon	93.39
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	93.25
PRK13910	289	DNA glycosylase MutY; Provisional	93.18
PF09296	98	NUDIX-like: NADH pyrophosphatase-like rudimentary	93.15
PRK00420	112	hypothetical protein; Validated	92.67
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	92.55
COG1594	113	RPB9 DNA-directed RNA polymerase, subunit M/Transc	92.52
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	92.33
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	91.98
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	91.85
PHA00626	59	hypothetical protein	91.8
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	91.23
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	91.16
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	91.13
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	91.11
PF06044	254	DRP: Dam-replacing family; InterPro: IPR010324 Dam	90.48
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	90.06
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	90.04
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	89.85
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	89.72
PRK10220	111	hypothetical protein; Provisional	89.5
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.15
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	88.94
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	88.22
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	87.98
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	87.76
TIGR00244	147	transcriptional regulator NrdR. Members of this al	87.76
COG0353	198	RecR Recombinational DNA repair protein (RecF path	87.54
PRK13844	200	recombination protein RecR; Provisional	87.44
COG1327	156	Predicted transcriptional regulator, consists of a	87.3
PF07295	146	DUF1451: Protein of unknown function (DUF1451); In	87.28
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	86.92
COG4640	465	Predicted membrane protein [Function unknown]	86.71
COG3677	129	Transposase and inactivated derivatives [DNA repli	86.59
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	86.49
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	86.38
PRK11032	160	hypothetical protein; Provisional	86.19
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	85.93
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	85.92
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	85.6
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	85.48
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	85.4
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	85.34
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	85.19
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	85.12
TIGR00615	195	recR recombination protein RecR. This family is ba	84.93
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	84.71
PRK14559	645	putative protein serine/threonine phosphatase; Pro	84.7
COG2824	112	PhnA Uncharacterized Zn-ribbon-containing protein	84.62
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	84.41
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	84.29
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	84.12
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.93
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	83.78
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	83.76
COG1779	201	C4-type Zn-finger protein [General function predic	83.72
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	83.65
COG5349	126	Uncharacterized protein conserved in bacteria [Fun	83.54
PF12773	50	DZR: Double zinc ribbon	83.53
PRK00076	196	recR recombination protein RecR; Reviewed	83.43
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	82.7
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	82.55
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	82.47
PRK11827	60	hypothetical protein; Provisional	82.42
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	82.39
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	82.37
PF14353	128	CpXC: CpXC protein	81.84
TIGR01031	55	rpmF_bact ribosomal protein L32. This protein desc	81.67
PF01599	47	Ribosomal_S27: Ribosomal protein S27a; InterPro: I	81.67
COG1656	165	Uncharacterized conserved protein [Function unknow	81.11

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=100.00  E-value=5e-46  Score=335.33  Aligned_cols=171  Identities=23%  Similarity=0.338  Sum_probs=164.5

Q ss_pred             ecceeeccccccc-CCCCCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEE
Q 023914           70 RASRVCATRSESN-QDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLI  148 (275)
Q Consensus        70 ~~~~~~~~r~~~~-~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI  148 (275)
                      .+++++++|+++. +|+.++.++++|++|++|+++|+|||+||++|...    +++++++|++||..+||+++|+|++++
T Consensus        76 ~~~~~~~lR~l~~~~~~~~~~~~~~a~~l~~w~~~~RFCg~CG~~~~~~----~~g~~~~C~~cg~~~fPR~dP~vIv~v  151 (279)
T COG2816          76 EPFELVDLRSLLTELDEGLFGLAARAVQLLEWYRSHRFCGRCGTKTYPR----EGGWARVCPKCGHEHFPRIDPCVIVAV  151 (279)
T ss_pred             CccceeeHHHHhccCCHHHHHHHHHHHHHHHHHhhCcCCCCCCCcCccc----cCceeeeCCCCCCccCCCCCCeEEEEE
Confidence            6788999999987 89999999999999999999999999999999988    899999999999999999999999999


Q ss_pred             eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCC
Q 023914          149 EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFS  228 (275)
Q Consensus       149 ~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~  228 (275)
                      .+++++||.++.+++ +|+|++.+||||+|||+|+|++||++||+|++|++++|+++|+||+++++|++|.+++.++++.
T Consensus       152 ~~~~~ilLa~~~~h~-~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~SLMigf~aey~sgeI~  230 (279)
T COG2816         152 IRGDEILLARHPRHF-PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEYDSGEIT  230 (279)
T ss_pred             ecCCceeecCCCCCC-CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchhhhhhheeeecccccc
Confidence            999999999999887 8999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCceeEEEecCCC-CC
Q 023914          229 PG-PESSECRLFALDE-IP  245 (275)
Q Consensus       229 ~~-~E~~d~~W~~~de-L~  245 (275)
                      ++ .|++|++||+.+| ++
T Consensus       231 ~d~~Eleda~WFs~~evl~  249 (279)
T COG2816         231 PDEGELEDARWFSRDEVLP  249 (279)
T ss_pred             CCcchhhhccccCHhHHhh
Confidence            87 7999999999999 54

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=100.00  E-value=7.7e-42  Score=309.46  Aligned_cols=189  Identities=20%  Similarity=0.288  Sum_probs=173.2

Q ss_pred             cceeecccccccCCCCCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEee
Q 023914           71 ASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEH  150 (275)
Q Consensus        71 ~~~~~~~r~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~  150 (275)
                      ++++.+||++..+++.+++++++|++|.+|+++++|||+||+++...    ++++++.|++||+.+||++.++|+++|.+
T Consensus        66 ~~~~~~lr~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~----~~~~~~~C~~c~~~~yp~~~paViv~V~~  141 (256)
T PRK00241         66 GHEMGSLRQLLDLDDGLFQLLGRAVQLAEFYRSHRFCGYCGHPMHPS----KTEWAMLCPHCRERYYPRIAPCIIVAVRR  141 (256)
T ss_pred             cccchhhhhhccCCHHHHHHHHHHHHHHHHhhcCccccccCCCCeec----CCceeEECCCCCCEECCCCCCEEEEEEEe
Confidence            56778999987789999999999999999999999999999999776    67899999999999999999999999999


Q ss_pred             CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCCCC
Q 023914          151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPG  230 (275)
Q Consensus       151 ~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~~~  230 (275)
                      +++|||+||...+ .|.|++|||++|+|||+++||+||++||||+++..++++++++|++++.+|++|.++..++++..+
T Consensus       142 ~~~iLL~rr~~~~-~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~p~~lm~~f~a~~~~~~~~~~  220 (256)
T PRK00241        142 GDEILLARHPRHR-NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPFPHSLMLGFHADYDSGEIVFD  220 (256)
T ss_pred             CCEEEEEEccCCC-CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecCCCeEEEEEEEEecCCcccCC
Confidence            9999999998877 799999999999999999999999999999999999999999999999999999999987776665


Q ss_pred             -CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          231 -PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       231 -~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                       +|+.+++||+++|++.  + ++..+++.++|++|++.
T Consensus       221 ~~Ei~~a~W~~~del~~--l-p~~~sia~~li~~~~~~  255 (256)
T PRK00241        221 PKEIADAQWFRYDELPL--L-PPSGTIARRLIEDTVAL  255 (256)
T ss_pred             cccEEEEEEECHHHCcc--c-CCchHHHHHHHHHHHHh
Confidence             7889999999999984  3 45667899999999874

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=100.00  E-value=1.2e-39  Score=295.26  Aligned_cols=242  Identities=31%  Similarity=0.420  Sum_probs=186.9

Q ss_pred             Ccchhhhcccccch-hhceeecccCCccceeeEEeecCCCCccccccccccccccccccccccccccceeecceeecccc
Q 023914            1 MLKSVQILGSSSGF-LSLILKKSHNSCYGLSFVAVSTNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCFRASRVCATRS   79 (275)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   79 (275)
                      |++|.|+.+|.||+ ++++.++.++.+ +.|++-++.+             -+   .+.-...++.  .|.+.|+..-  
T Consensus        67 ~~~a~~~~~~~sg~~~~~~~~~~~~e~-~v~~~~~~~~-------------e~---~l~~~~~g~~--~F~~~r~~~~--  125 (345)
T KOG3084|consen   67 MLDAVRIPGWESGLVISQDLTKDRKES-SVSYIGSSLN-------------ES---QLTSSLGGRI--SFVPLRMSMS--  125 (345)
T ss_pred             chhheecccccccceeeehhccCcccc-cceecccchh-------------hh---hhcccCCCce--eeccchhhcc--
Confidence            78999999999999 778867777664 4443332222             11   1111111111  7877777543  


Q ss_pred             cccCCCCCc-cHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecC--CCC--CccccCCcEEEEEEE-eeC-C
Q 023914           80 ESNQDATSS-HPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICT--VCG--KIAYQNPKMVVGCLI-EHD-K  152 (275)
Q Consensus        80 ~~~~~~~~~-~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~--~Cg--~~~y~~p~~~V~viI-~~~-~  152 (275)
                       +.++.++. ++.+.|+++++|+++++|||.||+++...    ++|.+..|.  .|.  ...||+.+++|++++ +++ .
T Consensus       126 -~~~~~~d~~~~~a~ars~l~W~skykFCp~CG~~tkp~----e~g~k~~Cs~~~C~~~n~~yPr~dPvVIm~li~~d~~  200 (345)
T KOG3084|consen  126 -LPGSDEDARSLTAVARSLLDWVSKYKFCPGCGSPTKPE----EAGTKLQCSDETCPSCNVIYPRTDPVVIMLLIDHDGK  200 (345)
T ss_pred             -CCCChhhhhcHHHHHHHHHHHHHHhccCcccCCCcccc----cCCccceeecccCCcCCeeccCCCCeEEEEEEcCCCC
Confidence             44555555 89999999999999999999999999887    677788888  688  899999888887655 444 5


Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC-CCCEEEEEEEEEEcC-CCCCCC
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP-RIGQIYIIFLAKLKR-PHFSPG  230 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~-~~~~~~~~f~a~~~~-~e~~~~  230 (275)
                      ++||.|+.+.+ +|+|+++|||+|+|||+||||+||++||+|++|+.+.|+.+|+|| .+.++|+++.+-... +++..+
T Consensus       201 ~~LL~R~~r~~-~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~SLMIgc~ala~~~~~I~vd  279 (345)
T KOG3084|consen  201 HALLGRQKRYP-PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQSLMIGCLALAKLNGKISVD  279 (345)
T ss_pred             EeeeecccCCC-CchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchHHHHHHHHHHhhCCccccC
Confidence            67777766665 899999999999999999999999999999999999999999999 888899887666544 555554


Q ss_pred             --CCceeEEEecCCCCCC---------------CCCCCcHHHHHHHHHHHHHhhcc
Q 023914          231 --PESSECRLFALDEIPF---------------DSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       231 --~E~~d~~W~~~deL~~---------------~~l~~~s~~~al~li~~~l~~~~  269 (275)
                        .|.+|++||+.+|+..               .-+.+++..+|++||.+|+....
T Consensus       280 ~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~~~aIA~qLI~~~~~~~~  335 (345)
T KOG3084|consen  280 KDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPPPFAIAHQLILHWVGFVP  335 (345)
T ss_pred             cchhhhhcccccHHHHHHHHHhcCCccccccCcceecCChhHHHHHHHHHHHccch
Confidence              4999999999988521               12457889999999999997643

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.95  E-value=2.9e-27  Score=192.43  Aligned_cols=128  Identities=53%  Similarity=1.031  Sum_probs=116.1

Q ss_pred             cCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe
Q 023914          129 CTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI  208 (275)
Q Consensus       129 C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~  208 (275)
                      |+.||+++|++|.++|++++.++++|||++|...+..|.|++|||++|.||++++|++||++||||+++....+++.++.
T Consensus         1 c~~~~~~~~~~~~~~v~~ii~~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~   80 (130)
T cd04511           1 CPDCGYIHYQNPKIIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSV   80 (130)
T ss_pred             CCCCccccCCCCcEEEEEEEecCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEec
Confidence            99999999999999999998888999999998777779999999999999999999999999999999988888888888


Q ss_pred             CCCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          209 PRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       209 ~~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                      +..+..+++|.+++.++.+..+.|..+++|+++++|+...+++++.+.
T Consensus        81 ~~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~l~~~~~~~  128 (130)
T cd04511          81 PHISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFPTVRR  128 (130)
T ss_pred             CCceEEEEEEEEEEcCCcccCCcchhceEEECHHHCCchhcccccccc
Confidence            877788999999998776666788889999999999987888887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.87  E-value=1.6e-21  Score=162.67  Aligned_cols=115  Identities=36%  Similarity=0.579  Sum_probs=98.0

Q ss_pred             CCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC-
Q 023914          133 GKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI-  211 (275)
Q Consensus       133 g~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~-  211 (275)
                      ....|++|.++|.+++..+++|||+||...|..|.|++|||+||.|||+++||+||++||||++++.++++++++.+.. 
T Consensus         2 ~~~~~~~p~~~v~~~i~~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd   81 (145)
T COG1051           2 LAMGYRTPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRD   81 (145)
T ss_pred             ccccCCCcceeeeEEEEeCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence            3467889999999999998999999999999899999999999999999999999999999999999999999987653 


Q ss_pred             ---CEEEEEEEEEEcCCCCCCC--CCceeEEEecCCCCCCC
Q 023914          212 ---GQIYIIFLAKLKRPHFSPG--PESSECRLFALDEIPFD  247 (275)
Q Consensus       212 ---~~~~~~f~a~~~~~e~~~~--~E~~d~~W~~~deL~~~  247 (275)
                         ++..+.|++....++....  ++..++.||+.++++..
T Consensus        82 ~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          82 PRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             CceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcccc
Confidence               3455566666655544433  47888999999999964

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.4e-20  Score=152.10  Aligned_cols=120  Identities=27%  Similarity=0.457  Sum_probs=92.9

Q ss_pred             EEEE-EEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCC----CEEE
Q 023914          143 VVGC-LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRI----GQIY  215 (275)
Q Consensus       143 ~V~v-iI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~----~~~~  215 (275)
                      +|.+ +++.++++||++|...+.+|.|.+|||++|.|||+++||.||++||||+++....+++....  +..    +...
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTLD   82 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEEE
Confidence            3444 44567899999998776678999999999999999999999999999999988887776532  211    1233


Q ss_pred             EEEEEEEcCCCCCCC-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHH
Q 023914          216 IIFLAKLKRPHFSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYF  265 (275)
Q Consensus       216 ~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l  265 (275)
                      ++|.+.+.++....+ +|+.+++|+++++++...+.+++.+.+++   +|+
T Consensus        83 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~---~~~  130 (130)
T cd04681          83 LFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVE---RWL  130 (130)
T ss_pred             EEEEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHH---hhC
Confidence            467788765544333 78899999999999866788888887776   663

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.84  E-value=1.8e-20  Score=155.82  Aligned_cols=112  Identities=21%  Similarity=0.265  Sum_probs=89.5

Q ss_pred             ccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC----
Q 023914          135 IAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR----  210 (275)
Q Consensus       135 ~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~----  210 (275)
                      ..|+.|.++|.+++.++++|||+||...+..|.|.+|||++|.|||+++||+||++||||+++...++++..+..+    
T Consensus         3 ~~~~~p~~~v~~vi~~~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~   82 (144)
T PLN02325          3 TGEPIPRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEP   82 (144)
T ss_pred             CCCCCCeEEEEEEEEcCCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCC
Confidence            4578899999999988899999999876667899999999999999999999999999999999888887654321    


Q ss_pred             --CCEEEEEEEEEEcCCCCC---CC-CCceeEEEecCCCCCC
Q 023914          211 --IGQIYIIFLAKLKRPHFS---PG-PESSECRLFALDEIPF  246 (275)
Q Consensus       211 --~~~~~~~f~a~~~~~e~~---~~-~E~~d~~W~~~deL~~  246 (275)
                        .+...++|.+...++...   .+ +|..+++||++++|+.
T Consensus        83 ~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~  124 (144)
T PLN02325         83 KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE  124 (144)
T ss_pred             CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence              123445677776554321   12 4567899999999994

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=3.5e-20  Score=154.01  Aligned_cols=115  Identities=21%  Similarity=0.346  Sum_probs=88.7

Q ss_pred             CCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEEe-------
Q 023914          139 NPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLDI-------  208 (275)
Q Consensus       139 ~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~~-------  208 (275)
                      .|.++|.++|.+ +++|||+||...|.+|.|.+|||++|.|||+++|++||++||||+++...  ++++....       
T Consensus        10 ~p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~   89 (144)
T cd03430          10 TPLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFF   89 (144)
T ss_pred             CCeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccc
Confidence            456677777754 58999999987777899999999999999999999999999999998766  66665431       


Q ss_pred             -CC--CCEEEEEEEEEEcCCCCC-CCCCceeEEEecCCCCCCCCCCCcH
Q 023914          209 -PR--IGQIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSS  253 (275)
Q Consensus       209 -~~--~~~~~~~f~a~~~~~e~~-~~~E~~d~~W~~~deL~~~~l~~~s  253 (275)
                       +.  .+...++|.+....+++. .++|..+++|+++++++......|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~  138 (144)
T cd03430          90 GDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPN  138 (144)
T ss_pred             cCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHH
Confidence             11  134567788887766543 4578999999999999865433333

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.83  E-value=1.8e-20  Score=153.06  Aligned_cols=122  Identities=25%  Similarity=0.300  Sum_probs=98.2

Q ss_pred             EEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEE
Q 023914          143 VVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAK  221 (275)
Q Consensus       143 ~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~  221 (275)
                      +|.+.+.+ ++++||++|+..+ .|.|++|||+++.|||+++||+||++||||+++..+.+++...+...+..+++|.+.
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~-~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~   80 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFP-PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFPSSLMLGFTAE   80 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCC-CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCCCceEEEEEEEE
Confidence            44444544 4899999998765 789999999999999999999999999999999988888887776667788889999


Q ss_pred             EcCCCCCCC-CCceeEEEecCCCCCCC----CCCCcHHHHHHHHHHHHH
Q 023914          222 LKRPHFSPG-PESSECRLFALDEIPFD----SLAFSSISVTLQLVRFYF  265 (275)
Q Consensus       222 ~~~~e~~~~-~E~~d~~W~~~deL~~~----~l~~~s~~~al~li~~~l  265 (275)
                      ...+++..+ +|+.+++|++++++...    .-.++..+.+..+++.|+
T Consensus        81 ~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~  129 (131)
T cd03429          81 ADSGEIVVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAWL  129 (131)
T ss_pred             EcCCcccCCchhhhccEeecHHHHhhcccCCccCCCcchHHHHHHHHHh
Confidence            876665544 78889999999997642    223455666777777776

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8.1e-20  Score=146.99  Aligned_cols=107  Identities=26%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             CcEEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC----CCCEE
Q 023914          140 PKMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP----RIGQI  214 (275)
Q Consensus       140 p~~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~----~~~~~  214 (275)
                      |++.|.+++ +.+++|||++|...+..|.|.+|||++|+|||+++||+||++||||+++...++++.....    ..+..
T Consensus         1 ~~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04679           1 PRVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWV   80 (125)
T ss_pred             CceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEE
Confidence            445566555 4568999999987666799999999999999999999999999999999888887765532    23456


Q ss_pred             EEEEEEEEcCCCCC--CCCCceeEEEecCCCCCC
Q 023914          215 YIIFLAKLKRPHFS--PGPESSECRLFALDEIPF  246 (275)
Q Consensus       215 ~~~f~a~~~~~e~~--~~~E~~d~~W~~~deL~~  246 (275)
                      .++|.+....+...  ..+|..+++|+++++++.
T Consensus        81 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          81 APVYLAENFSGEPRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             EEEEEEeecCCccccCCCccccEEEEeCHHHCCc
Confidence            67788887665432  236889999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.83  E-value=8.7e-20  Score=148.34  Aligned_cols=123  Identities=24%  Similarity=0.263  Sum_probs=94.6

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC----CEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI----GQIYIIF  218 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~----~~~~~~f  218 (275)
                      +|++++.+++++||++|... .++.|.+|||++|+|||+++||.||++||||+++....+++.+.+..+    ....++|
T Consensus         2 ~v~~ii~~~~~vLlv~r~~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f   80 (134)
T cd03675           2 TVAAVVERDGRFLLVEEETD-GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF   80 (134)
T ss_pred             eEEEEEEECCEEEEEEEccC-CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence            56778888999999999876 478999999999999999999999999999999988887776654322    2345678


Q ss_pred             EEEEcCCCC--CCCCCceeEEEecCCCCCCCC--CCCcHHHHHHHHHHHHHhhcc
Q 023914          219 LAKLKRPHF--SPGPESSECRLFALDEIPFDS--LAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       219 ~a~~~~~e~--~~~~E~~d~~W~~~deL~~~~--l~~~s~~~al~li~~~l~~~~  269 (275)
                      .+.+..+..  ..++|+.++.|++.++++...  +..+...   +.|.+|+..++
T Consensus        81 ~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~---~~i~~~l~~~~  132 (134)
T cd03675          81 AAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVL---RCIEDYLAGRR  132 (134)
T ss_pred             EEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHH---HHHHHHHhcCc
Confidence            888776543  334788899999999998643  3344444   44558887643

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.82  E-value=7.2e-20  Score=146.61  Aligned_cols=113  Identities=27%  Similarity=0.375  Sum_probs=88.6

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----CC----CCEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----PR----IGQI  214 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----~~----~~~~  214 (275)
                      ++.+++.++++|||++|...+.+|.|.+|||++|.||++++||+||++||||+++....+++...+    +.    .+..
T Consensus         2 ~~~~ii~~~~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (128)
T cd04684           2 GAYAVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHL   81 (128)
T ss_pred             eeEEEEEeCCEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEE
Confidence            456667777999999999776679999999999999999999999999999999988887776543    21    1456


Q ss_pred             EEEEEEEEcCCCC---CCCCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          215 YIIFLAKLKRPHF---SPGPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       215 ~~~f~a~~~~~e~---~~~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                      .++|.+....+..   ..++|..+++|++++++..... .|....
T Consensus        82 ~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~-~~~~~~  125 (128)
T cd04684          82 CVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLL-SPLVLW  125 (128)
T ss_pred             EEEEEEEEecCccccCCCCCCceeeEEECHHHhhccCC-CHHHHH
Confidence            6788888876653   3447788999999999986433 344443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.82  E-value=1.2e-19  Score=153.64  Aligned_cols=116  Identities=16%  Similarity=0.247  Sum_probs=87.4

Q ss_pred             CCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccc--cceeeEEEE--eC----
Q 023914          139 NPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLD--IP----  209 (275)
Q Consensus       139 ~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~--~~~~~~~~~--~~----  209 (275)
                      .|.++|.++|.+ +++|||+||...+..|.|++|||+||+|||+++||+||++||||+++.  ..++++.+.  +.    
T Consensus        15 ~~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~   94 (159)
T PRK15434         15 TPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   94 (159)
T ss_pred             CceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccC
Confidence            345677777765 589999999876667999999999999999999999999999999874  335555322  11    


Q ss_pred             ----CCCEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCCCCCCCcHH
Q 023914          210 ----RIGQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPFDSLAFSSI  254 (275)
Q Consensus       210 ----~~~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~~~l~~~s~  254 (275)
                          ..+.++++|.+....+++... +|..+++|+++++++......+..
T Consensus        95 ~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~  144 (159)
T PRK15434         95 GTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANS  144 (159)
T ss_pred             CCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHH
Confidence                113456678888877766654 689999999999998644434443

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=3.4e-19  Score=145.19  Aligned_cols=124  Identities=26%  Similarity=0.347  Sum_probs=95.2

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC----CEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI----GQIYII  217 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~----~~~~~~  217 (275)
                      ++..+++.+++++||++|...+..|.|.+|||++|.||++++||+||++||||+++...++++.+.+..+    ...++.
T Consensus         2 ~~~~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T cd03427           2 LTTLCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV   81 (137)
T ss_pred             eEEEEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEE
Confidence            3455667777999999998766678999999999999999999999999999999998888887765433    345567


Q ss_pred             EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914          218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~  269 (275)
                      |.+....++....+|..+++|+++++++...+. +.....+.   .+++.+.
T Consensus        82 f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~~~  129 (137)
T cd03427          82 FLATEFEGEPLKESEEGILDWFDIDDLPLLPMW-PGDREWLP---LMLEKNL  129 (137)
T ss_pred             EEECCcccccCCCCccccceEEcHhhcccccCC-CCcHHHHH---HHhCCCe
Confidence            777766665554566678999999999865554 44444444   7776443

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=1.6e-19  Score=143.70  Aligned_cols=108  Identities=30%  Similarity=0.513  Sum_probs=85.6

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--------CCEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--------IGQI  214 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--------~~~~  214 (275)
                      +|.+++.+++++||++|...+..+.|.+|||++++|||+++||+||++||||+++....+++...+..        .+..
T Consensus         2 ~v~~ii~~~~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd04673           2 AVGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYV   81 (122)
T ss_pred             cEEEEEEECCEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEE
Confidence            45556666789999999876667899999999999999999999999999999988777776554321        1245


Q ss_pred             EEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCC
Q 023914          215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLA  250 (275)
Q Consensus       215 ~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~  250 (275)
                      ++.|.+....++....+|..+++|++++++....+.
T Consensus        82 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~  117 (122)
T cd04673          82 LIDFLCRYLGGEPVAGDDALDARWVPLDELAALSLT  117 (122)
T ss_pred             EEEEEEEeCCCcccCCcccceeEEECHHHHhhCcCC
Confidence            567888877666655688899999999999865443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.9e-19  Score=142.96  Aligned_cols=102  Identities=25%  Similarity=0.340  Sum_probs=80.9

Q ss_pred             EEEEEeeCCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC-CEEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI-GQIYIIFLA  220 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~-~~~~~~f~a  220 (275)
                      |++++.++++|||+||...+  .+|.|++|||++|+||++++||+||++||||+++....++..+..+.. ...+++|.+
T Consensus         3 v~~vi~~~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~   82 (117)
T cd04691           3 VVGVLFSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYYVV   82 (117)
T ss_pred             EEEEEEECCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEEEE
Confidence            33344456999999997653  579999999999999999999999999999999877777776655443 345567777


Q ss_pred             EEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          221 KLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       221 ~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                      ....+.+.. +|..+++|+++++++.
T Consensus        83 ~~~~~~~~~-~E~~~~~W~~~~~l~~  107 (117)
T cd04691          83 TFWQGEIPA-QEAAEVHWMTANDIVL  107 (117)
T ss_pred             EEecCCCCc-ccccccEEcCHHHcch
Confidence            776665443 7888999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3e-19  Score=143.79  Aligned_cols=108  Identities=27%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             CcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC-------CC
Q 023914          140 PKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP-------RI  211 (275)
Q Consensus       140 p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~-------~~  211 (275)
                      |.++|.+++.+ +++|||+||..  .+|.|++|||+++.|||+++||.||++||||+++...+++....+.       ..
T Consensus         1 p~~~v~~~i~~~~~~iLL~r~~~--~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           1 PLVTVGALIYAPDGRILLVRTTK--WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             CccEEEEEEECCCCCEEEEEccC--CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence            34566666654 78999998764  3689999999999999999999999999999999877766543221       12


Q ss_pred             CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          212 GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      +.+++.|.+....+++..++|..+++|++++++...++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~  116 (125)
T cd04696          79 HFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALDYPL  116 (125)
T ss_pred             EEEEEEEEEEecCCcccCCcccceeEEECHHHHhcCCC
Confidence            34556788887665666678899999999999985543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.3e-19  Score=142.16  Aligned_cols=105  Identities=29%  Similarity=0.388  Sum_probs=81.8

Q ss_pred             EEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccc--cceeeEEEEeCC---CCEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLDIPR---IGQIYI  216 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~--~~~~~~~~~~~~---~~~~~~  216 (275)
                      +|.+++.++++|||+||...+ .+|.|++|||++++|||+++||+||++||||+++.  .+.+++.+....   .+.+++
T Consensus         2 ~v~~vi~~~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   81 (120)
T cd04683           2 AVYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGL   81 (120)
T ss_pred             cEEEEEEECCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEE
Confidence            566777888999999987653 37899999999999999999999999999999987  556666554332   245566


Q ss_pred             EEEEEEcCCCCC--CCCCceeEEEecCCCCCCC
Q 023914          217 IFLAKLKRPHFS--PGPESSECRLFALDEIPFD  247 (275)
Q Consensus       217 ~f~a~~~~~e~~--~~~E~~d~~W~~~deL~~~  247 (275)
                      +|.+....+...  ..+|..+++|+++++++..
T Consensus        82 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  114 (120)
T cd04683          82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDD  114 (120)
T ss_pred             EEEEEeecCccccCCCCcEeeEEEEchHHCcch
Confidence            777776555432  2367889999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.4e-19  Score=142.21  Aligned_cols=105  Identities=26%  Similarity=0.299  Sum_probs=81.6

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEc
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLK  223 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~  223 (275)
                      ++++++++++|||++|.... .+.|++|||++|.|||+++||+||++||||+++....+++.+..+  +...++|.+...
T Consensus         4 ~~ii~~~~~~vLL~~r~~~~-~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~--~~~~~~f~~~~~   80 (121)
T cd04669           4 SIVIINDQGEILLIRRIKPG-KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQN--GRTEHYFLARVI   80 (121)
T ss_pred             EEEEEeCCCEEEEEEEecCC-CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeC--CcEEEEEEEEEE
Confidence            34455555899999987543 688999999999999999999999999999999887877776653  445678888877


Q ss_pred             CCCCCC----------CCCceeEEEecCCCCCCCCCCC
Q 023914          224 RPHFSP----------GPESSECRLFALDEIPFDSLAF  251 (275)
Q Consensus       224 ~~e~~~----------~~E~~d~~W~~~deL~~~~l~~  251 (275)
                      ++++..          +++..+++|+++++++..++.+
T Consensus        81 ~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          81 SGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             CCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence            665332          2334578999999999765543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.1e-19  Score=143.26  Aligned_cols=102  Identities=25%  Similarity=0.403  Sum_probs=82.8

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKL  222 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~  222 (275)
                      +.+++++.+++|||++|...+..+.|.+|||++|.||++++||.||++||||+++...+++.....+ .+..+++|.++.
T Consensus         3 ~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~-~~~~~~~f~a~~   81 (123)
T cd04671           3 VAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG-GSWFRFVFTGNI   81 (123)
T ss_pred             EEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC-CeEEEEEEEEEE
Confidence            3445556689999999987666789999999999999999999999999999999888877765433 456677888988


Q ss_pred             cCCCCCC----CCCceeEEEecCCCCC
Q 023914          223 KRPHFSP----GPESSECRLFALDEIP  245 (275)
Q Consensus       223 ~~~e~~~----~~E~~d~~W~~~deL~  245 (275)
                      .++++..    ++|+.+++|++.++++
T Consensus        82 ~~g~~~~~~~~~~e~~~~~W~~~~el~  108 (123)
T cd04671          82 TGGDLKTEKEADSESLQARWYSNKDLP  108 (123)
T ss_pred             eCCeEccCCCCCcceEEEEEECHHHCC
Confidence            7765332    3567799999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=7e-19  Score=142.13  Aligned_cols=108  Identities=29%  Similarity=0.396  Sum_probs=85.1

Q ss_pred             CcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----CCCCEE
Q 023914          140 PKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----PRIGQI  214 (275)
Q Consensus       140 p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----~~~~~~  214 (275)
                      |.++|.+++.+ ++++||++|...+..|.|.+|||+++.|||+++|++||++||||+++...++++....    ...+..
T Consensus         1 p~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04678           1 PRVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYV   80 (129)
T ss_pred             CceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEE
Confidence            45677776655 5899999998765679999999999999999999999999999999988777765432    223456


Q ss_pred             EEEEEEEEcCCCCCC----CCCceeEEEecCCCCCCC
Q 023914          215 YIIFLAKLKRPHFSP----GPESSECRLFALDEIPFD  247 (275)
Q Consensus       215 ~~~f~a~~~~~e~~~----~~E~~d~~W~~~deL~~~  247 (275)
                      .++|.+....++...    .+|..+++|+++++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            677888877654322    257788999999999954

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.80  E-value=6.5e-19  Score=145.85  Aligned_cols=112  Identities=22%  Similarity=0.304  Sum_probs=88.6

Q ss_pred             ccccCCcEEEEEEEe-eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC-
Q 023914          135 IAYQNPKMVVGCLIE-HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG-  212 (275)
Q Consensus       135 ~~y~~p~~~V~viI~-~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~-  212 (275)
                      -+||....+|++++. .++++||++|...+.+|.|++|||++++|||+++||+||++||||+++...++++.+.+..+. 
T Consensus         7 ~~~~~~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (142)
T cd04700           7 HHVEVEARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG   86 (142)
T ss_pred             cCcceeeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence            467777788876665 477999999876666799999999999999999999999999999999888887766533222 


Q ss_pred             --EEEEEEEEEEcCCCC--CCCCCceeEEEecCCCCCC
Q 023914          213 --QIYIIFLAKLKRPHF--SPGPESSECRLFALDEIPF  246 (275)
Q Consensus       213 --~~~~~f~a~~~~~e~--~~~~E~~d~~W~~~deL~~  246 (275)
                        ...++|.+.......  ...+|+.+++||+++++..
T Consensus        87 ~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  124 (142)
T cd04700          87 VLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQ  124 (142)
T ss_pred             cEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhh
Confidence              334678888765432  3347899999999999884

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.79  E-value=9.1e-19  Score=144.11  Aligned_cols=110  Identities=24%  Similarity=0.284  Sum_probs=79.3

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE--------EEEeCC
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA--------QLDIPR  210 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~--------~~~~~~  210 (275)
                      ..++++++.++++|||+||+..+  .+|.|++|||++|+|||+++||.||++||||+++.......        ...++.
T Consensus         4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   83 (141)
T PRK15472          4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYAD   83 (141)
T ss_pred             eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecC
Confidence            45667777788999999987542  46999999999999999999999999999999874332110        111222


Q ss_pred             CC--EE---EEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCC
Q 023914          211 IG--QI---YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLA  250 (275)
Q Consensus       211 ~~--~~---~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~  250 (275)
                      ..  ..   +++|.+....+++.+++|..+++|++++|++...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~  128 (141)
T PRK15472         84 GRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVHYDLN  128 (141)
T ss_pred             CCceeEEEEEEEEEeecCCCcccCChhhheEEEccHHHhcccccc
Confidence            21  22   233445545555666789999999999999965443

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.1e-18  Score=141.16  Aligned_cols=108  Identities=27%  Similarity=0.294  Sum_probs=82.1

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----------CCC
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----------PRI  211 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----------~~~  211 (275)
                      +.+.+++.++++|||++|.... .+.|.+|||++|.|||+++||.||++||||+++...+++....+          ...
T Consensus         2 ~~a~~iv~~~~~vLl~~r~~~~-~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04687           2 NSAKAVIIKNDKILLIKHHDDG-GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF   80 (128)
T ss_pred             cEEEEEEEECCEEEEEEEEcCC-CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence            4556666778999999997543 57899999999999999999999999999999877665544332          123


Q ss_pred             CEEEEEEEEEEcCCCC-----CCCCCceeEEEecCCCCCCCCCC
Q 023914          212 GQIYIIFLAKLKRPHF-----SPGPESSECRLFALDEIPFDSLA  250 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~-----~~~~E~~d~~W~~~deL~~~~l~  250 (275)
                      +..+++|.+....+..     .+++|..+++|+++++++...+.
T Consensus        81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~  124 (128)
T cd04687          81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLY  124 (128)
T ss_pred             eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCccccc
Confidence            4566788888876542     23445568999999999865543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=9.9e-19  Score=138.85  Aligned_cols=98  Identities=30%  Similarity=0.401  Sum_probs=80.3

Q ss_pred             EEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccc-cceeeEEEEeCC--CCEEEEEEEEEE
Q 023914          146 CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE-VQSPFAQLDIPR--IGQIYIIFLAKL  222 (275)
Q Consensus       146 viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~-~~~~~~~~~~~~--~~~~~~~f~a~~  222 (275)
                      ++++.++++||++|+..   +.|.+|||++++|||+++||+||++||||+.+. ....++.+....  ....+++|.+..
T Consensus         6 ~i~~~~~~vLL~~r~~~---~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~   82 (120)
T cd04680           6 VVTDADGRVLLVRHTYG---PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRARA   82 (120)
T ss_pred             EEECCCCeEEEEEECCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEecc
Confidence            34456789999998743   489999999999999999999999999999998 888888766543  346677888888


Q ss_pred             cCCC-CCCCCCceeEEEecCCCCCC
Q 023914          223 KRPH-FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       223 ~~~e-~~~~~E~~d~~W~~~deL~~  246 (275)
                      ..++ ...++|..+++|+++++++.
T Consensus        83 ~~~~~~~~~~E~~~~~w~~~~~l~~  107 (120)
T cd04680          83 DTQPVIRPSHEISEARFFPPDALPE  107 (120)
T ss_pred             cCCCccCCcccEEEEEEECHHHCcc
Confidence            7665 33458889999999999995

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.1e-18  Score=140.28  Aligned_cols=104  Identities=38%  Similarity=0.568  Sum_probs=83.0

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC---C---C-C
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP---R---I-G  212 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~---~---~-~  212 (275)
                      |.+.|.+++.+++++||++|+.   .|.|.+|||++++|||+++||+||++||||+++....+++.....   .   . +
T Consensus         1 p~~~v~~~i~~~~~vLL~~~~~---~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~   77 (123)
T cd04672           1 PKVDVRAAIFKDGKILLVREKS---DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQ   77 (123)
T ss_pred             CcceEEEEEEECCEEEEEEEcC---CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceE
Confidence            4566777777779999999874   689999999999999999999999999999998776766654321   1   1 2


Q ss_pred             EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          213 QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       213 ~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                      ...++|.+....+.+...+|..+++|+++++++.
T Consensus        78 ~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~  111 (123)
T cd04672          78 VYKLFFLCEILGGEFKPNIETSEVGFFALDDLPP  111 (123)
T ss_pred             EEEEEEEEEecCCcccCCCceeeeEEECHHHCcc
Confidence            3456788887766666668889999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=1.2e-18  Score=140.06  Aligned_cols=104  Identities=28%  Similarity=0.371  Sum_probs=84.0

Q ss_pred             CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC------CEEEEEEEEEEcCC
Q 023914          152 KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI------GQIYIIFLAKLKRP  225 (275)
Q Consensus       152 ~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~------~~~~~~f~a~~~~~  225 (275)
                      ++|||++|..   .+.|.+|||++++|||+++||.||++||||+++.....++.+.++.+      ...+++|.+....+
T Consensus        16 ~~vLl~~~~~---~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T cd03673          16 IEVLLIHRPR---GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGG   92 (131)
T ss_pred             eEEEEEEcCC---CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceEEEEEEEEEcCC
Confidence            8999999874   37899999999999999999999999999999988888776655332      35566788877666


Q ss_pred             CCC--CCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          226 HFS--PGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       226 e~~--~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      +..  .++|..+++|++++++.. .+.++..+.++.
T Consensus        93 ~~~~~~~~E~~~~~W~~~~el~~-~~~~~~~~~~l~  127 (131)
T cd03673          93 EFTPQPDEEVDEVRWLPPDEARD-RLSYPNDRELLR  127 (131)
T ss_pred             CcccCCCCcEEEEEEcCHHHHHH-HcCCHhHHHHHH
Confidence            655  458889999999999985 355777776665

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.2e-18  Score=140.75  Aligned_cols=104  Identities=28%  Similarity=0.398  Sum_probs=76.8

Q ss_pred             EEEEEEeeC-CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE------EEE---eCC--
Q 023914          143 VVGCLIEHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA------QLD---IPR--  210 (275)
Q Consensus       143 ~V~viI~~~-~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~------~~~---~~~--  210 (275)
                      +.+++++++ ++|||++|+.   .|.|.+|||++|+||++++||.||++||||+++......+      ...   .+.  
T Consensus         5 ~~~~v~~~~~~~vLLv~r~~---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (138)
T cd03674           5 ASAFVVNPDRGKVLLTHHRK---LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG   81 (138)
T ss_pred             EEEEEEeCCCCeEEEEEEcC---CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence            334444555 8999999874   5889999999999999999999999999999886665432      111   111  


Q ss_pred             ---CCEEEEEEEEEEcCCCCC--CCCCceeEEEecCCCCCCCCC
Q 023914          211 ---IGQIYIIFLAKLKRPHFS--PGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       211 ---~~~~~~~f~a~~~~~e~~--~~~E~~d~~W~~~deL~~~~l  249 (275)
                         ...+.++|.+....++..  .++|..+++|++++++....+
T Consensus        82 ~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  125 (138)
T cd03674          82 VPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLEL  125 (138)
T ss_pred             CCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccC
Confidence               123446788887666544  457889999999999975444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=1.9e-18  Score=138.71  Aligned_cols=108  Identities=27%  Similarity=0.302  Sum_probs=81.8

Q ss_pred             EEEEEEeeCCeEEEEEeccCC---CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccce--eeEEEEeCCCCEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP---SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS--PFAQLDIPRIGQIYII  217 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p---~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~--~~~~~~~~~~~~~~~~  217 (275)
                      ++++++.++++|||++|...|   .+|.|++|||+++.||++++||.||++||||+++....  +...+..+.....+++
T Consensus         3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   82 (122)
T cd04682           3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV   82 (122)
T ss_pred             eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence            344455566999999998653   46999999999999999999999999999999986433  3333333344567778


Q ss_pred             EEEEEcCCC--CCCCCCceeEEEecCCCCCCCCCC
Q 023914          218 FLAKLKRPH--FSPGPESSECRLFALDEIPFDSLA  250 (275)
Q Consensus       218 f~a~~~~~e--~~~~~E~~d~~W~~~deL~~~~l~  250 (275)
                      |.+......  ....+|+.+++|++++++......
T Consensus        83 f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  117 (122)
T cd04682          83 FVVPLTAREDAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             EEEEEecCCCccccCchhheeecccHHHHhhcccc
Confidence            888877653  234588999999999998765443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.76  E-value=2.2e-18  Score=142.91  Aligned_cols=125  Identities=21%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             ccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc--ccceeeEE-----EE--
Q 023914          137 YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV--EVQSPFAQ-----LD--  207 (275)
Q Consensus       137 y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v--~~~~~~~~-----~~--  207 (275)
                      |..+..+++++++.+++|||++|...  +|.|++|||++|.|||+++||+||++||||+++  ....+++.     +.  
T Consensus         4 ~~~~~~v~~vi~~~~~~vLl~~r~~~--~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (148)
T PRK09438          4 YKRPVSVLVVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIF   81 (148)
T ss_pred             ccCceEEEEEEEeCCCeEEEEEecCC--CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccc
Confidence            44444555556667889999988643  578999999999999999999999999999998  44333221     00  


Q ss_pred             ------eC--CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          208 ------IP--RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       208 ------~~--~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                            ++  ..+...++|.+....+.....+|..+++|++++++.... ..++.+.+++   .+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-~~~~~~~~l~---~~~~~  145 (148)
T PRK09438         82 PHWRHRYAPGVTRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT-KSWSNAEAIE---QLVIR  145 (148)
T ss_pred             hhhhhccccccCCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh-cChhHHHHHH---HHHHH
Confidence                  01  113456778887655432223588999999999998543 3566666555   55543

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=4.1e-18  Score=135.26  Aligned_cols=103  Identities=24%  Similarity=0.385  Sum_probs=81.3

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccc--ceeeEEEEeCC---C--CEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV--QSPFAQLDIPR---I--GQIY  215 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~--~~~~~~~~~~~---~--~~~~  215 (275)
                      +++++++.++++||+||+   ..+.|.+|||++++||++++||+||++||||+++..  ++.++.+..+.   .  ....
T Consensus         3 ~~~~v~~~~~~vLl~~r~---~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (118)
T cd04690           3 AAALILVRDGRVLLVRKR---GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRA   79 (118)
T ss_pred             EEEEEEecCCeEEEEEEC---CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEE
Confidence            455566777899999987   357899999999999999999999999999999877  77777665431   1  3456


Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       216 ~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      ++|.+.... .+...+|..+++|+++++++...+
T Consensus        80 ~~f~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~~  112 (118)
T cd04690          80 TVYVAELTG-EPVPAAEIEEIRWVDYDDPADDRL  112 (118)
T ss_pred             EEEEEcccC-CcCCCchhhccEEecHHHcccccc
Confidence            778887655 455567889999999999875444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.76  E-value=6.8e-18  Score=137.69  Aligned_cols=124  Identities=24%  Similarity=0.238  Sum_probs=91.6

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIYI  216 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~~  216 (275)
                      +..+++++++.++++||++|.+.+ .++.|++|||++|.||++++||+||++||||+.+..+.+++.+...  .....+.
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERIH   81 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccEE
Confidence            445566666777999999887655 3578999999999999999999999999999999877777765432  2234566


Q ss_pred             EEEEEEcCCC--CCC-CCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHh
Q 023914          217 IFLAKLKRPH--FSP-GPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       217 ~f~a~~~~~e--~~~-~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~  266 (275)
                      +|.+......  ... ++|..+++|++++++..    ..+..+....++.   .|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~~~~---~~~~  135 (137)
T cd03424          82 LFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGEIIDDATLIALL---LWLA  135 (137)
T ss_pred             EEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCCCcccHHHHHHH---HHHH
Confidence            7888876654  223 47889999999999864    2344455555444   5654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.1e-17  Score=134.77  Aligned_cols=105  Identities=25%  Similarity=0.277  Sum_probs=82.4

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----CC--CCEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----PR--IGQIYII  217 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----~~--~~~~~~~  217 (275)
                      |.+++.++++|||+|+..   .+.|.+|||++|.||++++||.||++||||+++...++++....    ..  .+...++
T Consensus         4 v~~vi~~~~~vLl~~~~~---~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04688           4 AAAIIIHNGKLLVQKNPD---ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFY   80 (126)
T ss_pred             EEEEEEECCEEEEEEeCC---CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEE
Confidence            445555677999999874   57899999999999999999999999999999988887776432    11  2345678


Q ss_pred             EEEEEcCCCCC--------CCCCceeEEEecCCCCCCCCCCC
Q 023914          218 FLAKLKRPHFS--------PGPESSECRLFALDEIPFDSLAF  251 (275)
Q Consensus       218 f~a~~~~~e~~--------~~~E~~d~~W~~~deL~~~~l~~  251 (275)
                      |.+...++...        .++|..+++|++++++...++.+
T Consensus        81 f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688          81 YLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             EEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence            88988776543        23688899999999999766544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.75  E-value=2.3e-17  Score=134.03  Aligned_cols=121  Identities=26%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f  218 (275)
                      .++.+++.++++|||++|.... .+|+|++|||++|.||++++|+.||++||||+++....+++...+.+.+  ..+++|
T Consensus         5 ~~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
T PRK10546          5 DVVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW   84 (135)
T ss_pred             EEEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence            3455666788999999987543 4799999999999999999999999999999998877777666554433  345567


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      .+....+++. ..|..+++|+++++++...+. +..+..++   .|++.
T Consensus        85 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~  128 (135)
T PRK10546         85 HVPDFHGELQ-AHEHQALVWCTPEEALRYPLA-PADIPLLE---AFMAL  128 (135)
T ss_pred             EEEEecCccc-ccccceeEEcCHHHcccCCCC-cCcHHHHH---HHHHh
Confidence            6665544432 246678999999999865443 44444444   66654

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.6e-17  Score=134.10  Aligned_cols=104  Identities=31%  Similarity=0.435  Sum_probs=75.0

Q ss_pred             CcEEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE----eC--CCC
Q 023914          140 PKMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD----IP--RIG  212 (275)
Q Consensus       140 p~~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~----~~--~~~  212 (275)
                      +.+++.+++ +.++++||++|..   .|.|.+|||+|++|||+++||.||++||||+++.....++.+.    +.  ...
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~---~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~   82 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSD---TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGD   82 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecC---CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCC
Confidence            344555444 5568999999874   3789999999999999999999999999999998877765432    11  111


Q ss_pred             ----EEEEEEEEEEcCCCCC-CCCCceeEEEecCCCCCC
Q 023914          213 ----QIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPF  246 (275)
Q Consensus       213 ----~~~~~f~a~~~~~e~~-~~~E~~d~~W~~~deL~~  246 (275)
                          ..+++|.+....+.+. ..+|..+++|+++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~  121 (132)
T cd04677          83 DEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPE  121 (132)
T ss_pred             cEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCcc
Confidence                2234444544444433 447888999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=5.8e-18  Score=136.86  Aligned_cols=114  Identities=23%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             cEEEEEEEee--CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE------eCC--
Q 023914          141 KMVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD------IPR--  210 (275)
Q Consensus       141 ~~~V~viI~~--~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~------~~~--  210 (275)
                      +.+.+++.+.  ++++||+||... .+|.|.+|||+++.||++++||.||++||||+.+....++....      +..  
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~-~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDK-YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG   80 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCC-CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc
Confidence            3455555566  799999999876 57999999999999999999999999999999986666555332      222  


Q ss_pred             CCEEEEEEEEEEcCCC-CCCCCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          211 IGQIYIIFLAKLKRPH-FSPGPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       211 ~~~~~~~f~a~~~~~e-~~~~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                      .+...++|.+...... ...++|..++.|++++++... +.+++.+.
T Consensus        81 ~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~-~~~~~~~~  126 (129)
T cd04664          81 RVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL-LLWESNRR  126 (129)
T ss_pred             eEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHH-HcChhhhh
Confidence            1245677888876654 344578889999999998742 34555444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.2e-17  Score=134.33  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CC----CCEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PR----IGQIY  215 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~----~~~~~  215 (275)
                      ..|.+++.+++++||+++.   ..+.|.+|||++|+|||+++||.||++||||+++...++++....  ..    .+..+
T Consensus         2 ~~~~~vi~~~~~vLlv~~~---~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (125)
T cd04689           2 LRARAIVRAGNKVLLARVI---GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEIN   78 (125)
T ss_pred             eEEEEEEEeCCEEEEEEec---CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEE
Confidence            3456666788999999986   357899999999999999999999999999999988887775542  11    12455


Q ss_pred             EEEEEEEcCCC----CCCCCCceeEEEecCCCCCC
Q 023914          216 IIFLAKLKRPH----FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       216 ~~f~a~~~~~e----~~~~~E~~d~~W~~~deL~~  246 (275)
                      ++|.+....+.    ...++|+.+++|++++++..
T Consensus        79 ~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04689          79 HIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSL  113 (125)
T ss_pred             EEEEEEcccccccCCccCccceEEEEEccHHHccc
Confidence            67887765432    22346788999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.74  E-value=2e-17  Score=155.81  Aligned_cols=111  Identities=25%  Similarity=0.434  Sum_probs=88.2

Q ss_pred             cccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE------EEEeC
Q 023914          136 AYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA------QLDIP  209 (275)
Q Consensus       136 ~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~------~~~~~  209 (275)
                      -||.+.++|.+++.++++|||++|...|..|.|.+|||++|+|||+++||+||++||||+++....+.+      .++.+
T Consensus       198 ~~~~~~vtv~avv~~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p  277 (340)
T PRK05379        198 PYPPTFVTVDAVVVQSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP  277 (340)
T ss_pred             CCCCcceEEEEEEEECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence            366677888888888999999999987778999999999999999999999999999999986554332      22233


Q ss_pred             C----CCEEEEEEEEEEcCCC---CCCCCCceeEEEecCCCCCC
Q 023914          210 R----IGQIYIIFLAKLKRPH---FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       210 ~----~~~~~~~f~a~~~~~e---~~~~~E~~d~~W~~~deL~~  246 (275)
                      .    .+...++|.+....++   +..++|..+++|++.+++..
T Consensus       278 ~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~  321 (340)
T PRK05379        278 GRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLA  321 (340)
T ss_pred             CCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhh
Confidence            2    2456677888776543   34568889999999999985

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.73  E-value=8.3e-17  Score=128.78  Aligned_cols=106  Identities=23%  Similarity=0.342  Sum_probs=78.9

Q ss_pred             EEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL  219 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~  219 (275)
                      +++++++.++++||.||+..+ ..|+|++|||++++||++++|+.||++||+|+++....+++...+.+++  ..+.+|.
T Consensus         7 ~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
T PRK10776          7 AVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWL   86 (129)
T ss_pred             EEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEE
Confidence            344444556799999998765 3799999999999999999999999999999998777766665554443  3345566


Q ss_pred             EEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          220 AKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      +....+.. ...|..+++|++.++++...+
T Consensus        87 ~~~~~~~~-~~~e~~~~~W~~~~~l~~~~~  115 (129)
T PRK10776         87 VESWEGEP-WGKEGQPGRWVSQVALNADEF  115 (129)
T ss_pred             EEEECCcc-CCccCCccEEecHHHCccCCC
Confidence            65543332 235677889999999996443

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.1e-17  Score=133.31  Aligned_cols=103  Identities=23%  Similarity=0.390  Sum_probs=74.7

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC-C-CCEEEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP-R-IGQIYIIFLAK  221 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~-~-~~~~~~~f~a~  221 (275)
                      ++++++.+++|||++|+.. .+|.|.+|||++|.|||+++||.||++||||+++....+++...+. . .....+.|.+.
T Consensus         6 ~~~v~~~~~~vLl~~r~~~-~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (127)
T cd04670           6 GGLVLNEKNEVLVVQERNK-TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYFICR   84 (127)
T ss_pred             EEEEEcCCCeEEEEEccCC-CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEEEEE
Confidence            3445566789999998755 4789999999999999999999999999999999877766644321 1 11222334555


Q ss_pred             EcC--CCCCC-CCCceeEEEecCCCCCCC
Q 023914          222 LKR--PHFSP-GPESSECRLFALDEIPFD  247 (275)
Q Consensus       222 ~~~--~e~~~-~~E~~d~~W~~~deL~~~  247 (275)
                      +..  .++.. .+|..+++|++++++...
T Consensus        85 ~~~~~~~~~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04670          85 LKPLSFDINFDTSEIAAAKWMPLEEYISQ  113 (127)
T ss_pred             EccCcCcCCCChhhhheeEEEcHHHHhcc
Confidence            432  22333 367888999999999753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.7e-17  Score=129.38  Aligned_cols=104  Identities=31%  Similarity=0.433  Sum_probs=77.9

Q ss_pred             cEEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-------eCCC-
Q 023914          141 KMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-------IPRI-  211 (275)
Q Consensus       141 ~~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-------~~~~-  211 (275)
                      .++|.+++ ++++++||++|..   .|.|.+|||+++.||++++||.||++||||+++...++++.+.       ++.. 
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~---~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   78 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSD---NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD   78 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecC---CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC
Confidence            34555555 5558999999874   4899999999999999999999999999999987766643321       2221 


Q ss_pred             --CEEEEEEEEEEcCCCC-CCCCCceeEEEecCCCCCCC
Q 023914          212 --GQIYIIFLAKLKRPHF-SPGPESSECRLFALDEIPFD  247 (275)
Q Consensus       212 --~~~~~~f~a~~~~~e~-~~~~E~~d~~W~~~deL~~~  247 (275)
                        +...+.|.+...++.. ...+|..+++|++++++...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          79 VRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             cEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccc
Confidence              3344667777666544 34578889999999999954

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=4.1e-17  Score=135.53  Aligned_cols=101  Identities=31%  Similarity=0.487  Sum_probs=76.4

Q ss_pred             EEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE------EeC---------
Q 023914          145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL------DIP---------  209 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~------~~~---------  209 (275)
                      +++++.++++||++|...+  +.|++|+|++|+||++.+||.||++||||+++...++++..      ..+         
T Consensus         8 ~ii~~~~~~vLL~~r~~~~--~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~~~~   85 (147)
T cd03671           8 VVLFNEDGKVFVGRRIDTP--GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWG   85 (147)
T ss_pred             EEEEeCCCEEEEEEEcCCC--CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhccccC
Confidence            3444667899999998765  89999999999999999999999999999998777776643      111         


Q ss_pred             --CCCEEEEEEEEEEcC--CCC--CC--CCCceeEEEecCCCCCCC
Q 023914          210 --RIGQIYIIFLAKLKR--PHF--SP--GPESSECRLFALDEIPFD  247 (275)
Q Consensus       210 --~~~~~~~~f~a~~~~--~e~--~~--~~E~~d~~W~~~deL~~~  247 (275)
                        ..+...+.|.+.+..  .++  ..  ++|..+++|+++++++..
T Consensus        86 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~  131 (147)
T cd03671          86 GRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL  131 (147)
T ss_pred             CcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence              113344556666654  333  22  368999999999999953

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=9.2e-17  Score=129.69  Aligned_cols=105  Identities=28%  Similarity=0.414  Sum_probs=78.5

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccc--ceeeEEEEeCCCCEEEE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV--QSPFAQLDIPRIGQIYI  216 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~--~~~~~~~~~~~~~~~~~  216 (275)
                      ||.+++++++..++++||++|...+..|.|.+|||++|+||++++||+||++||+|+++..  +..+..+..+....+++
T Consensus         2 ~p~~~av~vl~~~~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~~~~~~~~~~~~   81 (118)
T cd04674           2 NPLPVVVALLPVDDGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDVRSAPDGTLLVF   81 (118)
T ss_pred             CCcEEEEEEEEECCCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEEecCCCeEEEE
Confidence            6777777777666678888888776679999999999999999999999999999998863  45556666676667777


Q ss_pred             EEEEEEcCCCC-C--CCCCceeEEEecCCCCC
Q 023914          217 IFLAKLKRPHF-S--PGPESSECRLFALDEIP  245 (275)
Q Consensus       217 ~f~a~~~~~e~-~--~~~E~~d~~W~~~deL~  245 (275)
                      +|.+....+.. .  .+.|..+  |+.....+
T Consensus        82 ~~~~~~~~~~~~~~~~~~E~~~--~~~~~~~~  111 (118)
T cd04674          82 GLLPERRAADLPPFEPTDETTE--RAVVTAPS  111 (118)
T ss_pred             EEEeccccccCCCCCCCcceee--EEEccCCc
Confidence            78777665553 2  2355555  44444444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.73  E-value=2.4e-17  Score=137.39  Aligned_cols=125  Identities=19%  Similarity=0.229  Sum_probs=80.5

Q ss_pred             EEEEEEEee--CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-eCCCCEEEEEE
Q 023914          142 MVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-IPRIGQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~--~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~~~~~~~~~f  218 (275)
                      +++++++.+  +++|||+||..   .+.|++|||++|+|||+++||+||++||||+++........+. ....+..+..|
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~---~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f   78 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK---SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLY   78 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecC---CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEE
Confidence            344444443  36999999863   3589999999999999999999999999999986532211221 11223344455


Q ss_pred             EEEEcCCC----CCCCCCceeEEEecCCCCCCCCCCC---------cHHHHHHHHHHHHHhhcc
Q 023914          219 LAKLKRPH----FSPGPESSECRLFALDEIPFDSLAF---------SSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       219 ~a~~~~~e----~~~~~E~~d~~W~~~deL~~~~l~~---------~s~~~al~li~~~l~~~~  269 (275)
                      .+....+.    ....+|+.+++|+++++++......         --....+.-|.+|+.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (145)
T cd03672          79 IVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINRQK  142 (145)
T ss_pred             EEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHHhh
Confidence            55433221    2234789999999999988532111         112333445558988765

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.4e-17  Score=132.09  Aligned_cols=104  Identities=28%  Similarity=0.441  Sum_probs=77.9

Q ss_pred             EEEEEEEeeC-CeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE-EEeCCC---CEE
Q 023914          142 MVVGCLIEHD-KKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ-LDIPRI---GQI  214 (275)
Q Consensus       142 ~~V~viI~~~-~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~-~~~~~~---~~~  214 (275)
                      ++|.++|.++ +++||++|...+  .+|+|++|||++++||++++||.||++||||+++....++.. ......   ...
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            3455555444 899999998765  378999999999999999999999999999999877776432 222222   344


Q ss_pred             EEEEEEEEcCCCCCCCCCceeEEEecCCCCC
Q 023914          215 YIIFLAKLKRPHFSPGPESSECRLFALDEIP  245 (275)
Q Consensus       215 ~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~  245 (275)
                      ++.|.+....+....++|..+++|++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~  112 (129)
T cd04699          82 YLVFVCEALSGAVKLSDEHEEYAWVTLEELA  112 (129)
T ss_pred             EEEEEeeecCCcccCChhheEEEEecHHHhh
Confidence            5667766554433445788899999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=4.1e-17  Score=129.07  Aligned_cols=96  Identities=24%  Similarity=0.336  Sum_probs=77.7

Q ss_pred             EEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcC
Q 023914          145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKR  224 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~  224 (275)
                      ++|+.+++++||++|.    .|.|++|||++++||++++||.||++||||+++..+..++.+..  .....++|.+.+..
T Consensus         4 ~~i~~~~~~vLlv~r~----~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~~f~~~~~~   77 (112)
T cd04667           4 TVICRRGGRVLLVRKS----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG--GSTRHHVFVASVPP   77 (112)
T ss_pred             EEEEecCCEEEEEEcC----CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC--CCEEEEEEEEEcCC
Confidence            3445667899999986    38899999999999999999999999999999887777766543  34556678887765


Q ss_pred             CC-CCCCCCceeEEEecCCCCCC
Q 023914          225 PH-FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       225 ~e-~~~~~E~~d~~W~~~deL~~  246 (275)
                      +. ..+.+|..+++|++++++..
T Consensus        78 ~~~~~~~~e~~~~~W~~~~el~~  100 (112)
T cd04667          78 SAQPKPSNEIADCRWLSLDALGD  100 (112)
T ss_pred             cCCCCCchheeEEEEecHHHhhh
Confidence            53 33557888999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.7e-17  Score=132.99  Aligned_cols=116  Identities=22%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             EEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee---E-EEEeCCC-CEEEEEEEEE
Q 023914          147 LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF---A-QLDIPRI-GQIYIIFLAK  221 (275)
Q Consensus       147 iI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~---~-~~~~~~~-~~~~~~f~a~  221 (275)
                      .+..++++||++|... .+|.|.+|||++|+|||+++||.||++||||+++..+...   . .+..+.. ......|.+.
T Consensus         9 ~~~~~~~vLl~~r~~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   87 (131)
T cd04695           9 SLDKETKVLLLKRVKT-LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGF   87 (131)
T ss_pred             EcCCCCEEEEEEecCC-CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEE
Confidence            3356789999999865 4799999999999999999999999999999998655321   1 1222221 1234467777


Q ss_pred             EcCCC-CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHH
Q 023914          222 LKRPH-FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFY  264 (275)
Q Consensus       222 ~~~~e-~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~  264 (275)
                      ...+. ...++|..+++|++++++... ...+..+.++..+..|
T Consensus        88 ~~~~~~~~~~~E~~~~~W~~~~e~~~~-~~~~~~~~~~~~~~~~  130 (131)
T cd04695          88 VPPHQEVVLNHEHTEYRWCSFAEALEL-APFPGQRALYDHVWRY  130 (131)
T ss_pred             ecCCCccccCchhcccEecCHHHHHHh-cCChhHHHHHHHHHhh
Confidence            65443 445578999999999999853 4567777777766665

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.70  E-value=2.5e-16  Score=124.36  Aligned_cols=107  Identities=27%  Similarity=0.368  Sum_probs=83.1

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f  218 (275)
                      +++++++++++++||++|...+ .+|+|++|+|+++.||+++++|.||++||+|+++...++++...+.++  +..+.+|
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVF   82 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEE
Confidence            3444444556999999998665 589999999999999999999999999999999887777776665443  4566777


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      .+....+... ..|..++.|++++++....+
T Consensus        83 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~  112 (124)
T cd03425          83 LVELWSGEPQ-LLEHQELRWVPPEELDDLDF  112 (124)
T ss_pred             EEeeeCCCcc-cccCceEEEeeHHHcccCCC
Confidence            7776554332 35678899999999985433

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=7.2e-17  Score=130.17  Aligned_cols=102  Identities=26%  Similarity=0.357  Sum_probs=79.0

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE----EEEeC--CCCEEEEEEEEEEcC-C
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA----QLDIP--RIGQIYIIFLAKLKR-P  225 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~----~~~~~--~~~~~~~~f~a~~~~-~  225 (275)
                      ++||++|+.    +.|.+|||++++|||+++||.||++||||+++....+++    .+.+.  ..+...++|.+.+.. .
T Consensus        18 ~vLl~~~~~----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~   93 (130)
T cd03428          18 EYLLLQASY----GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPDV   93 (130)
T ss_pred             eEEEEEccC----CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceEEEEEEEEeCCCC
Confidence            699999883    889999999999999999999999999999988776642    22222  234666778888873 3


Q ss_pred             CCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          226 HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      .+..++|..+++|++++++.. .+.++..+.+++
T Consensus        94 ~~~~~~E~~~~~W~~~~e~~~-~~~~~~~~~~~~  126 (130)
T cd03428          94 EVKLSEEHQDYRWLPYEEALK-LLTYEDLKAVLD  126 (130)
T ss_pred             ccccccceeeEEeecHHHHHH-HcCchhHHHHHH
Confidence            445557899999999999985 345677666555

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=6.5e-17  Score=130.51  Aligned_cols=103  Identities=25%  Similarity=0.354  Sum_probs=74.8

Q ss_pred             EEEEEEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCcccc--ceeeEEEEeCC-CCEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEV--QSPFAQLDIPR-IGQIYI  216 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~--~~~~~~~~~~~-~~~~~~  216 (275)
                      +.+++++.+++|||++|+...  .+|.|++| ||++++||++ +||+||++||||+++..  ...+..+.... ....++
T Consensus         3 v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   81 (127)
T cd04693           3 VHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDYY   81 (127)
T ss_pred             EEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEEEE
Confidence            344556778899999988543  46899998 8999999999 99999999999999764  33445544433 333444


Q ss_pred             EEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          217 IFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       217 ~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      .|.+....+...++ +|..+++|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04693          82 LFYADVEIGKLILQKEEVDEVKFVSKDEIDG  112 (127)
T ss_pred             EEEecCcccccccCHHHhhhEEEeCHHHHHH
Confidence            45554444444444 7889999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=9.9e-17  Score=129.76  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=79.4

Q ss_pred             EEEEEeeCCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIF  218 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f  218 (275)
                      .+++++.+++|||++|...+  .+|+|++ |||++++||++++||+||++||||+++..+..++.+.+...  ....++|
T Consensus         4 ~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~~f   83 (126)
T cd04697           4 YIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVF   83 (126)
T ss_pred             EEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEEEE
Confidence            34556778999999987543  3799999 59999999999999999999999999987777777665443  3444567


Q ss_pred             EEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          219 LAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       219 ~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      .+... +++..+ +|..+++|++++++..
T Consensus        84 ~~~~~-~~~~~~~~E~~~~~w~~~~el~~  111 (126)
T cd04697          84 SCVYD-GPLKLQEEEVEEITWLSINEILQ  111 (126)
T ss_pred             EEEEC-CCCCCCHhHhhheEEcCHHHHHH
Confidence            77764 344443 7888999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.69  E-value=9.9e-17  Score=134.99  Aligned_cols=105  Identities=22%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             EEEEEEe-eC--CeEEEEEeccCC--CCCceeeeeEEeeCC-CCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEE
Q 023914          143 VVGCLIE-HD--KKILLCKRKIEP--SYGLWTLPAGYMEIG-ESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQI  214 (275)
Q Consensus       143 ~V~viI~-~~--~~iLL~rr~~~p--~~g~w~lPgG~vE~G-Es~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~  214 (275)
                      +|.+++. .+  ++|||+||....  .+|.|++|||++|+| |++++||+||++||||+++....+++....  ...+..
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4444443 33  699999998753  479999999999999 999999999999999999988888776542  222344


Q ss_pred             EEEEEEEEcCC-CCCCC-CCceeEEEecCCCCCCC
Q 023914          215 YIIFLAKLKRP-HFSPG-PESSECRLFALDEIPFD  247 (275)
Q Consensus       215 ~~~f~a~~~~~-e~~~~-~E~~d~~W~~~deL~~~  247 (275)
                      +..|.+..... ++.++ +|..+++|++++++...
T Consensus        84 v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          84 VTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             EEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence            55677766553 34444 68899999999999864

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>TIGR00586 mutt mutator mutT protein

Probab=99.69  E-value=5.6e-16  Score=124.33  Aligned_cols=109  Identities=16%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f  218 (275)
                      .++++++++++++||.+|...+ ..|+|++|||.++.||++++|+.||+.||+|+++....+++.....+.  ...+.+|
T Consensus         6 ~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~   85 (128)
T TIGR00586         6 IAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWL   85 (128)
T ss_pred             EEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEE
Confidence            3444445666799999997654 479999999999999999999999999999999877666665544333  3455667


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcH
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS  253 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s  253 (275)
                      .+...++... ..+..+++|++.++++.  +++|.
T Consensus        86 ~~~~~~~~~~-~~~~~~~~W~~~~~l~~--~~~p~  117 (128)
T TIGR00586        86 LERWEGGPPG-KEGQPEEWWVLVGLLAD--DFFPA  117 (128)
T ss_pred             EEEEcCCCcC-cccccccEEeCHHHCCc--cCCCC
Confidence            6766544322 34566789999999995  44544

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=1.7e-16  Score=129.75  Aligned_cols=95  Identities=23%  Similarity=0.382  Sum_probs=74.7

Q ss_pred             eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee-----EEEEe--CC-------CCEEE
Q 023914          150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF-----AQLDI--PR-------IGQIY  215 (275)
Q Consensus       150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~-----~~~~~--~~-------~~~~~  215 (275)
                      +++++||+++... ..|.|+||+|++|+|||+++||.||++||||+++.. ..+     +.+.+  +.       .+...
T Consensus        11 ~~~~~Llvk~~~~-~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (132)
T cd04661          11 DDTLVLLVQQKVG-SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAKV   88 (132)
T ss_pred             cCcEEEEEEeecC-CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccEE
Confidence            4678999998754 368999999999999999999999999999998754 222     22222  21       12456


Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          216 IIFLAKLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       216 ~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                      ++|.+...++++...+|+.+++|++++|++.
T Consensus        89 ~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~  119 (132)
T cd04661          89 FFFKARYMSGQFELSQNQVDFKWLAKEELQK  119 (132)
T ss_pred             EEEEEEEecCccccCCCcceeEecCHHHHHh
Confidence            7889998888777678899999999999984

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.68  E-value=7.8e-16  Score=132.99  Aligned_cols=130  Identities=21%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIY  215 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~  215 (275)
                      ++..++++.+.+++++||+|+.+.+ ..+.|++|||.+|+||++++||+||++||||+++..+.+++.+...  .....+
T Consensus        46 ~~~~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~  125 (185)
T PRK11762         46 GRGAVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKM  125 (185)
T ss_pred             CCCEEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEE
Confidence            3334444445677899999997665 3677999999999999999999999999999999999988876532  224566


Q ss_pred             EEEEEEEcCCC-CC-CCCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhc
Q 023914          216 IIFLAKLKRPH-FS-PGPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       216 ~~f~a~~~~~e-~~-~~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~  268 (275)
                      +.|.+....+. .. .+.|..++.|++.+++..    ..+.....-.++.+...|++++
T Consensus       126 ~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al~~~~~~l~~~  184 (185)
T PRK11762        126 NIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPDFSEARSVAALFLAREWLKQQ  184 (185)
T ss_pred             EEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhcc
Confidence            67777754332 12 225666889999998753    3344333444555666676653

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.68  E-value=3.7e-16  Score=131.58  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=76.6

Q ss_pred             EEEE-EEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE----eCC------
Q 023914          142 MVVG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD----IPR------  210 (275)
Q Consensus       142 ~~V~-viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~----~~~------  210 (275)
                      ++|. ++++.+++|||+||...  ++.|++|||++++||++++||.||++||||+++...++++...    +.+      
T Consensus         9 ~~v~~~i~~~~g~vLL~~r~~~--~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~   86 (156)
T PRK00714          9 PNVGIILLNRQGQVFWGRRIGQ--GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVR   86 (156)
T ss_pred             CeEEEEEEecCCEEEEEEEcCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhh
Confidence            3443 44566889999999853  4889999999999999999999999999999988777766531    111      


Q ss_pred             ------CCEEEEEEEEEEcCC--CCCC----CCCceeEEEecCCCCCC
Q 023914          211 ------IGQIYIIFLAKLKRP--HFSP----GPESSECRLFALDEIPF  246 (275)
Q Consensus       211 ------~~~~~~~f~a~~~~~--e~~~----~~E~~d~~W~~~deL~~  246 (275)
                            .+...++|.+....+  ++..    ++|..+++|++++|++.
T Consensus        87 ~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~  134 (156)
T PRK00714         87 RSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLD  134 (156)
T ss_pred             ccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHH
Confidence                  122456777776432  2222    26889999999999984

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.66  E-value=4.7e-16  Score=133.99  Aligned_cols=121  Identities=19%  Similarity=0.137  Sum_probs=83.1

Q ss_pred             EEEEEeeCCeEEEEEeccCC--CCCce-eeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEP--SYGLW-TLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIF  218 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p--~~g~w-~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f  218 (275)
                      .+++++.+++|||++|...+  .+|.| .+|||++++|||+++||+||++||||+.+....+++.+.+....  ...++|
T Consensus        41 ~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~f  120 (180)
T PRK15393         41 YIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALF  120 (180)
T ss_pred             EEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEEEE
Confidence            33445667899999987543  25666 57899999999999999999999999997776666655443332  233456


Q ss_pred             EEEEcCCCCCCC-CCceeEEEecCCCCCCC--CCCCcHHHHHHHHHHHHHhhcc
Q 023914          219 LAKLKRPHFSPG-PESSECRLFALDEIPFD--SLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       219 ~a~~~~~e~~~~-~E~~d~~W~~~deL~~~--~l~~~s~~~al~li~~~l~~~~  269 (275)
                      .+.. .+....+ +|..+++|+++++++..  .+.+.. .   ..+..|+.+..
T Consensus       121 ~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~-~---~~l~~~l~~~~  169 (180)
T PRK15393        121 SCVS-HGPFALQEEEVSEVCWMTPEEITARCDEFTPDS-L---KALALWLTRNA  169 (180)
T ss_pred             EEEe-CCCCCCChHHeeEEEECCHHHHhhhhhhcCccH-H---HHHHHHHHhhc
Confidence            6654 3444433 78899999999999854  233322 2   33446766543

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=6.3e-16  Score=125.11  Aligned_cols=91  Identities=25%  Similarity=0.408  Sum_probs=71.6

Q ss_pred             CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc-eeeEEEEeCCC------CEEEEEEEEEEcC
Q 023914          152 KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDIPRI------GQIYIIFLAKLKR  224 (275)
Q Consensus       152 ~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~-~~~~~~~~~~~------~~~~~~f~a~~~~  224 (275)
                      +++||++|..   .+.|.+|||++|.|||+++||+||++||||+++... ++++.+.+..+      +...++|.+....
T Consensus        15 ~~vLLv~~~~---~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~   91 (122)
T cd04666          15 VEVLLVTSRR---TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTE   91 (122)
T ss_pred             eEEEEEEecC---CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEEEec
Confidence            6899999873   488999999999999999999999999999998777 88887765432      3445667777654


Q ss_pred             CCCC-CCCCceeEEEecCCCCC
Q 023914          225 PHFS-PGPESSECRLFALDEIP  245 (275)
Q Consensus       225 ~e~~-~~~E~~d~~W~~~deL~  245 (275)
                      .... ++.+..+++|++++++.
T Consensus        92 ~~~~~~~~e~~~~~W~~~~ea~  113 (122)
T cd04666          92 ELDEWPEMHQRKRKWFSPEEAA  113 (122)
T ss_pred             cccCCcccCceEEEEecHHHHH
Confidence            4322 34567789999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=7.1e-16  Score=125.76  Aligned_cols=101  Identities=28%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc-ccceeeEEEE----eCCC-----C
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV-EVQSPFAQLD----IPRI-----G  212 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v-~~~~~~~~~~----~~~~-----~  212 (275)
                      +|.+||.++++|||+++..   .+.|.+|||++|+||++++||+||++||||+++ .....++.+.    +..+     +
T Consensus         2 ~~~~ii~~~~~vLLv~~~~---~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (131)
T cd04686           2 AVRAIILQGDKILLLYTKR---YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFH   78 (131)
T ss_pred             cEEEEEEECCEEEEEEEcC---CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeE
Confidence            3566777789999999874   368999999999999999999999999999987 4555555442    1111     2


Q ss_pred             EEEEEEEEEEcCCC--CCCC-CCc---eeEEEecCCCCCC
Q 023914          213 QIYIIFLAKLKRPH--FSPG-PES---SECRLFALDEIPF  246 (275)
Q Consensus       213 ~~~~~f~a~~~~~e--~~~~-~E~---~d~~W~~~deL~~  246 (275)
                      ...++|.+.+....  ...+ .|.   .+++|++++++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~  118 (131)
T cd04686          79 MISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIE  118 (131)
T ss_pred             EEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHH
Confidence            34567888876543  2222 222   3589999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=3.4e-15  Score=120.48  Aligned_cols=98  Identities=24%  Similarity=0.311  Sum_probs=80.8

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIFLAK  221 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f~a~  221 (275)
                      |.+++.+++++||+++.    .+.|++|||++|+||++++||+||++||+|+++....+++.+..+..  .....+|.+.
T Consensus         3 v~vi~~~~~~vLl~~~~----~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~   78 (118)
T cd04665           3 VLVICFYDDGLLLVRHK----DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAV   78 (118)
T ss_pred             EEEEEEECCEEEEEEeC----CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEE
Confidence            45566678999999986    46799999999999999999999999999999999999888776543  4566778888


Q ss_pred             EcCCC-CCCCCCceeEEEecCCCCC
Q 023914          222 LKRPH-FSPGPESSECRLFALDEIP  245 (275)
Q Consensus       222 ~~~~e-~~~~~E~~d~~W~~~deL~  245 (275)
                      ..... ..++.|+....|++.+...
T Consensus        79 ~~~~~~~~~~~E~~~~~~~~~~~~~  103 (118)
T cd04665          79 SAQLEEKASYLETDGPVLFKNEPEE  103 (118)
T ss_pred             EEecccccccccccCcEEeccCCcc
Confidence            77665 4467899999999977653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.64  E-value=6.8e-16  Score=130.81  Aligned_cols=105  Identities=22%  Similarity=0.288  Sum_probs=77.2

Q ss_pred             EEEEE-EEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccceee-EEEEe--CC----
Q 023914          142 MVVGC-LIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQSPF-AQLDI--PR----  210 (275)
Q Consensus       142 ~~V~v-iI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~-~~~~~--~~----  210 (275)
                      .+|.+ +++.+++|||++|+...  .+|.|++| ||++|+|||+++||+||++||||+.+....++ +...+  +.    
T Consensus        31 ~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  110 (165)
T cd02885          31 RAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGL  110 (165)
T ss_pred             eEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCc
Confidence            34444 45667899999998643  47999997 89999999999999999999999998776664 43322  11    


Q ss_pred             -CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          211 -IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       211 -~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                       .+...++|.+....+.....+|..+++|++++++..
T Consensus       111 ~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~  147 (165)
T cd02885         111 VEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKE  147 (165)
T ss_pred             eeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHH
Confidence             123446677776544333347889999999999874

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.64  E-value=7.4e-16  Score=123.50  Aligned_cols=106  Identities=38%  Similarity=0.523  Sum_probs=80.4

Q ss_pred             cEEEEEEEee-CCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCC---C
Q 023914          141 KMVVGCLIEH-DKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRI---G  212 (275)
Q Consensus       141 ~~~V~viI~~-~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~---~  212 (275)
                      ..+|.+++.+ ++++||++|...+  .++.|.+|||++++|||+++||+||+.||||+++..........+  +..   +
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            3456655544 4599999999875  478999999999999999999999999999999866666554443  222   2


Q ss_pred             EEEEEEEEEEcCCC--CCCC-CCceeEEEecCCCCCC
Q 023914          213 QIYIIFLAKLKRPH--FSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       213 ~~~~~f~a~~~~~e--~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ...++|.+....+.  ...+ +|..++.|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  118 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLE  118 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHH
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhh
Confidence            56666777765543  2233 5999999999999874

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.2e-15  Score=126.26  Aligned_cols=101  Identities=32%  Similarity=0.422  Sum_probs=74.3

Q ss_pred             EEEEeeC---CeEEEEEeccC--CCCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccc--cceeeEEEEeCC------
Q 023914          145 GCLIEHD---KKILLCKRKIE--PSYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLDIPR------  210 (275)
Q Consensus       145 ~viI~~~---~~iLL~rr~~~--p~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~--~~~~~~~~~~~~------  210 (275)
                      +.+++.+   +++|+++|+..  ..+|.|++ |||++++|||+++||+||++||||+++.  .+.+++.+....      
T Consensus         7 ~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~   86 (144)
T cd04692           7 CWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKL   86 (144)
T ss_pred             EEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCC
Confidence            3444555   89999999864  24799999 5999999999999999999999999864  445555543321      


Q ss_pred             -CCEEEEEEEEEEcC--CCCCCC-CCceeEEEecCCCCC
Q 023914          211 -IGQIYIIFLAKLKR--PHFSPG-PESSECRLFALDEIP  245 (275)
Q Consensus       211 -~~~~~~~f~a~~~~--~e~~~~-~E~~d~~W~~~deL~  245 (275)
                       .....++|.+....  +.+.++ +|..+++|++++++.
T Consensus        87 ~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  125 (144)
T cd04692          87 IDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFA  125 (144)
T ss_pred             ccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHH
Confidence             12355677777654  334444 788999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=6.1e-15  Score=115.24  Aligned_cols=102  Identities=38%  Similarity=0.583  Sum_probs=79.4

Q ss_pred             EEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC----CCEEEEEE
Q 023914          144 VGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR----IGQIYIIF  218 (275)
Q Consensus       144 V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~----~~~~~~~f  218 (275)
                      +.+++ +.++++||++|... ..|+|.+|+|+++.||++.++|.||+.||+|+.+........+....    ....+++|
T Consensus         3 ~~~i~~~~~~~ill~kr~~~-~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (123)
T cd02883           3 VGAVILDEDGRVLLVRRADS-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVF   81 (123)
T ss_pred             eEEEEECCCCCEEEEEEcCC-CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEE
Confidence            44555 44489999999865 47999999999999999999999999999999986555555444322    35667788


Q ss_pred             EEEEcCCCC--CCCCCceeEEEecCCCCCC
Q 023914          219 LAKLKRPHF--SPGPESSECRLFALDEIPF  246 (275)
Q Consensus       219 ~a~~~~~e~--~~~~E~~d~~W~~~deL~~  246 (275)
                      .+....++.  ...+|..+.+|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          82 LARLVGGEPTLLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             EEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence            888776654  3347778899999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=8.1e-15  Score=121.99  Aligned_cols=103  Identities=24%  Similarity=0.346  Sum_probs=72.3

Q ss_pred             EEEEE-EeeCCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc----eeeEEEE--eCC---
Q 023914          143 VVGCL-IEHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ----SPFAQLD--IPR---  210 (275)
Q Consensus       143 ~V~vi-I~~~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~----~~~~~~~--~~~---  210 (275)
                      +|.++ ++.++++||+||...+  .+|.|++|||++++||++++||+||++||+|+.+...    ++++...  ++.   
T Consensus         3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~   82 (143)
T cd04694           3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLS   82 (143)
T ss_pred             EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccC
Confidence            44444 5678899999998653  4799999999999999999999999999999988654    4555432  221   


Q ss_pred             -----CCEEEEEEEEEEcCC------CCCCC-CCceeEEEecCCCCC
Q 023914          211 -----IGQIYIIFLAKLKRP------HFSPG-PESSECRLFALDEIP  245 (275)
Q Consensus       211 -----~~~~~~~f~a~~~~~------e~~~~-~E~~d~~W~~~deL~  245 (275)
                           .+...++|.+....+      ++.++ +|+.+++|++++++.
T Consensus        83 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~  129 (143)
T cd04694          83 RGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAK  129 (143)
T ss_pred             CCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHH
Confidence                 122333333333221      22343 799999999998865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1e-14  Score=119.85  Aligned_cols=103  Identities=26%  Similarity=0.312  Sum_probs=74.9

Q ss_pred             EEEEeeCCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc-ccceeeEEE----EeC--CCCEEE
Q 023914          145 GCLIEHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADV-EVQSPFAQL----DIP--RIGQIY  215 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v-~~~~~~~~~----~~~--~~~~~~  215 (275)
                      +++++.+++|||+++....  ..+.|.+|||+++.||++++|+.||++||||+++ .....+...    .+.  ..+...
T Consensus         5 ~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~   84 (133)
T cd04685           5 VVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEE   84 (133)
T ss_pred             EEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccceeeE
Confidence            4556678999999987542  4689999999999999999999999999999998 545444322    222  223455


Q ss_pred             EEEEEEEcCCCCCC----C---CCceeEEEecCCCCCCC
Q 023914          216 IIFLAKLKRPHFSP----G---PESSECRLFALDEIPFD  247 (275)
Q Consensus       216 ~~f~a~~~~~e~~~----~---~E~~d~~W~~~deL~~~  247 (275)
                      ++|.++...+++..    .   .+..+++|+++++|...
T Consensus        85 ~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          85 RFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            77888876543221    1   23457899999999865

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.57  E-value=7.7e-15  Score=126.69  Aligned_cols=105  Identities=19%  Similarity=0.389  Sum_probs=75.7

Q ss_pred             cEEEEEE-EeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccce-eeEEEEe----CCC
Q 023914          141 KMVVGCL-IEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQS-PFAQLDI----PRI  211 (275)
Q Consensus       141 ~~~V~vi-I~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~~-~~~~~~~----~~~  211 (275)
                      ..+|.++ ++.+++|||+||+...  .+|.|.+| ||++++|||+++||+||++||||+++.... +++.+.+    +..
T Consensus        34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  113 (184)
T PRK03759         34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNG  113 (184)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCC
Confidence            3444444 4557899999986432  36889887 899999999999999999999999986443 2333321    111


Q ss_pred             ---CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          212 ---GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       212 ---~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                         +..+++|.+... +++.++ +|..+++|++++++..
T Consensus       114 ~~~~~~~~vf~~~~~-~~~~~~~~Ev~~~~W~~~~el~~  151 (184)
T PRK03759        114 IVENEVCPVFAARVT-SALQPNPDEVMDYQWVDPADLLR  151 (184)
T ss_pred             ceeeEEEEEEEEEEC-CCCCCChhHeeeEEEECHHHHHH
Confidence               235567888776 345554 7889999999999864

>PRK08999 hypothetical protein; Provisional

Probab=99.56  E-value=3.1e-14  Score=131.94  Aligned_cols=107  Identities=23%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             EEEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f  218 (275)
                      .+++++++.++++||.||... ...|+|++|||++|.||++++|+.||++||+|+++.....+....+.++  ...+.+|
T Consensus         7 ~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y   86 (312)
T PRK08999          7 VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR   86 (312)
T ss_pred             EEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence            344444456689999998754 3579999999999999999999999999999999877766666554443  3455667


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      .+....+.. ...|..+++|+++++++...+
T Consensus        87 ~~~~~~~~~-~~~e~~~~~Wv~~~el~~~~~  116 (312)
T PRK08999         87 RVTAWQGEP-HGREGQPLAWVAPDELAVYPF  116 (312)
T ss_pred             EEEEecCcc-cCccCCccEEecHHHcccCCC
Confidence            666544432 235667889999999995433

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.55  E-value=5.3e-14  Score=123.57  Aligned_cols=109  Identities=18%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             ccCCcEEEEEEEee-CCeEEEEEeccCCC------CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-
Q 023914          137 YQNPKMVVGCLIEH-DKKILLCKRKIEPS------YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-  208 (275)
Q Consensus       137 y~~p~~~V~viI~~-~~~iLL~rr~~~p~------~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-  208 (275)
                      +.++..++++.++. +++|||+++.+.+-      +-.|++|+|.+|+||++++||+||+.||||+.+..+.++..+.. 
T Consensus        46 v~~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~s  125 (202)
T PRK10729         46 FERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLAS  125 (202)
T ss_pred             EEcCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcC
Confidence            45566666555554 57999999988763      14699999999999999999999999999999988887765532 


Q ss_pred             C-CCCEEEEEEEEEEcCC---C--CCC-CCCceeEEEecCCCCC
Q 023914          209 P-RIGQIYIIFLAKLKRP---H--FSP-GPESSECRLFALDEIP  245 (275)
Q Consensus       209 ~-~~~~~~~~f~a~~~~~---e--~~~-~~E~~d~~W~~~deL~  245 (275)
                      | ..+..++.|+++....   .  ... .+|..++.|++.+++.
T Consensus       126 pg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~  169 (202)
T PRK10729        126 PGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAY  169 (202)
T ss_pred             CCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHH
Confidence            2 3456778888885221   1  122 2566679999999975

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.52  E-value=2.2e-14  Score=120.95  Aligned_cols=100  Identities=23%  Similarity=0.306  Sum_probs=72.8

Q ss_pred             EEEEEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccce--eeEEEE----eCCC-CE
Q 023914          144 VGCLIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQS--PFAQLD----IPRI-GQ  213 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~~--~~~~~~----~~~~-~~  213 (275)
                      .+++++.+++|||+||+...  .+|.|++| ||+++.||  .+||+||++||||+++...+  .+....    .+.. ..
T Consensus        31 ~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g~~~  108 (158)
T TIGR02150        31 SVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWGEHE  108 (158)
T ss_pred             EEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCCcEE
Confidence            34445667899999998642  47999998 89999999  49999999999999987654  233222    1212 34


Q ss_pred             EEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          214 IYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ...+|.+.... ++.++ +|+.+++|++++|++.
T Consensus       109 ~~~~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~  141 (158)
T TIGR02150       109 LCPVFFARAPV-PLNPNPEEVAEYRWVSLEELKE  141 (158)
T ss_pred             EEEEEEEecCC-cccCChhHeeeEEEeCHHHHHH
Confidence            55677777654 45555 6999999999999874

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.51  E-value=6.1e-14  Score=121.56  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             ccCCcEEEEEEEe-eCCeEEEEEeccCC------CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC
Q 023914          137 YQNPKMVVGCLIE-HDKKILLCKRKIEP------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP  209 (275)
Q Consensus       137 y~~p~~~V~viI~-~~~~iLL~rr~~~p------~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~  209 (275)
                      +.++..+++++++ +++++||+++.+.+      .+..|++|||++|+||++++||+||++||||+.+..+..++.+...
T Consensus        41 v~~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~  120 (185)
T TIGR00052        41 YDRGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSS  120 (185)
T ss_pred             EEcCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcC
Confidence            3455555555454 45799999987654      2467999999999999999999999999999999888887765432


Q ss_pred             --CCCEEEEEEEEEEcCCC---C--CCCCCceeEEEecCCCCC
Q 023914          210 --RIGQIYIIFLAKLKRPH---F--SPGPESSECRLFALDEIP  245 (275)
Q Consensus       210 --~~~~~~~~f~a~~~~~e---~--~~~~E~~d~~W~~~deL~  245 (275)
                        ..+..++.|+++...+.   .  ..++|..+..|++++++.
T Consensus       121 ~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~  163 (185)
T TIGR00052       121 PGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQAL  163 (185)
T ss_pred             CCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHH
Confidence              23467788999875432   1  123555678999999875

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.49  E-value=2.2e-13  Score=118.63  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=75.8

Q ss_pred             EEEEE-EEee-CCeEEEEEeccCC--CCCceeeeeEEeeCC-CCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEE
Q 023914          142 MVVGC-LIEH-DKKILLCKRKIEP--SYGLWTLPAGYMEIG-ESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQI  214 (275)
Q Consensus       142 ~~V~v-iI~~-~~~iLL~rr~~~p--~~g~w~lPgG~vE~G-Es~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~  214 (275)
                      .+|++ ++.+ ++++||.+|+...  ..|.|+||||++|+| |++++||+||++||||+.+..+.+++....  +..+..
T Consensus        32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~  111 (190)
T PRK10707         32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQ  111 (190)
T ss_pred             eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcE
Confidence            44433 4333 4589999977543  368999999999975 689999999999999999999998887652  333444


Q ss_pred             EEEEEEEEcCC-CCCCC-CCceeEEEecCCCCCC
Q 023914          215 YIIFLAKLKRP-HFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       215 ~~~f~a~~~~~-e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ...|.+.+... ...++ +|..++.|++++++..
T Consensus       112 ~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~  145 (190)
T PRK10707        112 VTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALH  145 (190)
T ss_pred             EEEEEEEECCCCCCCCChhhhheEEEEeHHHHhC
Confidence            44454444332 33444 7888999999999764

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.49  E-value=2.7e-13  Score=114.49  Aligned_cols=98  Identities=26%  Similarity=0.280  Sum_probs=74.8

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIFLA  220 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~~~f~a  220 (275)
                      .|.++...++++||+++..    ..|++|||++|+||++++||.||++||||+.+..+++++.+....  .......|.|
T Consensus        26 ~V~ii~~~~~~~LL~~~~~----~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A  101 (156)
T TIGR02705        26 HVLVIPRYKDQWLLTEHKR----RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFA  101 (156)
T ss_pred             EEEEEEEECCEEEEEEEcC----CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEE
Confidence            3444445566999998763    349999999999999999999999999999999999999876533  3466788999


Q ss_pred             EEcCCCCCCCCCceeEE-EecCCCCCC
Q 023914          221 KLKRPHFSPGPESSECR-LFALDEIPF  246 (275)
Q Consensus       221 ~~~~~e~~~~~E~~d~~-W~~~deL~~  246 (275)
                      +....+  ..+|..+.. ++++++++.
T Consensus       102 ~~~~~~--~~~e~~E~~~~~~~~~~~~  126 (156)
T TIGR02705       102 EVSALE--SKDDYLETKGPVLLQEIPD  126 (156)
T ss_pred             EEeccc--cCCCceeeEeEEEHHHHHH
Confidence            987443  225545555 688888753

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.49  E-value=4.5e-13  Score=116.12  Aligned_cols=99  Identities=20%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc----------------eeeEEE----EeCCC-
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ----------------SPFAQL----DIPRI-  211 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~----------------~~~~~~----~~~~~-  211 (275)
                      ++|+++|+   ..|.|.+|||++|+||++++|++||++||||+.+..+                ..+.++    ..|.. 
T Consensus        50 ~vLl~~r~---~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~t  126 (186)
T cd03670          50 QFVAIKRP---DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNT  126 (186)
T ss_pred             EEEEEEeC---CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCC
Confidence            78888886   3689999999999999999999999999997653221                012222    12221 


Q ss_pred             ---CEEEEEEEEEEcCC------CCCCCCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          212 ---GQIYIIFLAKLKRP------HFSPGPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       212 ---~~~~~~f~a~~~~~------e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                         ....+.|......+      .+...+|..+++||++++++  ++.+++..+
T Consensus       127 d~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~--~L~~dH~~I  178 (186)
T cd03670         127 DNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKL--PLYANHSQF  178 (186)
T ss_pred             CcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccc--ccccCHHHH
Confidence               22445555544322      23345788999999999998  677777544

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.48  E-value=3.8e-13  Score=109.71  Aligned_cols=90  Identities=21%  Similarity=0.200  Sum_probs=62.0

Q ss_pred             CeEEEEEeccC----CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc-eeeEEEEeCC---------------C
Q 023914          152 KKILLCKRKIE----PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDIPR---------------I  211 (275)
Q Consensus       152 ~~iLL~rr~~~----p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~-~~~~~~~~~~---------------~  211 (275)
                      .+|||++|...    +..+.|++|||+++.||++++||+||++||||+++... ..+..+..+.               .
T Consensus        15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~~l~~~~~~~~~~v~~fl~~~~~d~~   94 (126)
T cd04662          15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFIDLGSLKQSGGKVVHAWAVEADLDIT   94 (126)
T ss_pred             EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEEeEEEEECCCCeEEEEEEEEecCChh
Confidence            36999987432    34688999999999999999999999999999987411 1122222111               1


Q ss_pred             CEEEEEEEEEEcCCCCCC--CCCceeEEEecC
Q 023914          212 GQIYIIFLAKLKRPHFSP--GPESSECRLFAL  241 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~~~--~~E~~d~~W~~~  241 (275)
                      ....++|.+....++...  .+|..+++||+.
T Consensus        95 ~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          95 DIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             HeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            233455666655544433  488889999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.45  E-value=4.6e-13  Score=114.92  Aligned_cols=107  Identities=22%  Similarity=0.253  Sum_probs=75.2

Q ss_pred             CeEEEEEeccCC--CCCcee-eeeEEeeCCCCHHHHHHHHHHHHhCCccccc---eeeEEEE--e--CC---CCEEEEEE
Q 023914          152 KKILLCKRKIEP--SYGLWT-LPAGYMEIGESAAEGAIRETWEEARADVEVQ---SPFAQLD--I--PR---IGQIYIIF  218 (275)
Q Consensus       152 ~~iLL~rr~~~p--~~g~w~-lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~---~~~~~~~--~--~~---~~~~~~~f  218 (275)
                      ++++++||+...  .+|+|+ +|||+++.||++++||+||++||||+++...   .+++...  .  ..   .+...++|
T Consensus        48 ~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f  127 (180)
T cd03676          48 LRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVY  127 (180)
T ss_pred             eEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEE
Confidence            799999998764  489995 8999999999999999999999999998653   3333221  1  11   12455667


Q ss_pred             EEEEcCCC-CCCC-CCceeEEEecCCCCCC----CCCCCcHHHHHH
Q 023914          219 LAKLKRPH-FSPG-PESSECRLFALDEIPF----DSLAFSSISVTL  258 (275)
Q Consensus       219 ~a~~~~~e-~~~~-~E~~d~~W~~~deL~~----~~l~~~s~~~al  258 (275)
                      .+.+.... +.++ +|..++.|++++|+..    .++.+.....++
T Consensus       128 ~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~~~~~~lv~~  173 (180)
T cd03676         128 DLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTL  173 (180)
T ss_pred             EEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCCCcccHhHHH
Confidence            77654332 3344 7899999999999753    345444433333

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.40  E-value=3.3e-12  Score=111.29  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=78.9

Q ss_pred             ccCCcEEEEEEEee-CCeEEEEEeccCC-------CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-
Q 023914          137 YQNPKMVVGCLIEH-DKKILLCKRKIEP-------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-  207 (275)
Q Consensus       137 y~~p~~~V~viI~~-~~~iLL~rr~~~p-------~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-  207 (275)
                      +.++..+++++++. +++++|+++.+.+       .+-.|++|||.+|+| ++++||+||+.||||+.+..+.+++.+. 
T Consensus        42 v~~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~  120 (191)
T PRK15009         42 YDRGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYM  120 (191)
T ss_pred             EEECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEc
Confidence            34455554444444 6799999999876       234599999999976 6999999999999999998888877652 


Q ss_pred             eC-CCCEEEEEEEEEEcCC-CC----CCCCCceeEEEecCCCCCC
Q 023914          208 IP-RIGQIYIIFLAKLKRP-HF----SPGPESSECRLFALDEIPF  246 (275)
Q Consensus       208 ~~-~~~~~~~~f~a~~~~~-e~----~~~~E~~d~~W~~~deL~~  246 (275)
                      .| ..+..++.|+|+.... ..    ..++|..++.|++.+++..
T Consensus       121 spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~  165 (191)
T PRK15009        121 SPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALE  165 (191)
T ss_pred             CCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHH
Confidence            22 2346777888886421 11    1236667899999999753

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.35  E-value=1.1e-11  Score=101.11  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee-eEEEEeC--CCCEEEEEEEEEEcCC--C-
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP-FAQLDIP--RIGQIYIIFLAKLKRP--H-  226 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~-~~~~~~~--~~~~~~~~f~a~~~~~--e-  226 (275)
                      ++|+.|..    .+.|.+|||.+++||++++||+||++||||+++..... .+..+..  ..+..++.+.+.....  + 
T Consensus        15 ~ll~~r~~----~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   90 (126)
T cd04663          15 ELLVFEHP----LAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCEVDQDLPDS   90 (126)
T ss_pred             EEEEEEcC----CCcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEEecCCCccc
Confidence            67777654    24599999999999999999999999999999732222 2222211  1334444444544211  1 


Q ss_pred             ---CCCCCCcee--EEEecCCCCCCC
Q 023914          227 ---FSPGPESSE--CRLFALDEIPFD  247 (275)
Q Consensus       227 ---~~~~~E~~d--~~W~~~deL~~~  247 (275)
                         ....+|...  +.|+++++++..
T Consensus        91 ~~~~~~~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          91 WVHFVQDDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             ccCcccCCCCceEEEEEEcccccccc
Confidence               112234444  459999999753

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PLN02709 nudix hydrolase

Probab=99.34  E-value=4.8e-12  Score=112.36  Aligned_cols=95  Identities=21%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             CeEEEEEeccC--CCCCceeeeeEEeeCC-CCHHHHHHHHHHHHhCCccccceeeEEEE--eCCCCEEEEEEEEEEcC--
Q 023914          152 KKILLCKRKIE--PSYGLWTLPAGYMEIG-ESAAEGAIRETWEEARADVEVQSPFAQLD--IPRIGQIYIIFLAKLKR--  224 (275)
Q Consensus       152 ~~iLL~rr~~~--p~~g~w~lPgG~vE~G-Es~eeAa~REl~EEtGl~v~~~~~~~~~~--~~~~~~~~~~f~a~~~~--  224 (275)
                      .+|||.+|+..  +..|.|+||||++|+| +++.+||+||++||+|+....++.++..+  .+..+....-|.+.+..  
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            38999999876  3589999999999997 57899999999999999998888887654  22234445556665543  


Q ss_pred             -CCCCCC-CCceeEEEecCCCCCC
Q 023914          225 -PHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       225 -~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                       ..+.++ +|.+++.|++++++..
T Consensus       131 ~~~~~~np~EV~~vf~vPL~~ll~  154 (222)
T PLN02709        131 AFKPLPNPAEVEEIFDVPLEMFLK  154 (222)
T ss_pred             CccccCChhhhheeEEecHHHHhC
Confidence             123345 7999999999998754

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.24  E-value=1.3e-10  Score=92.46  Aligned_cols=104  Identities=27%  Similarity=0.387  Sum_probs=68.0

Q ss_pred             EEEEEEeeC--CeEEEEEeccCCCCCceeeeeEEeeCCCCHHH-HHHHHHHHHhCCccc--cceeeEEEEeCCCC-----
Q 023914          143 VVGCLIEHD--KKILLCKRKIEPSYGLWTLPAGYMEIGESAAE-GAIRETWEEARADVE--VQSPFAQLDIPRIG-----  212 (275)
Q Consensus       143 ~V~viI~~~--~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~ee-Aa~REl~EEtGl~v~--~~~~~~~~~~~~~~-----  212 (275)
                      ++.+++..+  .++|+.+|....  +.|.+|||.+|.||+.++ ||+||++||||+.+.  ....++.+......     
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~--~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   90 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVG   90 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccC--CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCccccc
Confidence            333434333  789999888543  689999999999999888 999999999999988  56665555432221     


Q ss_pred             -EEE-EEEEEEEc---CCCCCC----CCCceeEEEecCCCCCCCC
Q 023914          213 -QIY-IIFLAKLK---RPHFSP----GPESSECRLFALDEIPFDS  248 (275)
Q Consensus       213 -~~~-~~f~a~~~---~~e~~~----~~E~~d~~W~~~deL~~~~  248 (275)
                       ... ..+.....   ......    ..|..+..|++.+++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  135 (161)
T COG0494          91 GREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV  135 (161)
T ss_pred             ceEEEEEEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence             111 12222211   111111    1467889999999987543

>PLN03143 nudix hydrolase; Provisional

Probab=99.18  E-value=1.5e-10  Score=106.72  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             ccCCc-EEEEEEEeeCCe--EEEEEeccCCC-CCceeeeeEEeeC-CCCHHHHHHHHHHHHhCCcccc--ceee------
Q 023914          137 YQNPK-MVVGCLIEHDKK--ILLCKRKIEPS-YGLWTLPAGYMEI-GESAAEGAIRETWEEARADVEV--QSPF------  203 (275)
Q Consensus       137 y~~p~-~~V~viI~~~~~--iLL~rr~~~p~-~g~w~lPgG~vE~-GEs~eeAa~REl~EEtGl~v~~--~~~~------  203 (275)
                      +.++. ++|.++++.+++  ++|++|.+.|. .-.|++|||.+|+ ||++++||+||++||||+.+..  ...+      
T Consensus       125 ~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~  204 (291)
T PLN03143        125 FARGPAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDP  204 (291)
T ss_pred             EEcCCeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeecccc
Confidence            44443 344444454444  99999998663 4579999999997 4899999999999999998643  2222      


Q ss_pred             ----EEEEeCCC-CEEEEEEEEEEcCC---------C---CCCCCCceeEEEecCCCCC
Q 023914          204 ----AQLDIPRI-GQIYIIFLAKLKRP---------H---FSPGPESSECRLFALDEIP  245 (275)
Q Consensus       204 ----~~~~~~~~-~~~~~~f~a~~~~~---------e---~~~~~E~~d~~W~~~deL~  245 (275)
                          ..++.+.. ...+..|.+.....         .   ....+|..++.|++.+++-
T Consensus       205 ~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw  263 (291)
T PLN03143        205 STGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELW  263 (291)
T ss_pred             CcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHH
Confidence                22233221 23444555443211         1   1123566789999999965

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.17  E-value=1.4e-10  Score=104.71  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             EEEEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCC-----------------HHHHHHHHHHHHhCCcccc-----
Q 023914          145 GCLIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGES-----------------AAEGAIRETWEEARADVEV-----  199 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs-----------------~eeAa~REl~EEtGl~v~~-----  199 (275)
                      +.|.+.++++||+||+...  .+|+|+.. +|++..||+                 ..+||+||++||+||.+..     
T Consensus        61 v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~  140 (247)
T PLN02552         61 VFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQ  140 (247)
T ss_pred             EEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcccccccc
Confidence            3445677899999998754  58999766 455544422                 6789999999999998643     


Q ss_pred             ceeeEEEEeCC---------C----CEEEEEEEEE-EcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          200 QSPFAQLDIPR---------I----GQIYIIFLAK-LKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       200 ~~~~~~~~~~~---------~----~~~~~~f~a~-~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      +.+++.+.+..         .    +...++|... ...+++.++ +|+.+++|+++++++.
T Consensus       141 l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~~el~~  202 (247)
T PLN02552        141 FTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNREELKE  202 (247)
T ss_pred             ceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeHHHHHH
Confidence            45555433211         1    2222333333 223456666 8999999999999874

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.12  E-value=8.3e-10  Score=86.70  Aligned_cols=102  Identities=22%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             EEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL  219 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~  219 (275)
                      .+++++.+++++||.||.... .+|+|+||+|.++.+|+.+++..||+.||.++   ....++.....+.+  ..+.+|.
T Consensus         5 ~~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~   81 (118)
T cd03431           5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYL   81 (118)
T ss_pred             EEEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEE
Confidence            445556667899999997654 58999999999999999999999999999765   22234444444433  4566787


Q ss_pred             EEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcH
Q 023914          220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS  253 (275)
Q Consensus       220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s  253 (275)
                      +....+.    .+..+.+|++.++++.  ++++.
T Consensus        82 ~~~~~~~----~~~~~~~W~~~eel~~--~~~p~  109 (118)
T cd03431          82 ARLEGDL----LAPDEGRWVPLEELDE--YALPT  109 (118)
T ss_pred             EEEeCCC----cCccccEEccHHHHhh--CCCCH
Confidence            7765542    2446789999999984  44444

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>PLN02791 Nudix hydrolase homolog

Probab=99.02  E-value=9.6e-10  Score=112.65  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             EEEEEEE-ee-CCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccc--cceeeEEEEe----CC
Q 023914          142 MVVGCLI-EH-DKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLDI----PR  210 (275)
Q Consensus       142 ~~V~viI-~~-~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~--~~~~~~~~~~----~~  210 (275)
                      .++.+++ +. ++++||+||+...  .+|.|++ +||+++.||+.++|++||+.||+||.+.  .+.+++.+..    ..
T Consensus        33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~  112 (770)
T PLN02791         33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND  112 (770)
T ss_pred             EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence            4454444 43 5899999998654  4899999 6999999999999999999999999863  3444444311    11


Q ss_pred             ----CCEEEEEEEEEEcCC----CCCCC-CCceeEEEecCCCCC
Q 023914          211 ----IGQIYIIFLAKLKRP----HFSPG-PESSECRLFALDEIP  245 (275)
Q Consensus       211 ----~~~~~~~f~a~~~~~----e~~~~-~E~~d~~W~~~deL~  245 (275)
                          .+....+|.+.....    ++.++ +|+.+++|++.+|+.
T Consensus       113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~  156 (770)
T PLN02791        113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYK  156 (770)
T ss_pred             CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHH
Confidence                124455676654332    34555 899999999999975

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=98.94  E-value=7.1e-10  Score=91.42  Aligned_cols=92  Identities=26%  Similarity=0.355  Sum_probs=63.6

Q ss_pred             CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-eCCCC-EE----EEEEEEEEcCC
Q 023914          152 KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-IPRIG-QI----YIIFLAKLKRP  225 (275)
Q Consensus       152 ~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~~~~-~~----~~~f~a~~~~~  225 (275)
                      -+|||+..+..+  ..|.+|+|++|+||+..+||.||++||.|+.....+.++.+. +.... ..    +++.++....-
T Consensus        24 ieVLlvsSs~~~--~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~k~~~~~l~v~e~l  101 (145)
T KOG2839|consen   24 IEVLLVSSSKKP--HRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKPKGVMYVLAVTEEL  101 (145)
T ss_pred             eEEEEEecCCCC--CCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccccceeehhhhhhhc
Confidence            389999987643  569999999999999999999999999999988888655443 22211 11    11122222222


Q ss_pred             CCCCC--CCceeEEEecCCCCC
Q 023914          226 HFSPG--PESSECRLFALDEIP  245 (275)
Q Consensus       226 e~~~~--~E~~d~~W~~~deL~  245 (275)
                      +..++  .|..+.+|+.++|.-
T Consensus       102 e~wp~~~~~~r~r~W~~ledA~  123 (145)
T KOG2839|consen  102 EDWPESEHEFREREWLKLEDAI  123 (145)
T ss_pred             ccChhhhcccceeEEeeHHHHH
Confidence            23333  457789999999854

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.88  E-value=1.1e-08  Score=88.41  Aligned_cols=107  Identities=23%  Similarity=0.186  Sum_probs=72.6

Q ss_pred             CcEEEEEEEeeCC--eEEEEEeccCCCCC-ceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee-eEEEE---eCCCC
Q 023914          140 PKMVVGCLIEHDK--KILLCKRKIEPSYG-LWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP-FAQLD---IPRIG  212 (275)
Q Consensus       140 p~~~V~viI~~~~--~iLL~rr~~~p~~g-~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~-~~~~~---~~~~~  212 (275)
                      +.+++.+++..++  .++|+++.+.|-++ -.++|+|-+|.||+.++||+||++||||+.-+.... ...+.   +.+-+
T Consensus        74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~  153 (225)
T KOG3041|consen   74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCN  153 (225)
T ss_pred             CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCc
Confidence            3456666666655  68999999888433 388999999999999999999999999998433221 11222   22334


Q ss_pred             EEEEEEEEEEcCCC-CC----C-CCCceeEEEecCCCCCC
Q 023914          213 QIYIIFLAKLKRPH-FS----P-GPESSECRLFALDEIPF  246 (275)
Q Consensus       213 ~~~~~f~a~~~~~e-~~----~-~~E~~d~~W~~~deL~~  246 (275)
                      ..++.+..+....+ .+    + +.|..++.-++..+|..
T Consensus       154 ~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~  193 (225)
T KOG3041|consen  154 LCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWR  193 (225)
T ss_pred             eEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHH
Confidence            56666666654433 11    2 37778888888877653

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=98.82  E-value=1.3e-09  Score=68.93  Aligned_cols=34  Identities=41%  Similarity=1.094  Sum_probs=22.5

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      +|||.||++++...++||+..|.+|++||+++|.
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~IhY~   34 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCPACGFIHYQ   34 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEETTTTEEE--
T ss_pred             CccccccChhhhhcCCCCCccceECCCCCCEEeC
Confidence            6999999999999999999999999999999983

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.77  E-value=1.9e-08  Score=89.14  Aligned_cols=115  Identities=23%  Similarity=0.195  Sum_probs=79.2

Q ss_pred             CCCccccCCcEEEEEEEeeC----CeEEEEEeccCC--CCCceeeeeEEeeCC-CCHHHHHHHHHHHHhCCccccceeeE
Q 023914          132 CGKIAYQNPKMVVGCLIEHD----KKILLCKRKIEP--SYGLWTLPAGYMEIG-ESAAEGAIRETWEEARADVEVQSPFA  204 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~----~~iLL~rr~~~p--~~g~w~lPgG~vE~G-Es~eeAa~REl~EEtGl~v~~~~~~~  204 (275)
                      |....++++..+|.+.+..+    .++||.||.+.-  ..|.-+||||.+|+. ++-+++|.||.+||.|++...+.+++
T Consensus        34 ~~~~~~~~~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g  113 (246)
T KOG3069|consen   34 SETHDFPNRKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLG  113 (246)
T ss_pred             cccccCCCCCccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhh
Confidence            44455577777766555332    489999998653  378999999999964 67888999999999999987777666


Q ss_pred             EEE---eCCC--CEEEEEEEEEEcC-CCCCCC-CCceeEEEecCCCCCC
Q 023914          205 QLD---IPRI--GQIYIIFLAKLKR-PHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       205 ~~~---~~~~--~~~~~~f~a~~~~-~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ..+   .+..  -.-+++|.....- ....++ +|..++.|++++++-.
T Consensus       114 ~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  114 ALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             hccceeeccCcccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence            443   1111  1223445444321 223444 8999999999999764

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=98.70  E-value=5.6e-09  Score=65.16  Aligned_cols=32  Identities=31%  Similarity=0.643  Sum_probs=22.7

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y  137 (275)
                      ++++|||+||+++...    ++++.++|++||..+|
T Consensus         1 ~~~rfC~~CG~~t~~~----~~g~~r~C~~Cg~~~y   32 (32)
T PF09297_consen    1 RNHRFCGRCGAPTKPA----PGGWARRCPSCGHEHY   32 (32)
T ss_dssp             HTTSB-TTT--BEEE-----SSSS-EEESSSS-EE-
T ss_pred             CCCcccCcCCccccCC----CCcCEeECCCCcCEeC
Confidence            4789999999999888    7899999999999887

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.65  E-value=9.6e-08  Score=75.72  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             EEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFLA  220 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~a  220 (275)
                      |.+++++++++||.||.... .+|+|+||.-.++ +++..+.+.+.+.+..|+.+.....++.+...+.|  ..+.+|.+
T Consensus         1 ~~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~   79 (114)
T PF14815_consen    1 VLLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESD-EEDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV   79 (114)
T ss_dssp             EEEEEETTSEEEEEE--SSSTTTT-EE--EEE-S-SS-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred             CEEEEEeCCEEEEEECCCCChhhcCcccCEeCcc-CCCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence            45678899999999999754 5899999997776 44446666666777888888777777877766665  45567888


Q ss_pred             EEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHH
Q 023914          221 KLKRPHFSPGPESSECRLFALDEIPFDSLAFSSI  254 (275)
Q Consensus       221 ~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~  254 (275)
                      .+......   +..+.+|++.+++.  .+++|..
T Consensus        80 ~~~~~~~~---~~~~~~W~~~~~l~--~~~~p~~  108 (114)
T PF14815_consen   80 EVSADPPA---EPEEGQWVSLEELD--QYPLPTP  108 (114)
T ss_dssp             EEE-SS-------TTEEEEEGGGGG--GS---HH
T ss_pred             EecCCCCC---CCCCcEEEEHHHHh--hCCCCHH
Confidence            87765322   34678999999998  5666653

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=1.8e-07  Score=85.81  Aligned_cols=109  Identities=25%  Similarity=0.351  Sum_probs=73.6

Q ss_pred             cEEEEEEE-eeCCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE---EEeCCC-CE
Q 023914          141 KMVVGCLI-EHDKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ---LDIPRI-GQ  213 (275)
Q Consensus       141 ~~~V~viI-~~~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~---~~~~~~-~~  213 (275)
                      .+.|++.| +.+++||+++.....  ..|.|-+|+|.|++||++-++++||++||||++......+..   ..-.+. ..
T Consensus       115 ~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~k  194 (295)
T KOG0648|consen  115 RVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIK  194 (295)
T ss_pred             heeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhccc
Confidence            45565555 455699999865443  478999999999999999999999999999997654443331   111111 12


Q ss_pred             EEEEEEEEEcCC--CCCC-CCCceeEEEecCCCCCCCCC
Q 023914          214 IYIIFLAKLKRP--HFSP-GPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       214 ~~~~f~a~~~~~--e~~~-~~E~~d~~W~~~deL~~~~l  249 (275)
                      .-++|.+.+...  ++.. +.|+..+.|++.++......
T Consensus       195 sd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648|consen  195 SDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             ccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccc
Confidence            334566665432  2333 36788889999998765443

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.23  E-value=1.5e-06  Score=73.97  Aligned_cols=101  Identities=19%  Similarity=0.271  Sum_probs=73.1

Q ss_pred             EEEEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccc---eeeEEEEe--CC-----C
Q 023914          145 GCLIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQ---SPFAQLDI--PR-----I  211 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~---~~~~~~~~--~~-----~  211 (275)
                      ..+.+.+|++||.||+...  ++|.|.-- +|+=-+||+.++|++|-+.+|+||++...   +++..+.+  +.     .
T Consensus        38 ~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E  117 (185)
T COG1443          38 SFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVE  117 (185)
T ss_pred             eeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcce
Confidence            3455778999999998654  47888765 78878999999999999999999998632   22222222  11     1


Q ss_pred             CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          212 GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      +.+..++.++... .+.++ +|..+++|++++++-.
T Consensus       118 ~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~  152 (185)
T COG1443         118 NEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKE  152 (185)
T ss_pred             eeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHH
Confidence            2444566666655 45554 8999999999999764

>PLN02839 nudix hydrolase

Probab=98.12  E-value=1.4e-05  Score=75.65  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             CeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccc---cceeeEEEEeC--C----CCEEEEEEE
Q 023914          152 KKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVE---VQSPFAQLDIP--R----IGQIYIIFL  219 (275)
Q Consensus       152 ~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~---~~~~~~~~~~~--~----~~~~~~~f~  219 (275)
                      .++.+.||+..+  .+|+|+.- ||.+..||++.++++||.+||.||...   .....|...+-  .    .....++|-
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YD  297 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYD  297 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEee
Confidence            468888888654  48999866 899999999999999999999999743   34444544321  1    112233466


Q ss_pred             EEEcCCC-CCC-CCCceeEEEecCCCCC
Q 023914          220 AKLKRPH-FSP-GPESSECRLFALDEIP  245 (275)
Q Consensus       220 a~~~~~e-~~~-~~E~~d~~W~~~deL~  245 (275)
                      .++..+- +.+ ++|++++.+++.+|+.
T Consensus       298 LeLP~df~P~~qDGEVe~F~Lm~v~EV~  325 (372)
T PLN02839        298 LELPQDFVPKNQDGEVESFKLIPVAQVA  325 (372)
T ss_pred             eecCCccccCCCccceeEEEEecHHHHH
Confidence            6655442 233 4899999999999975

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.09  E-value=4.7e-06  Score=67.61  Aligned_cols=80  Identities=25%  Similarity=0.295  Sum_probs=53.7

Q ss_pred             CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc-eeeEEEEeCCCCEEEE----------------EEEEEEcCC--
Q 023914          165 YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDIPRIGQIYI----------------IFLAKLKRP--  225 (275)
Q Consensus       165 ~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~-~~~~~~~~~~~~~~~~----------------~f~a~~~~~--  225 (275)
                      .|-|++|.|....||.++.||+||.-||+||.++-. ..++...-+. +.+..                .|..++...  
T Consensus        35 ~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~G-GKvVta~~veae~Dva~~rSntFe~eWPprSG  113 (161)
T COG4119          35 DGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSG-GKVVTAFGVEAELDVADARSNTFELEWPPRSG  113 (161)
T ss_pred             CCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCC-CcEEEEEeeeeeeehhhhhcceeeeecCCCCC
Confidence            688999999999999999999999999999988432 2234333222 22222                233333221  


Q ss_pred             CCCCCCCceeEEEecCCCCC
Q 023914          226 HFSPGPESSECRLFALDEIP  245 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~  245 (275)
                      ..+.-.|.+.+.||++.+..
T Consensus       114 ~M~~FPEVDRagWF~l~eAr  133 (161)
T COG4119         114 KMRKFPEVDRAGWFPLAEAR  133 (161)
T ss_pred             ccccCcccccccceecHHHH
Confidence            12223788889999998865

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=97.44  E-value=0.00025  Score=48.48  Aligned_cols=39  Identities=33%  Similarity=0.585  Sum_probs=29.0

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEE
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVG  145 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~  145 (275)
                      +|||.||..+....  ++...+.+|+.||+..+.++..+..
T Consensus         1 ~FCp~Cg~~l~~~~--~~~~~~~vC~~Cg~~~~~~~~~~~~   39 (52)
T smart00661        1 KFCPKCGNMLIPKE--GKEKRRFVCRKCGYEEPIEQKYVYK   39 (52)
T ss_pred             CCCCCCCCcccccc--CCCCCEEECCcCCCeEECCCcEEEE
Confidence            59999999875552  1223478999999999988874443

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00014  Score=49.40  Aligned_cols=35  Identities=29%  Similarity=0.562  Sum_probs=27.9

Q ss_pred             hhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      .+.++|||+||..+-+.    +.+.|+.|..||...|.+
T Consensus        16 ~rk~~~CPrCG~gvfmA----~H~dR~~CGkCgyTe~~~   50 (51)
T COG1998          16 KRKNRFCPRCGPGVFMA----DHKDRWACGKCGYTEFKK   50 (51)
T ss_pred             EEccccCCCCCCcchhh----hcCceeEeccccceEeec
Confidence            46789999999876666    345699999999988864

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0021  Score=56.97  Aligned_cols=39  Identities=33%  Similarity=0.547  Sum_probs=34.2

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhC
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR  194 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtG  194 (275)
                      +++.++|.   ..|.|.+|||.||+||.+-.+++||+.||.=
T Consensus       140 e~vavkr~---d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRP---DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecC---CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            56677776   5789999999999999999999999999964

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=97.15  E-value=0.00028  Score=48.47  Aligned_cols=32  Identities=31%  Similarity=0.588  Sum_probs=24.6

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      +.++|||.||+. -+.    ....+..|..||+..|.
T Consensus        18 ~~~~fCP~Cg~~-~m~----~~~~r~~C~~Cgyt~~~   49 (50)
T PRK00432         18 RKNKFCPRCGSG-FMA----EHLDRWHCGKCGYTEFK   49 (50)
T ss_pred             EccCcCcCCCcc-hhe----ccCCcEECCCcCCEEec
Confidence            467899999996 333    23468899999999885

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.13  E-value=0.0028  Score=53.67  Aligned_cols=102  Identities=20%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             EEEEeeCCeEEEEEeccCCC----CCceeee-eEEeeCCC--C-HHH----HHHHHHHHHhCCc---cccceeeEEEEeC
Q 023914          145 GCLIEHDKKILLCKRKIEPS----YGLWTLP-AGYMEIGE--S-AAE----GAIRETWEEARAD---VEVQSPFAQLDIP  209 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p~----~g~w~lP-gG~vE~GE--s-~ee----Aa~REl~EEtGl~---v~~~~~~~~~~~~  209 (275)
                      .|++.++++||+-.|-....    .+.+++- ||++..++  + .++    .+.||+.||+++.   ...+.++|.....
T Consensus        65 Yvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd  144 (203)
T COG4112          65 YVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD  144 (203)
T ss_pred             EEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence            34677888999999976542    5678876 89998654  3 333    2679999999998   4566777766433


Q ss_pred             CC---C-EEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          210 RI---G-QIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       210 ~~---~-~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ..   . ++-+.|..+....++... .+..++.|+..++|..
T Consensus       145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            22   1 223456666655555443 5667899999999873

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=96.87  E-value=0.00018  Score=66.94  Aligned_cols=108  Identities=24%  Similarity=0.266  Sum_probs=74.0

Q ss_pred             CCccccCCcEEEEEEEeeC--CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEEe
Q 023914          133 GKIAYQNPKMVVGCLIEHD--KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLDI  208 (275)
Q Consensus       133 g~~~y~~p~~~V~viI~~~--~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~~  208 (275)
                      .+.-|..+.|+.++++.+.  .++||++.-.   ...|.+|-|++..+|+..+++.|||.||+|.++...  ...+ .+.
T Consensus        74 ~f~~yk~~iPv~ga~ild~~~sr~llv~g~q---a~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~  149 (348)
T KOG2937|consen   74 DFAPYKARIPVRGAIILDEKRSRCLLVKGWQ---ASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET  149 (348)
T ss_pred             hhccccCCCCCchHhhhhhhhhhhheeecee---cccccccCccccccchhhhcchhcccchhhcCHHHHhccccC-ccc
Confidence            3556777888887777543  5899988653   344999999999999999999999999999987432  1111 222


Q ss_pred             CCCCEEEEEEEEEEcCCC----CCCCCCceeEEEecCCCC
Q 023914          209 PRIGQIYIIFLAKLKRPH----FSPGPESSECRLFALDEI  244 (275)
Q Consensus       209 ~~~~~~~~~f~a~~~~~e----~~~~~E~~d~~W~~~deL  244 (275)
                      ...+.....|.......+    +..-.|+..+.|+..+++
T Consensus       150 nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l  189 (348)
T KOG2937|consen  150 NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL  189 (348)
T ss_pred             chhhceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence            223334433444222222    233478889999999998

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.56  E-value=0.015  Score=55.30  Aligned_cols=101  Identities=12%  Similarity=0.097  Sum_probs=56.9

Q ss_pred             EEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFLA  220 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~a  220 (275)
                      ..+++.+++++||.+|.... .+|+|+||..  +   + ++ ..++..|+.|+.......++.....+.|  ..+..|.+
T Consensus       234 ~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~---~-~~-~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~~~~  306 (350)
T PRK10880        234 YFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--A---D-EE-ELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVPMWL  306 (350)
T ss_pred             EEEEEEECCEEEEEECCccChhhccccCCCC--c---c-hh-hHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEEEEE
Confidence            33455678899999998654 5899999962  2   1 12 2355667888753222223333333333  33445555


Q ss_pred             EEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHH
Q 023914          221 KLKRPHFSPGPESSECRLFALDEIPFDSLAFSSIS  255 (275)
Q Consensus       221 ~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~  255 (275)
                      ..........  ..+..|++++++.  .+++|+..
T Consensus       307 ~~~~~~~~~~--~~~~~w~~~~~~~--~~~~p~~~  337 (350)
T PRK10880        307 PVSSFTGCMD--EGNGLWYNLAQPP--SVGLAAPV  337 (350)
T ss_pred             EccccccccC--CcCCeEechHHhc--ccCCcHHH
Confidence            5432211111  1234699999999  56677643

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=96.07  E-value=0.0028  Score=36.50  Aligned_cols=22  Identities=27%  Similarity=0.936  Sum_probs=17.2

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      |||+||+++...        ...|+.||..
T Consensus         1 ~Cp~CG~~~~~~--------~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDD--------AKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCc--------CcchhhhCCc
Confidence            799999997432        4679999964

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=95.90  E-value=0.026  Score=49.05  Aligned_cols=61  Identities=25%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             EEEEeeCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc------ccceeeEEEEeC
Q 023914          145 GCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV------EVQSPFAQLDIP  209 (275)
Q Consensus       145 ~viI~~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v------~~~~~~~~~~~~  209 (275)
                      ++++...+  .|||.|..    ...|.+|||.+.+||+.++...|.+.|-.|..-      ...+.++.+-.|
T Consensus        49 Vllvh~h~~PHvLLLq~~----~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp  117 (188)
T PF13869_consen   49 VLLVHEHGHPHVLLLQIG----NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRP  117 (188)
T ss_dssp             EEEEEETTEEEEEEEEET----TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEES
T ss_pred             EEEEecCCCcEEEEEecc----CccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCC
Confidence            33444443  68988865    348999999999999999999999999999752      334566666444

...

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=95.16  E-value=0.01  Score=35.08  Aligned_cols=24  Identities=29%  Similarity=0.718  Sum_probs=17.9

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      .++||.||+.+..        ..+.|+.||..
T Consensus         2 ~~~Cp~Cg~~~~~--------~~~fC~~CG~~   25 (26)
T PF13248_consen    2 EMFCPNCGAEIDP--------DAKFCPNCGAK   25 (26)
T ss_pred             cCCCcccCCcCCc--------ccccChhhCCC
Confidence            3799999996422        35789999964

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=95.04  E-value=0.0062  Score=38.67  Aligned_cols=30  Identities=30%  Similarity=0.616  Sum_probs=19.5

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .+|||.||.-|.....  ..... .|..|++..
T Consensus         1 m~FCp~C~nlL~p~~~--~~~~~-~C~~C~Y~~   30 (35)
T PF02150_consen    1 MRFCPECGNLLYPKED--KEKRV-ACRTCGYEE   30 (35)
T ss_dssp             --BETTTTSBEEEEEE--TTTTE-EESSSS-EE
T ss_pred             CeeCCCCCccceEcCC--CccCc-CCCCCCCcc
Confidence            3799999999977632  22233 799999764

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=94.48  E-value=0.031  Score=32.51  Aligned_cols=24  Identities=29%  Similarity=0.671  Sum_probs=19.8

Q ss_pred             CcCCCCCCcccccCCCccceeecCCCCC
Q 023914          107 CQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      |..||..+...    +......||+||+
T Consensus         1 C~sC~~~i~~r----~~~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPR----EQAVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCc----ccCceEeCCCCCC
Confidence            78899998766    4478899999995

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=94.47  E-value=0.025  Score=33.49  Aligned_cols=24  Identities=25%  Similarity=0.621  Sum_probs=18.6

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      +.||.||+.....        .+.|+.||+..
T Consensus         1 K~CP~C~~~V~~~--------~~~Cp~CG~~F   24 (26)
T PF10571_consen    1 KTCPECGAEVPES--------AKFCPHCGYDF   24 (26)
T ss_pred             CcCCCCcCCchhh--------cCcCCCCCCCC
Confidence            5799999996333        57899999864

Several members are annotated as putative helicases.

>PF12773 DZR: Double zinc ribbon

Probab=93.39  E-value=0.048  Score=36.80  Aligned_cols=33  Identities=27%  Similarity=0.610  Sum_probs=24.4

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      ...+||+.||.++..     .......|+.||....++
T Consensus        10 ~~~~fC~~CG~~l~~-----~~~~~~~C~~Cg~~~~~~   42 (50)
T PF12773_consen   10 DDAKFCPHCGTPLPP-----PDQSKKICPNCGAENPPN   42 (50)
T ss_pred             ccccCChhhcCChhh-----ccCCCCCCcCCcCCCcCC
Confidence            347899999999872     234567899999875544

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.25  E-value=0.066  Score=46.95  Aligned_cols=99  Identities=26%  Similarity=0.309  Sum_probs=61.6

Q ss_pred             EEEeeCCeEEEEEeccCC--CCCceee---------eeEEee-CCCCHHHHHHHHHHHHhCCcccc-----ceeeEEEEe
Q 023914          146 CLIEHDKKILLCKRKIEP--SYGLWTL---------PAGYME-IGESAAEGAIRETWEEARADVEV-----QSPFAQLDI  208 (275)
Q Consensus       146 viI~~~~~iLL~rr~~~p--~~g~w~l---------PgG~vE-~GEs~eeAa~REl~EEtGl~v~~-----~~~~~~~~~  208 (275)
                      .+.+.++++||++|+...  .++.|.-         |+.--+ .+..+..||.|-+.-|+||..+.     +.+++...+
T Consensus        58 FlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihY  137 (225)
T KOG0142|consen   58 FLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHY  137 (225)
T ss_pred             EEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeee
Confidence            345678999999998653  3455532         222111 23357889999999999997643     445655443


Q ss_pred             CCC--------CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          209 PRI--------GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       209 ~~~--------~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      ..+        ..-|+.|...  +-.+.++ +|..+++|++.+||..
T Consensus       138 kA~sdg~wGEhEiDYiL~~~~--~~~~nPnpnEv~e~ryvs~eelke  182 (225)
T KOG0142|consen  138 KAPSDGIWGEHEIDYILFLVK--DVTLNPNPNEVSEIRYVSREELKE  182 (225)
T ss_pred             ecCCCCCcccceeeEEEEEec--cCCCCCChhhhhHhheecHHHHHH
Confidence            221        1333434333  2235565 8999999999999763

>PRK13910 DNA glycosylase MutY; Provisional

Probab=93.18  E-value=0.59  Score=43.46  Aligned_cols=84  Identities=15%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIFLAK  221 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f~a~  221 (275)
                      ..+++.+++++||.||...-.+|+|+||..  +.              +.+....   .++.....+.  ...+.+|.+.
T Consensus       189 ~~~~~~~~~~~ll~kr~~~l~~gl~~fP~~--~~--------------~~~~~~~---~~~~~~H~fTH~~~~~~~~~~~  249 (289)
T PRK13910        189 YLGVVIQNNQIALEKIEQKLYLGMHHFPNL--KE--------------NLEYKLP---FLGAIKHSHTKFKLNLNLYLAA  249 (289)
T ss_pred             EEEEEEECCEEEEEECCCchhcccccCCCC--hh--------------hhccccc---ccCceEEEEEeEEEEEEEEEEE
Confidence            344455678999999854335899999962  21              0111111   1222222222  2344556555


Q ss_pred             EcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHH
Q 023914          222 LKRPHFSPGPESSECRLFALDEIPFDSLAFSSIS  255 (275)
Q Consensus       222 ~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~  255 (275)
                      ....       ..+.+|++.+++.  .+++|+..
T Consensus       250 ~~~~-------~~~~~w~~~~~~~--~~~~p~~~  274 (289)
T PRK13910        250 IKDL-------KNPIRFYSLKDLE--TLPISSMT  274 (289)
T ss_pred             eccC-------CccceEecHHHhh--hcCCcHHH
Confidence            4311       1345899999998  56666643

>PF09296 NUDIX-like: NADH pyrophosphatase-like rudimentary NUDIX domain; InterPro: IPR015375 This entry represents the N-terminal domain found in NADH pyrophosphatase

Probab=93.15  E-value=0.038  Score=41.85  Aligned_cols=32  Identities=6%  Similarity=-0.119  Sum_probs=22.3

Q ss_pred             eecceeecccccc-cCCCCCccHHHHHHHHHhh
Q 023914           69 FRASRVCATRSES-NQDATSSHPSSAAVHSAGN  100 (275)
Q Consensus        69 ~~~~~~~~~r~~~-~~~~~~~~~~~~a~~l~~w  100 (275)
                      -.++++++||+++ .+++.+++++++|+||.+|
T Consensus        66 ~~~~~~~~LR~~~~~l~~~~~~l~a~A~~ll~W   98 (98)
T PF09296_consen   66 PEGFEFVDLRQLGGQLPEEDAGLAARARQLLDW   98 (98)
T ss_dssp             -----EE-GGGGT-TS-HHHHHHHHHHHHHHH-
T ss_pred             cccccchhHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence            3566778999887 5899999999999999999

Nitrate reductase inactivator (NRI) protein shares 51.1-68.3% of its amino acid sequence with three types of the nucleotide pyrophosphatase-like protein from Arabidopsis thaliana.; GO: 0016787 hydrolase activity; PDB: 1VK6_A 2GB5_A.

>PRK00420 hypothetical protein; Validated

Probab=92.67  E-value=0.11  Score=41.72  Aligned_cols=32  Identities=25%  Similarity=0.514  Sum_probs=23.8

Q ss_pred             hhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914           99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus        99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      +|..-...||.||.++...    .. -..+||.||..
T Consensus        18 Ga~ml~~~CP~Cg~pLf~l----k~-g~~~Cp~Cg~~   49 (112)
T PRK00420         18 GAKMLSKHCPVCGLPLFEL----KD-GEVVCPVHGKV   49 (112)
T ss_pred             HHHHccCCCCCCCCcceec----CC-CceECCCCCCe
Confidence            5666779999999998652    12 25799999963

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=92.55  E-value=0.12  Score=34.01  Aligned_cols=34  Identities=21%  Similarity=0.499  Sum_probs=26.4

Q ss_pred             HHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCC
Q 023914           95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCG  133 (275)
Q Consensus        95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg  133 (275)
                      .-|..|..-..+||.||.++-..    .++ ...|+.|+
T Consensus         8 ~LL~G~~ML~~~Cp~C~~PL~~~----k~g-~~~Cv~C~   41 (41)
T PF06677_consen    8 YLLQGWTMLDEHCPDCGTPLMRD----KDG-KIYCVSCG   41 (41)
T ss_pred             HHHHhHhHhcCccCCCCCeeEEe----cCC-CEECCCCC
Confidence            45778999999999999998653    222 47899996

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]

Probab=92.52  E-value=0.079  Score=42.47  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=26.5

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP  140 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p  140 (275)
                      .+|||.||+-|.....  +.+....|..||...=-..
T Consensus         2 m~FCp~Cgsll~p~~~--~~~~~l~C~kCgye~~~~~   36 (113)
T COG1594           2 MRFCPKCGSLLYPKKD--DEGGKLVCRKCGYEEEASN   36 (113)
T ss_pred             ccccCCccCeeEEeEc--CCCcEEECCCCCcchhccc
Confidence            5899999999987643  2345899999997765443

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=92.33  E-value=0.19  Score=43.00  Aligned_cols=39  Identities=28%  Similarity=0.395  Sum_probs=34.3

Q ss_pred             CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhC
Q 023914          152 KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR  194 (275)
Q Consensus       152 ~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtG  194 (275)
                      -.|||.+-.    .-.+.+|||..++||+-.+.+.|-+-|-+|
T Consensus        84 PHvLLLQig----~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   84 PHVLLLQIG----NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             CeEEEEeeC----CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            578887743    457999999999999999999999999999

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=91.98  E-value=0.39  Score=44.68  Aligned_cols=59  Identities=20%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             eeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----CCCCEEEEEEEEEEcCCC
Q 023914          168 WTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----PRIGQIYIIFLAKLKRPH  226 (275)
Q Consensus       168 w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----~~~~~~~~~f~a~~~~~e  226 (275)
                      .++-||-|+..-|+.|-|..|+.||.|.++..-.++.++++    ...++.++.|+|++.+..
T Consensus        81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~es~  143 (405)
T KOG4432|consen   81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDESM  143 (405)
T ss_pred             eeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecchhh
Confidence            56779999999999999999999999999977766665554    234577888999987653

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=91.85  E-value=0.1  Score=41.33  Aligned_cols=51  Identities=20%  Similarity=0.328  Sum_probs=33.5

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCccccCCcE----------EEEEEEeeCCeEEEEEec
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM----------VVGCLIEHDKKILLCKRK  160 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~----------~V~viI~~~~~iLL~rr~  160 (275)
                      .-||+|++.....     ++.-..||.|+++.-+.-..          +.+.++.++|.|.|++--
T Consensus         3 p~CP~C~seytY~-----dg~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG~~L~dGDsV~liKDL   63 (109)
T TIGR00686         3 PPCPKCNSEYTYH-----DGTQLICPSCLYEWNENEVNDDDDELIVKDCNGNLLANGDSVILIKDL   63 (109)
T ss_pred             CcCCcCCCcceEe-----cCCeeECccccccccccccccccCCceEEcCCCCCccCCCEEEEEeec
Confidence            5699999998665     45569999999887654211          111222345677777754

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>PHA00626 hypothetical protein

Probab=91.80  E-value=0.13  Score=35.98  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             CCCcCCCCCCcccccC-CCccceeecCCCCCcccc
Q 023914          105 SFCQWCGGQTKHEVPH-GEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~-~~~~~~~~C~~Cg~~~y~  138 (275)
                      ..||.||+......-. .....+..|++||+.+-.
T Consensus         1 m~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~   35 (59)
T PHA00626          1 MSCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSK   35 (59)
T ss_pred             CCCCCCCCceeeeeceecccCcceEcCCCCCeech
Confidence            3799999975443110 011356899999986643

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=91.23  E-value=0.16  Score=36.46  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      +.+.||.||......    ..+....|+.||+..
T Consensus        27 TSq~C~~CG~~~~~~----~~~r~~~C~~Cg~~~   56 (69)
T PF07282_consen   27 TSQTCPRCGHRNKKR----RSGRVFTCPNCGFEM   56 (69)
T ss_pred             CccCccCcccccccc----cccceEEcCCCCCEE
Confidence            678999999998763    345678999999873

More information about these proteins can be found at Protein of the Month: Transposase [].

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=91.16  E-value=0.11  Score=42.54  Aligned_cols=24  Identities=29%  Similarity=0.780  Sum_probs=19.4

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      .+||.||.|+-..    +|  .-+||.||+
T Consensus        29 ~hCp~Cg~PLF~K----dG--~v~CPvC~~   52 (131)
T COG1645          29 KHCPKCGTPLFRK----DG--EVFCPVCGY   52 (131)
T ss_pred             hhCcccCCcceee----CC--eEECCCCCc
Confidence            6899999998664    33  369999997

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=91.13  E-value=0.82  Score=41.49  Aligned_cols=93  Identities=17%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             eEEEEEeccCCCCCceeeeeEEe-eCCCCHHHHHHHHHHHHhCCccccc----eeeEEEEeCCC---------CEEEEEE
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYM-EIGESAAEGAIRETWEEARADVEVQ----SPFAQLDIPRI---------GQIYIIF  218 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~v-E~GEs~eeAa~REl~EEtGl~v~~~----~~~~~~~~~~~---------~~~~~~f  218 (275)
                      =+||+++..+ ..+.|.||-+-. +.++++...|.|++++-.|=.....    ..++...+..+         +...++|
T Consensus       140 LyLLV~~k~g-~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~  218 (263)
T KOG4548|consen  140 LYLLVKRKFG-KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFF  218 (263)
T ss_pred             EEEEEeeccC-ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEe
Confidence            3778876544 357899999988 9999999999999999988544221    12332111111         2334556


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                      .+.+..+...-.....|..|++.+||..
T Consensus       219 k~~lv~~~~~kn~n~edfvWvTkdel~e  246 (263)
T KOG4548|consen  219 KASLVANSNQKNQNKEDFVWVTKDELGE  246 (263)
T ss_pred             eeeeccccchhcccccceEEechHHHhh
Confidence            6666655433334456799999999984

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=91.11  E-value=0.2  Score=33.40  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      -|+.||+.+...    +......|+.||...
T Consensus         5 ~C~~CG~~~~~~----~~~~~~~Cp~CG~~~   31 (46)
T PRK00398          5 KCARCGREVELD----EYGTGVRCPYCGYRI   31 (46)
T ss_pred             ECCCCCCEEEEC----CCCCceECCCCCCeE
Confidence            599999998665    233368999999744

>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements

Probab=90.48  E-value=0.11  Score=46.96  Aligned_cols=43  Identities=16%  Similarity=0.253  Sum_probs=18.2

Q ss_pred             HHHHH-HhhhhcCCCCcCCCCC-CcccccCCCccceeecCCCCCcc
Q 023914           93 AAVHS-AGNVLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus        93 ~a~~l-~~w~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .|+-| -.|...+.|||.||+. +... .....---..|+.|+..+
T Consensus        19 ~aRVltE~Wv~~n~yCP~Cg~~~L~~f-~NN~PVaDF~C~~C~eey   63 (254)
T PF06044_consen   19 IARVLTEDWVAENMYCPNCGSKPLSKF-ENNRPVADFYCPNCNEEY   63 (254)
T ss_dssp             HHHHHHHHHHHHH---TTT--SS-EE---------EEE-TTT--EE
T ss_pred             hhHHHHHHHHHHCCcCCCCCChhHhhc-cCCCccceeECCCCchHH
Confidence            33333 3699999999999999 4333 221122236899998644

The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=90.06  E-value=0.21  Score=38.97  Aligned_cols=29  Identities=24%  Similarity=0.583  Sum_probs=22.3

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      +|||.||..|...      +....|+.|++.....
T Consensus         1 ~fC~~Cg~~l~~~------~~~~~C~~C~~~~~~~   29 (104)
T TIGR01384         1 KFCPKCGSLMTPK------NGVYVCPSCGYEKEKK   29 (104)
T ss_pred             CCCcccCcccccC------CCeEECcCCCCccccc
Confidence            5999999999543      2368999999876543

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=90.04  E-value=0.14  Score=31.32  Aligned_cols=26  Identities=27%  Similarity=0.673  Sum_probs=14.3

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      .-||.||+.....     ++...+|+.|++.
T Consensus         3 p~Cp~C~se~~y~-----D~~~~vCp~C~~e   28 (30)
T PF08274_consen    3 PKCPLCGSEYTYE-----DGELLVCPECGHE   28 (30)
T ss_dssp             ---TTT-----EE------SSSEEETTTTEE
T ss_pred             CCCCCCCCcceec-----cCCEEeCCccccc
Confidence            4699999998774     5677999999975

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=89.85  E-value=0.22  Score=42.10  Aligned_cols=31  Identities=29%  Similarity=0.657  Sum_probs=18.7

Q ss_pred             CCcCCCCCCccc-----ccCCC-ccceeecCCCCCcc
Q 023914          106 FCQWCGGQTKHE-----VPHGE-EKMRAICTVCGKIA  136 (275)
Q Consensus       106 fC~~CG~~~~~~-----~~~~~-~~~~~~C~~Cg~~~  136 (275)
                      -||.||++-...     +.+|. -..++.|++||+..
T Consensus         2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f   38 (154)
T PRK00464          2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF   38 (154)
T ss_pred             cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence            599999975222     11111 11348999999654

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=89.72  E-value=0.24  Score=32.25  Aligned_cols=31  Identities=23%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      .||+|+..|.....  .+-....|++|+-..+.
T Consensus         1 ~CP~C~~~l~~~~~--~~~~id~C~~C~G~W~d   31 (41)
T PF13453_consen    1 KCPRCGTELEPVRL--GDVEIDVCPSCGGIWFD   31 (41)
T ss_pred             CcCCCCcccceEEE--CCEEEEECCCCCeEEcc
Confidence            59999999877755  34567789999966553

>PRK10220 hypothetical protein; Provisional

Probab=89.50  E-value=0.3  Score=38.75  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=25.6

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP  140 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p  140 (275)
                      ..-||+|++.....     ++....|+.|+++.-+.-
T Consensus         3 lP~CP~C~seytY~-----d~~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          3 LPHCPKCNSEYTYE-----DNGMYICPECAHEWNDAE   34 (111)
T ss_pred             CCcCCCCCCcceEc-----CCCeEECCcccCcCCccc
Confidence            46799999998665     456699999999887754

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.15  E-value=0.26  Score=31.26  Aligned_cols=32  Identities=22%  Similarity=0.468  Sum_probs=21.1

Q ss_pred             CCcCCCCCCccccc-CCCccceeecCCCCCccc
Q 023914          106 FCQWCGGQTKHEVP-HGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       106 fC~~CG~~~~~~~~-~~~~~~~~~C~~Cg~~~y  137 (275)
                      -||+||+....... .++.+....|+.||...+
T Consensus         4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY   36 (38)
T ss_pred             ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence            49999997644310 112344689999998765

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.94  E-value=0.17  Score=30.45  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=12.4

Q ss_pred             CCcCCCCCCcccccCCCccceeecCC
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTV  131 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~  131 (275)
                      +||.||+++...    +++...+|++
T Consensus         1 ~CP~C~s~l~~~----~~ev~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVRE----EGEVDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-----CCTTCEEE--
T ss_pred             CcCCCCCEeEcC----CCCEeEECCC
Confidence            699999999865    5566778864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=88.22  E-value=0.29  Score=38.94  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=21.3

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      +-+-||.||++.---     .+.-.+||.||..+-+.
T Consensus         8 tKR~Cp~CG~kFYDL-----nk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYDL-----NKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhccC-----CCCCccCCCCCCccCcc
Confidence            347889998886433     23345788888776554

The function of members of this family is unknown.

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=87.98  E-value=0.31  Score=39.08  Aligned_cols=21  Identities=38%  Similarity=0.912  Sum_probs=17.9

Q ss_pred             CcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          107 CQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       107 C~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      ||.||+++...        +..|++|+..
T Consensus         1 CPvCg~~l~vt--------~l~C~~C~t~   21 (113)
T PF09862_consen    1 CPVCGGELVVT--------RLKCPSCGTE   21 (113)
T ss_pred             CCCCCCceEEE--------EEEcCCCCCE
Confidence            99999998765        6899999854

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=87.76  E-value=0.35  Score=36.87  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=27.2

Q ss_pred             HHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914           94 AVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus        94 a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      -..+..=.+.---||.||.+...+    .+--.+.|..||+..
T Consensus        25 v~~ie~~~~~~~~Cp~C~~~~VkR----~a~GIW~C~kCg~~f   63 (89)
T COG1997          25 VKEIEAQQRAKHVCPFCGRTTVKR----IATGIWKCRKCGAKF   63 (89)
T ss_pred             HHHHHHHHhcCCcCCCCCCcceee----eccCeEEcCCCCCee
Confidence            344444455566799999997666    334468999999753

>TIGR00244 transcriptional regulator NrdR

Probab=87.76  E-value=0.49  Score=39.64  Aligned_cols=47  Identities=17%  Similarity=0.465  Sum_probs=26.4

Q ss_pred             CCCcCCCCCCcccccC--CCcc----ceeecCCCCCc--cccCCcEEEEEEEeeC
Q 023914          105 SFCQWCGGQTKHEVPH--GEEK----MRAICTVCGKI--AYQNPKMVVGCLIEHD  151 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~--~~~~----~~~~C~~Cg~~--~y~~p~~~V~viI~~~  151 (275)
                      +.||.||+.-......  .++|    .|+.|.+||..  .|-+.-..-..++-++
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErve~~~l~ViKkd   55 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERAELLPPTVIKQD   55 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeeccccccEEEcCC
Confidence            3699999975433211  1222    56899999954  4555444433344433

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]

Probab=87.54  E-value=0.43  Score=41.76  Aligned_cols=95  Identities=20%  Similarity=0.333  Sum_probs=64.9

Q ss_pred             CCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCC
Q 023914           86 TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY  165 (275)
Q Consensus        86 ~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~  165 (275)
                      .+..+-.-|.+|.+-..+.++|+.||.-++..          .|.-|....-   +-.++++|..-.-++...+... ..
T Consensus        36 ~~~~~~~la~al~~a~~~i~~C~~C~~~te~d----------~C~ICsd~~R---d~~~icVVe~p~Dv~a~E~~~~-f~  101 (198)
T COG0353          36 DREDVERLAKALLEAKENIKHCSVCGNLTESD----------PCDICSDESR---DKSQLCVVEEPKDVLALEKTGE-FR  101 (198)
T ss_pred             CHHHHHHHHHHHHHHHhcCccccccCCcCCCC----------cCcCcCCccc---CCceEEEEcchHHHHHHHHhcc-cC
Confidence            33444556777888899999999999886332          5777764433   3335666665555555554433 47


Q ss_pred             CceeeeeEEeeC--CCCHHHHHHHHHHHHhC
Q 023914          166 GLWTLPAGYMEI--GESAAEGAIRETWEEAR  194 (275)
Q Consensus       166 g~w~lPgG~vE~--GEs~eeAa~REl~EEtG  194 (275)
                      |.|.+.+|.+.+  |-.+++--.+++.+-..
T Consensus       102 G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~  132 (198)
T COG0353         102 GLYHVLGGLLSPLDGIGPEDLNIDELLQRLA  132 (198)
T ss_pred             eeEEEecCccCcccCCCcccccHHHHHHHHh
Confidence            999999999985  66777777777777655

>PRK13844 recombination protein RecR; Provisional

Probab=87.44  E-value=0.36  Score=42.51  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=65.2

Q ss_pred             CCCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCC
Q 023914           85 ATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPS  164 (275)
Q Consensus        85 ~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~  164 (275)
                      .++..+-.-|.++.+-..+.++|+.||.-++..          .|+-|....-   +-..++||..-.-++-+.+... .
T Consensus        38 ~~~~~~~~la~~i~~~~~~i~~C~~C~~lte~~----------~C~IC~d~~R---d~~~iCVVE~~~Dv~aiE~t~~-y  103 (200)
T PRK13844         38 KSPETAIAIANSLLDATANIKKCVYCQALTEDD----------VCNICSNTNR---DDTKLCIIESMLDMIAIEEAGI-Y  103 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCC----------CCCCCCCCCC---CCCEEEEECCHHHHHHHHhhCc-c
Confidence            334444566777888889999999999886332          4777764433   3344556665555555555433 4


Q ss_pred             CCceeeeeEEeeC--CCCHHHHHHHHHHHHhC
Q 023914          165 YGLWTLPAGYMEI--GESAAEGAIRETWEEAR  194 (275)
Q Consensus       165 ~g~w~lPgG~vE~--GEs~eeAa~REl~EEtG  194 (275)
                      .|.|.+.+|.+.+  |..+++--..++.+-..
T Consensus       104 ~G~YhVL~G~ispl~gi~p~~l~i~~L~~Ri~  135 (200)
T PRK13844        104 RGKYFVLNGRISPLDGIGPSELKLDILQQIIA  135 (200)
T ss_pred             ceEEEEccCccCccCCCChhhcCHHHHHHHHh
Confidence            8999999999984  77888877777776653

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=87.30  E-value=0.52  Score=39.60  Aligned_cols=45  Identities=18%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             CCCcCCCCCCccccc---CCCc---cceeecCCCCCcc--ccCCcEEEEEEEe
Q 023914          105 SFCQWCGGQTKHEVP---HGEE---KMRAICTVCGKIA--YQNPKMVVGCLIE  149 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~---~~~~---~~~~~C~~Cg~~~--y~~p~~~V~viI~  149 (275)
                      ++||.||+.-.....   ..++   ..|+.|++||..+  |-+.-..-.++|-
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~El~~~~VvK   53 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERAELRPLIVVK   53 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhheeeeccceEEC
Confidence            479999988544321   1111   2578999999644  4443333333443

>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length

Probab=87.28  E-value=0.28  Score=41.12  Aligned_cols=32  Identities=19%  Similarity=0.531  Sum_probs=26.4

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP  140 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p  140 (275)
                      -.|-.||+.+....    .+....||.||...|.|-
T Consensus       113 l~C~~Cg~~~~~~~----~~~l~~Cp~C~~~~F~R~  144 (146)
T PF07295_consen  113 LVCENCGHEVELTH----PERLPPCPKCGHTEFTRQ  144 (146)
T ss_pred             EecccCCCEEEecC----CCcCCCCCCCCCCeeeeC
Confidence            57999999998873    446789999999999764

Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=86.92  E-value=0.47  Score=30.14  Aligned_cols=32  Identities=16%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCcCCCCCCccccc-CCCccceeecCCCCCccc
Q 023914          106 FCQWCGGQTKHEVP-HGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       106 fC~~CG~~~~~~~~-~~~~~~~~~C~~Cg~~~y  137 (275)
                      -||.|++....... ....+....|+.|+++.+
T Consensus         4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~   36 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF   36 (36)
T ss_pred             ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence            49999998654310 124566789999998754

>COG4640 Predicted membrane protein [Function unknown]

Probab=86.71  E-value=0.34  Score=46.55  Aligned_cols=26  Identities=38%  Similarity=0.864  Sum_probs=17.3

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y  137 (275)
                      ++|||.||+.-.      ++  ...|+.||...-
T Consensus         1 M~fC~kcG~qk~------Ed--~~qC~qCG~~~t   26 (465)
T COG4640           1 MKFCPKCGSQKA------ED--DVQCTQCGHKFT   26 (465)
T ss_pred             CCcccccccccc------cc--cccccccCCcCC
Confidence            489999995521      11  234999997543

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=86.59  E-value=0.89  Score=37.24  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             HHHHHHHHhhhhcCCCCcCCCCCCcccc-cCCCccceeecCCCCCcc
Q 023914           91 SSAAVHSAGNVLKISFCQWCGGQTKHEV-PHGEEKMRAICTVCGKIA  136 (275)
Q Consensus        91 ~~~a~~l~~w~~~~~fC~~CG~~~~~~~-~~~~~~~~~~C~~Cg~~~  136 (275)
                      ..-|..-..++....+||.|++...... ....+..+..|++|++..
T Consensus        17 ~~~~~~~~~~~~~~~~cP~C~s~~~~k~g~~~~~~qRyrC~~C~~tf   63 (129)
T COG3677          17 LADAAYAIRMQITKVNCPRCKSSNVVKIGGIRRGHQRYKCKSCGSTF   63 (129)
T ss_pred             HHHHHHHHhhhcccCcCCCCCccceeeECCccccccccccCCcCcce
Confidence            3344445568888999999999982221 112235678999999654

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=86.49  E-value=0.46  Score=31.65  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=19.2

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      -|+.||......     .+....|+.||..
T Consensus         4 ~C~~Cg~~~~~~-----~~~~irC~~CG~r   28 (44)
T smart00659        4 ICGECGRENEIK-----SKDVVRCRECGYR   28 (44)
T ss_pred             ECCCCCCEeecC-----CCCceECCCCCce
Confidence            399999997665     3455799999964

present in RNA polymerase I, II and III

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=86.38  E-value=0.25  Score=47.99  Aligned_cols=37  Identities=30%  Similarity=0.548  Sum_probs=28.7

Q ss_pred             HHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914           95 VHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus        95 ~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      ..|..|...+.-||.||+.|+..   |..  .+.|++||...
T Consensus       341 ~~l~~~~~~~p~Cp~Cg~~m~S~---G~~--g~rC~kCg~~~  377 (421)
T COG1571         341 LKLARYERVNPVCPRCGGRMKSA---GRN--GFRCKKCGTRA  377 (421)
T ss_pred             EEeeeeEEcCCCCCccCCchhhc---CCC--CcccccccccC
Confidence            34556888889999999999876   222  68999999654

>PRK11032 hypothetical protein; Provisional

Probab=86.19  E-value=0.33  Score=41.27  Aligned_cols=32  Identities=19%  Similarity=0.501  Sum_probs=26.7

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP  140 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p  140 (275)
                      .-|-.||..+...    ..+....|+.||...|.|.
T Consensus       125 LvC~~Cg~~~~~~----~p~~i~pCp~C~~~~F~R~  156 (160)
T PRK11032        125 LVCEKCHHHLAFY----TPEVLPLCPKCGHDQFQRR  156 (160)
T ss_pred             EEecCCCCEEEec----CCCcCCCCCCCCCCeeeeC
Confidence            5699999999887    3457789999999999763

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=85.93  E-value=0.35  Score=33.03  Aligned_cols=29  Identities=24%  Similarity=0.583  Sum_probs=21.6

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      -|.+||+..+..    .....-.|+.||+...-
T Consensus         8 ~C~~Cg~~~~~~----~~~~~irCp~Cg~rIl~   36 (49)
T COG1996           8 KCARCGREVELD----QETRGIRCPYCGSRILV   36 (49)
T ss_pred             EhhhcCCeeehh----hccCceeCCCCCcEEEE
Confidence            399999998543    34556789999986654

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.92  E-value=0.49  Score=31.00  Aligned_cols=28  Identities=25%  Similarity=0.566  Sum_probs=17.8

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .||.||+..... .  ...--.+|+.||.+.
T Consensus         2 ~Cp~Cg~~~~~~-D--~~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    2 KCPNCGSKEIVF-D--PERGELVCPNCGLVL   29 (43)
T ss_dssp             SBTTTSSSEEEE-E--TTTTEEEETTT-BBE
T ss_pred             CCcCCcCCceEE-c--CCCCeEECCCCCCEe
Confidence            699999986222 1  122345999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=85.60  E-value=0.47  Score=30.27  Aligned_cols=31  Identities=16%  Similarity=0.362  Sum_probs=21.7

Q ss_pred             CCcCCCCCCccccc-CCCccceeecCCCCCcc
Q 023914          106 FCQWCGGQTKHEVP-HGEEKMRAICTVCGKIA  136 (275)
Q Consensus       106 fC~~CG~~~~~~~~-~~~~~~~~~C~~Cg~~~  136 (275)
                      -||.|++....... -+.++.+..|+.|+.+.
T Consensus         4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence            49999999754411 01356688999999865

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=85.48  E-value=0.42  Score=29.70  Aligned_cols=25  Identities=24%  Similarity=0.605  Sum_probs=17.3

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      -|+.||+.....     .+..-.|+.||+.
T Consensus         2 ~C~~Cg~~~~~~-----~~~~irC~~CG~R   26 (32)
T PF03604_consen    2 ICGECGAEVELK-----PGDPIRCPECGHR   26 (32)
T ss_dssp             BESSSSSSE-BS-----TSSTSSBSSSS-S
T ss_pred             CCCcCCCeeEcC-----CCCcEECCcCCCe
Confidence            389999998754     2345689999964

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=85.40  E-value=1.2  Score=29.55  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=26.6

Q ss_pred             HHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914           92 SAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus        92 ~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      -..+.-..|-.. ..||+||+.-... .  ....++.|.+|++
T Consensus         7 ~~~l~~~RW~~g-~~CP~Cg~~~~~~-~--~~~~~~~C~~C~~   45 (46)
T PF12760_consen    7 REYLEEIRWPDG-FVCPHCGSTKHYR-L--KTRGRYRCKACRK   45 (46)
T ss_pred             HHHHHHhcCCCC-CCCCCCCCeeeEE-e--CCCCeEECCCCCC
Confidence            345566678777 4499999973333 2  2356789999975

It may be a zinc-binding beta ribbon domain that could bind DNA.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=85.34  E-value=0.17  Score=35.86  Aligned_cols=27  Identities=19%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecC-CCCCccc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICT-VCGKIAY  137 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~-~Cg~~~y  137 (275)
                      .|++|+.||++....        ...|. .|+..+.
T Consensus         2 ~HkHC~~CG~~Ip~~--------~~fCS~~C~~~~~   29 (59)
T PF09889_consen    2 PHKHCPVCGKPIPPD--------ESFCSPKCREEYR   29 (59)
T ss_pred             CCCcCCcCCCcCCcc--------hhhhCHHHHHHHH
Confidence            589999999996432        46885 7876543

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=85.19  E-value=0.55  Score=36.60  Aligned_cols=30  Identities=33%  Similarity=0.602  Sum_probs=22.3

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .|||.||.-+...  .|+.-.+..|..|++++
T Consensus         2 ~FCP~Cgn~Live--~g~~~~rf~C~tCpY~~   31 (105)
T KOG2906|consen    2 LFCPTCGNMLIVE--SGESCNRFSCRTCPYVF   31 (105)
T ss_pred             cccCCCCCEEEEe--cCCeEeeEEcCCCCcee
Confidence            6999999998665  22334788999998643

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=85.12  E-value=0.49  Score=41.11  Aligned_cols=29  Identities=17%  Similarity=0.412  Sum_probs=23.1

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      +-.|++||++|...      +....||.||++.-.
T Consensus       149 ~A~CsrC~~~L~~~------~~~l~Cp~Cg~tEkR  177 (188)
T COG1096         149 YARCSRCRAPLVKK------GNMLKCPNCGNTEKR  177 (188)
T ss_pred             EEEccCCCcceEEc------CcEEECCCCCCEEee
Confidence            46899999999764      467899999987543

>TIGR00615 recR recombination protein RecR

Probab=84.93  E-value=0.58  Score=41.04  Aligned_cols=94  Identities=17%  Similarity=0.310  Sum_probs=63.8

Q ss_pred             CccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCC
Q 023914           87 SSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYG  166 (275)
Q Consensus        87 ~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g  166 (275)
                      ......-|.++.+-..+.++|+.||.-++.          -.|+-|....-   +...++||..-.-++-..+... ..|
T Consensus        36 ~~~~~~la~ai~~~~~~i~~C~~C~~lse~----------~~C~IC~d~~R---d~~~iCVVE~~~Dv~aiE~~~~-y~G  101 (195)
T TIGR00615        36 PSEVLRLAQALLEAKENLRTCSVCGAISDQ----------EVCNICSDERR---DNSVICVVEDPKDVFALEKTKE-FRG  101 (195)
T ss_pred             HHHHHHHHHHHHHHHHcCCcCCCCCCCCCC----------CcCCCCCCCCC---CCCEEEEECCHHHHHHHHhhCc-cce
Confidence            334455667778888899999999977532          24777765433   3345566665555555555533 489


Q ss_pred             ceeeeeEEeeC--CCCHHHHHHHHHHHHhC
Q 023914          167 LWTLPAGYMEI--GESAAEGAIRETWEEAR  194 (275)
Q Consensus       167 ~w~lPgG~vE~--GEs~eeAa~REl~EEtG  194 (275)
                      .|.+.+|.+.|  |..+++--..++.+-..
T Consensus       102 ~YhVL~G~iSPldgigp~~l~i~~L~~Ri~  131 (195)
T TIGR00615       102 RYHVLGGHISPLDGIGPEDLTIAALLKRLQ  131 (195)
T ss_pred             EEEEccCccCccCCCChhhcCHHHHHHHHh
Confidence            99999999985  67777777777766653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=84.71  E-value=0.46  Score=33.70  Aligned_cols=26  Identities=27%  Similarity=0.667  Sum_probs=15.1

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCC
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCG  133 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg  133 (275)
                      ...|-.||..+...    +....+.||+||
T Consensus         9 ~~~CtSCg~~i~p~----e~~v~F~CPnCG   34 (61)
T COG2888           9 PPVCTSCGREIAPG----ETAVKFPCPNCG   34 (61)
T ss_pred             CceeccCCCEeccC----CceeEeeCCCCC
Confidence            34566666665443    455566666666

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=84.70  E-value=0.54  Score=48.37  Aligned_cols=35  Identities=31%  Similarity=0.577  Sum_probs=18.6

Q ss_pred             hcCCCCcCCCCCCcc-cccC---CCccceeecCCCCCcc
Q 023914          102 LKISFCQWCGGQTKH-EVPH---GEEKMRAICTVCGKIA  136 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~-~~~~---~~~~~~~~C~~Cg~~~  136 (275)
                      ...+||+.||.++.. .++.   .-....+.|+.||...
T Consensus        13 ~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~   51 (645)
T PRK14559         13 NNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAET   51 (645)
T ss_pred             CCCccccccCCCCCCCcCCCCCCCCCcccccccccCCcc
Confidence            346777777777642 1110   0112346788887643

>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=84.62  E-value=0.81  Score=36.19  Aligned_cols=52  Identities=21%  Similarity=0.365  Sum_probs=35.2

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcE-----------EEEEEEeeCCeEEEEEec
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKM-----------VVGCLIEHDKKILLCKRK  160 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~-----------~V~viI~~~~~iLL~rr~  160 (275)
                      ..-||+|.+.....    + +....|+.|++..-++-..           +.+.++.+++.|.|++--
T Consensus         3 lp~cp~c~sEytYe----d-~~~~~cpec~~ew~~~~~~~~~~~~~~v~DsnGn~L~dGDsV~lIKDL   65 (112)
T COG2824           3 LPPCPKCNSEYTYE----D-GGQLICPECAHEWNENEAAEEADEALIVKDSNGNLLADGDSVTLIKDL   65 (112)
T ss_pred             CCCCCccCCceEEe----c-CceEeCchhccccccccccccccCceEEEcCCCcEeccCCeEEEEEee
Confidence            46799999998775    3 4489999999888755321           122333456777777754

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=84.41  E-value=0.73  Score=32.12  Aligned_cols=30  Identities=33%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y  137 (275)
                      -||.||+.+...-.  ..+....|+.||....
T Consensus         4 ~CP~CG~~iev~~~--~~GeiV~Cp~CGaele   33 (54)
T TIGR01206         4 ECPDCGAEIELENP--ELGELVICDECGAELE   33 (54)
T ss_pred             CCCCCCCEEecCCC--ccCCEEeCCCCCCEEE
Confidence            69999999766422  3366789999997654

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=84.29  E-value=0.55  Score=33.27  Aligned_cols=27  Identities=26%  Similarity=0.739  Sum_probs=15.8

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      ..|..||..+...    +...++.||+||..
T Consensus         8 ~~CtSCg~~i~~~----~~~~~F~CPnCG~~   34 (59)
T PRK14890          8 PKCTSCGIEIAPR----EKAVKFLCPNCGEV   34 (59)
T ss_pred             ccccCCCCcccCC----CccCEeeCCCCCCe
Confidence            3566666665443    33456666666654

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=84.12  E-value=0.67  Score=32.62  Aligned_cols=23  Identities=26%  Similarity=0.696  Sum_probs=17.9

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      ....||.||+.....         ..|+.||+
T Consensus        26 ~l~~C~~CG~~~~~H---------~vC~~CG~   48 (57)
T PRK12286         26 GLVECPNCGEPKLPH---------RVCPSCGY   48 (57)
T ss_pred             cceECCCCCCccCCe---------EECCCCCc
Confidence            346899999996443         68999993

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.93  E-value=0.56  Score=29.94  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=20.0

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      .|+.||+..+......+ +....|+.||.
T Consensus         7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (41)
T smart00834        7 RCEDCGHTFEVLQKISD-DPLATCPECGG   34 (41)
T ss_pred             EcCCCCCEEEEEEecCC-CCCCCCCCCCC
Confidence            69999998765533222 45678999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=83.78  E-value=2.4  Score=39.07  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=19.4

Q ss_pred             eeCCeEEEEEeccCC-CCCceeeee
Q 023914          149 EHDKKILLCKRKIEP-SYGLWTLPA  172 (275)
Q Consensus       149 ~~~~~iLL~rr~~~p-~~g~w~lPg  172 (275)
                      ..++++||.+|.... .+|+|+||.
T Consensus       236 ~~~~~~~~~~r~~~~~~~gl~~~p~  260 (275)
T TIGR01084       236 NYDGEVLLEQRPEKGLWGGLYCFPQ  260 (275)
T ss_pred             eCCCeEEEEeCCCCchhhccccCCC
Confidence            457899999997654 489999996

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=83.76  E-value=0.74  Score=37.60  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=22.2

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      +.+-||.||++.--.     .+...+||.||..+-+
T Consensus         8 tKr~Cp~cg~kFYDL-----nk~p~vcP~cg~~~~~   38 (129)
T TIGR02300         8 TKRICPNTGSKFYDL-----NRRPAVSPYTGEQFPP   38 (129)
T ss_pred             ccccCCCcCcccccc-----CCCCccCCCcCCccCc
Confidence            457899999996443     3455789999988533

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=83.72  E-value=2.5  Score=37.08  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=50.7

Q ss_pred             CCCCcCCCCCCcccccC----CCcc---ceeecCCCCCcccc-------CCcEEEEEEEe--eCCeEEEEEeccCCCCCc
Q 023914          104 ISFCQWCGGQTKHEVPH----GEEK---MRAICTVCGKIAYQ-------NPKMVVGCLIE--HDKKILLCKRKIEPSYGL  167 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~----~~~~---~~~~C~~Cg~~~y~-------~p~~~V~viI~--~~~~iLL~rr~~~p~~g~  167 (275)
                      .--||-||+.+......    .-+.   .-.+|.+||+.+..       .|.- +.+-++  ++-+.+++|..    .|.
T Consensus        14 ~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~DV~~~e~~eP~r-~~lkve~~edL~~~V~RS~----s~~   88 (201)
T COG1779          14 RIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTDVKTLEEREPRR-YTLKVESEEDLSARVVRSK----SAT   88 (201)
T ss_pred             eecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccceeecccCCCeE-EEEEeCCHHHhhhheeecC----Ccc
Confidence            45799999976544211    0111   24689999987653       3322 222232  23467777755    455


Q ss_pred             eeee--eEEeeCCC------CHHHHHHHHHHHHhCC
Q 023914          168 WTLP--AGYMEIGE------SAAEGAIRETWEEARA  195 (275)
Q Consensus       168 w~lP--gG~vE~GE------s~eeAa~REl~EEtGl  195 (275)
                      -.+|  |=.+++|.      |-.|.+.+-+.|++..
T Consensus        89 I~IPELg~~iePG~~s~G~ITtIEGvL~rv~e~l~~  124 (201)
T COG1779          89 IYIPELGLEIEPGPASEGFITTIEGVLERVYEVLET  124 (201)
T ss_pred             EEcccCceEeccccccCceEehHHHHHHHHHHHHHH
Confidence            6666  44455554      4467777778887775

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=83.65  E-value=0.52  Score=30.88  Aligned_cols=28  Identities=25%  Similarity=0.489  Sum_probs=21.6

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      .|..||+..+...+..+ .....|+.||.
T Consensus         7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    7 RCEECGHEFEVLQSISE-DDPVPCPECGS   34 (42)
T ss_pred             EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence            49999988777655544 56789999997

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.54  E-value=0.96  Score=36.63  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=20.6

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .--||+||.---.+   +=-+.+..|.+||..+
T Consensus        21 ~grCP~CGeGrLF~---gFLK~~p~C~aCG~dy   50 (126)
T COG5349          21 RGRCPRCGEGRLFR---GFLKVVPACEACGLDY   50 (126)
T ss_pred             cCCCCCCCCchhhh---hhcccCchhhhccccc
Confidence            35799999873222   2235678999999765

>PF12773 DZR: Double zinc ribbon

Probab=83.53  E-value=0.78  Score=30.73  Aligned_cols=25  Identities=24%  Similarity=0.623  Sum_probs=18.7

Q ss_pred             hhcCCCCcCCCCCCcccccCCCccceeecCCCC
Q 023914          101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCG  133 (275)
Q Consensus       101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg  133 (275)
                      .....+|+.||+.+..        ...+|+.||
T Consensus        26 ~~~~~~C~~Cg~~~~~--------~~~fC~~CG   50 (50)
T PF12773_consen   26 DQSKKICPNCGAENPP--------NAKFCPNCG   50 (50)
T ss_pred             cCCCCCCcCCcCCCcC--------CcCccCccc
Confidence            3456899999998533        357899997

>PRK00076 recR recombination protein RecR; Reviewed

Probab=83.43  E-value=0.73  Score=40.46  Aligned_cols=94  Identities=22%  Similarity=0.349  Sum_probs=63.9

Q ss_pred             CCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCC
Q 023914           86 TSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY  165 (275)
Q Consensus        86 ~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~  165 (275)
                      .+.....-|.++.+-..+.++|+.||.-++.          -.|+-|....-   +...++||..-..++-..+... ..
T Consensus        35 ~~~~~~~la~~i~~~~~~i~~C~~C~~lse~----------~~C~IC~d~~R---d~~~icVVE~~~Dv~aiE~s~~-y~  100 (196)
T PRK00076         35 DREDVLRLAQALEEAKEKIKHCSVCGNLTEQ----------DPCEICSDPRR---DQSLICVVESPADVLAIERTGE-YR  100 (196)
T ss_pred             CHHHHHHHHHHHHHHHHcCCcCCCCCCcCCC----------CcCCCCCCCCC---CCCEEEEECCHHHHHHHHhhCc-Cc
Confidence            3444456677788888899999999988633          25777764433   3445566666555665555533 47


Q ss_pred             CceeeeeEEeeC--CCCHHHHHHHHHHHHh
Q 023914          166 GLWTLPAGYMEI--GESAAEGAIRETWEEA  193 (275)
Q Consensus       166 g~w~lPgG~vE~--GEs~eeAa~REl~EEt  193 (275)
                      |.|.+.+|.+.+  |-.+++--..++.+-.
T Consensus       101 G~YhVL~G~ispl~gi~p~~l~i~~L~~ri  130 (196)
T PRK00076        101 GLYHVLGGLLSPLDGIGPEDLNIDELLERL  130 (196)
T ss_pred             eEEEEecCCcCCCCCCCccccCHHHHHHHH
Confidence            999999999985  6666666666666666

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=82.70  E-value=3.6  Score=39.14  Aligned_cols=92  Identities=17%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             EEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEE-EEE
Q 023914          143 VVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYII-FLA  220 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~-f~a  220 (275)
                      .+.+++..+++++|.+|...+ ..|+|++|....+.  ..     .+...+.|+..   +.++.+...+.+..... |.+
T Consensus       238 ~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~fth~~l~i~~~a  307 (342)
T COG1194         238 AAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFTHFRLTIELRA  307 (342)
T ss_pred             eeEEEEccCcchhhhhCcccCceecccccccccccc--hh-----hhHhhhccccc---ccccceeeeeeEEEEEEEEEe
Confidence            445556778899999988765 48999999854433  22     22223334433   33444444444332222 333


Q ss_pred             EEcCCCCCCCCCceeEEEecCCCCCCCCCCCcH
Q 023914          221 KLKRPHFSPGPESSECRLFALDEIPFDSLAFSS  253 (275)
Q Consensus       221 ~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s  253 (275)
                      ....      .+. +..|++.+++..  ++++.
T Consensus       308 ~~~~------~~~-~~~w~~~~~~~~--~~l~~  331 (342)
T COG1194         308 SASL------VLS-DGRWYNLSDLES--IGLPA  331 (342)
T ss_pred             eccc------CCC-Cceecccccccc--ccccH
Confidence            3222      222 789999999984  44444

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=82.55  E-value=0.94  Score=28.30  Aligned_cols=30  Identities=27%  Similarity=0.649  Sum_probs=22.5

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      +.+-|+.||+.....    ......+|..||.++
T Consensus         2 ~~~~C~~C~~~~i~~----~~~~~~~C~~Cg~~~   31 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVN----KEDDYEVCIFCGSSF   31 (33)
T ss_pred             CceEcCCCCCCeEEE----ecCCeEEcccCCcEe
Confidence            346799999998773    233468999999764

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=82.47  E-value=1.3  Score=30.81  Aligned_cols=33  Identities=18%  Similarity=0.579  Sum_probs=21.6

Q ss_pred             CCCcCCCCCCcccccCCC--ccceeecCCCCCccc
Q 023914          105 SFCQWCGGQTKHEVPHGE--EKMRAICTVCGKIAY  137 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~--~~~~~~C~~Cg~~~y  137 (275)
                      -+||.||.++....-+..  .....+|+.|..+.-
T Consensus         5 i~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl   39 (55)
T PF14205_consen    5 ILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL   39 (55)
T ss_pred             EECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence            589999999855432211  124568999987643

>PRK11827 hypothetical protein; Provisional

Probab=82.42  E-value=1  Score=32.04  Aligned_cols=34  Identities=29%  Similarity=0.568  Sum_probs=24.4

Q ss_pred             hhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      ....--||.|.+++...    .+....+|..|+ ..||-
T Consensus         5 LLeILaCP~ckg~L~~~----~~~~~Lic~~~~-laYPI   38 (60)
T PRK11827          5 LLEIIACPVCNGKLWYN----QEKQELICKLDN-LAFPL   38 (60)
T ss_pred             HHhheECCCCCCcCeEc----CCCCeEECCccC-eeccc
Confidence            33446799999999765    345568999997 55653

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=82.39  E-value=1.3  Score=30.46  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=18.4

Q ss_pred             CCCcCCCCCCcccc---cCCCccceeecCCCCCc
Q 023914          105 SFCQWCGGQTKHEV---PHGEEKMRAICTVCGKI  135 (275)
Q Consensus       105 ~fC~~CG~~~~~~~---~~~~~~~~~~C~~Cg~~  135 (275)
                      +=||.||+.-....   ...+......|..||..
T Consensus         2 kPCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~   35 (53)
T TIGR03655         2 KPCPFCGGADVYLRRGFDPLDLSHYFECSTCGAS   35 (53)
T ss_pred             CCCCCCCCcceeeEeccCCCCCEEEEECCCCCCC
Confidence            45999999876321   11112223369999865

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=82.37  E-value=3.6  Score=38.45  Aligned_cols=79  Identities=23%  Similarity=0.201  Sum_probs=50.1

Q ss_pred             eeeeeEEeeCCCCHHHHHHHHHHHHhCCccc--cceeeEEEEe--CCCCEEEEEEEEEEcCCC-------CCCCCCceeE
Q 023914          168 WTLPAGYMEIGESAAEGAIRETWEEARADVE--VQSPFAQLDI--PRIGQIYIIFLAKLKRPH-------FSPGPESSEC  236 (275)
Q Consensus       168 w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~--~~~~~~~~~~--~~~~~~~~~f~a~~~~~e-------~~~~~E~~d~  236 (275)
                      .++-+|.|+..-+.++-+.||..||.|.++.  .++.+..+--  ...+....-|++++.+.+       ....+|..+.
T Consensus       286 lELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEv  365 (405)
T KOG4432|consen  286 LELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEV  365 (405)
T ss_pred             eeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeE
Confidence            5677888888889999999999999999873  3444444321  111122222556655432       2223566777


Q ss_pred             EEecCCCCCC
Q 023914          237 RLFALDEIPF  246 (275)
Q Consensus       237 ~W~~~deL~~  246 (275)
                      .-+++++++.
T Consensus       366 v~lsle~a~~  375 (405)
T KOG4432|consen  366 VRLSLEDAPS  375 (405)
T ss_pred             EEechhhhhH
Confidence            7788888764

>PF14353 CpXC: CpXC protein

Probab=81.84  E-value=2.1  Score=34.43  Aligned_cols=50  Identities=20%  Similarity=0.383  Sum_probs=29.4

Q ss_pred             CCcCCCCCCccccc---C------------CCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEE
Q 023914          106 FCQWCGGQTKHEVP---H------------GEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCK  158 (275)
Q Consensus       106 fC~~CG~~~~~~~~---~------------~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~r  158 (275)
                      -||.||++......   .            ...-....||+||.........   ..++.+.++++.-
T Consensus         3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~---lY~D~~~~~~i~~   67 (128)
T PF14353_consen    3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPL---LYHDPEKKFMIYY   67 (128)
T ss_pred             CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCE---EEEcCCCCEEEEE
Confidence            59999998753311   0            0112468999999887654322   2345555555543

>TIGR01031 rpmF_bact ribosomal protein L32

Probab=81.67  E-value=0.87  Score=31.78  Aligned_cols=22  Identities=27%  Similarity=0.768  Sum_probs=17.1

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      ...||.||+.....         .+|+.||+
T Consensus        26 l~~C~~cG~~~~~H---------~vc~~cG~   47 (55)
T TIGR01031        26 LVVCPNCGEFKLPH---------RVCPSCGY   47 (55)
T ss_pred             ceECCCCCCcccCe---------eECCccCe
Confidence            46799999985443         68999993

This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.

>PF01599 Ribosomal_S27: Ribosomal protein S27a; InterPro: IPR002906 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=81.67  E-value=0.73  Score=31.20  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             hcCCCCc--CCCCCCcccccCCCccceeecCCCCC
Q 023914          102 LKISFCQ--WCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       102 ~~~~fC~--~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      +..+.||  .||...-+.    +-..|..|..||.
T Consensus        16 r~rk~CP~~~CG~GvFMA----~H~dR~~CGKCg~   46 (47)
T PF01599_consen   16 RLRKECPSPRCGAGVFMA----EHKDRHYCGKCGY   46 (47)
T ss_dssp             ESSEE-TSTTTTSSSEEE----E-SSEEEETTTSS
T ss_pred             EhhhcCCCcccCCceEee----ecCCCccCCCccc
Confidence            4578999  999987555    3346899999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesized as a C-terminal extension of ubiquitin (CEP) (IPR000626 from INTERPRO). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis []. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2K4X_A 3U5C_f 3U5G_f 2XZN_9 2XZM_9.

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=81.11  E-value=0.82  Score=38.98  Aligned_cols=39  Identities=23%  Similarity=0.471  Sum_probs=25.3

Q ss_pred             hhhc-CCCCcCCCCCCcccccC-----------CCccceeecCCCCCcccc
Q 023914          100 NVLK-ISFCQWCGGQTKHEVPH-----------GEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       100 w~~~-~~fC~~CG~~~~~~~~~-----------~~~~~~~~C~~Cg~~~y~  138 (275)
                      |... +.-||.|++++....-+           .....-..|+.||.++|+
T Consensus        92 ~~~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~  142 (165)
T COG1656          92 RLFPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWK  142 (165)
T ss_pred             hcccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccC
Confidence            4444 78899999998654110           001113569999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
3cng_A	189	Crystal Structure Of Nudix Hydrolase From Nitrosomo		1e-35
3o8s_A	206	Crystal Structure Of An Adp-Ribose Pyrophosphatase		2e-11
3q4i_A	205	Crystal Structure Of Cdp-Chase In Complex With Gd3+		3e-06
3q1p_A	205	Crystal Structure Of Cdp-Chase Length = 205		3e-06
2fml_A	273	Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM		1e-05
2qjt_B	352	Crystal Structure Of A Bifunctional Nmn Adenylyltra		1e-05
3dku_A	153	Crystal Structure Of Nudix Hydrolase Orf153, Ymfb,		9e-05
3fk9_A	188	Crystal Structure Of Mmutator Mutt Protein From Bac		2e-04
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		3e-04
3i7u_A	134	Crystal Structure Of Ap4a Hydrolase (Aq_158) From A		4e-04
3smd_A	153	Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM		5e-04
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		6e-04

>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas Europaea Length = 189

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 95/155 (61%)
Query: 105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPS 164
            FC  CGG+    +P G+   R IC  C  I YQNPK++VGC+ E + K+LLCKR I P 
Sbjct: 4   KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPY 63
Query: 165 YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKR 224
            G WTLPAG+ E  E+  +GA RET EEA A VE++  +A   +P I Q+Y +F AKL  
Sbjct: 64  RGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYXLFRAKLLD 123
Query: 225 PHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259
             F PG ES E RLF   EIP++ +AF  I   L+
Sbjct: 124 LDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLK 158

>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase (Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A Resolution Length = 206

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 15/123 (12%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
           C +  YQ PK+     I  + KILL    ++ + GLW+LP G+ ++ +S  +  ++E  E
Sbjct: 61  CNETGYQTPKLDTRAAIFQEDKILL----VQENDGLWSLPGGWCDVDQSVKDNVVKEVKE 116
Query: 192 EARADVEVQSPFAQLD---------IPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALD 242
           EA  DVE Q   A LD           R+ +++I  L +L    F P  E+     F+LD
Sbjct: 117 EAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFI--LCRLLGGEFQPNSETVASGFFSLD 174
Query: 243 EIP 245
           ++P
Sbjct: 175 DLP 177

>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+ Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
             +  YQ PK+ +  ++  ++K+L  K K   S G W LP G+ ++G +  E A +E +E
Sbjct: 59  ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFE 115
Query: 192 EARADVEVQSPFAQLDI------PRIGQIYIIFLA-KLKRPHFSPGPESSECRLFALDEI 244
           E   +V+     A  D       P    +Y IF+  ++         E+ E   F  +E+
Sbjct: 116 ETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175
Query: 245 PFDSLA 250
           P  S+A
Sbjct: 176 PNLSIA 181

>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
             +  YQ PK+ +  ++  ++K+L  K K   S G W LP G+ ++G +  E A +E +E
Sbjct: 59  ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFE 115
Query: 192 EARADVEVQSPFAQLDI------PRIGQIYIIFLA-KLKRPHFSPGPESSECRLFALDEI 244
           E   +V+     A  D       P    +Y IF+  ++         E+ E   F  +E+
Sbjct: 116 ETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENEL 175
Query: 245 PFDSLA 250
           P  S+A
Sbjct: 176 PNLSIA 181

>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM ENTEROCOCCUS Faecalis Length = 273

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 137 YQNPKMVVGCLI-----EHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETW 190
           Y+ P + V  ++     E D+ K+LL +RK  P    W LP G++   ES  +  +RET 
Sbjct: 35  YEKPSLTVDXVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETK 94
Query: 191 EE-----ARADVEVQSPFAQLD-IPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEI 244
           EE     ++ ++E    F++ D  PR   + + +LA +       G ++ E   F L+  
Sbjct: 95  EETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERH 154
Query: 245 -PFDSLAFSSISVTLQL 260
               +L+   + +TL L
Sbjct: 155 GQHITLSHEDVEITLDL 171

>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED With Amp And Mn Ion From Francisella Tularensis Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
           + V  L+  +  IL+ +RK  P   LW LP G++E  E+ A+  IRE +EE   ++
Sbjct: 209 VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINL 264

>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1 Length = 153

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
            P + V C++  + K L+ +  I     LW  PAG++E  E+  E A RE WEE     +
Sbjct: 3   KPHVTVACVVHAEGKFLVVEETIN-GKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 199 VQ 200
            Q
Sbjct: 62  PQ 63

>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus Halodurans Length = 188

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 143 VVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           V  C++ +HD+ +LL K    P  G W  P G ME GES  E   RE WEE    + V++
Sbjct: 6   VTNCIVVDHDQVLLLQK----PRRGWWVAPGGKMEAGESILETVKREYWEE--TGITVKN 59
Query: 202 P 202
           P
Sbjct: 60  P 60

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
           G +    +++LL + ++    G W  P G+ E GES  E A+RE WEE     EV  P 
Sbjct: 7   GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61

>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex Aeolicus Vf5 Length = 134

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA 204
           G ++  D ++LL K    PS  +W+ P G +E GE   E A+RE WEE     E+     
Sbjct: 8   GGVLFKDGEVLLIKT---PS-NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIG 63
Query: 205 Q------LDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDE 243
           +      L   RI +    +L K K     P  E  + + F + E
Sbjct: 64  EIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKE 108

>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM BACILLUS Thuringiensis Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           V  +I++++  LL +    P    W+LPAG +E GE+  E  IRE WEE    V+V+
Sbjct: 24  VAAVIKNEQGELLFQY---PGGEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVK 77

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
           G +    +++LL + ++    G W  P G+ E GES  E A+RE WE+     EV  P 
Sbjct: 7   GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPL 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	2e-68
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	5e-53
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	4e-52
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	6e-40
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-36
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	4e-36
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-30
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-29
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-28
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	4e-28
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	8e-23
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	2e-22
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	6e-21
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	2e-20
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	1e-19
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	2e-19
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	7e-19
3f13_A	163	Putative nudix hydrolase family member; structural	8e-19
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	3e-18
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	4e-18
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-18
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-17
3exq_A	161	Nudix family hydrolase; protein structure initiati	1e-17
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	2e-17
2b06_A	155	MUTT/nudix family protein; structural genomics, P	4e-17
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	3e-16
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	4e-16
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	6e-16
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	2e-15
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-14
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-14
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	7e-14
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	1e-13
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	2e-13
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	4e-13
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	7e-12
2fb1_A	226	Conserved hypothetical protein; structural genomic	8e-12
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	1e-10
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	2e-10
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-10
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	3e-10
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	3e-10
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	4e-10
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	6e-10
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	1e-09
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	2e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	7e-09
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-05
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	1e-05
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	1e-05
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	7e-05
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	1e-04
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	2e-04
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	6e-04
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	8e-04
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	8e-04

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score =  209 bits (533), Expect = 2e-68
 Identities = 77/161 (47%), Positives = 99/161 (61%), Gaps = 3/161 (1%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165
           FC  CGG+    +P G+   R IC  C  I YQNPK++VGC+ E + K+LLCKR I P  
Sbjct: 5   FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYR 64

Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRP 225
           G WTLPAG+ME  E+  +GA RET EEA A VE++  +A   +P I Q+Y++F AKL   
Sbjct: 65  GKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRAKLLDL 124

Query: 226 HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE 266
            F PG ES E RLF   EIP++ +AF  I   L   + Y E
Sbjct: 125 DFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPL---KRYME 162

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score =  170 bits (432), Expect = 5e-53
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 104 ISFCQWCG--GQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKI 161
           +   +            P G+         C +  YQ PK+     I  + KILL +   
Sbjct: 31  MERFEEIRQIAAEMLVEPSGQPLEVVKDLFCNETGYQTPKLDTRAAIFQEDKILLVQEN- 89

Query: 162 EPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQ-------I 214
               GLW+LP G+ ++ +S  +  ++E  EEA  DVE Q   A LD  +           
Sbjct: 90  ---DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVT 146

Query: 215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM 268
            +  L +L    F P  E+     F+LD++P   L  +    T + +    E  
Sbjct: 147 KVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKN----TAEQLALCLEAS 196

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score =  168 bits (427), Expect = 4e-52
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 126 RAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGA 185
                   +  YQ PK+ +  ++  ++K+L  K     S G W LP G+ ++G +  E A
Sbjct: 53  VVEKLFASETGYQTPKVDIRAVVFQNEKLLFVKE---KSDGKWALPGGWADVGYTPTEVA 109

Query: 186 IRETWEEARADVEVQSPFAQLDIPR------IGQIYII-FLAKLKRPHFSPGPESSECRL 238
            +E +EE   +V+     A  D  +         +Y I    ++         E+ E   
Sbjct: 110 AKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEF 169

Query: 239 FALDEIPFDSLAFSSISVTLQLVRFY 264
           F  +E+P  S+A ++     ++  + 
Sbjct: 170 FGENELPNLSIARNTEDQIKEMFAYM 195

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score =  134 bits (340), Expect = 6e-40
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query: 135 IAYQNPKMVVGCLI-----EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRET 189
              + P +    +I     E+ K I+L +RK  P      LP G++E+GE   E A RE 
Sbjct: 3   FNVKTPLLATDVIIRLWDGENFKGIVLIERKYPP--VGLALPGGFVEVGERVEEAAAREM 60

Query: 190 WEEARADVEVQSPFAQLDIP----RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
            EE   +V +         P    R   + ++++    +     G ++ + +++ L+EIP
Sbjct: 61  REETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIP 119

Query: 246 FDSLAFSSISVTLQLVRFYFE 266
            D L F       +++  + +
Sbjct: 120 LDKLVFD----HKKIILDFLK 136

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score =  126 bits (319), Expect = 1e-36
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
           V+   +    ++LL +       G W LPAG ME GE+  E   RE  EEA    E ++ 
Sbjct: 23  VLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETL 82

Query: 203 FAQLDIPRIGQIYIIFLAKLK----RPHFSPGPESSECRLFALDEIPFDSLAFSSISVTL 258
            +  +      +  +FLA+      +       ES +   +    +P   L    I   +
Sbjct: 83  LSVEERGP-SWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLP-TPLRAHDILHLV 140

Query: 259 QLVRFYFE 266
           +L   Y +
Sbjct: 141 ELAAQYRQ 148

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score =  126 bits (317), Expect = 4e-36
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 9/150 (6%)

Query: 122 EEKMRAICTVCGKIAYQNPKMV-VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGES 180
            E          ++  +N   V V  ++  D+K+LL K+K+      W+LP G +E GE+
Sbjct: 3   LEGFICKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVAN--RDWSLPGGRVENGET 60

Query: 181 AAEGAIRETWEEARADVEVQSPFAQLDIPRIGQ--IYIIFLAKLKRPHFS-PGPESSECR 237
             E  IRE  EE   +V+++      D P      ++I FL +      + P  E     
Sbjct: 61  LEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNP 120

Query: 238 LFALDEIPFDSLAFSSISVTLQLVRFYFEH 267
           +  +  +P + L++   S T          
Sbjct: 121 IHDVQMVPINELSYYGFSETF---INLISG 147

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score =  110 bits (278), Expect = 2e-30
 Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 8/154 (5%)

Query: 116 HEVPHGEEKMRAICTVCGKIA-YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGY 174
           H   H    + A     G +   + P++  G  I  D +ILL KRK  P  G W LP G 
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGK 62

Query: 175 MEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQ----IYIIFLAKLKR--PHFS 228
           ++  E       RE  EE    +E  +    +D          +  ++LA      P   
Sbjct: 63  VDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEPRVV 122

Query: 229 PGPESSECRLFALDEIPFDSLAFSSISVTLQLVR 262
                     FALD++P   L  ++     Q+ R
Sbjct: 123 EPDRHEALGWFALDDLPQP-LTHATRIALEQVTR 155

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score =  108 bits (270), Expect = 2e-29
 Identities = 30/134 (22%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           P + V  +IE D K LL +     +      PAG++E GES  +   RE  EE       
Sbjct: 7   PNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 66

Query: 200 QSP--FAQLDIPRIGQIYIIFL----AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS 253
           +             G  Y+ F          P             F++DEI        +
Sbjct: 67  EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRT 126

Query: 254 ISVTLQLVRFYFEH 267
             V +Q +  Y   
Sbjct: 127 PLV-MQCIEDYHAG 139

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score =  104 bits (261), Expect = 4e-28
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           P + V C++  + K L+ +  I     LW  PAG++E  E+  E A RE WEE     + 
Sbjct: 4   PHVTVACVVHAEGKFLVVEETINGK-ALWNQPAGHLEADETLVEAAARELWEETGISAQP 62

Query: 200 QSPFAQLDIP---RIGQIYIIFLAKLKR--PHFSPGPESSECRLFALDEIPFDSLAFSSI 254
           Q            +   +  +F  +L++  P      +   CR  + +EI   S   S +
Sbjct: 63  QHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPL 122

Query: 255 SVTLQLVRFYFEH 267
               + +R Y   
Sbjct: 123 --VAESIRCYQSG 133

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score =  105 bits (264), Expect = 4e-28
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           + V  C++    ++LL ++   P  G W  P G ME GES  E   RE WEE    V+  
Sbjct: 4   QRVTNCIVVDHDQVLLLQK---PRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNP 60

Query: 201 SPFAQLDIP-----RIGQIYIIFLAKLKRPHFSPGPESSECRL--FALDEIPFDSLA 250
                  +      +I   +++F  K          +S E +L     DE+    +A
Sbjct: 61  ELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMA 117

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 91.9 bits (228), Expect = 8e-23
 Identities = 24/141 (17%), Positives = 47/141 (33%), Gaps = 8/141 (5%)

Query: 135 IAYQNPKM-VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
               + ++ V G + +   + +L  +       +W  P G  E  E   + A+RE +EE 
Sbjct: 20  FQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEET 79

Query: 194 RADVEVQSPFAQLDIPR------IGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEIPF 246
               E +S  +               +YII   K      +    E   C    L+++  
Sbjct: 80  GIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK 139

Query: 247 DSLAFSSISVTLQLVRFYFEH 267
                   S   +L+ + +  
Sbjct: 140 TENTTPITSRVARLLLYGYRE 160

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 119 PHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIG 178
            H       +      +     ++    L+   +++LL  +K     G W    G ++ G
Sbjct: 5   HHHHHHSSGLVPRGSHMGA--SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEG 62

Query: 179 ESAAEGAIRETWEEARADVEVQSPFAQL--DIPRIGQIYII--FLAKLKRPHFSPGPESS 234
           E+  +GA RE  EE+   V+      Q+  +     ++  +  F            P  S
Sbjct: 63  ETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTD----SIQGTPVES 118

Query: 235 E---CRLFALDEIPFDSLA 250
           +      F LD+IPF  + 
Sbjct: 119 DEMRPCWFQLDQIPFKDMW 137

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 82.5 bits (204), Expect = 1e-19
 Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY----GLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
               L+     ILL + K  P +    GLW +P+G +E GE+  + A+RE  EE    V 
Sbjct: 16  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 75

Query: 199 VQSPFAQLDIPR---IGQIYIIFLAKLKRPHF---SPGPESSECRLFALDEIP 245
                          +  +  ++LA+ +       +   E +E    + ++  
Sbjct: 76  PVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA 128

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 85.4 bits (211), Expect = 2e-19
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%)

Query: 108 QWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGL 167
            +   +    +    + ++A         Y    +    ++     +L+ +R+ +P  GL
Sbjct: 170 TFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGL 229

Query: 168 WTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD----------IPRIGQIYII 217
             LP G+++  E+  EG +RE  EE R  V +      +             R   I   
Sbjct: 230 IALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHA 289

Query: 218 FLAKLKR---PHFSPGPESSECRLFALDEIPF--DSLAF 251
           +  +L     P    G ++ +    +L ++    + +  
Sbjct: 290 YFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYE 328

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 81.0 bits (200), Expect = 7e-19
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 27/155 (17%)

Query: 136 AYQNPKMV-VGCLI--------EHDKKILLCKRKIEP-------SYGLWTLPAGYMEIGE 179
            ++ P       ++        +    ILL KR +           G W +P G+++  E
Sbjct: 21  EFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENE 80

Query: 180 SAAEGAIRETWEEARADVEVQSPFAQLDIPR-------IGQIYIIFLAKLKRPHFSPGPE 232
           SA + A RE  EE         PF   D P        I + +   +        + G +
Sbjct: 81  SAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDD 140

Query: 233 SSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH 267
           ++E  LF + E     LAF      L +++  F  
Sbjct: 141 AAEIGLFPMTEALELPLAFD----HLDMLKKAFSA 171

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 80.3 bits (198), Expect = 8e-19
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
                  +IE    +L+   +     G + LP G    GE  ++  IRE  EE    +  
Sbjct: 15  LARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIREETGLRINS 70

Query: 200 QSPFAQLDIPRIGQIYIIFLAKLK-RPHFSPGPESSECRLFALDEIPFD 247
                    P     + ++L   + +P   P  E     L +  +   D
Sbjct: 71  MLYLFDHITPF--NAHKVYLCIAQGQPK--PQNEIERIALVSSPDTDMD 115

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 78.4 bits (193), Expect = 3e-18
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 21/147 (14%)

Query: 134 KIAYQNPKMVVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
            +    P + +  ++E+ + + LL KR   P+ G W +P G ++  E+      R T  E
Sbjct: 11  TVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAE 70

Query: 193 ARADVEVQSP--------FAQLDIPRIGQ----IYIIFLAKLKRPHFSPGP-ESSECRLF 239
               + + +         F   +          + + F  ++          +  + R  
Sbjct: 71  LGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWL 130

Query: 240 ALDEIPFDSLAFSSISVTLQLVRFYFE 266
             D +       ++        R YF 
Sbjct: 131 TSDALLASDNVHAN-------SRAYFL 150

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 78.4 bits (193), Expect = 4e-18
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 18/118 (15%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
           V   ++  + K+LL K       G++  P G++E  E+  E   RE  EE    VE    
Sbjct: 3   VTSGVLVENGKVLLVKH---KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGF 59

Query: 203 FAQL------DIPRIGQIYIIFLAKLKRPHF---------SPGPESSECRLFALDEIP 245
              +      + P    I    +   +  H            G +        + EI 
Sbjct: 60  TYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 77.4 bits (191), Expect = 6e-18
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 140 PKMVVGCLIEHDK-KILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD 196
             + V  LI ++K + LL +R      + G W LP G +   ES  EG  RE WEE    
Sbjct: 7   YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGIT 66

Query: 197 VEVQSPFAQL--DIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
           +       Q+  ++     I I+F             E  E    +L++I 
Sbjct: 67  MVPGDIAGQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKIL 117

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 14/121 (11%)

Query: 134 KIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
           K+      +    LI  + K+L+ K K     G +    G +++ ES  +  +RE  EE 
Sbjct: 12  KVDNTVFGVRATALIVQNHKLLVTKDK-----GKYYTIGGAIQVNESTEDAVVREVKEEL 66

Query: 194 RADVEVQSP------FAQLDIPRIGQIYIIFLAKL---KRPHFSPGPESSECRLFALDEI 244
               +            ++D      I   +L  L            +   C    LD++
Sbjct: 67  GVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKL 126

Query: 245 P 245
            
Sbjct: 127 Q 127

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 138 QNPKMVVGCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARA 195
           Q  ++V   ++   +  ++L+  +   P     + P G++E+GE  A  AIRE +EE   
Sbjct: 7   QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66

Query: 196 DVEVQSPFAQLDIP----RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAF 251
            +   +     +      +  ++ +++ A           E  +     +  +  ++ A 
Sbjct: 67  RLSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASAE-GQLSWLPITALTRENSAA 125

Query: 252 S 252
           S
Sbjct: 126 S 126

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 17/197 (8%)

Query: 72  SRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTV 131
               AT                  +           ++   Q   ++      +     +
Sbjct: 139 KNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRL 198

Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
             K  ++   + V  L+  +  IL+ +RK  P   LW LP G++E  E+ A+  IRE +E
Sbjct: 199 WLKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFE 258

Query: 192 EARADVEVQSPFAQLDI----------PRIGQIYIIFLAKLK----RPHFSPGPESSECR 237
           E   ++  +                   R   I  + L         P  +   ++ + +
Sbjct: 259 ETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVK 318

Query: 238 LFALDEIP---FDSLAF 251
             +L        D +  
Sbjct: 319 WISLGSNIKNICDRMLE 335

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 13/124 (10%)

Query: 138 QNPKMVVGCLIEHDK--KILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEAR 194
           Q   +   CLIE  +  ++++  R  E + +  +  P G++E  E+ AE  IRE +EE  
Sbjct: 5   QLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETG 64

Query: 195 ADVEVQSPFAQLDIP---RIGQIYIIFLAKLKRPHFSPGPESSEC---RLFALDEIPFDS 248
             ++        + P       I I + A      FS   +SSE         D+IP  +
Sbjct: 65  LTIQNPQLVGIKNWPLDTGGRYIVICYKAT----EFSGTLQSSEEGEVSWVQKDQIPNLN 120

Query: 249 LAFS 252
           LA+ 
Sbjct: 121 LAYD 124

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF 203
            G ++ + K+ +L  R      G W  P G+ E GES  E A+RE WEE     EV  P 
Sbjct: 5   AGGVVFNAKREVLLLR---DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61

Query: 204 AQLDIP---RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQL 260
                     + +    FL + +          +    F+ +E     LAF      L L
Sbjct: 62  YPTRYVNPKGVEREVHWFLMRGE-GAPRLEEGMTGAGWFSPEEAR-ALLAFPED---LGL 116

Query: 261 VRFYFEHMTL 270
           +    E + L
Sbjct: 117 LEVALERLPL 126

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 73.0 bits (179), Expect = 4e-16
 Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSY--GLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
            + +V  LI++D   LLCK         G W L  G +E GE   E   RE  EE    +
Sbjct: 27  QRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 86

Query: 198 EVQS--PFAQLDIPRIGQ-----------IYIIFLAKLKRPHFSPGPESSECRLFALDEI 244
            +    P+   D  RI             IY+IF             E  +      +E+
Sbjct: 87  ILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEEL 146

Query: 245 P 245
            
Sbjct: 147 A 147

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 72.2 bits (177), Expect = 6e-16
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 143 VVGCLI--EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
           V G  I  E+  KILL +         W+ P G +   E+  +  IRE  EE   D+   
Sbjct: 6   VRGAAIFNENLSKILLVQG---TESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDY 62

Query: 201 -SPFAQLDIPRIGQIYIIFLAKLKRPHFSPGP----ESSECRLFALDEIP 245
                 ++    G+ Y IFL       F+  P    E  +   F   +I 
Sbjct: 63  IDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKIS 112

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 24/169 (14%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSY 165
           +C +CG +        E  M   C+ C +  Y      +   I  D  ILL +       
Sbjct: 109 YCGYCGHEMYPS--KTEWAML--CSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHR-N 163

Query: 166 GLWTLPAGYMEIGESAAEGAIRETWEEARADVE----VQS---PFAQLDIPRIGQIYIIF 218
           G+ T+ AG++E+GE+  +   RE  EE+   V+    V S   PF     P+   +   F
Sbjct: 164 GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-----PQ--SLMTAF 216

Query: 219 LAKLKRPHFSP-GPESSECRLFALDEIPF----DSLAFSSISVTLQLVR 262
           +A+           E  E   +  D++P      ++A   I  T+ + R
Sbjct: 217 MAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCR 265

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 136 AYQNPKMVVGCLI--EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
            Y+    V G ++     ++ +L K     +   W  P G ++  ES  + AIRE +EE 
Sbjct: 96  RYKTRIPVRGAIMLDMSMQQCVLVKGW--KASSGWGFPKGKIDKDESDVDCAIREVYEET 153

Query: 194 RADVE-VQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGP----ESSECRLFALDEIP 245
             D     +P   +D+   GQ   +++                E S+     L ++P
Sbjct: 154 GFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLP 210

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 137 YQNPKMVVGCLI------EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETW 190
           Y+ P + V  ++          K+LL +RK  P    W LP G++   ES  +  +RET 
Sbjct: 35  YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETK 94

Query: 191 EEARADVEVQSPFAQLDI-------PRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDE 243
           EE    +  ++   QL         PR   + + +LA +       G ++ E   F L+ 
Sbjct: 95  EETGVVISQENIE-QLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLER 153

Query: 244 IP 245
             
Sbjct: 154 HG 155

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 66.3 bits (162), Expect = 7e-14
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 134 KIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
            + YQ        + + +   ++  +      G + LP G +E  E+  E   RE  EE 
Sbjct: 12  TLTYQTRYAAYIIVSKPENNTMVLVQA---PNGAYFLPGGEIEGTETKEEAIHREVLEEL 68

Query: 194 RADVEVQSP--------FAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
              VE+           ++             ++A   R    P   ++     A +E  
Sbjct: 69  GISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAV 128

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 137 YQNPKMVVGCLI---EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
               K    CL    E ++++LL      P    W +P G ME  E  +  A+RE  EEA
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVSSSRHP--DRWIVPGGGMEPEEEPSVAAVREVCEEA 93

Query: 194 RADVEVQSP---FAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
                +      F   +      +Y++ + ++            +   F +++  
Sbjct: 94  GVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAI 148

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWE 191
           CG I ++  + ++  +  +  + LL +         WT P G++E GE   E A+R T E
Sbjct: 11  CGLIIFR--RCLIPKVDNNAIEFLLLQAS--DGIHHWTPPKGHVEPGEDDLETALRATQE 66

Query: 192 EARADVEVQSPFAQLDIP------RIGQIYIIFLAKLKRPH--FSPGPESSECRLFALDE 243
           EA  +    +                 +  I +LA++K          E    R   L+E
Sbjct: 67  EAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEE 126

Query: 244 IP 245
             
Sbjct: 127 AC 128

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 64.6 bits (157), Expect = 4e-13
 Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 27/128 (21%)

Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
             V   I    K+LL   K            G++E+ E   E  IRE  EEA  +V + +
Sbjct: 7   FTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYN 63

Query: 202 PFA-------QLDIPRIGQIYIIFLAKLKRP---HFS--------------PGPESSECR 237
           P          L   ++    I  +     P   H                   ES   +
Sbjct: 64  PIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILK 123

Query: 238 LFALDEIP 245
            ++ +++ 
Sbjct: 124 WYSKEDLK 131

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           VV  +IE D KILL +R  +    GLW    G +E  ES  +  +RE  EE   +  V  
Sbjct: 11  VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70

Query: 202 PFAQLD 207
             A   
Sbjct: 71  YVASHQ 76

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 62.3 bits (151), Expect = 8e-12
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 137 YQNPKMVVGCLI----EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
                + + C+I    E +  +LL KR  EP+ G W+L  G+++  ES  + A R   E 
Sbjct: 9   NPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 68

Query: 193 ARADVEVQSPFAQL-DIPRIGQ---IYIIFLAKLKR-PHFSPGPESSECRLFALDEIPFD 247
              +            I R      + I + A +    +     +        ++E+P  
Sbjct: 69  TGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPAL 128

Query: 248 SLAFSSI 254
                 +
Sbjct: 129 IFDHPEM 135

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           VV   +  D KIL+ +R    S  G W  P G +E GE+  E   RE  EE   + EV  
Sbjct: 24  VVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGE 83

Query: 202 PFAQLD 207
                 
Sbjct: 84  LKLACT 89

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 18/123 (14%), Positives = 30/123 (24%), Gaps = 22/123 (17%)

Query: 142 MVVGCLI--EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           +        +   K L+    I   Y  W    G+ +  +   + AI+E  EE       
Sbjct: 46  LTSSAFAVNKERNKFLMIHHNI---YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPT 102

Query: 200 QSPFAQLDIPRIGQIYIIFLAKLKRPHF----------------SPGP-ESSECRLFALD 242
                   +  +     I   K    H                      E+S       +
Sbjct: 103 PLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFN 162

Query: 243 EIP 245
           EI 
Sbjct: 163 EIS 165

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 142 MVV---GCLI--EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD 196
           MVV   G +I  +   KI     +       WT P G+++ GE   + AIRET EEA   
Sbjct: 1   MVVKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANIT 60

Query: 197 VEVQSPFAQLDI------PRIGQIYIIFLAKLKRPH-FSPGPESSECRLFALDEIP 245
            E  +                 +    +LAKL  P       E    +   L++  
Sbjct: 61  KEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAI 116

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA--------- 193
           +     E + +  +  R       +W   AG  E  E+ +E A RE+ EE          
Sbjct: 11  IPFIKTEANYQFGVLHRT---DADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMY 67

Query: 194 RADVEVQSPFAQLDIPRIGQI-YIIFLAKLKR--PHFSPGPESSECRLFALDEI 244
             D     P       +   +    F   L       +   E SE R  + +  
Sbjct: 68  SLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESA 121

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY---GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           VV  +I   +K L  +R           +  P G +E GES  E   RE  EE    +EV
Sbjct: 8   VVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV 67

Query: 200 QSPFAQLD 207
                 + 
Sbjct: 68  GEKLLTVH 75

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           V   L++ D ++LL +R    S  GLW  P G +E GE+     IRE  EE    V+  +
Sbjct: 32  VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADN 91

Query: 202 PF 203
            F
Sbjct: 92  LF 93

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
               LI+ D ++LL +R    S  GLW  P G +E GE+     +RE  EE   D   
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRA 68

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           ++ VG +   + +I + +R  +         P G +E+GE+  +  +RE  EE     + 
Sbjct: 5   QIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQH 64

Query: 200 QSPFAQLD 207
            S F +L+
Sbjct: 65  FSLFEKLE 72

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 136 AYQNPKMVVGCLI----EHDKKILLCKRKIEPSYGLWTLPAGYME--IGESAAEGAIRET 189
           A++   + V  ++    +   K+LL +R   P  GLW LP G+++    ES  +  +R+ 
Sbjct: 17  AFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKL 76

Query: 190 WEEARADVEVQSPFAQLDIP 209
            E+             +   
Sbjct: 77  AEKTAVVPPYIEQLCTVGNN 96

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 54.9 bits (131), Expect = 7e-09
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP 209
           ++ +  R   P Y  W+ P G +E  E+    A+RE  EE  + V++     +++ P
Sbjct: 39  EVCIVHR---PKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYP 92

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 134 KIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
           K+  +   ++V    +  K++L+ +R+ +P    W    G +E GE+A + A+RE  EE
Sbjct: 4   KVYKRPVSILVVIYAQDTKRVLMLQRRDDP--DFWQSVTGSVEEGETAPQAAMREVKEE 60

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti} Length = 321

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 136 AYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARA 195
           A    ++ +G ++E    + L            +LP   +E G   A        +    
Sbjct: 178 AAVEGEIRLGAVLEQQGAVFLAGN------ETLSLPNCTVE-GGDPARTLAAYLEQLTGL 230

Query: 196 DVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSIS 255
           +V +   ++  +    G+  I++ A              + R     E+     + S+ +
Sbjct: 231 NVTIGFLYSVYEDKSDGRQNIVYHALA------SDGAPRQGRFLRPAELAAAKFSSSATA 284

Query: 256 VTLQLVRFYFEH 267
             +   RF  E 
Sbjct: 285 DIIN--RFVLES 294

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 21/116 (18%)

Query: 146 CLIEHDK-KILLCKRKIEPSY-----GLWTLPAGYMEIGESAAEGAIRETWEE---ARAD 196
            L      ++LL  R    S      G    P G ++ GE+  + A+RE  EE     A 
Sbjct: 41  ALTREADPRVLLTVR---SSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 97

Query: 197 VEVQSPFAQLDIPRIGQIYII--FLAKLKRPHFSPGPESSE-CRLFALDEIPFDSL 249
           V +     +LD       + +   L ++          + E  ++          L
Sbjct: 98  VTL---LGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQII---TPTLAEL 147

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 144 VG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE---ARADVEV 199
           VG  +     +++  +R  + S   W  P G +  GESA +   RE +EE   +R DV +
Sbjct: 11  VGIVICNRQGQVMWARRFGQHS---WQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 34/144 (23%)

Query: 117 EVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCK--RKIEPSYGLWTLPAGY 174
           E  +G  ++        + A       V  +   D  ++L +       SY       G 
Sbjct: 32  EFSNGVRRVYERMRPTNREA-------VMIVPIVDDHLILIREYAVGTESY-ELGFSKGL 83

Query: 175 MEIGESAAEGAIRETWEEA--RADVEVQSPFAQLDIPRIGQIYI----------IFLAKL 222
           ++ GES  E A RE  EE    A+          D+  + ++ +          I +A+ 
Sbjct: 84  IDPGESVYEAANRELKEEVGFGAN----------DLTFLKKLSMAPSYFSSKMNIVVAQD 133

Query: 223 KRPHFSPG--PESSECRLFALDEI 244
             P    G  PE      + L  +
Sbjct: 134 LYPESLEGDEPEPLPQVRWPLAHM 157

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 144 VG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
           VG CL+ +DKKI    R   P    W +P G ++ GE     AIRE  EE
Sbjct: 17  VGICLMNNDKKIFAASRLDIP--DAWQMPQGGIDEGEDPRNAAIRELREE 64

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 143 VVGCLIEHDK-KILLCKRKIEPSY--GLWTLPA-GYMEIGESAAEGAIRETWEEARADVE 198
               ++     KIL+ +R     +  G+    A G ++  E   E A RE  EE      
Sbjct: 39  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 98

Query: 199 VQSPFAQL--DIPRIGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEI 244
             +   Q   +         +F      P F+    E SE      +EI
Sbjct: 99  PFAEHGQFYFEDKNCRVWGALFSCVSHGP-FALQEDEVSEVCWLTPEEI 146

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 167 LWTLPAGYMEIGESAAEGAIRETWEEA--RADVEVQSPFAQLDIPRIG---QIYIIFLAK 221
              +PAG +E GE   E A RE  E+     D+     +        G   +   +FLA+
Sbjct: 61  PLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYF----VSPGFTDEKTHVFLAE 116

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 25/93 (26%)

Query: 167 LWTLPAGYMEIGESAAEGAIRETWEEA--RADVEVQSPFAQLDIPRIGQIY--------- 215
           L  +PAG ++ GE+    A RE  EE    A+           +  +   +         
Sbjct: 69  LLEVPAGKVDEGETPEAAARRELREEVGAEAE----------TLIPLPSFHPQPSFTAVV 118

Query: 216 -IIFLAK-LKRPHFSPG--PESSECRLFALDEI 244
              FLA   +          E  E     L E+
Sbjct: 119 FHPFLALKARVVTPPTLEEGELLESLELPLTEV 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	100.0
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	100.0
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.91
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.87
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.87
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.86
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.86
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.85
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.84
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.84
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.84
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.84
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.84
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.83
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.83
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.83
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.82
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.82
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.82
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.81
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.81
3f13_A	163	Putative nudix hydrolase family member; structural	99.81
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.8
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.8
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.8
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.8
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.8
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.79
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.79
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.79
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.79
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.79
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.79
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.78
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.78
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.78
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.78
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.78
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.77
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.77
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.76
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.76
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.76
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.75
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.75
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.75
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.74
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.73
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.73
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.72
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.71
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.7
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.7
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.7
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.69
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.69
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.68
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.68
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.68
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.67
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.67
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.67
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.67
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.66
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.65
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.63
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.63
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.61
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.6
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.58
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.54
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.48
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.48
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.28
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.27
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.14
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.96
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	97.68
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	96.55
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	96.07
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	94.35
4esj_A	257	Type-2 restriction enzyme DPNI; restriction endonu	92.67
1twf_I	122	B12.6, DNA-directed RNA polymerase II 14.2 kDa pol	91.46
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	91.14
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	88.83
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	88.34
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	87.98
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	87.82
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	87.22
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	86.28
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	85.48
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	82.31
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	81.38
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	81.2
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	80.86
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	80.75
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	80.57
2zkr_2	97	60S ribosomal protein L37E; protein-RNA complex, 6	80.56

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=100.00  E-value=5.6e-39  Score=291.53  Aligned_cols=192  Identities=19%  Similarity=0.288  Sum_probs=171.0

Q ss_pred             ecceeecccccccCCCCCccHHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEe
Q 023914           70 RASRVCATRSESNQDATSSHPSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIE  149 (275)
Q Consensus        70 ~~~~~~~~r~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~  149 (275)
                      .++++.++|.++..++.++.++++|.+|.+|+++++|||.||+++...    +++++++|++||+.+||++.++|++++.
T Consensus        73 ~~~~~~~lr~~~~~~~~~~~~~~~a~~l~~w~~~~~fC~~CG~~~~~~----~~~~~~~C~~C~~~~yp~~~~~viv~v~  148 (269)
T 1vk6_A           73 RRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCGHEMYPS----KTEWAMLCSHCRERYYPQIAPCIIVAIR  148 (269)
T ss_dssp             CSSCEECTTHHHHHCHHHHHHHHHHHHHHHHHHTTSBCTTTCCBEEEC----SSSSCEEESSSSCEECCCCEEEEEEEEE
T ss_pred             CCccchhHHHHhcCCHHHhHHHHHHHHHHhhhhcCCccccCCCcCccC----CCceeeeCCCCCCEecCCCCcEEEEEEE
Confidence            467788999887557778889999999999999999999999999776    6889999999999999999999999999


Q ss_pred             eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCCC
Q 023914          150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSP  229 (275)
Q Consensus       150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~~  229 (275)
                      ++++|||+||+..+ .|+|++|||++|+|||+++||+||++||||+++..+++++++++++++..+++|.+.+.++++.+
T Consensus       149 ~~~~vLL~rr~~~~-~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~~  227 (269)
T 1vk6_A          149 RDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVI  227 (269)
T ss_dssp             ETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred             eCCEEEEEEecCCC-CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCCCCEEEEEEEEEECCCCcCC
Confidence            99999999999876 79999999999999999999999999999999999999999999999999999999988777766


Q ss_pred             C-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914          230 G-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       230 ~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~  269 (275)
                      + +|..+++||+++|++..  . ....++..+|+.|++..+
T Consensus       228 ~~~E~~~~~W~~~~el~~l--~-~~~si~~~li~~~l~~~r  265 (269)
T 1vk6_A          228 DPKELLEANWYRYDDLPLL--P-PPGTVARRLIEDTVAMCR  265 (269)
T ss_dssp             CTTTEEEEEEEETTSCCSC--C-CTTSHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEHHHhhhc--c-cCcHHHHHHHHHHHHHHH
Confidence            4 79999999999999853  2 334456677889987643

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=100.00  E-value=2.7e-32  Score=233.58  Aligned_cols=164  Identities=47%  Similarity=0.853  Sum_probs=143.6

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHH
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAA  182 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~e  182 (275)
                      .++|||.||+++....+.|+...+..|+.||+..|++|.++|.+++.++++|||++|...+..|.|++|||++|+|||++
T Consensus         2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~   81 (189)
T 3cng_A            2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLV   81 (189)
T ss_dssp             -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTCCHH
T ss_pred             CcccCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCCCCCeEECceeeccCCCCHH
Confidence            47999999999988878777788899999999999999999999998899999999987666789999999999999999


Q ss_pred             HHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHH
Q 023914          183 EGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVR  262 (275)
Q Consensus       183 eAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~  262 (275)
                      +||+||++||||+++....+++.+.++..+..+++|.+....+++...+|..+++|+++++++...+.++....++.   
T Consensus        82 ~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~---  158 (189)
T 3cng_A           82 QGAARETLEEANARVEIRELYAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLK---  158 (189)
T ss_dssp             HHHHHHHHHHHCCCEEEEEEEEEEEEGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHH---
T ss_pred             HHHHHHHHHHHCCccccceeEEEEecCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHH---
Confidence            99999999999999988888888888777888899999987776666788999999999999855677887776655   


Q ss_pred             HHHhhcc
Q 023914          263 FYFEHMT  269 (275)
Q Consensus       263 ~~l~~~~  269 (275)
                      +|++++.
T Consensus       159 ~~l~~~~  165 (189)
T 3cng_A          159 RYMEERH  165 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcc
Confidence            7777653

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.91  E-value=1.4e-25  Score=207.98  Aligned_cols=184  Identities=15%  Similarity=0.193  Sum_probs=138.1

Q ss_pred             cceeecccccccC--CCCC----ccHH-HHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEE
Q 023914           71 ASRVCATRSESNQ--DATS----SHPS-SAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMV  143 (275)
Q Consensus        71 ~~~~~~~r~~~~~--~~~~----~~~~-~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~  143 (275)
                      ++....+|+++..  +..+    .-.. +.|..|.+|+.+++||+.||+++...      ..+.   .|+...||++.++
T Consensus       140 ~iSST~IR~~~~~~g~~~~~i~~lvP~~~va~~I~~w~~~~r~c~~c~~~~~~~------~~~~---~~~~~~~~~~~~~  210 (352)
T 2qjt_B          140 NFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVI------EYKR---LWLKAPFKPNFVT  210 (352)
T ss_dssp             CCCHHHHHHHHHTTCCCGGGCSCSSTTSHHHHHHHHHTTSHHHHHHHHHHHHHH------HHHH---HHSSSSSCCEEEE
T ss_pred             CCCchHHHHHHhccCcccchhhhcCChHHHHHHHHHHhcChHHhHhhhhHHHHH------HHHH---HhcccCCCCCceE
Confidence            4556678877653  3333    2456 89999999999999999999997432      1222   6899999999999


Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccce----eeEEEEeCCC------CE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS----PFAQLDIPRI------GQ  213 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~----~~~~~~~~~~------~~  213 (275)
                      |.+++.++++|||++|...+..|.|++|||++|+|||+++||+||++||||+++....    +.....++.+      +.
T Consensus       211 v~~vv~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (352)
T 2qjt_B          211 VDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRT  290 (352)
T ss_dssp             EEEEEEETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSEE
T ss_pred             EEEEEEECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCccE
Confidence            9998889999999999877667999999999999999999999999999999987543    2233334332      24


Q ss_pred             EEEEEEEEEcCCC--CC--CCCCceeEEEecC-CCCCCC-CCCCcHHHHHHHHHHHHHh
Q 023914          214 IYIIFLAKLKRPH--FS--PGPESSECRLFAL-DEIPFD-SLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       214 ~~~~f~a~~~~~e--~~--~~~E~~d~~W~~~-deL~~~-~l~~~s~~~al~li~~~l~  266 (275)
                      .+++|.+.+..++  +.  .++|..+++|+++ ++++.. ...++..+.+++   .+++
T Consensus       291 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~---~~~~  346 (352)
T 2qjt_B          291 ISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIIT---ILLE  346 (352)
T ss_dssp             EEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHH---HHHH
T ss_pred             EEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHH---HHHH
Confidence            6778888887665  32  3588999999999 998753 123445555444   5544

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.87  E-value=1.1e-22  Score=165.18  Aligned_cols=119  Identities=24%  Similarity=0.408  Sum_probs=93.3

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCC----EE
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI  214 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~----~~  214 (275)
                      ..++++||.++++|||++|.    .|.|++|||++|+|||+++||+||++||||+++....+++...+  +..+    ..
T Consensus         4 ~~aag~vv~~~~~vLL~~r~----~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~   79 (134)
T 3i7u_A            4 EFSAGGVLFKDGEVLLIKTP----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKT   79 (134)
T ss_dssp             EEEEEEEEEETTEEEEEECT----TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEEEECCEEEEEEeC----CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEE
Confidence            35677788889999999975    57899999999999999999999999999999988888775432  2111    23


Q ss_pred             EEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          215 YIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       215 ~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      .++|.+...++++.+++|+.+++||+++|++. .+.++..+..++   ++++.
T Consensus        80 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~-~l~~~~~r~il~---~a~~l  128 (134)
T 3i7u_A           80 VKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKK-LLKYKGDKEIFE---KALKL  128 (134)
T ss_dssp             EEEEEEEEEEECCCCCTTSSEEEEEEHHHHHH-HBCSHHHHHHHH---HHHHH
T ss_pred             EEEEEEEEcCCcCcCChhheEEEEEEHHHHhh-hcCChHHHHHHH---HHHHH
Confidence            45688888888888888999999999999874 245676665444   55443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.87  E-value=6e-21  Score=153.85  Aligned_cols=126  Identities=24%  Similarity=0.472  Sum_probs=99.6

Q ss_pred             CCccccCCcEEEEEEEee---CCe--EEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE
Q 023914          133 GKIAYQNPKMVVGCLIEH---DKK--ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD  207 (275)
Q Consensus       133 g~~~y~~p~~~V~viI~~---~~~--iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~  207 (275)
                      |+. |++|.++|.+++.+   +++  +||++|...+  +.|++|||++|+|||+++||+||++||||+++....+++.+.
T Consensus         2 ~~~-y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~~--~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   78 (139)
T 2yyh_A            2 GFN-VKTPLLATDVIIRLWDGENFKGIVLIERKYPP--VGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYS   78 (139)
T ss_dssp             CCC-CCCCEEEEEEEEEEEETTEEEEEEEEEECSSS--CSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_pred             Ccc-ccCCeEEEEEEEEEEcCCCcEEEEEEEecCCC--CcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEEC
Confidence            567 89999988887765   778  9999998654  349999999999999999999999999999998888888776


Q ss_pred             eCC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          208 IPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       208 ~~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      .+.    .+..+++|.+.. .+++...+|..+++|+++++++...+.++. ..   ++++|++
T Consensus        79 ~~~~~~~~~~~~~~f~~~~-~~~~~~~~e~~~~~W~~~~el~~~~l~~~~-~~---~l~~~l~  136 (139)
T 2yyh_A           79 DPERDPRAHVVSVVWIGDA-QGEPKAGSDAKKVKVYRLEEIPLDKLVFDH-KK---IILDFLK  136 (139)
T ss_dssp             CTTSCTTSCEEEEEEEEEE-ESCCCCCTTEEEEEEECTTSCCGGGBCTTH-HH---HHHHHHH
T ss_pred             CCCcCCCceEEEEEEEEec-CCccCCCCCcceEEEEEHHHCCHhhcCCCH-HH---HHHHHHh
Confidence            543    346677888888 455556688899999999999822456664 33   3336665

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.86  E-value=9.5e-21  Score=164.09  Aligned_cols=118  Identities=26%  Similarity=0.417  Sum_probs=96.2

Q ss_pred             CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--
Q 023914          132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--  209 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--  209 (275)
                      |+...|++|.++|.+++.++++|||++|.   ..|.|++|||++|+|||+++||+||++||||+++....+++.+...  
T Consensus        59 ~~~~~~~~~~~~v~~vv~~~~~vLLv~r~---~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~  135 (205)
T 3q1p_A           59 ASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKH  135 (205)
T ss_dssp             SCCCSSCCCEEEEEEEEEETTEEEEEEC------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHH
T ss_pred             ccccCCCCCcceEEEEEEECCEEEEEEEc---CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEecccc
Confidence            34444999999998888889999999987   3689999999999999999999999999999999988888887631  


Q ss_pred             -----CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCc
Q 023914          210 -----RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFS  252 (275)
Q Consensus       210 -----~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~  252 (275)
                           ..+...++|.+...++++..++|..+++|+++++++...+...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~  183 (205)
T 3q1p_A          136 QPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARN  183 (205)
T ss_dssp             SCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBCTTTC
T ss_pred             CCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcCCCcc
Confidence                 1245667788888777777778999999999999996544333

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.86  E-value=1.1e-22  Score=187.23  Aligned_cols=149  Identities=17%  Similarity=0.284  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCcee
Q 023914           90 PSSAAVHSAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWT  169 (275)
Q Consensus        90 ~~~~a~~l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~  169 (275)
                      ..+.+..+..|+...+||..||......      ..+ .  .|+...||++.++|.+++.++++|||++|...+.+|.|+
T Consensus       161 p~~v~~~i~~~~~~~r~~~l~~~~~~~~------~~~-~--~~~~~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~g~w~  231 (341)
T 2qjo_A          161 PPAIADYLQTFQKSERYIALCDEYQFLQ------AYK-Q--AWATAPYAPTFITTDAVVVQAGHVLMVRRQAKPGLGLIA  231 (341)
T ss_dssp             CHHHHHHHHHHTTSHHHHHHHHHHHHHH------HHH-H--TTTTSSSCCCEEEEEEEEEETTEEEEEECCSSSSTTCEE
T ss_pred             CHHHHHHHHHhcchHHHHHHHHHHHHHH------HHH-h--hhhccCCCCCceEEEEEEEeCCEEEEEEecCCCCCCeEE
Confidence            3577888999999999999998875332      111 1  288888999999999999899999999998766679999


Q ss_pred             eeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeE----EEEe--CC----CCEEEEEEEEEEcCCCC---CCCCCceeE
Q 023914          170 LPAGYMEIGESAAEGAIRETWEEARADVEVQSPFA----QLDI--PR----IGQIYIIFLAKLKRPHF---SPGPESSEC  236 (275)
Q Consensus       170 lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~----~~~~--~~----~~~~~~~f~a~~~~~e~---~~~~E~~d~  236 (275)
                      +|||++|+|||+++||+||++||||+++....+++    ...+  +.    .+..+++|.+....++.   ..++|..++
T Consensus       232 lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~  311 (341)
T 2qjo_A          232 LPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKA  311 (341)
T ss_dssp             CSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CE
T ss_pred             CCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeE
Confidence            99999999999999999999999999988665432    2233  32    23567888888766553   234788899


Q ss_pred             EEecCCCCCCC
Q 023914          237 RLFALDEIPFD  247 (275)
Q Consensus       237 ~W~~~deL~~~  247 (275)
                      +|+++++++..
T Consensus       312 ~W~~~~el~~~  322 (341)
T 2qjo_A          312 WWMSLADLYAQ  322 (341)
T ss_dssp             EEEEHHHHHHT
T ss_pred             EEeeHHHHhhh
Confidence            99999999853

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.85  E-value=1.1e-20  Score=154.55  Aligned_cols=126  Identities=24%  Similarity=0.419  Sum_probs=100.0

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC---CEEE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---GQIY  215 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~---~~~~  215 (275)
                      +|..+|++++.+++++||++|.. +..|.|.+|||++|+|||+++||+||++||||+++....+++...+..+   ....
T Consensus         3 ~p~~~v~~ii~~~~~vLl~~r~~-~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T 3shd_A            3 KPHVTVACVVHAEGKFLVVEETI-NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR   81 (153)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEE-TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEE
T ss_pred             CCceEEEEEEEeCCEEEEEEecC-CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEE
Confidence            56788888899999999999973 3468899999999999999999999999999999999998887765432   3556


Q ss_pred             EEEEEEEcCCC-CCC-CCCceeEEEecCCCC-CCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          216 IIFLAKLKRPH-FSP-GPESSECRLFALDEI-PFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       216 ~~f~a~~~~~e-~~~-~~E~~d~~W~~~deL-~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      ++|.+....+. ..+ ++|..+++|++++++ .......+....++.   +|++++
T Consensus        82 ~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~---~~~~~~  134 (153)
T 3shd_A           82 FLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIR---CYQSGQ  134 (153)
T ss_dssp             EEEEEECSSCCCCCCCSTTCCEEEEECHHHHHTCSCBSSTHHHHHHH---HHHHTC
T ss_pred             EEEEEEccccCcCCCCcccceeeEEecHHHhhccccccCchHHHHHH---HHHhCC
Confidence            78888877653 333 488899999999999 222445566665555   888764

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.2e-20  Score=153.34  Aligned_cols=125  Identities=25%  Similarity=0.333  Sum_probs=98.8

Q ss_pred             EEEEE-EEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEE
Q 023914          142 MVVGC-LIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLA  220 (275)
Q Consensus       142 ~~V~v-iI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a  220 (275)
                      .++++ +++++++|||++|...+..|.|++|||++|.|||+++||+||++||||+++....+++.+... .+...++|.+
T Consensus        21 ~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~-~~~~~~~f~~   99 (156)
T 3gg6_A           21 YVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG-PSWVRFVFLA   99 (156)
T ss_dssp             EEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS-TTEEEEEEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC-CCEEEEEEEE
Confidence            34443 445678999999987666799999999999999999999999999999999999998887643 4567778888


Q ss_pred             EEcCCCCC----CCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          221 KLKRPHFS----PGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       221 ~~~~~e~~----~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      ....++..    .++|..+++|+++++++. .+..+....++.....|+.+.
T Consensus       100 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~~~~~~~~~~l~~~~~~~~~~  150 (156)
T 3gg6_A          100 RPTGGILKTSKEADAESLQAAWYPRTSLPT-PLRAHDILHLVELAAQYRQQA  150 (156)
T ss_dssp             EEEEECCCCGGGCSSSCSEEEEEETTSCCS-SBSCTHHHHHHHHHHHHHHHH
T ss_pred             EeeCCeeccCCCCCcceeeeEEEcHHHCcc-cccchhHHHHHHHHHHHhhcC
Confidence            87665533    237888999999999996 445566666777666776654

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.84  E-value=3e-20  Score=153.58  Aligned_cols=126  Identities=25%  Similarity=0.308  Sum_probs=96.4

Q ss_pred             CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC-
Q 023914          132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR-  210 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~-  210 (275)
                      +.....+.+..+|.+++.++++|||++|...+..|.|.+|||++|+|||+++||+||++||||+++....+++.+.... 
T Consensus        20 ~~m~~~~~~~~~v~~vi~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   99 (157)
T 4dyw_A           20 GSMQHTEQPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDA   99 (157)
T ss_dssp             ------CCCEEEEEEEEEETTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEET
T ss_pred             CCCCCCCCceeEEEEEEEECCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeecc
Confidence            3344456677888888888999999999977667999999999999999999999999999999999888888765432 


Q ss_pred             -C--CEEEEEEEEEEcCCCCC--CCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          211 -I--GQIYIIFLAKLKRPHFS--PGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       211 -~--~~~~~~f~a~~~~~e~~--~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                       .  +..+++|.+....++..  ..+|..+++|+++++++.  ...+....+++
T Consensus       100 ~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~--~l~~~~~~~l~  151 (157)
T 4dyw_A          100 ANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ--PLTHATRIALE  151 (157)
T ss_dssp             TTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS--SBCHHHHHHHH
T ss_pred             CCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc--ccCHHHHHHHH
Confidence             2  34557788877665543  237889999999999995  34455555554

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.84  E-value=3.9e-20  Score=160.33  Aligned_cols=123  Identities=32%  Similarity=0.538  Sum_probs=95.3

Q ss_pred             CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe---
Q 023914          132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI---  208 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~---  208 (275)
                      |+...|++|.+.|.++|.++++|||++|.    .|.|++|||++|+|||+++||+||++||||+++....+++.+.+   
T Consensus        61 ~~~~~y~~~~~~v~~vv~~~~~vLLvrr~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~  136 (206)
T 3o8s_A           61 CNETGYQTPKLDTRAAIFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKN  136 (206)
T ss_dssp             -------CCEEEEEEEEEETTEEEEEECT----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHH
T ss_pred             ccccCCCCCCccEEEEEEECCEEEEEEec----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEecccc
Confidence            44445899999998888888999999987    68899999999999999999999999999999999998888762   


Q ss_pred             CC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          209 PR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       209 ~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      ..    .+...++|.+....+++..++|..+++|+++++++...+. +.....++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~-~~~~~~l~  190 (206)
T 3o8s_A          137 NPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLG-KNTAEQLA  190 (206)
T ss_dssp             CC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTT-TCCHHHHH
T ss_pred             CCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccCC-CchHHHHH
Confidence            22    2455677888887777767789999999999999965443 33344344

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=2.7e-20  Score=152.56  Aligned_cols=124  Identities=23%  Similarity=0.256  Sum_probs=96.0

Q ss_pred             cEEEEEEEe-eCCeEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEE
Q 023914          141 KMVVGCLIE-HDKKILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIY  215 (275)
Q Consensus       141 ~~~V~viI~-~~~~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~  215 (275)
                      ..+|.+++. .+++|||++|...  +.+|.|.+|||++|+||++++||+||++||||+.+....+++.+.+.  .....+
T Consensus         8 ~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   87 (153)
T 3grn_A            8 IISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVIA   87 (153)
T ss_dssp             EEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEEE
T ss_pred             EEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEEE
Confidence            345555554 5789999999864  35799999999999999999999999999999999988888876544  344667


Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       216 ~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      ++|.+....+++..++|..+++|++++++......++..+..++   .+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~---~l~~~  136 (153)
T 3grn_A           88 IVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFE---RFDRE  136 (153)
T ss_dssp             EEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHH---HHHHH
T ss_pred             EEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHH---HHhcc
Confidence            78888887777766789999999999999965422344554444   55543

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.84  E-value=3.9e-20  Score=149.42  Aligned_cols=124  Identities=20%  Similarity=0.186  Sum_probs=93.4

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCC---CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEP---SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQ  213 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p---~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~  213 (275)
                      ++..++++++.++++|||++|...+   .+|.|.+|||++|+||++++||.||++||||+++...++++.+.+.+  .+.
T Consensus         4 ~~~~~v~~vi~~~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~   83 (140)
T 3gwy_A            4 KSIEVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEI   83 (140)
T ss_dssp             SCEEEEEEEEEETTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCE
T ss_pred             eEEEEEEEEEEeCCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceE
Confidence            4455667777779999999998765   57899999999999999999999999999999999999888876543  457


Q ss_pred             EEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      .+++|.+....+++.. +|..+++|+++++++...+. +..+.+++   .+.+.
T Consensus        84 ~~~~f~~~~~~~~~~~-~E~~~~~W~~~~el~~~~~~-~~~~~il~---~~~~~  132 (140)
T 3gwy_A           84 TMHAFLCHPVGQRYVL-KEHIAAQWLSTREMAILDWA-EADKPIVR---KISEQ  132 (140)
T ss_dssp             EEEEEEEEECCSCCCC-CSSCEEEEECHHHHTTSCBC-GGGHHHHH---HHHC-
T ss_pred             EEEEEEEEecCCcccc-cccceeEeccHHHHhhCCCC-cccHHHHH---HHHhC
Confidence            7788999987765443 68889999999999965443 44444444   55543

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.83  E-value=4.2e-20  Score=154.03  Aligned_cols=138  Identities=20%  Similarity=0.266  Sum_probs=93.6

Q ss_pred             eeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE
Q 023914          126 RAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ  205 (275)
Q Consensus       126 ~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~  205 (275)
                      ...|+.+.........+.|++++.++++|||++|...  .|.|++|||++|+||++++||+||++||||+++....+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~--~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   85 (171)
T 3id9_A            8 CKFNRKRRLYIENIMQVRVTGILIEDEKVLLVKQKVA--NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYV   85 (171)
T ss_dssp             --------------CEEEEEEEEEETTEEEEEECSST--TCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             cccChhhhhccCCceEEEEEEEEEECCEEEEEEEECC--CCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEE
Confidence            3456666665556667788888888999999999863  68999999999999999999999999999999988888888


Q ss_pred             EEeCCC--CEEEEEEEEEEcCCCCCC-----C-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcc
Q 023914          206 LDIPRI--GQIYIIFLAKLKRPHFSP-----G-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       206 ~~~~~~--~~~~~~f~a~~~~~e~~~-----~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~  269 (275)
                      +..+..  ...++.|.+....+++..     + +|..+++|++++++....+.. .....   +++.+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~-~~~~~---l~~~~~~~~  153 (171)
T 3id9_A           86 CDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSE-TFINL---ISGGLANAG  153 (171)
T ss_dssp             EEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCT-TCSHH---HHHGGGGTT
T ss_pred             EcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCH-HHHHH---HHHhhcccc
Confidence            776543  456677888877665432     2 788899999999999654443 33333   336665543

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.83  E-value=2.5e-20  Score=151.93  Aligned_cols=128  Identities=20%  Similarity=0.197  Sum_probs=97.0

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--C--EE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--G--QI  214 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~--~~  214 (275)
                      +|..+|++++.++++|||++|...+.+|.|.+|||++|+|||+++||+||++||||+++....+++.+.+..+  +  ..
T Consensus         6 ~~~~~v~~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T 2b0v_A            6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL   85 (153)
T ss_dssp             CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             cCCEEEEEEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEE
Confidence            4567777778889999999998653367999999999999999999999999999999998888887654322  2  34


Q ss_pred             EEEEEEEEcCCCC--CCCCCceeEEEecCCCCCCC--CCCCcHHHHHHHHHHHHHhhcc
Q 023914          215 YIIFLAKLKRPHF--SPGPESSECRLFALDEIPFD--SLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       215 ~~~f~a~~~~~e~--~~~~E~~d~~W~~~deL~~~--~l~~~s~~~al~li~~~l~~~~  269 (275)
                      +++|.+....+..  ..++|..+++|+++++++..  ....+....++.   +|++...
T Consensus        86 ~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~---~~~~~~~  141 (153)
T 2b0v_A           86 RFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIE---DYHAGKR  141 (153)
T ss_dssp             EEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHH---HHHTTCC
T ss_pred             EEEEEEEeCCCCCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHH---HHHhCCC
Confidence            4678887765432  33578899999999998853  233455554444   8887653

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.83  E-value=2.2e-19  Score=148.15  Aligned_cols=113  Identities=24%  Similarity=0.253  Sum_probs=86.8

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE-----------Ee-
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-----------DI-  208 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~-----------~~-  208 (275)
                      ..++.+++.++++|||++|+.   .|.|.+|||++|+|||+++||+||++||||+++....+++.+           .+ 
T Consensus         6 ~~~v~~vi~~~~~vLL~~r~~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 3f6a_A            6 HFTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI   82 (159)
T ss_dssp             CEEEEEEEEETTEEEEEECSS---SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred             eEEEEEEEEECCEEEEEEcCC---CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence            456666676789999999873   689999999999999999999999999999999877766321           11 


Q ss_pred             -----------CCCCEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          209 -----------PRIGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       209 -----------~~~~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                                 +......++|.+....+++.. .+|..+++|+++++++...+.++....
T Consensus        83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~  142 (159)
T 3f6a_A           83 NPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILV  142 (159)
T ss_dssp             CCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHH
T ss_pred             CccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHH
Confidence                       112245578999887777665 488999999999999965544444433

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.82  E-value=9.5e-20  Score=153.93  Aligned_cols=127  Identities=20%  Similarity=0.233  Sum_probs=97.4

Q ss_pred             ccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC----C
Q 023914          137 YQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI----G  212 (275)
Q Consensus       137 y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~----~  212 (275)
                      .+++..++++++.++++|||++|...+..|.|.+|||++|+||++++||+||++||||+++....+++.+.+...    .
T Consensus        21 m~~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  100 (176)
T 3q93_A           21 MGASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPEL  100 (176)
T ss_dssp             --CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCE
T ss_pred             CCCCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcE
Confidence            345677788888899999999997766689999999999999999999999999999999999998887754332    3


Q ss_pred             EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          213 QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       213 ~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      ..+++|.+....+++.. .|..+++|+++++++...+. +..+..+.   .++++.
T Consensus       101 ~~~~~f~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~~  151 (176)
T 3q93_A          101 MDVHVFCTDSIQGTPVE-SDEMRPCWFQLDQIPFKDMW-PDDSYWFP---LLLQKK  151 (176)
T ss_dssp             EEEEEEEESCEESCCCC-CSSEEEEEEETTCCCGGGBC-TTHHHHHH---HHHTTC
T ss_pred             EEEEEEEEECCCCCcCC-CcceeeEEeeHHHccccccC-cchHHHHH---HHHcCC
Confidence            45677888765555443 45667899999999965554 34444444   666654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.82  E-value=4.9e-21  Score=157.85  Aligned_cols=138  Identities=22%  Similarity=0.272  Sum_probs=99.2

Q ss_pred             cCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe
Q 023914          129 CTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI  208 (275)
Q Consensus       129 C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~  208 (275)
                      +.+||.+.|.+....  .+-+++.++||++|+..  +|.|.+|||++|+|||+++||+||++||||+++.....+..+..
T Consensus         3 ~ra~G~iifr~~~~~--~~~n~~~e~LL~~r~~~--~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~   78 (155)
T 3u53_A            3 LRACGLIIFRRCLIP--KVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKR   78 (155)
T ss_dssp             -CEEEEEEEEECCCS--SSSSCSEEEEEEEESSS--SCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEE
T ss_pred             ceEeEEEEEcccccc--ceeCCCcEEEEEEecCC--CCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEee
Confidence            446777777542111  11244568999998754  47899999999999999999999999999999987776654321


Q ss_pred             ------CCCCEEEEEEEEEEcCCC--CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcccc
Q 023914          209 ------PRIGQIYIIFLAKLKRPH--FSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI  271 (275)
Q Consensus       209 ------~~~~~~~~~f~a~~~~~e--~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~~i  271 (275)
                            .........|.+.....+  +..++|..+++|++++|+.. .+.++..+.+++-..+|+....++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~-~~~~~~~~~~L~~a~~~L~~~~al  148 (155)
T 3u53_A           79 ELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQ-LAQFKEMKAALQEGHQFLCSIEAL  148 (155)
T ss_dssp             EEEEEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHH-HHCSHHHHHHHHHHHHHHHHHHC-
T ss_pred             eeecCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHH-HcCCHHHHHHHHHHHHHHhCchhh
Confidence                  222344456677766543  45568999999999999764 345788888888788888877655

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.81  E-value=1.5e-19  Score=159.28  Aligned_cols=121  Identities=19%  Similarity=0.298  Sum_probs=97.0

Q ss_pred             CccccCCcEEEEEEEee----CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC
Q 023914          134 KIAYQNPKMVVGCLIEH----DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP  209 (275)
Q Consensus       134 ~~~y~~p~~~V~viI~~----~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~  209 (275)
                      ...|++|.++|.++|..    +++|||++|...+..|.|++|||++|+|||+++||+||++||||+++...+.++.+..+
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~   85 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   85 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence            45678888888877752    46999999988777899999999999999999999999999999999888888887644


Q ss_pred             C----CCEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHH
Q 023914          210 R----IGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISV  256 (275)
Q Consensus       210 ~----~~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~  256 (275)
                      .    .+.+.++|.+.+..++... ++|..+++|+++++++  .+.+++..+
T Consensus        86 ~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~--~l~~dh~~i  135 (226)
T 2fb1_A           86 DRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELP--ALIFDHPEM  135 (226)
T ss_dssp             TSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCC--CBSTTHHHH
T ss_pred             CcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhh--hccCCHHHH
Confidence            3    2456678888876654432 3678899999999998  567776433

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.81  E-value=7.8e-20  Score=150.02  Aligned_cols=121  Identities=15%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             CCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc--ccceeeEEEEe--CCC--
Q 023914          139 NPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV--EVQSPFAQLDI--PRI--  211 (275)
Q Consensus       139 ~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v--~~~~~~~~~~~--~~~--  211 (275)
                      +|.++|.+++.+ +++|||++|...+..|.|++|||++|+||++++||+||++||||+++  ....+++....  +..  
T Consensus        16 ~~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T 1rya_A           16 TPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             CcEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEccccc
Confidence            455666666654 78999999987666799999999999999999999999999999996  46677776543  221  


Q ss_pred             ------CEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          212 ------GQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       212 ------~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                            +..+++|.+....+++.. .+|..+++|+++++++...+.++..+.+++
T Consensus        96 ~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~  150 (160)
T 1rya_A           96 GTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFL  150 (160)
T ss_dssp             BSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGC
T ss_pred             CCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHH
Confidence                  456678888876655544 478899999999999865555555555444

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.81  E-value=7e-19  Score=147.44  Aligned_cols=111  Identities=19%  Similarity=0.190  Sum_probs=84.4

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFL  219 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~  219 (275)
                      ...++++++.+++++||++|+    .|.|.+|||++|+|||+++||+||++||||+++....+++.+..+.  ..+++|.
T Consensus        15 ~~~~~~~ii~~~~~vLL~~r~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~~f~   88 (163)
T 3f13_A           15 LARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF--NAHKVYL   88 (163)
T ss_dssp             CEEEEEEECEETTEEEEEECC-------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS--EEEEEEE
T ss_pred             ceEEEEEEEEeCCEEEEEEEC----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC--eEEEEEE
Confidence            345566677889999999986    5899999999999999999999999999999999888888876654  7777888


Q ss_pred             EEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      +.. .+++.+++|..+++||+.++.+ ..+. +....++.
T Consensus        89 ~~~-~~~~~~~~E~~~~~W~~~~~~~-~~l~-~~~~~il~  125 (163)
T 3f13_A           89 CIA-QGQPKPQNEIERIALVSSPDTD-MDLF-VEGRAILR  125 (163)
T ss_dssp             EEC--CCCCCCTTCCEEEEESSTTCS-SCBC-HHHHHHHH
T ss_pred             EEE-CCcCccCCCceEEEEECccccc-CCCC-HHHHHHHH
Confidence            875 4666666799999999954443 2333 34444444

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.80  E-value=5.6e-19  Score=146.38  Aligned_cols=117  Identities=25%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             cEEEEEEEeeCCeEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE--------EEeCC
Q 023914          141 KMVVGCLIEHDKKILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ--------LDIPR  210 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~--------~~~~~  210 (275)
                      ..++++++.++++|||++|...  +.+|.|++|||++|+||++++||+||++||||+++....++..        ..++.
T Consensus        28 ~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  107 (165)
T 3oga_A           28 RTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYAD  107 (165)
T ss_dssp             EEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCC
Confidence            4566667788999999998854  2469999999999999999999999999999999876665432        23333


Q ss_pred             CC-----EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHH
Q 023914          211 IG-----QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTL  258 (275)
Q Consensus       211 ~~-----~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al  258 (275)
                      ..     ..+++|.+....+.+..++|..+++|+++++++...+ .+..+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-~~~~~~~l  159 (165)
T 3oga_A          108 GRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDL-NVATRHTL  159 (165)
T ss_dssp             CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCB-CHHHHHHH
T ss_pred             CCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhhCCC-CHHHHHHH
Confidence            32     2345677777766666678999999999999985433 24444333

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.80  E-value=1.5e-19  Score=160.86  Aligned_cols=132  Identities=20%  Similarity=0.302  Sum_probs=97.1

Q ss_pred             ecCCCCCccccCCcEEEEEEEe--eC--CeEEEEEeccCCCCCceeeeeEEeeC--CCCHHHHHHHHHHHHhCCccccce
Q 023914          128 ICTVCGKIAYQNPKMVVGCLIE--HD--KKILLCKRKIEPSYGLWTLPAGYMEI--GESAAEGAIRETWEEARADVEVQS  201 (275)
Q Consensus       128 ~C~~Cg~~~y~~p~~~V~viI~--~~--~~iLL~rr~~~p~~g~w~lPgG~vE~--GEs~eeAa~REl~EEtGl~v~~~~  201 (275)
                      ....++...|++|.++|.++|.  ++  ++|||++|...+..|.|.+|||++|+  |||+++||+||++||||+++..+.
T Consensus         9 ~l~~~~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~   88 (240)
T 3gz5_A            9 YLANYDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIE   88 (240)
T ss_dssp             ------------CEEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEE
T ss_pred             HHhhcCccccCCCccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCcee
Confidence            3445666788999888877775  33  49999999977778999999999999  999999999999999999998888


Q ss_pred             eeEEEEeCC----CCEEEEEEEEEEcCCCCC-CCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          202 PFAQLDIPR----IGQIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       202 ~~~~~~~~~----~~~~~~~f~a~~~~~e~~-~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      .++.+..+.    .+.+.++|.+.+..+... ..+|..+++|+++++++...+++++..+...
T Consensus        89 ~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~  151 (240)
T 3gz5_A           89 QLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQ  151 (240)
T ss_dssp             EEEEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHH
T ss_pred             eEEEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHH
Confidence            888877643    356778888887654433 2378889999999999877788887554333

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.80  E-value=1.6e-19  Score=153.58  Aligned_cols=120  Identities=28%  Similarity=0.385  Sum_probs=90.0

Q ss_pred             ccccCCc-EEEEEEEee--------CCeEEEEEecc-------CCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccc
Q 023914          135 IAYQNPK-MVVGCLIEH--------DKKILLCKRKI-------EPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE  198 (275)
Q Consensus       135 ~~y~~p~-~~V~viI~~--------~~~iLL~rr~~-------~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~  198 (275)
                      ..|++|. ++|.+++..        +++|||++|..       .+..|.|.+|||++|+|||+++||+||++||||+++.
T Consensus        20 ~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~   99 (187)
T 3i9x_A           20 KEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI   99 (187)
T ss_dssp             ---CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred             hHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            5678888 766655532        46899999943       3468999999999999999999999999999999999


Q ss_pred             cceeeEEEEeCCC----CEEEEEEEEEEcCCC---CCCCCCceeEEEecCCCCCCCCCCCcHH
Q 023914          199 VQSPFAQLDIPRI----GQIYIIFLAKLKRPH---FSPGPESSECRLFALDEIPFDSLAFSSI  254 (275)
Q Consensus       199 ~~~~~~~~~~~~~----~~~~~~f~a~~~~~e---~~~~~E~~d~~W~~~deL~~~~l~~~s~  254 (275)
                      ...+++.+..+..    ....++|.+......   ....+|..+++|+++++++...+.++..
T Consensus       100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~  162 (187)
T 3i9x_A          100 PLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHL  162 (187)
T ss_dssp             CCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHH
T ss_pred             ceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHH
Confidence            9999988765442    355566666654332   2335788899999999999766665543

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.80  E-value=6.3e-19  Score=143.10  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=91.3

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQIYI  216 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~~~  216 (275)
                      +..++++++.++++|||++|... +.+|.|++|||++|+||++++||.||++||||+++....+++...+.  .....++
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~  100 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILIL  100 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEE
Confidence            44666777788899999999865 35799999999999999999999999999999999888888765543  3345567


Q ss_pred             EEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          217 IFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       217 ~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      +|.+....+++ ..+|..+++|++++++....+. +..+.+++
T Consensus       101 ~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~-~~~~~~l~  141 (153)
T 3ees_A          101 FYEILYWKGEP-RAKHHMMLEWIHPEELKHRNIP-EANRKILH  141 (153)
T ss_dssp             EEEECEEESCC-CCSSSSEEEEECGGGGGGSCCC-HHHHTTHH
T ss_pred             EEEEEECCCCc-CCCccceEEEecHHHhhhCCCC-cchHHHHH
Confidence            78887766543 2477889999999999954332 44444444

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.79  E-value=2.3e-19  Score=141.58  Aligned_cols=111  Identities=24%  Similarity=0.331  Sum_probs=86.8

Q ss_pred             EEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEEEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIFLAK  221 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~~~f~a~  221 (275)
                      .++++++++++||++|+.    |.|++|||++|+|||+++||+||++||||+++....+++...+.+  .+..+.+|.+.
T Consensus         6 ~~vi~~~~~~vLl~~r~~----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T 1vcd_A            6 GGVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEECTTSCEEEEECTT----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEcCCCEEEEEEECC----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEEEE
Confidence            334445578999999873    789999999999999999999999999999998888888765543  34566778887


Q ss_pred             EcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          222 LKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       222 ~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      ...++...++|..+++|++++++... +.++..+.+++
T Consensus        82 ~~~~~~~~~~e~~~~~w~~~~el~~~-~~~~~~~~~l~  118 (126)
T 1vcd_A           82 RGEGAPRLEEGMTGAGWFSPEEARAL-LAFPEDLGLLE  118 (126)
T ss_dssp             EEESCCCCCTTCCEEEEECHHHHHHH-BCSHHHHHHHH
T ss_pred             EcCCCCCCCcceeeeEEcCHHHHHHh-hcChhHHHHHH
Confidence            76655445578889999999998742 44566665555

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.79  E-value=4.6e-19  Score=141.95  Aligned_cols=113  Identities=23%  Similarity=0.264  Sum_probs=83.8

Q ss_pred             CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee----EEEEe--CCCCEEEEEEEEEEcC
Q 023914          151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDI--PRIGQIYIIFLAKLKR  224 (275)
Q Consensus       151 ~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~----~~~~~--~~~~~~~~~f~a~~~~  224 (275)
                      +++|||++|+.  .+|.|.+|||++|+|||+++||+||++||||+.+..+..+    +...+  +..+..+++|.+....
T Consensus        17 ~~~vLl~~r~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   94 (138)
T 1ktg_A           17 KIEFLLLQASY--PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNN   94 (138)
T ss_dssp             EEEEEEEEESS--TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEECS
T ss_pred             CcEEEEEEccC--CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCceEEEEEEEEecC
Confidence            36899999873  3579999999999999999999999999999976555443    33333  3334566788888876


Q ss_pred             C-CCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          225 P-HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       225 ~-e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      + ....++|..+++|+++++++.. ..++..+.+++.+.++++
T Consensus        95 ~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           95 PDDVQLSHEHQNWKWCELEDAIKI-ADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             CCCCCCCTTEEEEEEECHHHHHHH-HCCHHHHHHHHHHHHHHH
T ss_pred             CcccCCCchhcEeEeccHHHHHHh-hccchHHHHHHHHHHHhh
Confidence            3 3444588899999999999852 345666666665555553

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.79  E-value=1.9e-19  Score=146.85  Aligned_cols=130  Identities=21%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-CC-CCEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PR-IGQIYI  216 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~~-~~~~~~  216 (275)
                      +..+++++++.++++||+++.+.+ .++.|++|||++|+|||+++||+||++||||+++..+.+++.+.. +. .+..++
T Consensus         5 ~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   84 (145)
T 2w4e_A            5 PRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFY   84 (145)
T ss_dssp             CEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEEE
T ss_pred             CCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceEE
Confidence            444555556678899998876544 356899999999999999999999999999999987777665422 21 234566


Q ss_pred             EEEEEE-cCCCCCC-CCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhcc
Q 023914          217 IFLAKL-KRPHFSP-GPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       217 ~f~a~~-~~~e~~~-~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~~  269 (275)
                      +|.+.. ..+.... ++|..+++|++++++..    ..+.......++.+...|++.+.
T Consensus        85 ~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  143 (145)
T 2w4e_A           85 PLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLTLWQARGELTRRG  143 (145)
T ss_dssp             EEEEEEEEEC--------CEEEEEEEHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHHcCCcCcHHHHHHHHHHHHHhhhhc
Confidence            777763 3233333 47888999999999864    23433344455666667777654

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.79  E-value=3.6e-19  Score=147.71  Aligned_cols=124  Identities=17%  Similarity=0.237  Sum_probs=94.5

Q ss_pred             cCCcEEEEEEEeeCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--C--
Q 023914          138 QNPKMVVGCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--I--  211 (275)
Q Consensus       138 ~~p~~~V~viI~~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~--  211 (275)
                      ..+..++.+++.+++  +|||++|...+..|.|++|||++|+|||+++||+||++||||+++...++++.+.+..  .  
T Consensus         7 ~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   86 (161)
T 3exq_A            7 QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQH   86 (161)
T ss_dssp             CCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCSS
T ss_pred             CCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCCe
Confidence            345567777776655  9999999866667889999999999999999999999999999999988888776543  2  


Q ss_pred             CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          212 GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      ...+++|.+....+++. .+|..+++|+++++++...+. +..+.+++   .+++
T Consensus        87 ~~~~~~~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~  136 (161)
T 3exq_A           87 RKLGLLYRASNFTGTLK-ASAEGQLSWLPITALTRENSA-ASLPEFLQ---VFTG  136 (161)
T ss_dssp             EEEEEEEEECCEESCCC-GGGTTTEEEECGGGCCTTTBC-TTHHHHHH---HHTT
T ss_pred             EEEEEEEEEeccCCccC-CCccceEEEeeHHHhhhCccC-hHHHHHHH---HHhh
Confidence            35556777776555543 356678999999999965544 44444444   6655

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.79  E-value=3.1e-19  Score=152.60  Aligned_cols=121  Identities=21%  Similarity=0.301  Sum_probs=92.5

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CC-----E
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IG-----Q  213 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~-----~  213 (275)
                      ..++++++.++++|||++|.   ..|.|.+|||++|+||++++||+||++||||+++...++++.+.+..  ..     .
T Consensus         4 ~~v~~~vi~~~~~vLL~~r~---~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   80 (188)
T 3fk9_A            4 QRVTNCIVVDHDQVLLLQKP---RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEW   80 (188)
T ss_dssp             CEEEEEEEEETTEEEEEECT---TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEECCEEEEEEeC---CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEE
Confidence            45667777788999999986   47899999999999999999999999999999999888877765432  11     2


Q ss_pred             EEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      .+++|.+....+++....|..+++|+++++++...+. +..+..+.   .+++..
T Consensus        81 ~~~~f~a~~~~~~~~~~~e~~~~~W~~~~el~~~~l~-~~~~~~l~---~~l~~~  131 (188)
T 3fk9_A           81 MLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMA-AGDKWIFK---HVLHSD  131 (188)
T ss_dssp             EEEEEEESCEESCCCSEETTEEEEEEEGGGGGGSCCC-HHHHHHHH---HHTTCC
T ss_pred             EEEEEEEECCCCCCcCCCCCEeEEEEEHHHhhhCCCC-HHHHHHHH---HHHcCC
Confidence            5677888766666555555578999999999865543 44444444   666653

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.79  E-value=4.2e-19  Score=145.31  Aligned_cols=126  Identities=22%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             ccCCcEEEEEEEeeCCe----EEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--
Q 023914          137 YQNPKMVVGCLIEHDKK----ILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--  210 (275)
Q Consensus       137 y~~p~~~V~viI~~~~~----iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--  210 (275)
                      ++.+..++++++.++++    +||++|...+..| |.+|||++|+|||+++||+||++||||+++....+++...+..  
T Consensus         4 ~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            4 SQLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             GGCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             CcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            45567778888888888    9999988665456 9999999999999999999999999999999888888766543  


Q ss_pred             -CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          211 -IGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       211 -~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                       .+..+++|.+....+++.. .|..+++|+++++++...+. +..+.+++   .+.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~~  136 (155)
T 2b06_A           83 GGRYIVICYKATEFSGTLQS-SEEGEVSWVQKDQIPNLNLA-YDMLPLME---MMEAPD  136 (155)
T ss_dssp             SCEEEEEEEEECEEEECCCC-BTTBEEEEEEGGGGGGSCBC-TTHHHHHH---HHHCTT
T ss_pred             CceEEEEEEEEEecCCCCCC-CcceeeEEeeHHHhhhCCCC-hhHHHHHH---HHhCCC
Confidence             3456677877765554433 67789999999999965544 33444333   666543

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.78  E-value=9.4e-19  Score=141.09  Aligned_cols=114  Identities=19%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             EEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee--eEEEE--eCCCCEEEEEE
Q 023914          144 VGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--FAQLD--IPRIGQIYIIF  218 (275)
Q Consensus       144 V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~--~~~~~--~~~~~~~~~~f  218 (275)
                      ++++++++++|||++|... +.+|.|++|||++|.||++++||+||++||||+.+....+  +....  ++..+..+++|
T Consensus        12 ~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (144)
T 3r03_A           12 AAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLY   91 (144)
T ss_dssp             EEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEE
Confidence            3444456789999999854 3579999999999999999999999999999999877643  33233  34445667788


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      .+....+++. .+|..+++|+++++++...+. +..+..++
T Consensus        92 ~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~  130 (144)
T 3r03_A           92 ACRSWRGRAT-AREGQTLAWVRAERLREYPMP-PADLPLIP  130 (144)
T ss_dssp             EECCCBSCCC-CCSSCEEEEECGGGGGGSCCC-TTTTTHHH
T ss_pred             EEEecCCccC-CCCcceEEEEeHHHhccCCCC-cchHHHHH
Confidence            8877665433 467889999999999965443 44444444

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.78  E-value=1.8e-18  Score=138.56  Aligned_cols=123  Identities=23%  Similarity=0.198  Sum_probs=91.3

Q ss_pred             cEEEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEE
Q 023914          141 KMVVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYII  217 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~  217 (275)
                      ..++++++.++++|||++|... ..+|.|++|||++|+||++++||+||++||||+.+....+++.+.+.+.  +..+++
T Consensus         9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   88 (140)
T 2rrk_A            9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHA   88 (140)
T ss_dssp             EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEE
Confidence            3455566678899999999654 3479999999999999999999999999999999988888887654433  345567


Q ss_pred             EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      |.+....+++. .+|..+++|++++++....+. +....+++   .+++.+
T Consensus        89 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~-~~~~~~l~---~~~~~r  134 (140)
T 2rrk_A           89 WHVPDFHGTLQ-AHEHQALVWCSPEEALQYPLA-PADIPLLE---AFMALR  134 (140)
T ss_dssp             EEESEEEECCC-CSSCSCEEEECHHHHTTSCCC-TTHHHHHH---HHHHHH
T ss_pred             EEEEeeCCCcC-CCccceeEEeCHHHHhhCCCC-hhHHHHHH---HHHHHh
Confidence            77766544332 367788999999999864443 34444444   666553

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.78  E-value=1e-18  Score=141.13  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             cccCCcEEEEEEEee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEE-----
Q 023914          136 AYQNPKMVVGCLIEH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD-----  207 (275)
Q Consensus       136 ~y~~p~~~V~viI~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~-----  207 (275)
                      .|+++..+.+++++. ++++||++|...  +|.|.+|||++|+||++++||+||++||||+++...  .+++...     
T Consensus         5 ~~~~~~~v~~~i~~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   82 (150)
T 2o1c_A            5 VYKRPVSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFE   82 (150)
T ss_dssp             CCBCSEEEEEEEEETTTCEEEEEECSSS--TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEE
T ss_pred             cccCceEEEEEEEeCCCCEEEEEEecCC--CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeee
Confidence            466665555555555 489999998754  589999999999999999999999999999998763  3444321     


Q ss_pred             --------eC--CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          208 --------IP--RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       208 --------~~--~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                              ++  ..+..+++|.+....+.....+|..+++|++++++.... .++..+.+++   .+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~-~~~~~~~~l~---~~~~  147 (150)
T 2o1c_A           83 IFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALT-KSWSNRQAIE---QFVI  147 (150)
T ss_dssp             CCGGGGGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHC-SCHHHHHHHH---HHTT
T ss_pred             eecccccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhhh-cCHHHHHHHH---HHHH
Confidence                    12  123667788888876554344788999999999998432 3445555444   6654

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.78  E-value=9.8e-19  Score=142.37  Aligned_cols=115  Identities=22%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEE-----EeC--C-CCEEEEEEE
Q 023914          150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQL-----DIP--R-IGQIYIIFL  219 (275)
Q Consensus       150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~-----~~~--~-~~~~~~~f~  219 (275)
                      .+++|||++|..   .|.|.+|||++|+|||+++||+||++||||+++...  .+....     .+.  . .....++|.
T Consensus        18 ~~~~vLl~~r~~---~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   94 (149)
T 3son_A           18 ANYQFGVLHRTD---ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFA   94 (149)
T ss_dssp             SSEEEEEEEESS---SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEE
T ss_pred             CCeEEEEEEEcC---CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEE
Confidence            457899999984   489999999999999999999999999999998764  222211     122  1 234567889


Q ss_pred             EEEc--CCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          220 AKLK--RPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       220 a~~~--~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      +...  .+++.+++|..+++|++++++... ..++..+.++..+.++++.+
T Consensus        95 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-~~~~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A           95 IDLTSCSYQVTLSLEHSELRWVSYESAIQL-LEWDSNKTALYELNERLKNN  144 (149)
T ss_dssp             EECTTTGGGCCCCTTEEEEEEECHHHHHHH-CCCHHHHHHHHHHHHHHHTT
T ss_pred             EEcCCCCCcccCCCceeeEEEeCHHHHHHH-hcCHHHHHHHHHHHHHHhhc
Confidence            9887  445666689999999999998853 34677778787676776654

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.78  E-value=4.8e-18  Score=153.76  Aligned_cols=132  Identities=23%  Similarity=0.395  Sum_probs=100.7

Q ss_pred             ecCCCCCccccCCcEEEEEEEe--eC----CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccc--
Q 023914          128 ICTVCGKIAYQNPKMVVGCLIE--HD----KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV--  199 (275)
Q Consensus       128 ~C~~Cg~~~y~~p~~~V~viI~--~~----~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~--  199 (275)
                      .+..|....|++|.++|.++|.  ++    ++|||++|...|..|.|.+|||++|+|||+++||+||++||||+++..  
T Consensus        26 ~~~~~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~  105 (273)
T 2fml_A           26 WYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN  105 (273)
T ss_dssp             HHTTSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG
T ss_pred             hhhhhhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCc
Confidence            3456777789999988877764  23    389999999877789999999999999999999999999999987654  


Q ss_pred             ceeeEEEEeCC----CCEEEEEEEEEEcCCCCCCCCCceeEEEecCCC-----------------------CCCCCCCCc
Q 023914          200 QSPFAQLDIPR----IGQIYIIFLAKLKRPHFSPGPESSECRLFALDE-----------------------IPFDSLAFS  252 (275)
Q Consensus       200 ~~~~~~~~~~~----~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~de-----------------------L~~~~l~~~  252 (275)
                      +..++.+..+.    .+...++|.+.+..+....++|..+++|+++++                       ++...++|+
T Consensus       106 l~~l~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd  185 (273)
T 2fml_A          106 IEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD  185 (273)
T ss_dssp             EEEEEEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred             EEEEEEEcCCCCCCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence            44455554333    246778898887665544558889999999996                       333467888


Q ss_pred             HHHHHHH
Q 023914          253 SISVTLQ  259 (275)
Q Consensus       253 s~~~al~  259 (275)
                      +..+...
T Consensus       186 H~~Il~~  192 (273)
T 2fml_A          186 HSEIIIK  192 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8765444

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.77  E-value=4.2e-18  Score=139.47  Aligned_cols=108  Identities=23%  Similarity=0.341  Sum_probs=85.9

Q ss_pred             CCcEEEEEEEe-eCCeEEEEEeccC----CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CC-
Q 023914          139 NPKMVVGCLIE-HDKKILLCKRKIE----PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PR-  210 (275)
Q Consensus       139 ~p~~~V~viI~-~~~~iLL~rr~~~----p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~-  210 (275)
                      ....++.+++. +++++||++|...    ...|.|++|||++|+||++++||+||++||||+++....+++.+..  +. 
T Consensus        11 ~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           11 VELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             eEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            33455555554 5789999999852    2468999999999999999999999999999999998888887764  33 


Q ss_pred             CCEEEEEEEEEEcCCC-CCC--CCCceeEEEecCCCCCC
Q 023914          211 IGQIYIIFLAKLKRPH-FSP--GPESSECRLFALDEIPF  246 (275)
Q Consensus       211 ~~~~~~~f~a~~~~~e-~~~--~~E~~d~~W~~~deL~~  246 (275)
                      .+..+++|.+....++ +..  ++|..+++|++++++..
T Consensus        91 ~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  129 (159)
T 1sjy_A           91 VLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQ  129 (159)
T ss_dssp             CEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHH
T ss_pred             ceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHH
Confidence            3456778888887665 554  47889999999999863

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.77  E-value=2.6e-18  Score=141.36  Aligned_cols=115  Identities=20%  Similarity=0.326  Sum_probs=85.3

Q ss_pred             EEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee--eEEEE--eCCCCEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--FAQLD--IPRIGQIYII  217 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~--~~~~~--~~~~~~~~~~  217 (275)
                      +++++++++++|||++|... +.+|.|++|||++|+||++++||+||++||||+.+....+  ++...  ++..+..+++
T Consensus        32 ~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (158)
T 3hhj_A           32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPL  111 (158)
T ss_dssp             EEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEE
T ss_pred             EEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEE
Confidence            34445566889999999853 3579999999999999999999999999999999987654  44333  3444566677


Q ss_pred             EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      |.+....+.+. .+|..+++|++++++....+ ++..+.+++
T Consensus       112 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~-~~~~~~il~  151 (158)
T 3hhj_A          112 YFCSHYKGVAQ-GREGQNLKWIFINDLDKYPM-PEADKPLVQ  151 (158)
T ss_dssp             EEESCCBSCCC-CTTSCEEEEEEGGGGGGSCC-CTTTHHHHH
T ss_pred             EEEEECCCccC-CccccceEEEcHHHHhhCCC-CcchHHHHH
Confidence            88776655433 37788999999999986544 344444444

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.76  E-value=1e-18  Score=143.02  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCC----EE
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG----QI  214 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~----~~  214 (275)
                      ..++.+++.++++|||++|     .|.|.+|||++|+||++++||+||++||||+++...++++....  +..+    ..
T Consensus        19 ~~~~~~ii~~~~~vLl~~r-----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (154)
T 2pqv_A           19 GVRATALIVQNHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNI   93 (154)
T ss_dssp             EEEEEECCEETTEEEEEEE-----TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEECCEEEEEec-----CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEE
Confidence            3456666677899999998     47899999999999999999999999999999988777665442  2222    34


Q ss_pred             EEEEEEEEcCCCCC---CCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          215 YIIFLAKLKRPHFS---PGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       215 ~~~f~a~~~~~e~~---~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      .++|.+....+...   .++|..+++|+++++++...+.++..+..+.   .|.+.
T Consensus        94 ~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~---~~~~~  146 (154)
T 2pqv_A           94 EFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALP---DWEGQ  146 (154)
T ss_dssp             EEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEESTTHHHHTT---TCCSS
T ss_pred             EEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcHHHHHHhh---hhhhC
Confidence            45788887665432   3467889999999999976555555544333   55544

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.76  E-value=8.2e-19  Score=147.98  Aligned_cols=131  Identities=21%  Similarity=0.207  Sum_probs=95.7

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIY  215 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~  215 (275)
                      ++..++++++++++++||++|...+ .+|.|++|||++|+|||+++||+||++||||+++..+.+++.+....  .+..+
T Consensus        40 ~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  119 (182)
T 2yvp_A           40 PVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVF  119 (182)
T ss_dssp             SCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEE
T ss_pred             cCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEE
Confidence            4445555555678999999987654 36899999999999999999999999999999998888777653322  23566


Q ss_pred             EEEEEEEcC--CCCC-CCCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhcc
Q 023914          216 IIFLAKLKR--PHFS-PGPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       216 ~~f~a~~~~--~e~~-~~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~~  269 (275)
                      ++|.+....  +++. ..+|..+++|++++++..    ..+.......++.+++.|+++++
T Consensus       120 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~al~~~~~~~~~~~  180 (182)
T 2yvp_A          120 HPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHLKRLG  180 (182)
T ss_dssp             EEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHcCCcCChHHHHHHHHHHHHHHHhc
Confidence            777776432  3333 347889999999999763    34444445566677777777654

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.76  E-value=8.8e-19  Score=138.30  Aligned_cols=106  Identities=20%  Similarity=0.278  Sum_probs=83.2

Q ss_pred             EEEEEEeeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEEE
Q 023914          143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIFL  219 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f~  219 (275)
                      ++++++++++++||++|... +.+|.|++|||++|+||++++||.||++||||+.+....+++...+.+.+  ..+++|.
T Consensus         7 ~~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
T 1mut_A            7 AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWL   86 (129)
T ss_dssp             CCEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEE
T ss_pred             EEEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEE
Confidence            44555678899999998865 35799999999999999999999999999999999877777665544433  3456788


Q ss_pred             EEEcCCCCCCCCCceeEEEecCCCCCCCCC
Q 023914          220 AKLKRPHFSPGPESSECRLFALDEIPFDSL  249 (275)
Q Consensus       220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l  249 (275)
                      +....+.+. .+|..+++|++++++....+
T Consensus        87 ~~~~~~~~~-~~e~~~~~W~~~~el~~~~~  115 (129)
T 1mut_A           87 VERWEGEPW-GKEGQPGEWMSLVGLNADDF  115 (129)
T ss_dssp             EEECSSCCC-CCSSCCCEEEESSSCCTTTS
T ss_pred             EEccCCccC-CcccceeEEeCHHHcccccC
Confidence            887655432 46778899999999996443

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.75  E-value=1.9e-18  Score=139.76  Aligned_cols=117  Identities=19%  Similarity=0.190  Sum_probs=84.8

Q ss_pred             EEEEEEE-ee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE---eC-CC----
Q 023914          142 MVVGCLI-EH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IP-RI----  211 (275)
Q Consensus       142 ~~V~viI-~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~---~~-~~----  211 (275)
                      ..+.+++ ++ +++|||++|.    .|.|++|||++|+||++++||+||++||||+++....+++.+.   ++ ..    
T Consensus        19 ~~~~~vi~~~~~~~vLl~~r~----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   94 (148)
T 2azw_A           19 YAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAY   94 (148)
T ss_dssp             CEEEEECEEGGGTEEEEEECT----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEECCCCCeEEEEEcC----CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcce
Confidence            3444444 44 5899999974    4899999999999999999999999999999998888777643   22 11    


Q ss_pred             CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          212 GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       212 ~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      +..+++|.+....+.....+|..+++|+++++++.. +.++..+.+++   ++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~-~~~~~~~~~l~---~~~~  145 (148)
T 2azw_A           95 YNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRL-LKRGSHRWAVE---KWLA  145 (148)
T ss_dssp             EEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHH-BSCHHHHHHHH---HHHH
T ss_pred             EEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhh-hcchhHHHHHH---HHHH
Confidence            234567888876554445577889999999999842 33455555444   7764

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.75  E-value=1.2e-17  Score=144.06  Aligned_cols=133  Identities=20%  Similarity=0.144  Sum_probs=92.4

Q ss_pred             cCCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeC--CCCEE
Q 023914          138 QNPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIP--RIGQI  214 (275)
Q Consensus       138 ~~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~--~~~~~  214 (275)
                      +++..+++++++++ +|||++|.+.+ .++.|++|||++|+||++++||+||++||||+++..+.+++.+...  ..+..
T Consensus        47 ~~~~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  125 (198)
T 1vhz_A           47 TNREAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSK  125 (198)
T ss_dssp             CCCCEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCE
T ss_pred             CCCCEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcE
Confidence            34444444434444 99999987554 3678999999999999999999999999999999988888876532  22456


Q ss_pred             EEEEEEEEcCC-CCCC-CCCceeEEEecCCCCCCC----CCCCcHHHHHHHHHHHHHhhcccc
Q 023914          215 YIIFLAKLKRP-HFSP-GPESSECRLFALDEIPFD----SLAFSSISVTLQLVRFYFEHMTLI  271 (275)
Q Consensus       215 ~~~f~a~~~~~-e~~~-~~E~~d~~W~~~deL~~~----~l~~~s~~~al~li~~~l~~~~~i  271 (275)
                      +++|.+....+ .... ++|..++.|+++++++..    .+.......++.+...+++.+.++
T Consensus       126 ~~~f~a~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~~~~~al~~~~~~~~~~~~~  188 (198)
T 1vhz_A          126 MNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV  188 (198)
T ss_dssp             EEEEEEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTTC-
T ss_pred             EEEEEEEeCCcccCCCCCCceEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcccccc
Confidence            67788775443 2333 478889999999998742    233333445555555666655443

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.75  E-value=6.6e-18  Score=141.81  Aligned_cols=123  Identities=18%  Similarity=0.116  Sum_probs=89.0

Q ss_pred             EEEEE-EeeCCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEE
Q 023914          143 VVGCL-IEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYI  216 (275)
Q Consensus       143 ~V~vi-I~~~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~  216 (275)
                      ++.++ ++.+++|||++|....  .+|.|++ |||++|+|||+++||+||++||||+++..+..++.+.+...  +..++
T Consensus        39 ~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  118 (180)
T 2fkb_A           39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA  118 (180)
T ss_dssp             EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEEE
Confidence            44444 4567899999987543  3689999 99999999999999999999999999888888777654333  34566


Q ss_pred             EEEEEEcCCCCCC-CCCceeEEEecCCCCCCC--CCCCcHHHHHHHHHHHHHhhccc
Q 023914          217 IFLAKLKRPHFSP-GPESSECRLFALDEIPFD--SLAFSSISVTLQLVRFYFEHMTL  270 (275)
Q Consensus       217 ~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~--~l~~~s~~~al~li~~~l~~~~~  270 (275)
                      +|.+.. .+++.. .+|..+++|+++++++..  .+. +....++   ..|+..+..
T Consensus       119 ~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~-~~~~~~l---~~~~~~~~~  170 (180)
T 2fkb_A          119 LFSCVS-HGPFALQEDEVSEVCWLTPEEITARCDEFT-PDSLKAL---ALWMKRNAK  170 (180)
T ss_dssp             EEEEEC-CCCCCCCTTTEEEEEEECHHHHHTTGGGBC-HHHHHHH---HHHHHHC--
T ss_pred             EEEEec-CCCcCCChhHhheEEEecHHHHHHHHHHhC-CcHHHHH---HHHHHhhcC
Confidence            787773 444444 478899999999999854  222 3444444   477766543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.74  E-value=4.6e-18  Score=142.04  Aligned_cols=104  Identities=18%  Similarity=0.169  Sum_probs=76.0

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC--CCEEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR--IGQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~--~~~~~~~f  218 (275)
                      .+|.+++.+++++||++|.+.+ .+|.|++|||++|+|||+++||+||++||||+ +..+.+++.+....  .+..+++|
T Consensus        35 ~~v~vii~~~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~~f  113 (170)
T 1v8y_A           35 PAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTHVF  113 (170)
T ss_dssp             CEEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEEEE
T ss_pred             CeEEEEEEECCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEEEE
Confidence            4454444449999999987654 47899999999999999999999999999999 88888887764322  23566678


Q ss_pred             EEEEcC-CCCC-CCCCceeEEEecCCCCCC
Q 023914          219 LAKLKR-PHFS-PGPESSECRLFALDEIPF  246 (275)
Q Consensus       219 ~a~~~~-~e~~-~~~E~~d~~W~~~deL~~  246 (275)
                      .+.... .... .++|..+++|++++++..
T Consensus       114 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  143 (170)
T 1v8y_A          114 LAENLKEVEAHPDEDEAIEVVWMRPEEALE  143 (170)
T ss_dssp             EEEEEEECC--------CEEEEECHHHHHH
T ss_pred             EEEeccccCCCCCCCceEEEEEEEHHHHHH
Confidence            777654 3333 247888999999999764

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.73  E-value=5.5e-18  Score=139.64  Aligned_cols=108  Identities=24%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             EEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE-----------------
Q 023914          143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ-----------------  205 (275)
Q Consensus       143 ~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~-----------------  205 (275)
                      ++.+++.++++|||++|..   .|.|.+|||++|+|||+++||+||++||||+++.....++.                 
T Consensus         3 ~~~~vi~~~~~vLL~~r~~---~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T 1k2e_A            3 VTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILE   79 (156)
T ss_dssp             EEEEECEETTEEEEEECTT---TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEE
T ss_pred             EEEEEEEECCEEEEEEEcC---CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccceeee
Confidence            4555666699999999873   68999999999999999999999999999999876655321                 


Q ss_pred             --EEeCCCC--EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHH
Q 023914          206 --LDIPRIG--QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQL  260 (275)
Q Consensus       206 --~~~~~~~--~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~l  260 (275)
                        ..++...  ...++|.+...+      +|..+++|+++++++...+ ++..+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~f~~~~~~------~e~~~~~W~~~~el~~~~~-~~~~~~~l~~  131 (156)
T 1k2e_A           80 EVVKYPEETHIHFDLIYLVKRVG------GDLKNGEWIDVREIDRIET-FPNVRKVVSL  131 (156)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEE------ECCCSCEEEEGGGGGGSCB-STTHHHHHHH
T ss_pred             eeecCCCCceEEEEEEEEEEecC------CcEeeeEEeCHHHHhcCCC-ChHHHHHHHH
Confidence              1122211  223457666533      3567899999999986544 3555555553

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.73  E-value=2.2e-17  Score=141.89  Aligned_cols=112  Identities=21%  Similarity=0.342  Sum_probs=76.6

Q ss_pred             cccCCcEEEEEEEe--eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE---eCC
Q 023914          136 AYQNPKMVVGCLIE--HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD---IPR  210 (275)
Q Consensus       136 ~y~~p~~~V~viI~--~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~---~~~  210 (275)
                      .++++.++|.+++.  ++++|||++|+.. ..|.|.+|||++|+||++++||+||++||||+++....+++...   .+.
T Consensus        21 ~~~~~~v~v~~~v~~~~~~~vLL~~r~~~-~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~   99 (199)
T 3h95_A           21 QSMSHQVGVAGAVFDESTRKILVVQDRNK-LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPG   99 (199)
T ss_dssp             -----CCEEEEEEEETTTTEEEEEEESSS-STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC----
T ss_pred             ccCcccceEEEEEEeCCCCEEEEEEEcCC-CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCC
Confidence            34556666655443  3589999998753 47999999999999999999999999999999998777777432   222


Q ss_pred             C-CEEEEEEEEEEcC--CCCCC-CCCceeEEEecCCCCCCCC
Q 023914          211 I-GQIYIIFLAKLKR--PHFSP-GPESSECRLFALDEIPFDS  248 (275)
Q Consensus       211 ~-~~~~~~f~a~~~~--~e~~~-~~E~~d~~W~~~deL~~~~  248 (275)
                      . ....++|.+.+..  .+..+ .+|..+++|+++++++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~  141 (199)
T 3h95_A          100 AFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTE  141 (199)
T ss_dssp             -----CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCS
T ss_pred             CceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhh
Confidence            1 1223445555443  33343 4889999999999998543

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.72  E-value=3.3e-17  Score=140.42  Aligned_cols=122  Identities=13%  Similarity=0.147  Sum_probs=78.5

Q ss_pred             EEEEEEeeC-CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCc-cccce----eeEEEEeCC------
Q 023914          143 VVGCLIEHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARAD-VEVQS----PFAQLDIPR------  210 (275)
Q Consensus       143 ~V~viI~~~-~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~-v~~~~----~~~~~~~~~------  210 (275)
                      +.+++++.+ ++|||++|+   ..|.|.+|||++|+|||+++||+||++||||++ +....    .+.....+.      
T Consensus        48 ~~~vv~~~~~~~vLL~~r~---~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (197)
T 3fcm_A           48 SSAFAVNKERNKFLMIHHN---IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGK  124 (197)
T ss_dssp             EEEEEECTTSCEEEEEEET---TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTE
T ss_pred             EEEEEEECCCCEEEEEEec---CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCc
Confidence            334444444 499999987   468999999999999999999999999999998 54321    122222211      


Q ss_pred             ----CCEEEEEEEEEEcCCC-CCCC-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          211 ----IGQIYIIFLAKLKRPH-FSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       211 ----~~~~~~~f~a~~~~~e-~~~~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                          .....+.|.+....+. +..+ +|..+++|+++++++.. +..+....+++.+.++++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~-~~~~~~~~il~~~~~~l~~~  187 (197)
T 3fcm_A          125 YVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKY-CSEPHMIPIYEKLINKLKTQ  187 (197)
T ss_dssp             EECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHH-CCCGGGHHHHHHHHHHHHC-
T ss_pred             ccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhh-cCCHHHHHHHHHHHHHHHhc
Confidence                1123366777766544 4443 78899999999998853 34566666666454555543

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.9e-17  Score=134.13  Aligned_cols=127  Identities=23%  Similarity=0.304  Sum_probs=83.5

Q ss_pred             EEEEEE-eeC-CeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE-EeCCCCEEEEEEE
Q 023914          143 VVGCLI-EHD-KKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL-DIPRIGQIYIIFL  219 (275)
Q Consensus       143 ~V~viI-~~~-~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~-~~~~~~~~~~~f~  219 (275)
                      ++++++ +++ ++|||++|.   ..|.|.+|||++|+|||+++||+||++||||+++.....+..+ .....+..+.+|.
T Consensus         6 ~~~~~i~~~~~~~vLl~~r~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (146)
T 2jvb_A            6 VRGAAIFNENLSKILLVQGT---ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFL   82 (146)
T ss_dssp             CEEEEEBCTTSSEEEEECCS---SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEEEc---CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEEE
Confidence            344444 443 899999976   3689999999999999999999999999999998754332221 2222334455555


Q ss_pred             EEEcCC--C--CCCCCCceeEEEecCCCCCCCC----CCCcHHHHHHHHHHHHHhhccccc
Q 023914          220 AKLKRP--H--FSPGPESSECRLFALDEIPFDS----LAFSSISVTLQLVRFYFEHMTLIC  272 (275)
Q Consensus       220 a~~~~~--e--~~~~~E~~d~~W~~~deL~~~~----l~~~s~~~al~li~~~l~~~~~i~  272 (275)
                      +.....  .  ...++|..+++|+++++++...    +..--....+..+..|+..++++.
T Consensus        83 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  143 (146)
T 2jvb_A           83 ISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQRQIK  143 (146)
T ss_dssp             ECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeccccccCCcCCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHHHHHhhCCC
Confidence            543221  2  2235788999999999987521    111122334556668888766543

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.70  E-value=1.6e-17  Score=138.31  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=79.8

Q ss_pred             cEEEEEE-EeeCCeEEEEEeccCC--CCCcee-eeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEE-eCCC-C
Q 023914          141 KMVVGCL-IEHDKKILLCKRKIEP--SYGLWT-LPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLD-IPRI-G  212 (275)
Q Consensus       141 ~~~V~vi-I~~~~~iLL~rr~~~p--~~g~w~-lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~-~~~~-~  212 (275)
                      ..++.++ ++.++++||++|...+  .+|.|+ +|||++|+|||+++||+||++||||+++...  .+++.+. ++.. .
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            4455444 4578899999986543  278998 9999999999999999999999999998774  4555554 4332 2


Q ss_pred             EEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCC
Q 023914          213 QIYIIFLAKLKRPHFSPG-PESSECRLFALDEIP  245 (275)
Q Consensus       213 ~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~  245 (275)
                      ..+++|.+.. .+++.++ +|..+++|+++++++
T Consensus       114 ~~~~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~  146 (171)
T 1q27_A          114 SFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL  146 (171)
T ss_dssp             SEEEEEEEEC-CCCCCSCTTTCSCCEEECHHHHH
T ss_pred             cEEEEEEEEE-CCccccCchhhheEEEecHHHHH
Confidence            3667788887 5555543 788899999999987

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.70  E-value=7.3e-18  Score=147.62  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC----CCCceee-eeEEeeCCCC------HHHHHHHHHHHHhCCccccceeeEEEEeCC
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP----SYGLWTL-PAGYMEIGES------AAEGAIRETWEEARADVEVQSPFAQLDIPR  210 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p----~~g~w~l-PgG~vE~GEs------~eeAa~REl~EEtGl~v~~~~~~~~~~~~~  210 (275)
                      ++..+++.+++++||++|...+    ..|.|++ |||+||+|||      +++||+||++||||+++....+++...+..
T Consensus        69 ~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~  148 (211)
T 3e57_A           69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSST  148 (211)
T ss_dssp             EEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCS
T ss_pred             eEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccC
Confidence            4455677889999999998664    2478999 9999999999      499999999999999999999999887643


Q ss_pred             C----CEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCc-HHHHHHHHHHHHHhh
Q 023914          211 I----GQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFS-SISVTLQLVRFYFEH  267 (275)
Q Consensus       211 ~----~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~-s~~~al~li~~~l~~  267 (275)
                      .    ..+.++|.++...+++. ++|..+++|+++++|+...-.++ -...+++.|++|+..
T Consensus       149 ~~~~~~~l~~~f~~~~~~g~~~-~~E~~~~~W~~~~eL~~~~~~le~wS~lvl~~l~~~~~~  209 (211)
T 3e57_A          149 TEVSRVHLGALFLGRGKFFSVK-EKDLFEWELIKLEELEKFSGVMEGWSKISAAVLLNLFLT  209 (211)
T ss_dssp             SHHHHTEEEEEEEEEEEEEEES-CTTTCEEEEEEHHHHHHHGGGCCHHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEEEEEEEEeCCceeC-CCCeEEEEEEEHHHHHHhHhhccchhHHHHHHHHHHHhc
Confidence            2    13445788887755442 36677899999999985322343 334555666666543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.70  E-value=2e-17  Score=135.81  Aligned_cols=100  Identities=28%  Similarity=0.358  Sum_probs=72.4

Q ss_pred             EEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceee----EEEEeCC----------
Q 023914          145 GCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPF----AQLDIPR----------  210 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~----~~~~~~~----------  210 (275)
                      +++++.+++|||++|...  +|.|++|||++|+|||+++||+||++||||+++..+...    ..+.++.          
T Consensus        19 ~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (165)
T 1f3y_A           19 ICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQW   96 (165)
T ss_dssp             EEEECTTSCEEEEEETTE--EEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHGGGS
T ss_pred             EEEECCCCcEEEEecCCC--CCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccccccc
Confidence            345567889999999853  489999999999999999999999999999987543221    1111110          


Q ss_pred             ----CCEEEEEEEEEEcCCC--CCC------CCCceeEEEecCCCCCC
Q 023914          211 ----IGQIYIIFLAKLKRPH--FSP------GPESSECRLFALDEIPF  246 (275)
Q Consensus       211 ----~~~~~~~f~a~~~~~e--~~~------~~E~~d~~W~~~deL~~  246 (275)
                          .+...++|.+.+....  +..      .+|..+++|++++++..
T Consensus        97 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~  144 (165)
T 1f3y_A           97 GSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID  144 (165)
T ss_dssp             CSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHH
T ss_pred             cccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHH
Confidence                1224566777776542  332      46889999999999984

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.69  E-value=4.6e-17  Score=138.69  Aligned_cols=105  Identities=23%  Similarity=0.313  Sum_probs=80.3

Q ss_pred             EEEEEEEeeCC--eEEEEEeccC--CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEEE
Q 023914          142 MVVGCLIEHDK--KILLCKRKIE--PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQIY  215 (275)
Q Consensus       142 ~~V~viI~~~~--~iLL~rr~~~--p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~~  215 (275)
                      .++++++++++  +|||++|...  +..|.|++|||++|+||++++||+||++||||+++...++++.+..  ...+..+
T Consensus        36 ~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  115 (194)
T 1nqz_A           36 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV  115 (194)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred             EEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCCCeEE
Confidence            34444556667  8999998753  3478999999999999999999999999999999998888876542  2345667


Q ss_pred             EEEEEEEcCC-C-CC-CCCCceeEEEecCCCC-CC
Q 023914          216 IIFLAKLKRP-H-FS-PGPESSECRLFALDEI-PF  246 (275)
Q Consensus       216 ~~f~a~~~~~-e-~~-~~~E~~d~~W~~~deL-~~  246 (275)
                      ++|.+..... + .. .++|..+++|++++++ ..
T Consensus       116 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  150 (194)
T 1nqz_A          116 TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAV  150 (194)
T ss_dssp             EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             EEEEEEecCCccccCCCccceeEEEEEEHHHhccC
Confidence            7888887632 2 33 3478899999999999 54

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.69  E-value=1e-16  Score=145.07  Aligned_cols=109  Identities=22%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             ccCCcEEEEEEEee--CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-CCCCE
Q 023914          137 YQNPKMVVGCLIEH--DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-PRIGQ  213 (275)
Q Consensus       137 y~~p~~~V~viI~~--~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~~~~~  213 (275)
                      |.....++++++.+  +++|||++|...  +|.|++|||++|+|||+++||+||++||||+++..+..+..+.. ...+.
T Consensus        97 ~~~~v~~v~avv~~~~~~~vLLv~r~~~--~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~~~~~  174 (271)
T 2a6t_A           97 YKTRIPVRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQ  174 (271)
T ss_dssp             HSCCCCEEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTE
T ss_pred             cCCCCCeEEEEEEECCCCEEEEEEEeCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCCcCCc
Confidence            44444555555544  489999999754  58899999999999999999999999999999876543322221 12344


Q ss_pred             EEEEEEEEEcCC--CCC--CCCCceeEEEecCCCCCCC
Q 023914          214 IYIIFLAKLKRP--HFS--PGPESSECRLFALDEIPFD  247 (275)
Q Consensus       214 ~~~~f~a~~~~~--e~~--~~~E~~d~~W~~~deL~~~  247 (275)
                      .+.+|.+.....  ...  ..+|+.+++|+++++++..
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  212 (271)
T 2a6t_A          175 NVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF  212 (271)
T ss_dssp             EEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTC
T ss_pred             eEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHH
Confidence            566677765432  222  3478899999999999853

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.68  E-value=4.1e-17  Score=141.24  Aligned_cols=108  Identities=20%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEee-CCCCHHHHHHHHHHHHhCCccccceeeEEEE-eCCC-CEE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYME-IGESAAEGAIRETWEEARADVEVQSPFAQLD-IPRI-GQI  214 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE-~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~~~-~~~  214 (275)
                      ++..+++++++++++|||++|.+.+ ..|.|++|||++| +||++++||+||++||||+++....+++.+. .+.. ...
T Consensus        42 ~~~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  121 (207)
T 1mk1_A           42 HFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDES  121 (207)
T ss_dssp             ECCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCC
T ss_pred             CCCEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccE
Confidence            4445555555678999999988665 4679999999999 9999999999999999999998888777652 2222 225


Q ss_pred             EEEEEEEEcCCCCC---C-CCCceeEEEecCCCCCC
Q 023914          215 YIIFLAKLKRPHFS---P-GPESSECRLFALDEIPF  246 (275)
Q Consensus       215 ~~~f~a~~~~~e~~---~-~~E~~d~~W~~~deL~~  246 (275)
                      +++|.+....+...   . ++|..++.|++++++..
T Consensus       122 ~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~  157 (207)
T 1mk1_A          122 VRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAAR  157 (207)
T ss_dssp             EEEEEEEEEEECCC----------CEEEEEHHHHHH
T ss_pred             EEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHH
Confidence            66777776543322   2 47788999999999864

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.68  E-value=5.3e-17  Score=138.05  Aligned_cols=101  Identities=19%  Similarity=0.339  Sum_probs=77.3

Q ss_pred             EEEEeeCCeEEEEEeccCC--CCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccc-eeeEEEEe----CCC---CE
Q 023914          145 GCLIEHDKKILLCKRKIEP--SYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQ-SPFAQLDI----PRI---GQ  213 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~p--~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~-~~~~~~~~----~~~---~~  213 (275)
                      +++++.++++||++|....  .+|.|++ |||++|+|||+++||+||++||||+++..+ .+++.+.+    +..   +.
T Consensus        37 ~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (190)
T 1hzt_A           37 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENE  116 (190)
T ss_dssp             EEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEE
T ss_pred             EEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCCcceE
Confidence            3444567899999987532  3699999 999999999999999999999999999887 66554432    222   34


Q ss_pred             EEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCC
Q 023914          214 IYIIFLAKLKRPHFSP-GPESSECRLFALDEIPF  246 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~  246 (275)
                      .+++|.+... +++.+ .+|..+++|+++++++.
T Consensus       117 ~~~~f~~~~~-~~~~~~~~E~~~~~W~~~~el~~  149 (190)
T 1hzt_A          117 VCPVFAARTT-SALQINDDEVMDYQWCDLADVLH  149 (190)
T ss_dssp             ECCEEEEEBC-SCCCCCTTTEEEEEEECHHHHHH
T ss_pred             EEEEEEEecC-CCCcCCccceeeEEEecHHHHHH
Confidence            4567888764 44444 47889999999999864

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.68  E-value=1e-16  Score=131.49  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             CCeEEEEEeccC-CCCCceeeeeEEeeCCCCHH-HHHHHHHHHHhC-CccccceeeEEEEeCCC--CEEEEEEEEEEcCC
Q 023914          151 DKKILLCKRKIE-PSYGLWTLPAGYMEIGESAA-EGAIRETWEEAR-ADVEVQSPFAQLDIPRI--GQIYIIFLAKLKRP  225 (275)
Q Consensus       151 ~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~e-eAa~REl~EEtG-l~v~~~~~~~~~~~~~~--~~~~~~f~a~~~~~  225 (275)
                      +++|||++|... ..+|+|+||||.+|+||+++ +|+.||++|||| +.+....+++...+.+.  ...+.+|.+....+
T Consensus        33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  112 (155)
T 1x51_A           33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ  112 (155)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred             CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC
Confidence            479999998754 34799999999999999997 999999999999 88877776665444333  34567788887655


Q ss_pred             CCCCCCCceeEEEecCCCCCCCCCCCcH-HHHHHHHHHHHHhhc
Q 023914          226 HFSPGPESSECRLFALDEIPFDSLAFSS-ISVTLQLVRFYFEHM  268 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~~~~l~~~s-~~~al~li~~~l~~~  268 (275)
                      ++. ..|..+++|++++++..  +.++. .+.   +++.+...+
T Consensus       113 ~~~-~~e~~~~~W~~~~el~~--~~~~~~~~~---~l~~~~~~~  150 (155)
T 1x51_A          113 TPV-TTVPPGARWLTQEEFHT--AAVSTAMKK---VFRVYQGQS  150 (155)
T ss_dssp             CCC-CCCCTTEEEEEHHHHHH--SCCCHHHHH---HHHHHHHTC
T ss_pred             CCC-CCCCCccEEccHHHhhh--cCCCHHHHH---HHHHHHhcc
Confidence            433 25667899999999984  44444 333   444666543

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.67  E-value=9.1e-17  Score=139.59  Aligned_cols=114  Identities=18%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             CCccccCCcEEEEEEEe-eCCeEEEEEeccCCC------CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE
Q 023914          133 GKIAYQNPKMVVGCLIE-HDKKILLCKRKIEPS------YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ  205 (275)
Q Consensus       133 g~~~y~~p~~~V~viI~-~~~~iLL~rr~~~p~------~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~  205 (275)
                      .+..+.++..+++++++ ++++|||+++.+.+.      ++.|++|||++|+||++++||+||++||||+.+..+.+++.
T Consensus        50 ~r~~~~~~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~  129 (209)
T 1g0s_A           50 RREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLS  129 (209)
T ss_dssp             EEEEEECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEE
Confidence            33455666666555566 478999998765542      47899999999999999999999999999999988888876


Q ss_pred             EEe-CCC-CEEEEEEEEEEcCC---C--CC-CCCCceeEEEecCCCCCC
Q 023914          206 LDI-PRI-GQIYIIFLAKLKRP---H--FS-PGPESSECRLFALDEIPF  246 (275)
Q Consensus       206 ~~~-~~~-~~~~~~f~a~~~~~---e--~~-~~~E~~d~~W~~~deL~~  246 (275)
                      +.. +.. +..+++|.+.....   .  .. .++|..++.|++++++..
T Consensus       130 ~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~  178 (209)
T 1g0s_A          130 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ  178 (209)
T ss_dssp             EESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred             EecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence            632 222 24667788886321   1  12 236778999999999763

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.67  E-value=1e-15  Score=127.69  Aligned_cols=103  Identities=25%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             cEEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE------eCC---
Q 023914          141 KMVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD------IPR---  210 (275)
Q Consensus       141 ~~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~------~~~---  210 (275)
                      .++|.+++ +.+++|||++|..   .|.|.+|||++|+|||+++||+||++||||+++...++++.+.      .+.   
T Consensus         8 ~~~v~~~i~~~~~~vLl~~r~~---~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~   84 (164)
T 2kdv_A            8 RPNVGIVICNRQGQVMWARRFG---QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLV   84 (164)
T ss_dssp             EEEEEEEEECTTSEEEEEEETT---CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTC
T ss_pred             CcEEEEEEEccCCEEEEEEEcC---CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCccee
Confidence            34454444 5678999999873   6899999999999999999999999999999998888777642      221   


Q ss_pred             --------CCEEEEEEEEEEcCCC--CCC----CCCceeEEEecCCCCCC
Q 023914          211 --------IGQIYIIFLAKLKRPH--FSP----GPESSECRLFALDEIPF  246 (275)
Q Consensus       211 --------~~~~~~~f~a~~~~~e--~~~----~~E~~d~~W~~~deL~~  246 (275)
                              .+...++|.+.+..++  +..    .+|+.+++|++.+++..
T Consensus        85 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~  134 (164)
T 2kdv_A           85 RWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR  134 (164)
T ss_dssp             CTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred             eeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence                    1235677888876543  332    35889999999999764

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.67  E-value=4e-17  Score=140.51  Aligned_cols=95  Identities=16%  Similarity=0.233  Sum_probs=74.8

Q ss_pred             eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEEEEEcCCC--C
Q 023914          150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFLAKLKRPH--F  227 (275)
Q Consensus       150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~e--~  227 (275)
                      .+++|||++|...  +|.|++|||++|+|||+++||+||++||||+++...++++.+.........++|.+.+....  .
T Consensus        52 ~~~~vLLv~r~~~--~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~  129 (194)
T 2fvv_A           52 SEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDW  129 (194)
T ss_dssp             TCCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSC
T ss_pred             CCCEEEEEEEeCC--CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCCCceEEEEEEEEEccccCCC
Confidence            3689999998754  47999999999999999999999999999999998888888877655666677777654321  1


Q ss_pred             CCC-CCceeEEEecCCCCCC
Q 023914          228 SPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       228 ~~~-~E~~d~~W~~~deL~~  246 (275)
                      ... ++..+++|+++++++.
T Consensus       130 ~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          130 EDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             HHHHHHCCCEEEEEHHHHHH
T ss_pred             CCcccccceEEEEEHHHHHH
Confidence            111 2336899999999863

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.67  E-value=1e-16  Score=137.26  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=82.3

Q ss_pred             ccccCCcEEEEEEEe-eCCeEEEEEeccCC-------CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEE
Q 023914          135 IAYQNPKMVVGCLIE-HDKKILLCKRKIEP-------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQL  206 (275)
Q Consensus       135 ~~y~~p~~~V~viI~-~~~~iLL~rr~~~p-------~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~  206 (275)
                      ..+.++..+++++++ +++++||+++.+.+       ..+.|++|||++| ||++++||+||++||||+++..+.+++.+
T Consensus        40 ~~~~~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~  118 (191)
T 3o6z_A           40 EVYDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL  118 (191)
T ss_dssp             EEEECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE
T ss_pred             EEEecCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE
Confidence            345566666665555 36899999987643       4678999999999 99999999999999999999888888875


Q ss_pred             Ee-C-CCCEEEEEEEEEEcCCC-----CCCCCCceeEEEecCCCCCC
Q 023914          207 DI-P-RIGQIYIIFLAKLKRPH-----FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       207 ~~-~-~~~~~~~~f~a~~~~~e-----~~~~~E~~d~~W~~~deL~~  246 (275)
                      .. + ..+..+++|.+......     ...++|..+++|++++++..
T Consensus       119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~  165 (191)
T 3o6z_A          119 YMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALE  165 (191)
T ss_dssp             ESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHH
T ss_pred             EeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHH
Confidence            43 2 23456778888875432     12257888999999999764

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.66  E-value=1.9e-16  Score=146.76  Aligned_cols=115  Identities=11%  Similarity=0.168  Sum_probs=98.1

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHh-CCccccceeeEEEEeCCCCEEEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA-RADVEVQSPFAQLDIPRIGQIYIIF  218 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEt-Gl~v~~~~~~~~~~~~~~~~~~~~f  218 (275)
                      |.++|++++.++++|||+     +..| |.+|||.+  ||+..++++||++||+ |++++...+++.++.+..+...++|
T Consensus       182 p~~~vgaii~~~g~vLL~-----~~~G-W~LPG~~~--~~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~~~~~i~f  253 (321)
T 3rh7_A          182 GEIRLGAVLEQQGAVFLA-----GNET-LSLPNCTV--EGGDPARTLAAYLEQLTGLNVTIGFLYSVYEDKSDGRQNIVY  253 (321)
T ss_dssp             SCEEEEEEEESSSCEEEB-----CSSE-EBCCEEEE--SSSCHHHHHHHHHHHHHSSCEEEEEEEEEEECTTTCCEEEEE
T ss_pred             CcceEEEEEEECCEEEEe-----eCCC-ccCCcccC--CCChhHHHHHHHHHHhcCCEEeeceEEEEEEcCCCceEEEEE
Confidence            678899999999999999     2468 99998755  5555569999999997 9999999999999988777788899


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcccc
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI  271 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~~i  271 (275)
                      .|+..+++      ..+++||+++|||+.++++++.+.+++   +|+++++.-
T Consensus       254 ~~~~~~g~------~~e~~~f~~~elp~~~~~~~~~~~~L~---~y~~e~~~g  297 (321)
T 3rh7_A          254 HALASDGA------PRQGRFLRPAELAAAKFSSSATADIIN---RFVLESSIG  297 (321)
T ss_dssp             EEEECSSC------CSSSEEECHHHHTTCEESSHHHHHHHH---HHHHTTSCS
T ss_pred             EEEeCCCC------eeeeEEECHHHCCCcccCCHHHHHHHH---HHHHHhhcC
Confidence            99987664      267999999999998888999988777   999987653

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.65  E-value=5.4e-16  Score=134.61  Aligned_cols=105  Identities=19%  Similarity=0.174  Sum_probs=75.5

Q ss_pred             cEEEEEEEeeC---CeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-eC-CCCEE
Q 023914          141 KMVVGCLIEHD---KKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-IP-RIGQI  214 (275)
Q Consensus       141 ~~~V~viI~~~---~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-~~-~~~~~  214 (275)
                      .++|++++.++   ++|||+++.+.+ .++.|++|||++|+||++++||+||++||||+.+....+++.+. .+ ..+..
T Consensus        63 av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  142 (212)
T 2dsc_A           63 GVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCT  142 (212)
T ss_dssp             EEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCE
T ss_pred             EEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCce
Confidence            34444445443   489999876554 35689999999999999999999999999999988777665442 22 22345


Q ss_pred             EEEEEEEEcCC-------CCCC-CCCceeEEEecCCCCC
Q 023914          215 YIIFLAKLKRP-------HFSP-GPESSECRLFALDEIP  245 (275)
Q Consensus       215 ~~~f~a~~~~~-------e~~~-~~E~~d~~W~~~deL~  245 (275)
                      ++.|.+.+...       ...+ ++|..++.|++++++.
T Consensus       143 ~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~  181 (212)
T 2dsc_A          143 IHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLL  181 (212)
T ss_dssp             EEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHH
T ss_pred             EEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHH
Confidence            56677765321       2233 3788899999999986

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.63  E-value=9.8e-16  Score=134.57  Aligned_cols=110  Identities=19%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             ccCCcEEEEEEEe-eCCeEEEEEeccCC-C-------------------------------CCceeeeeEEeeC-CCCHH
Q 023914          137 YQNPKMVVGCLIE-HDKKILLCKRKIEP-S-------------------------------YGLWTLPAGYMEI-GESAA  182 (275)
Q Consensus       137 y~~p~~~V~viI~-~~~~iLL~rr~~~p-~-------------------------------~g~w~lPgG~vE~-GEs~e  182 (275)
                      ..++..+++++++ .++++||+|+.+.+ .                               ++.|++|||++|+ |||++
T Consensus        33 v~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~  112 (218)
T 3q91_A           33 MKTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLE  112 (218)
T ss_dssp             --CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHH
T ss_pred             EEcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHH
Confidence            3344445444455 46899999976533 1                               5789999999999 99999


Q ss_pred             HHHHHHHHHHhCCcc--ccceeeEEEEe-C-CCCEEEEEEEEEEcCC------CCCC-CCCceeEEEecCCCCCC
Q 023914          183 EGAIRETWEEARADV--EVQSPFAQLDI-P-RIGQIYIIFLAKLKRP------HFSP-GPESSECRLFALDEIPF  246 (275)
Q Consensus       183 eAa~REl~EEtGl~v--~~~~~~~~~~~-~-~~~~~~~~f~a~~~~~------e~~~-~~E~~d~~W~~~deL~~  246 (275)
                      +||+||++||||+++  ..+..++.+.. + ..+..+++|.+.....      ...+ ++|..++.|++++++..
T Consensus       113 eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~  187 (218)
T 3q91_A          113 EVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQA  187 (218)
T ss_dssp             HHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHH
T ss_pred             HHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence            999999999999998  77777776543 2 3456778888887531      2223 37889999999999753

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.63  E-value=2.1e-16  Score=137.68  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCCccccce-----eeEE
Q 023914          132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEVQS-----PFAQ  205 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl~v~~~~-----~~~~  205 (275)
                      |....|.....++++++++++++||.+|.    .|.|++|||++|+|| |+++||+||++||||+.+....     +++.
T Consensus        36 ~~~~l~~~~~~vv~~i~~~~~~vLl~~r~----~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~  111 (212)
T 1u20_A           36 CHALLHAPSQAKLFDRVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSS  111 (212)
T ss_dssp             EEEEEEEECCCEETTTEECCEEEEEEEET----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEE
T ss_pred             ceEEEeCCCceEEEEEEecCCEEEEEEeC----CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEe
Confidence            44444544344444555677899999883    689999999999999 9999999999999999987553     5666


Q ss_pred             EEeCCC-CEEEEEEEEEEcCCCC----------C-CCCCceeEEEecCCCCCC
Q 023914          206 LDIPRI-GQIYIIFLAKLKRPHF----------S-PGPESSECRLFALDEIPF  246 (275)
Q Consensus       206 ~~~~~~-~~~~~~f~a~~~~~e~----------~-~~~E~~d~~W~~~deL~~  246 (275)
                      ....++ +..+++|.+....+++          . .++|..++.|++++++..
T Consensus       112 ~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~  164 (212)
T 1u20_A          112 QVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  164 (212)
T ss_dssp             EEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             ccccCCCcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhh
Confidence            555443 6777888888754322          1 236778899999999975

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.61  E-value=1.3e-15  Score=142.57  Aligned_cols=112  Identities=19%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC---------------CEEE
Q 023914          151 DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---------------GQIY  215 (275)
Q Consensus       151 ~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~---------------~~~~  215 (275)
                      +.+|||++|.   ..|.|++|||++|+|||+++||+||++||||+++....+++...+...               ...+
T Consensus        37 ~~~vLLv~r~---~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~  113 (364)
T 3fjy_A           37 SIEVCIVHRP---KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT  113 (364)
T ss_dssp             TEEEEEEEET---TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CE
T ss_pred             ceEEEEEEcC---CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEE
Confidence            4589999985   358999999999999999999999999999999988888886655332               3556


Q ss_pred             EEEEEEEcCCC------------CCC-CCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          216 IIFLAKLKRPH------------FSP-GPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       216 ~~f~a~~~~~e------------~~~-~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      ++|.+....++            ... .+|..+++|++++++.. .+.++..+.+++.+.++++
T Consensus       114 ~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~-~~~~~~~r~il~~~~~~l~  176 (364)
T 3fjy_A          114 LYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARK-ILSHSTDKDTLAVFVDRVQ  176 (364)
T ss_dssp             EEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHH-HCSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHH-HhcchhhHHHHHHHHHHhc
Confidence            67888876542            122 37889999999999874 3456777776665555554

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.60  E-value=2.3e-15  Score=141.66  Aligned_cols=110  Identities=18%  Similarity=0.238  Sum_probs=84.1

Q ss_pred             EEEEE-eeCCeEEEEEeccC-CCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--CEEEEEEE
Q 023914          144 VGCLI-EHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--GQIYIIFL  219 (275)
Q Consensus       144 V~viI-~~~~~iLL~rr~~~-p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~~~~~~f~  219 (275)
                      +++++ +++++|||+||... ..+|+|+||||.+|+| |+++|+.||++||+|+++....+++...+.+.  +..+.+|.
T Consensus       243 ~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~  321 (369)
T 3fsp_A          243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFP  321 (369)
T ss_dssp             EEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEE
Confidence            34444 46899999999864 3579999999999999 99999999999999999988888776655444  45667788


Q ss_pred             EEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          220 AKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       220 a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      +...++    .+|..+++|+++++++...+. +..+..++
T Consensus       322 ~~~~~~----~~e~~~~~Wv~~~el~~~~l~-~~~~~il~  356 (369)
T 3fsp_A          322 GRLVHG----GPVEEPYRLAPEDELKAYAFP-VSHQRVWR  356 (369)
T ss_dssp             EEECCS----SCCCTTEEEEEGGGGGGSCCC-HHHHHHHH
T ss_pred             EEEcCC----CCCccccEEeeHHHhhhCCCC-HHHHHHHH
Confidence            887553    357788999999999854332 33444444

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.58  E-value=2.5e-15  Score=131.80  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             CCCccccCCcEEEE-EEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCCcccc--c---eeeE
Q 023914          132 CGKIAYQNPKMVVG-CLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARADVEV--Q---SPFA  204 (275)
Q Consensus       132 Cg~~~y~~p~~~V~-viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl~v~~--~---~~~~  204 (275)
                      |+...|+ +.+.++ +++..++++||..|.    .|.|++|||++|+|| |+++||+||++||||+++..  +   .++.
T Consensus        45 ~~~~~~~-~~~~~v~~vi~~~~~~ll~~r~----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~  119 (217)
T 2xsq_A           45 CHALLYA-PDPGMLFGRIPLRYAILMQMRF----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS  119 (217)
T ss_dssp             EEEEEEE-EEEEEETTTEEEEEEEEEEEET----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEE
T ss_pred             eeeEEEc-CCCcEEEEEEEeeCcEEEEEcc----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEe
Confidence            7777786 544433 333323356666654    588999999999999 99999999999999998873  2   3444


Q ss_pred             EEEeCCCCEEEEEEEEEEcCCCC----------CC-CCCceeEEEecCCCCCC
Q 023914          205 QLDIPRIGQIYIIFLAKLKRPHF----------SP-GPESSECRLFALDEIPF  246 (275)
Q Consensus       205 ~~~~~~~~~~~~~f~a~~~~~e~----------~~-~~E~~d~~W~~~deL~~  246 (275)
                      ..+....+..+++|.+.+..+++          .. ++|..++.|++.+++..
T Consensus       120 ~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~d  172 (217)
T 2xsq_A          120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRD  172 (217)
T ss_dssp             EEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred             ecCCCCCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhhh
Confidence            44444457788888888765433          22 36788999999999973

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.54  E-value=8.2e-14  Score=127.26  Aligned_cols=101  Identities=19%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcc------------ccceee---EE--E--EeCCC--
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV------------EVQSPF---AQ--L--DIPRI--  211 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v------------~~~~~~---~~--~--~~~~~--  211 (275)
                      ++||++|..   .|.|.+|||+||+||++++||+||++||||+.+            ....++   +.  +  ....+  
T Consensus       140 ~vLl~~r~~---~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~  216 (292)
T 1q33_A          140 QFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN  216 (292)
T ss_dssp             EEEEEECTT---TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTC
T ss_pred             EEEEEEecC---CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCC
Confidence            699999874   589999999999999999999999999999983            111222   11  1  11121  


Q ss_pred             ----CEEEEEEEEEEcCCC------CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          212 ----GQIYIIFLAKLKRPH------FSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       212 ----~~~~~~f~a~~~~~e------~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                          ....++|.+....++      +..++|+.+++|+++++++  .+.++ ...+++
T Consensus       217 ~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~--~L~~~-h~~il~  271 (292)
T 1q33_A          217 TDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL--KLYAS-HSQFIK  271 (292)
T ss_dssp             CSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC--CCSTT-HHHHHH
T ss_pred             CcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCc--ccCHh-HHHHHH
Confidence                234566777664432      2345888999999999998  45444 444344

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.48  E-value=6.8e-14  Score=124.93  Aligned_cols=104  Identities=14%  Similarity=0.097  Sum_probs=76.4

Q ss_pred             EEEEEE-EeeCCeEEEEEeccCC--CCCceeeee-EEeeCC------CCH---HHHHHHHHHHHhCCccc-----cceee
Q 023914          142 MVVGCL-IEHDKKILLCKRKIEP--SYGLWTLPA-GYMEIG------ESA---AEGAIRETWEEARADVE-----VQSPF  203 (275)
Q Consensus       142 ~~V~vi-I~~~~~iLL~rr~~~p--~~g~w~lPg-G~vE~G------Es~---eeAa~REl~EEtGl~v~-----~~~~~  203 (275)
                      .++.++ ++.++++||+||+...  .+|+|++|+ |++++|      |++   ++||+||++||+|+.+.     .+.++
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l  150 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM  150 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence            344444 4567899999997543  479999995 999999      887   99999999999999875     24666


Q ss_pred             EEEEeC--CC-----CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          204 AQLDIP--RI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       204 ~~~~~~--~~-----~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      +.+.+.  ..     +...++|.+... +++.++ +|+.+++|++++++..
T Consensus       151 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~eel~~  200 (246)
T 2pny_A          151 TIYHHKAKSDRIWGEHEICYLLLVRKN-VTLNPDPSETKSILYLSQEELWE  200 (246)
T ss_dssp             EEEEEEEESSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHH
T ss_pred             EEEEEEecCCCceeeeEEEEEEEEEEC-CCCCCChHHeeEEEEEeHHHHHH
Confidence            655432  11     234566777753 455565 8999999999999853

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.48  E-value=8.1e-14  Score=123.53  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=76.1

Q ss_pred             EEEEE-EEeeCCeEEEEEeccCC--CCCceeee-eEEeeCC------CC---HHHHHHHHHHHHhCCccc-----cceee
Q 023914          142 MVVGC-LIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIG------ES---AAEGAIRETWEEARADVE-----VQSPF  203 (275)
Q Consensus       142 ~~V~v-iI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~G------Es---~eeAa~REl~EEtGl~v~-----~~~~~  203 (275)
                      .++.+ +++.++++||+||+...  .+|+|++| ||++++|      |+   +++||+||++||||+.+.     .+.++
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l  139 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL  139 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence            34444 44567899999997543  47999999 5999999      88   499999999999999875     35666


Q ss_pred             EEEEeC--CC-----CEEEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          204 AQLDIP--RI-----GQIYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       204 ~~~~~~--~~-----~~~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      +.+.+.  ..     +.+..+|.+... +++.++ +|..+++|++++++..
T Consensus       140 ~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~~~Ev~~~~wv~~~el~~  189 (235)
T 2dho_A          140 TRIHYKAQSDGIWGEHEIDYILLVRMN-VTLNPDPNEIKSYCYVSKEELKE  189 (235)
T ss_dssp             EEEEEEEECSSSBEEEEEEEEEEEECC-CCCCCCTTTEEEEEEECHHHHHH
T ss_pred             EEEEEeccCCCccceeEEEEEEEEEEC-CCCcCChHHEEEEEEEcHHHHHH
Confidence            655432  11     224466777753 455554 8999999999999853

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.28  E-value=1.4e-11  Score=113.01  Aligned_cols=116  Identities=16%  Similarity=0.150  Sum_probs=79.9

Q ss_pred             eEEEEEeccCC--CCCce-eeeeEEeeCCCCHHHHHHHHHHHHhCCcccc---ceeeEEEEe----CC--CCEEEEEEEE
Q 023914          153 KILLCKRKIEP--SYGLW-TLPAGYMEIGESAAEGAIRETWEEARADVEV---QSPFAQLDI----PR--IGQIYIIFLA  220 (275)
Q Consensus       153 ~iLL~rr~~~p--~~g~w-~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~---~~~~~~~~~----~~--~~~~~~~f~a  220 (275)
                      ++||.||+...  .+|+| .++||++++||++++||+||+.||+|+.+..   +...+...+    +.  .+..+++|.+
T Consensus       134 ~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~  213 (300)
T 3dup_A          134 HLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL  213 (300)
T ss_dssp             EEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEE
Confidence            89999998654  48999 5889999999999999999999999998753   233333222    21  1234566777


Q ss_pred             EEcCCC-CCCC-CCceeEEEecCCCCCC-----CCCCCcHHHHHHHHHHHHHhhccccc
Q 023914          221 KLKRPH-FSPG-PESSECRLFALDEIPF-----DSLAFSSISVTLQLVRFYFEHMTLIC  272 (275)
Q Consensus       221 ~~~~~e-~~~~-~E~~d~~W~~~deL~~-----~~l~~~s~~~al~li~~~l~~~~~i~  272 (275)
                      .+..+. +.++ +|+.+++|++++|+..     ..+.+.....+ -   +|+.++..|.
T Consensus       214 ~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~pg~F~p~~~lV~-l---dfl~RhG~i~  268 (300)
T 3dup_A          214 ALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTV-I---DFAIRHGLID  268 (300)
T ss_dssp             ECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHHCCCBCTTHHHHH-H---HHHHHTTSSC
T ss_pred             EecCCCcCCCCchHhheEEEECHHHHHHHHhcCCCcCccHHHHH-H---HHHHHhCCcC
Confidence            765432 3444 8999999999999743     34544443332 2   5766665544

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.27  E-value=2.6e-11  Score=107.38  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             CeEEEEEeccCCC--CCceeeeeEEeeCCCC--------------------HHHHHHHHHHHHhCCccccc---------
Q 023914          152 KKILLCKRKIEPS--YGLWTLPAGYMEIGES--------------------AAEGAIRETWEEARADVEVQ---------  200 (275)
Q Consensus       152 ~~iLL~rr~~~p~--~g~w~lPgG~vE~GEs--------------------~eeAa~REl~EEtGl~v~~~---------  200 (275)
                      .+|||+||.....  +|.|.||||.||+||+                    +.+||+||++||||+.+...         
T Consensus        24 ~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~Gl~l~~~~~~~~~~~~  103 (232)
T 3qsj_A           24 IEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIGWLLAVRDGEGTKMDT  103 (232)
T ss_dssp             EEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHSCCCSEECTTCCBCCS
T ss_pred             eEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhCceeccccccCcccCh
Confidence            3899999987642  7999999999999987                    58999999999999975211         


Q ss_pred             ---------------------------------eeeEEEEeCC--C-CEEEEEEEEEEcCCC-CCC-CCCceeEEEecCC
Q 023914          201 ---------------------------------SPFAQLDIPR--I-GQIYIIFLAKLKRPH-FSP-GPESSECRLFALD  242 (275)
Q Consensus       201 ---------------------------------~~~~~~~~~~--~-~~~~~~f~a~~~~~e-~~~-~~E~~d~~W~~~d  242 (275)
                                                       .+++.+-.|.  + +....+|.+.+.... +.. .+|..+++|++++
T Consensus       104 ~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~~~v~~d~~E~~~~~W~~p~  183 (232)
T 3qsj_A          104 PLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHLGEPRLHGAELDAALWTPAR  183 (232)
T ss_dssp             CCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSCCCCCCCSSSEEEEEEEEHH
T ss_pred             hhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCCCCCCCCCCceEEEEEEcHH
Confidence                                             1111111121  1 244566777766332 233 4899999999999


Q ss_pred             CC
Q 023914          243 EI  244 (275)
Q Consensus       243 eL  244 (275)
                      |+
T Consensus       184 ea  185 (232)
T 3qsj_A          184 DM  185 (232)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.14  E-value=1.6e-11  Score=105.47  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=67.9

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCC-CHHHHHHHHHHHHhCC-ccccceeeEEEEeCCC-CEEEEEEEEEEcCCCCC-
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGE-SAAEGAIRETWEEARA-DVEVQSPFAQLDIPRI-GQIYIIFLAKLKRPHFS-  228 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GE-s~eeAa~REl~EEtGl-~v~~~~~~~~~~~~~~-~~~~~~f~a~~~~~e~~-  228 (275)
                      .||++.|.    .|.|+||||+||+|| |+++|+.||+.||+|+ ++....++.+..+..+ ...+++|.+++..+++. 
T Consensus        45 ~iLmQ~R~----~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp~~V~LHfY~crl~~Ge~~~  120 (214)
T 3kvh_A           45 SVLMQMRF----DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHA  120 (214)
T ss_dssp             EEEEEEET----TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC----CEEEEEEEEECCHHHHHH
T ss_pred             eEEEeeee----CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCCCEEEEEEEEEEeeCCccch
Confidence            46777665    699999999999999 9999999999999997 6888888888766554 67888999998766521 


Q ss_pred             ----------CCCCceeEEEecCCCCCC
Q 023914          229 ----------PGPESSECRLFALDEIPF  246 (275)
Q Consensus       229 ----------~~~E~~d~~W~~~deL~~  246 (275)
                                -+-|.....-++.=.+.+
T Consensus       121 lE~~A~~A~d~G~EvlGlvRVPlytl~D  148 (214)
T 3kvh_A          121 VEISAVHSRDHGLEVLGLVRVPLYTQKD  148 (214)
T ss_dssp             HHHHHHTSTTBTTTEEEEEEECCCBCTT
T ss_pred             hhhcccCCcccCceecceEEeeeEEecc
Confidence                      135666677777776654

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.96  E-value=6.2e-10  Score=96.36  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             EEEEeeCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhC------CccccceeeEEEEeC
Q 023914          145 GCLIEHDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEAR------ADVEVQSPFAQLDIP  209 (275)
Q Consensus       145 ~viI~~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtG------l~v~~~~~~~~~~~~  209 (275)
                      ++++++++  +|||+|+.    .+.|.+|||.+|+||+.++|++||+.||+|      .+++..++++.+-.+
T Consensus        64 vil~~~~~~phVLLlq~~----~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp  132 (208)
T 3bho_A           64 VLIVHEHRLPHVLLLQLG----TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRP  132 (208)
T ss_dssp             EEEEEETTEEEEEEEEEE----TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEEC
T ss_pred             EEEEcCCCCcEEEEEEcC----CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecC
Confidence            33444444  79999975    468999999999999999999999999999      456667788876533

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.68  E-value=1.3e-05  Score=54.10  Aligned_cols=33  Identities=27%  Similarity=0.555  Sum_probs=26.9

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      +.++|||.||+.....    ....+.+|++||+++|.
T Consensus        17 ~~~k~CP~CG~~~fm~----~~~~R~~C~kCG~t~~~   49 (50)
T 3j20_Y           17 RKNKFCPRCGPGVFMA----DHGDRWACGKCGYTEWK   49 (50)
T ss_dssp             CSSEECSSSCSSCEEE----ECSSEEECSSSCCEEEC
T ss_pred             EecccCCCCCCceEEe----cCCCeEECCCCCCEEEC
Confidence            4679999999987665    33568999999999985

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=96.55  E-value=0.0014  Score=44.89  Aligned_cols=35  Identities=29%  Similarity=0.557  Sum_probs=26.2

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCccccCC
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNP  140 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~p  140 (275)
                      +..+|||.||..+...    ....+..|..||.+.|-.+
T Consensus        16 ~~~~fCPkCG~~~~ma----~~~dr~~C~kCgyt~~~~~   50 (55)
T 2k4x_A           16 RKHRFCPRCGPGVFLA----EHADRYSCGRCGYTEFKKA   50 (55)
T ss_dssp             CSSCCCTTTTTTCCCE----ECSSEEECTTTCCCEECCC
T ss_pred             EccccCcCCCCceeEe----ccCCEEECCCCCCEEEeCc
Confidence            4579999999976544    2245899999999877543

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=96.07  E-value=0.0063  Score=47.56  Aligned_cols=37  Identities=14%  Similarity=0.333  Sum_probs=29.8

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      ..+|||.||.-|......+++..+..|..|++.++..
T Consensus         3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~   39 (113)
T 3h0g_I            3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA   39 (113)
T ss_dssp             CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred             cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence            5789999999998875444456789999999988754

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=94.35  E-value=0.026  Score=45.39  Aligned_cols=36  Identities=14%  Similarity=0.375  Sum_probs=26.4

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAY  137 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y  137 (275)
                      ...+|||.||.-|........+..+..|..|++..-
T Consensus        22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~   57 (133)
T 3qt1_I           22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE   57 (133)
T ss_dssp             CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred             cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence            446999999999977632112456899999998663

>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}

Probab=92.67  E-value=0.046  Score=47.93  Aligned_cols=43  Identities=21%  Similarity=0.359  Sum_probs=27.1

Q ss_pred             HHHHHH-hhhhcCCCCcCCCCC-CcccccCCCccceeecCCCCCcc
Q 023914           93 AAVHSA-GNVLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus        93 ~a~~l~-~w~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      .|+=|. .|...+.|||.||+. +... .....---..|+.|+..+
T Consensus        22 ~aRVLTE~Wv~~n~yCPnCG~~~l~~f-~nN~PVaDF~C~~C~Eey   66 (257)
T 4esj_A           22 KARILTEDWVYRQSYCPNCGNNPLNHF-ENNRPVADFYCNHCSEEF   66 (257)
T ss_dssp             HHHHHHHHHHHHHCCCTTTCCSSCEEC-----CCCEEECTTTCCEE
T ss_pred             eehhhhHHHHHHCCcCCCCCChhhhhc-cCCCcccccccCCcchhh
Confidence            444443 699999999999995 4333 221122237999998644

>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...

Probab=91.46  E-value=0.089  Score=41.45  Aligned_cols=36  Identities=14%  Similarity=0.386  Sum_probs=26.1

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ..+|||.||.-|...........+..|..||+..-.
T Consensus         3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~   38 (122)
T 1twf_I            3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA   38 (122)
T ss_dssp             CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred             CCCcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence            568999999999765311123568999999986643

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=91.14  E-value=0.15  Score=33.57  Aligned_cols=32  Identities=22%  Similarity=0.546  Sum_probs=22.1

Q ss_pred             CCCCcCCCC-CCcccccCCCccceeecCCCCCccccC
Q 023914          104 ISFCQWCGG-QTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       104 ~~fC~~CG~-~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      ...||.||+ .+...    .+.-..+|..||.++-.+
T Consensus         5 ~~~CP~C~~~~l~~d----~~~gelvC~~CG~v~~e~   37 (50)
T 1pft_A            5 QKVCPACESAELIYD----PERGEIVCAKCGYVIEEN   37 (50)
T ss_dssp             CCSCTTTSCCCEEEE----TTTTEEEESSSCCBCCCC
T ss_pred             cEeCcCCCCcceEEc----CCCCeEECcccCCccccc
Confidence            457999999 65443    233348999999876543

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=88.83  E-value=0.14  Score=36.57  Aligned_cols=29  Identities=21%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCC-ccccC
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGK-IAYQN  139 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~-~~y~~  139 (275)
                      -|+.||...+..     .+...+|+.||. +.|..
T Consensus        30 ~C~~CG~~~e~~-----~~d~irCp~CG~RILyK~   59 (70)
T 1twf_L           30 ICAECSSKLSLS-----RTDAVRCKDCGHRILLKA   59 (70)
T ss_dssp             ECSSSCCEECCC-----TTSTTCCSSSCCCCCBCC
T ss_pred             ECCCCCCcceeC-----CCCCccCCCCCceEeEec
Confidence            599999997665     223458999998 67753

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=88.34  E-value=0.13  Score=37.95  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             HHhhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914           97 SAGNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus        97 l~~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      +..-....-.||.||+.+...    .+--.+.|+.||..
T Consensus        20 ie~~q~~~y~Cp~CG~~~v~r----~atGiW~C~~Cg~~   54 (83)
T 1vq8_Z           20 IESEMNEDHACPNCGEDRVDR----QGTGIWQCSYCDYK   54 (83)
T ss_dssp             HHHHHHSCEECSSSCCEEEEE----EETTEEEETTTCCE
T ss_pred             HHHhccccCcCCCCCCcceec----cCCCeEECCCCCCE
Confidence            333344566899999976554    23346899999975

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=87.98  E-value=0.22  Score=35.33  Aligned_cols=32  Identities=28%  Similarity=0.555  Sum_probs=23.3

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ...--||.|++++...    ..+...+|++|| ..||
T Consensus         6 L~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP   37 (68)
T 2hf1_A            6 LEILVCPLCKGPLVFD----KSKDELICKGDR-LAFP   37 (68)
T ss_dssp             EEECBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred             hhheECCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence            3445799999999876    334568999998 4454

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=87.82  E-value=0.23  Score=35.23  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      |....--||.|++++...    ......+|++|| ..||
T Consensus         4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP   37 (68)
T 2jr6_A            4 KFLDILVCPVTKGRLEYH----QDKQELWSRQAK-LAYP   37 (68)
T ss_dssp             SSSCCCBCSSSCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred             HHhhheECCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence            344556799999999876    334568999998 4454

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=87.22  E-value=0.22  Score=35.53  Aligned_cols=35  Identities=20%  Similarity=0.540  Sum_probs=24.8

Q ss_pred             hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      |....--||.|++++...    ..+...+|++|| ..||-
T Consensus         4 ~LL~iL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YPI   38 (70)
T 2js4_A            4 RLLDILVCPVCKGRLEFQ----RAQAELVCNADR-LAFPV   38 (70)
T ss_dssp             CCCCCCBCTTTCCBEEEE----TTTTEEEETTTT-EEEEE
T ss_pred             HHhhheECCCCCCcCEEe----CCCCEEEcCCCC-ceecC
Confidence            334556799999998776    334568999998 45553

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=86.28  E-value=0.44  Score=33.80  Aligned_cols=34  Identities=32%  Similarity=0.574  Sum_probs=25.1

Q ss_pred             hhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          100 NVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       100 w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      |....--||.|++++...    ..+...+|++|| ..||
T Consensus         4 ~LLeiL~CP~ck~~L~~~----~~~~~LiC~~cg-~~YP   37 (69)
T 2pk7_A            4 KLLDILACPICKGPLKLS----ADKTELISKGAG-LAYP   37 (69)
T ss_dssp             CGGGTCCCTTTCCCCEEC----TTSSEEEETTTT-EEEE
T ss_pred             HHHhheeCCCCCCcCeEe----CCCCEEEcCCCC-cEec
Confidence            445567899999999876    334568999998 4555

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=85.48  E-value=0.43  Score=32.59  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             hhcCCCCcCCCCC-CcccccCCCccceeecCCCCCcccc
Q 023914          101 VLKISFCQWCGGQ-TKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       101 ~~~~~fC~~CG~~-~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ......||.||+. +...    ...--.+|..||.+.-.
T Consensus         8 ll~~~~Cp~C~~~~lv~D----~~~ge~vC~~CGlVl~e   42 (58)
T 1dl6_A            8 ALPRVTCPNHPDAILVED----YRAGDMICPECGLVVGD   42 (58)
T ss_dssp             CCSCCSBTTBSSSCCEEC----SSSCCEECTTTCCEECC
T ss_pred             ccccccCcCCCCCceeEe----CCCCeEEeCCCCCEEec
Confidence            3445689999984 3332    12233799999976543

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=82.31  E-value=0.51  Score=37.55  Aligned_cols=31  Identities=16%  Similarity=0.390  Sum_probs=25.1

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ...-||.|+++....     ++...+||.|+++.-+
T Consensus        26 ~lP~CP~C~seytYe-----Dg~l~vCPeC~hEW~~   56 (138)
T 2akl_A           26 TLPPCPQCNSEYTYE-----DGALLVCPECAHEWSP   56 (138)
T ss_dssp             CSCCCTTTCCCCCEE-----CSSSEEETTTTEEECT
T ss_pred             cCCCCCCCCCcceEe-----cCCeEECCccccccCC
Confidence            458899999998665     4566999999988754

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=81.38  E-value=0.91  Score=31.99  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=25.9

Q ss_pred             hhhhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914           99 GNVLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus        99 ~w~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      .|....--||.|++++...    ..+...+|+.|+ ..||
T Consensus         5 ~~LLeiL~CP~ck~~L~~~----~~~g~LvC~~c~-~~YP   39 (67)
T 2jny_A            5 PQLLEVLACPKDKGPLRYL----ESEQLLVNERLN-LAYR   39 (67)
T ss_dssp             GGGTCCCBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred             HHHHHHhCCCCCCCcCeEe----CCCCEEEcCCCC-cccc
Confidence            4556677899999999876    334468999998 4555

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=81.20  E-value=0.55  Score=34.38  Aligned_cols=30  Identities=27%  Similarity=0.516  Sum_probs=20.7

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      .+.+|||.|+..+...    .+.....|+.|++.
T Consensus        23 ~~~~wCP~C~~~~~~~----~~~~~v~C~~C~~~   52 (86)
T 2ct7_A           23 PKFLWCAQCSFGFIYE----REQLEATCPQCHQT   52 (86)
T ss_dssp             CCEECCSSSCCCEECC----CSCSCEECTTTCCE
T ss_pred             CCEeECcCCCchheec----CCCCceEeCCCCCc
Confidence            4557899999987443    23455789888864

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=80.86  E-value=1  Score=29.48  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      -|.+||+.+.....  +--..-.||-||+..+-
T Consensus         5 ~C~rCg~~fs~~el--~~lP~IrCpyCGyrii~   35 (48)
T 4ayb_P            5 RCGKCWKTFTDEQL--KVLPGVRCPYCGYKIIF   35 (48)
T ss_dssp             CCCCTTTTCCCCCS--CCCSSSCCTTTCCSCEE
T ss_pred             EeeccCCCccHHHH--hhCCCcccCccCcEEEE
Confidence            49999999865532  12233589999987654

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=80.75  E-value=1.1  Score=32.11  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             hhcCCCCcCCCCCCcccccCCCccceeecCCCCCcc
Q 023914          101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIA  136 (275)
Q Consensus       101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~  136 (275)
                      ....-.||.||+....+    .+--.+.|..|+...
T Consensus        23 q~~ky~C~fCgk~~vkR----~a~GIW~C~~C~~~~   54 (72)
T 3jyw_9           23 QHARYDCSFCGKKTVKR----GAAGIWTCSCCKKTV   54 (72)
T ss_dssp             HHSCBCCSSCCSSCBSB----CSSSCBCCSSSCCCC
T ss_pred             hccCccCCCCCCceeEe----cCCCeEECCCCCCEE
Confidence            34456899999886544    233458999998753

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=80.57  E-value=0.79  Score=37.31  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=25.8

Q ss_pred             hhcCCCCcC--CCCCCcccccCCCccceeecCCCCCcccc
Q 023914          101 VLKISFCQW--CGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       101 ~~~~~fC~~--CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      .+..+.||.  ||...-+.    .-..|..|..||..++-
T Consensus       115 ~~~~~~c~~~~cg~g~fma----~h~~r~~cgkc~~t~~~  150 (152)
T 3u5c_f          115 TKLRRECSNPTCGAGVFLA----NHKDRLYCGKCHSVYKV  150 (152)
T ss_dssp             ECCSCBCCSTTSCSSSBEE----ECSSCEEESSSSSCCEE
T ss_pred             EECcCcCCCccCCCceEec----ccCCCcccCCCceEEEe
Confidence            345789999  99986665    33458999999987754

>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1

Probab=80.56  E-value=0.6  Score=35.22  Aligned_cols=30  Identities=27%  Similarity=0.650  Sum_probs=22.1

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ..+..|++||...-..       .+..|..||+..+.
T Consensus        14 KtH~lCrRCG~~sfH~-------qK~~CgkCGYpa~k   43 (97)
T 2zkr_2           14 KTHTLCRRCGSKAYHL-------QKSTCGKCGYPAKR   43 (97)
T ss_dssp             CCEECCTTTCSSCEET-------TSCCBTTTCTTTSS
T ss_pred             CCCCcCCCCCCccCcC-------ccccCcccCCchHh
Confidence            4577999999995322       36799999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	7e-23
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-22
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-20
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	1e-19
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	5e-17
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	3e-16
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	8e-16
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-15
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	2e-15
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	3e-15
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	4e-15
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	7e-14
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-13
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	5e-13
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	3e-12
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	5e-11
d1rrqa2	127	d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-	9e-10
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-09
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	2e-08
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-07
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	3e-06
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	8e-06
d1mqea_	202	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobac	1e-05
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-05
d1x51a1	142	d.113.1.3 (A:8-149) A/G-specific adenine DNA glyco	1e-04
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	0.001

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 91.0 bits (225), Expect = 7e-23
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLI------EHDKKILLCKR 159
           F      +  +E      +            Y+ P + V  ++          K+LL +R
Sbjct: 2   FASKAEEKNYYERQASLAEFLTWYHQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQR 61

Query: 160 KIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQ------ 213
           K  P    W LP G++   ES  +  +RET EE    +  ++        R  +      
Sbjct: 62  KGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWV 121

Query: 214 IYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
           + + +LA +       G ++ E   F L+   
Sbjct: 122 VTVSYLAFIGEEPLIAGDDAKEVHWFNLERHG 153

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 88.3 bits (218), Expect = 2e-22
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 7/133 (5%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           P + V  +IE D K LL +     +      PAG++E GES  +   RE  EE       
Sbjct: 2   PNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 61

Query: 200 QSPFAQLDIPRIGQ----IYIIFLAKLKR--PHFSPGPESSECRLFALDEIPFDSLAFSS 253
           +                 +   F  ++    P             F++DEI        +
Sbjct: 62  EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRT 121

Query: 254 ISVTLQLVRFYFE 266
             V +Q +  Y  
Sbjct: 122 PLV-MQCIEDYHA 133

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (206), Expect = 1e-20
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
            ++    L+   +++LL  +K     G W    G ++ GE+  +GA RE  EE+   V+ 
Sbjct: 4   SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDA 63

Query: 200 QSPFAQLDIPRIGQIYIIFLAKLKRPHFS---PGPESSECRLFALDEIPFDSLA 250
                Q+    +G+  ++ +               +      F LD+IPF  + 
Sbjct: 64  LHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMW 117

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 80.1 bits (197), Expect = 1e-19
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
            +   I  D  ILL +       G+ T+ AG++E+GE+  +   RE  EE+   V+    
Sbjct: 5   CIIVAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY 63

Query: 203 FAQLDIPRIGQIYIIFLAKLKRPHFSPGP-ESSECRLFALDEIPF----DSLAFSSISVT 257
                 P    +   F+A+         P E  E   +  D++P      ++A   I  T
Sbjct: 64  VTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDT 123

Query: 258 LQLVR 262
           + + R
Sbjct: 124 VAMCR 128

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 73.7 bits (180), Expect = 5e-17
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 137 YQNPKMVVG--CLI----EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETW 190
             NP   +G  C+I    E +  +LL KR  EP+ G W+L  G+++  ES  + A R   
Sbjct: 4   SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLA 63

Query: 191 EEARADVEVQSPFAQLD----IPRIGQIYIIFLAKLK-RPHFSPGPESSECRLFALDEIP 245
           E    +                P    + I + A +    +     +        ++E+P
Sbjct: 64  ELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELP 123

Query: 246 FDSLAF 251
             +L F
Sbjct: 124 --ALIF 127

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 71.2 bits (174), Expect = 3e-16
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
             G +    +++LL + +     G W  P G+ E GES  E A+RE WEE     EV  P
Sbjct: 5   AGGVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP 60

Query: 203 FAQLDIP---RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ 259
                      + +    FL + +          +    F+ +E     LAF      L 
Sbjct: 61  LYPTRYVNPKGVEREVHWFLMRGE-GAPRLEEGMTGAGWFSPEEAR-ALLAFPE---DLG 115

Query: 260 LVRFYFEHMTL 270
           L+    E + L
Sbjct: 116 LLEVALERLPL 126

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 71.0 bits (173), Expect = 8e-16
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY----GLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
               L+     ILL + K  P +    GLW +P+G +E GE+  + A+RE  EE    V 
Sbjct: 15  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 74

Query: 199 VQSPFAQLDIPRIGQIYI---IFLAKL---KRPHFSPGPESSECRLFALDEIP 245
                          + I   ++LA+    +    +   E +E    + ++  
Sbjct: 75  PVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA 127

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 134 KIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEA 193
            + YQ        + + +   ++  +      G + LP G +E  E+  E   RE  EE 
Sbjct: 11  TLTYQTRYAAYIIVSKPENNTMVLVQAPN---GAYFLPGGEIEGTETKEEAIHREVLEEL 67

Query: 194 RADVEVQSPFAQLDI--------PRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
              VE+     + D                  ++A   R    P   ++     A +E  
Sbjct: 68  GISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAV 127

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 137 YQNPKMVVGCLI--EHDKKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEA 193
            Q   +   CLI     +++++  R  E + +  +  P G++E  E+ AE  IRE +EE 
Sbjct: 4   SQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEET 63

Query: 194 RADVEVQSPFAQLDIPRIGQ---IYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLA 250
              ++        + P       I I + A           E  E      D+IP  +LA
Sbjct: 64  GLTIQNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQSS-EEGEVSWVQKDQIPNLNLA 122

Query: 251 FS 252
           + 
Sbjct: 123 YD 124

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 69.5 bits (169), Expect = 3e-15
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 14/128 (10%)

Query: 134 KIAYQNPKMVVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEE 192
            +    P + +  ++E+ + + LL KR   P+ G W +P G ++  E+      R T  E
Sbjct: 11  TVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAE 70

Query: 193 ARADVEVQSPFAQL------------DIPRIGQIYIIFLAKLKR-PHFSPGPESSECRLF 239
               + + +                        + + F  ++       P  +  + R  
Sbjct: 71  LGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWL 130

Query: 240 ALDEIPFD 247
             D +   
Sbjct: 131 TSDALLAS 138

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 141 KMVVGCLI---EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADV 197
           K    CL    E ++++LL      P    W +P G ME  E  +  A+RE  EEA    
Sbjct: 11  KKRAACLCFRSESEEEVLLVSSSRHP--DRWIVPGGGMEPEEEPSVAAVREVCEEAGVKG 68

Query: 198 EVQSP---FAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIP 245
            +      F   +      +Y++ + ++            +   F +++  
Sbjct: 69  TLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAI 119

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 7e-14
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 17/154 (11%)

Query: 119 PHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIG 178
           P G   +RA    CG I ++    ++  +  +  + LL +         WT P G++E G
Sbjct: 2   PLGSMALRA----CGLIIFRRC--LIPKVDNNAIEFLLLQASDGI--HHWTPPKGHVEPG 53

Query: 179 ESAAEGAIRETWEEARADV------EVQSPFAQLDIPRIGQIYIIFLAKLKRPH--FSPG 230
           E   E A+R T EEA  +       E              +  I +LA++K         
Sbjct: 54  EDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLS 113

Query: 231 PESSECRLFALDEIPFDSLAFSSISVTLQLVRFY 264
            E    R   L+E       F  +   LQ    +
Sbjct: 114 HEHQAYRWLGLEEAC-QLAQFKEMKAALQEGHQF 146

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           +V   ++  + K+LL K       G++  P G++E  E+  E   RE  EE    VE   
Sbjct: 2   IVTSGVLVENGKVLLVKH---KRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 202 PFAQL------DIPRIGQIYIIFLAKLKRPHFS---------PGPESSECRLFALDEIP 245
               +      + P    I    +   +  H            G +        + EI 
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREID 117

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 62.9 bits (152), Expect = 5e-13
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 9/110 (8%)

Query: 143 VVGCLI--EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE-V 199
           V G ++     ++ +L K         W  P G ++  ES  + AIRE +EE   D    
Sbjct: 4   VRGAIMLDMSMQQCVLVKGWKAS--SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSR 61

Query: 200 QSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGP----ESSECRLFALDEIP 245
            +P   +D+   GQ   +++                E S+     L ++P
Sbjct: 62  INPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLP 111

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 24/143 (16%)

Query: 122 EEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESA 181
            E  +  C     +   +   +    +   + +L+  R      G    P G+++  + +
Sbjct: 16  LEGYKHACHAL--LHAPSQAKLFDR-VPIRRVLLMMMR----FDGRLGFPGGFVDTRDIS 68

Query: 182 AE-GAIRETWEEARADVE------VQSPFAQLDIPRIGQIYIIFLAKL--------KRPH 226
            E G  RE  EE    +            +Q+       +   ++ +L        +   
Sbjct: 69  LEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEA 128

Query: 227 FSPGPESSECRLFALDEIPFDSL 249
            +      E     L  +P  +L
Sbjct: 129 VNAKDHGLEV--MGLIRVPLYTL 149

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (136), Expect = 5e-11
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEV 199
           ++ VG +   + +I + +R  +         P G +E+GE+  +  +RE  EE     + 
Sbjct: 5   QIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQH 64

Query: 200 QSPFAQLDIPRIGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLA 250
            S F +L+     +   ++   ++R    P G E       +L  +  D   
Sbjct: 65  FSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFP 116

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 53.2 bits (127), Expect = 9e-10
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 141 KMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ 200
            + V  L + + ++L+ KR                  G    E   +   E+    VE+ 
Sbjct: 5   PLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELT 64

Query: 201 SPFAQL--DIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS 253
            P          +     +F  +L       GP     RL   DE+   + AF  
Sbjct: 65  EPIVSFEHAFSHLVWQLTVFPGRL----VHGGPVEEPYRLAPEDEL--KAYAFPV 113

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 36/131 (27%)

Query: 153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG 212
           + +  KR      G W +P G ++ GE  +    RE  EEA   ++  S   +    ++ 
Sbjct: 140 QFVAIKR---KDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLH 196

Query: 213 QIY-------------------------IIFLAKL------KRPHFSPGPESSECRLFAL 241
           +++                                             G ++ + +   +
Sbjct: 197 KLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDI 256

Query: 242 DEIPFDSLAFS 252
           ++     L  S
Sbjct: 257 NDKL--KLYAS 265

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 144 VGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP 202
           V  +   + ++L  ++           +PAG +E GE   E A RE  E+     ++   
Sbjct: 27  VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYL 86

Query: 203 FAQLDIP--RIGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEI 244
           F+    P     + ++     LK     P   E+ E      +E 
Sbjct: 87  FSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEA 131

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 30/129 (23%), Positives = 39/129 (30%), Gaps = 28/129 (21%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE---- 198
           V  CL+ +DKKI    R   P    W +P G ++ GE     AIRE  EE          
Sbjct: 17  VGICLMNNDKKIFAASRLDIP--DAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIA 74

Query: 199 --------------VQSPFAQLDIPRIGQIYIIFLAKLK--------RPHFSPGPESSEC 236
                          +    Q      GQ    FL K              S  PE  E 
Sbjct: 75  EVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEW 134

Query: 237 RLFALDEIP 245
                +++ 
Sbjct: 135 SWVTPEQLI 143

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 12/134 (8%)

Query: 117 EVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYM 175
           E  +G  ++        + A       V  +   D  ++L +     +         G +
Sbjct: 31  EFSNGVRRVYERMRPTNREA-------VMIVPIVDDHLILIREYAVGTESYELGFSKGLI 83

Query: 176 EIGESAAEGAIRETWEEARADVEVQSPFAQL--DIPRIGQIYIIFLAKLKRPHFSPG--P 231
           + GES  E A RE  EE        +   +L            I +A+   P    G  P
Sbjct: 84  DPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEP 143

Query: 232 ESSECRLFALDEIP 245
           E      + L  + 
Sbjct: 144 EPLPQVRWPLAHMM 157

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 109 WCGGQTKHEVPHGEEKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKR--KIEPSYG 166
           W  G+T+  +     +  A+              +V    E D ++LL  R  ++    G
Sbjct: 16  WLSGRTRTALELPHYRRAAV--------------LVALTREADPRVLLTVRSSELPTHKG 61

Query: 167 LWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYII-----FLAK 221
               P G ++ GE+  + A+RE  EE   D    +   +LD       + +      +A 
Sbjct: 62  QIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAP 121

Query: 222 LKRPHFSPGPESSECRLFALDEI 244
                    PE ++     L E+
Sbjct: 122 EALDTLRVTPEVAQIITPTLAEL 144

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 8/110 (7%)

Query: 143 VVGCLIEHDKKILLCKRKIE-PSYGLWTLPAGYMEIGESAAEGAIRETWEEA---RADVE 198
           V    ++ +  I +  +        LW LPAG +++              E    +A   
Sbjct: 41  VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW 100

Query: 199 VQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGP----ESSECRLFALDEI 244
                         +   ++LA   R    P             + + E 
Sbjct: 101 QVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEA 150

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 12/114 (10%)

Query: 143 VVGCLIEHDK-KILLCKR---KIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVE 198
                + + K ++L+ +R   K            G+ ++GES  +  IR    E   ++ 
Sbjct: 4   AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 63

Query: 199 VQS--------PFAQLDIPRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEI 244
                                 ++  +F A+          E  + +   L ++
Sbjct: 64  PPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADV 117

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 143 VVGCLIEHDKKILLCKRKIEPSY-GLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS 201
           V+        +ILL +R       GLW  P+   E  E     A+ +  +     +    
Sbjct: 18  VLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATH 77

Query: 202 PFAQLDI----PRIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS 253
                ++      I   Y ++   L+             R    +E  F + A S+
Sbjct: 78  LRHLGEVVHTFSHIKLTYQVYGLALEGQTP-VTTVPPGARWLTQEE--FHTAAVST 130

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 15/117 (12%)

Query: 143 VVGCLIEHDKKILLCKR-------KIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARA 195
            V    +  +  ++              +  L  + AG +E GES  + A RE  EEA  
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 196 DVE--VQSPFAQLDIPRIGQIYIIFLAKLKRPHFSPGP------ESSECRLFALDEI 244
            V+                +   I + ++     S         E     + + ++ 
Sbjct: 120 IVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQA 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.93
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.88
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.87
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.84
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.84
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.83
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.83
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.81
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.78
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.77
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.76
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.76
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.74
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.74
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.74
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.74
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.72
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.72
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.71
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.7
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.67
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.67
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.67
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.61
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.61
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.56
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.49
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.48
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.41
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.31
d1vk6a4	29	NADH pyrophosphatase intervening domain {Escherich	97.46
d1vk6a3	97	NADH pyrophosphatase {Escherichia coli [TaxId: 562	97.23
d2k4xa1	55	Ribosomal protein S27ae {Thermoplasma acidophilum	96.08
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	93.29
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	91.66
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	89.04
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	84.82
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	84.39
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	82.15
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	81.8

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.6e-25  Score=179.74  Aligned_cols=125  Identities=21%  Similarity=0.270  Sum_probs=109.0

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEEEEE
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYIIFL  219 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~  219 (275)
                      ..|+|++++.+++++||+||+..+ +|.|++|||++|+|||+++||+||++||||+++....+++...++..+..++.|.
T Consensus         2 i~paViv~i~~~~~vLL~~~~~~~-~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~f~   80 (131)
T d1vk6a2           2 IAPCIIVAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFM   80 (131)
T ss_dssp             CEEEEEEEEEETTEEEEEEETTTC-SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cccEEEEEEEeCCEEEEEEeccCC-CCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCcCceEEEEEE
Confidence            467888899999999999998766 6899999999999999999999999999999999999999988888888999999


Q ss_pred             EEEcCCCCCCC-CCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          220 AKLKRPHFSPG-PESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       220 a~~~~~e~~~~-~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      +....+++..+ +|..+++||+++|++..  . +...++.++|++|++..
T Consensus        81 ~~~~~~~~~~~~~E~~~~~W~~~~el~~l--~-~~~~i~r~li~~~l~~~  127 (131)
T d1vk6a2          81 AEYDSGDIVIDPKELLEANWYRYDDLPLL--P-PPGTVARRLIEDTVAMC  127 (131)
T ss_dssp             EEEEECCCCCCTTTEEEEEEEETTSCCSC--C-CTTSHHHHHHHHHHHHH
T ss_pred             EEEcCCcccCCCccEEEEEEEcHHHHhhC--C-CChHHHHHHHHHHHHHH
Confidence            99988887765 88999999999999843  2 33456678888998754

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.88  E-value=4.9e-23  Score=166.13  Aligned_cols=128  Identities=21%  Similarity=0.222  Sum_probs=97.7

Q ss_pred             CCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCC--EE
Q 023914          139 NPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIG--QI  214 (275)
Q Consensus       139 ~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~--~~  214 (275)
                      +|.++|++||.+++++||++|...+..|.|.+|||++|.|||+++||+||++||||+++....+++.+.+  +..+  ..
T Consensus         1 ~P~v~va~ii~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d2b0va1           1 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL   80 (146)
T ss_dssp             CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             CCeEEEEEEEEeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEE
Confidence            5778888888999999999999887788999999999999999999999999999999988887776554  3333  34


Q ss_pred             EEEEEEEEcCCC--CCCCCCceeEEEecCCCCCCCCC--CCcHHHHHHHHHHHHHhhcc
Q 023914          215 YIIFLAKLKRPH--FSPGPESSECRLFALDEIPFDSL--AFSSISVTLQLVRFYFEHMT  269 (275)
Q Consensus       215 ~~~f~a~~~~~e--~~~~~E~~d~~W~~~deL~~~~l--~~~s~~~al~li~~~l~~~~  269 (275)
                      .+.|.+......  ...++|..+++|++.+|+.....  ..+..   ++.|++|++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v---~~~l~~y~~~~~  136 (146)
T d2b0va1          81 RFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLV---MQCIEDYHAGKR  136 (146)
T ss_dssp             EEEEEEEEEEECTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHH---HHHHHHHHTTCC
T ss_pred             EEEEEEEeecCCCCCCCCcceeEEEEeeHHHHhhCccccCCHHH---HHHHHHHHhCCC
Confidence            455666654433  34458899999999999864322  12333   455669987543

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=7.2e-22  Score=161.48  Aligned_cols=119  Identities=19%  Similarity=0.315  Sum_probs=94.3

Q ss_pred             ccccCCcEEEEEEEe--eCC--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC
Q 023914          135 IAYQNPKMVVGCLIE--HDK--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR  210 (275)
Q Consensus       135 ~~y~~p~~~V~viI~--~~~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~  210 (275)
                      ..+|++.++|.++|.  +++  +|||++|...|..|.|.+|||++|+|||+++||+||++||||+++.....++.+..+.
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   83 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAID   83 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTT
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCc
Confidence            456777777766663  343  7999999988878999999999999999999999999999999998888888876543


Q ss_pred             ----CCEEEEEEEEEEcCCCCCC-CCCceeEEEecCCCCCCCCCCCcHHH
Q 023914          211 ----IGQIYIIFLAKLKRPHFSP-GPESSECRLFALDEIPFDSLAFSSIS  255 (275)
Q Consensus       211 ----~~~~~~~f~a~~~~~e~~~-~~E~~d~~W~~~deL~~~~l~~~s~~  255 (275)
                          .+.+.++|.+......... .+|..+++||++++++  +++|++..
T Consensus        84 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp--~lafDH~~  131 (147)
T d2fb1a2          84 RDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELP--ALIFDHPE  131 (147)
T ss_dssp             SSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCC--CBSTTHHH
T ss_pred             ccCCCceEEEEEEEEecCCcccCCCcchhheEEecHHhch--hcccCHHH
Confidence                3456677888775554332 3677889999999999  67787643

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.84  E-value=2.8e-20  Score=159.63  Aligned_cols=116  Identities=24%  Similarity=0.406  Sum_probs=92.1

Q ss_pred             CCCCccccCCcEEEEEEEe--e-C-C--eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCcccccee--
Q 023914          131 VCGKIAYQNPKMVVGCLIE--H-D-K--KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSP--  202 (275)
Q Consensus       131 ~Cg~~~y~~p~~~V~viI~--~-~-~--~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~--  202 (275)
                      .+....||+|.++|.++|.  + + +  +|||++|+..|..|.|.+|||+||.|||+++||+||++||||+++....+  
T Consensus        27 ~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~  106 (202)
T d2fmla2          27 QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  106 (202)
T ss_dssp             TSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             cccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeee
Confidence            3445569999999877663  2 2 2  79999999888889999999999999999999999999999998865544  


Q ss_pred             eEEEEeC----CCCEEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCC
Q 023914          203 FAQLDIP----RIGQIYIIFLAKLKRPHFSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       203 ~~~~~~~----~~~~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~  246 (275)
                      +..+..+    ..+.+.++|.+....+.+..++|..+++||+.++++.
T Consensus       107 ~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2         107 LHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETT
T ss_pred             eeecccCCccccceEEEEEEEEEeCCCCcCCCcceeeEEEEeHHHCcc
Confidence            4444332    2346677888877766666778999999999999864

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-20  Score=154.42  Aligned_cols=118  Identities=21%  Similarity=0.264  Sum_probs=88.3

Q ss_pred             CcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEEE--
Q 023914          140 PKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQIY--  215 (275)
Q Consensus       140 p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~~--  215 (275)
                      ++.++++++.++++|||++|+..+..|+|.+|||++|+|||+++||+||++||||+++...+.++...+  +..+..+  
T Consensus         4 ~r~~~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   83 (156)
T d1irya_           4 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDV   83 (156)
T ss_dssp             CEEEEEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEEE
T ss_pred             cEEEEEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEEEEE
Confidence            466778888899999999998877789999999999999999999999999999999988888776554  3333333  


Q ss_pred             EEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          216 IIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       216 ~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      ++|.+....+++... |..+++||++++++..++. +..+..+.
T Consensus        84 ~~~~~~~~~~~~~~~-ee~~~~W~~~~~l~~~~~~-~~d~~~l~  125 (156)
T d1irya_          84 HVFCTDSIQGTPVES-DEMRPCWFQLDQIPFKDMW-PDDSYWFP  125 (156)
T ss_dssp             EEECCCCBCSCCCCC-SSEEEEEEETTCCCSTTTC-SSHHHHHH
T ss_pred             EEEEEEeecCcccCC-chhheEEeEHHHCCcCCCC-ccHHHHHH
Confidence            334444334444343 4457899999999976654 44444344

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.5e-21  Score=152.69  Aligned_cols=117  Identities=18%  Similarity=0.268  Sum_probs=89.5

Q ss_pred             cEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEE
Q 023914          141 KMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYII  217 (275)
Q Consensus       141 ~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~  217 (275)
                      .++|++++++++++||+||...+ .+|+|+||||++|.|||+++|+.||++||||+++....++....+...+  ..+++
T Consensus         5 ~vav~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~   84 (129)
T d1puna_           5 QIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWF   84 (129)
T ss_dssp             EEEEEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEE
Confidence            45666677778999999997654 3799999999999999999999999999999999988888776655444  44456


Q ss_pred             EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                      |.+....+++. ..|..+++|++++++...+++ ++...+++
T Consensus        85 ~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~-~~~~~ii~  124 (129)
T d1puna_          85 WLVERWEGEPW-GKEGQPGEWMSLVGLNADDFP-PANEPVIA  124 (129)
T ss_dssp             EECCCCSSCCC-TTSSSCCEEECGGGCCTTTSC-GGGHHHHH
T ss_pred             EEEeeccCcCC-CCccceEEEEEHHHcccCCCC-cchHHHHH
Confidence            66655555443 367889999999999965554 33343343

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.83  E-value=3.7e-20  Score=151.10  Aligned_cols=115  Identities=21%  Similarity=0.262  Sum_probs=89.3

Q ss_pred             CCCCccccCCcEEEEEEE-eeCCeEEEEEeccCC----CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE
Q 023914          131 VCGKIAYQNPKMVVGCLI-EHDKKILLCKRKIEP----SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ  205 (275)
Q Consensus       131 ~Cg~~~y~~p~~~V~viI-~~~~~iLL~rr~~~p----~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~  205 (275)
                      .+...++|....++++++ +++++|||++|+..+    ..|.|++|||++|+|||+++||+||++||||+++...++++.
T Consensus         2 ~~~~~~~p~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~   81 (158)
T d1sjya_           2 HDERTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGA   81 (158)
T ss_dssp             CSCCCCCCCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred             CCccccCCCceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEE
Confidence            355677887666666555 457899999997643    368999999999999999999999999999999999999887


Q ss_pred             EEeCCC---CEEEEEEEEEEcCCC-C--CCCCCceeEEEecCCCCC
Q 023914          206 LDIPRI---GQIYIIFLAKLKRPH-F--SPGPESSECRLFALDEIP  245 (275)
Q Consensus       206 ~~~~~~---~~~~~~f~a~~~~~e-~--~~~~E~~d~~W~~~deL~  245 (275)
                      +.+.++   ....++|.+....+. .  ..++|+.+++|++.+|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~  127 (158)
T d1sjya_          82 YLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA  127 (158)
T ss_dssp             EEEECTTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHH
T ss_pred             EEEECCCCCEEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHh
Confidence            665433   244566777766544 2  234799999999999975

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=5.3e-20  Score=145.76  Aligned_cols=117  Identities=26%  Similarity=0.349  Sum_probs=86.3

Q ss_pred             EEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC--C-EEEEE
Q 023914          142 MVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI--G-QIYII  217 (275)
Q Consensus       142 ~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~--~-~~~~~  217 (275)
                      +.|++++ +.++++||+|+.    .|.|.+|||++|+|||+++||+||++||||+++.....++...+..+  . ...++
T Consensus         3 v~agavv~~~~~~vLl~~~~----~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~   78 (126)
T d1vcda1           3 LGAGGVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHW   78 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECT----TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEcC----CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEEEEE
Confidence            4555555 556889998865    58899999999999999999999999999999988888776554332  2 33445


Q ss_pred             EEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhh
Q 023914          218 FLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEH  267 (275)
Q Consensus       218 f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~  267 (275)
                      |.+... +.+..++|+.+++|++++++... +.+|..+..++   .+++.
T Consensus        79 ~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~-~~~~~~~~il~---~~~~~  123 (126)
T d1vcda1          79 FLMRGE-GAPRLEEGMTGAGWFSPEEARAL-LAFPEDLGLLE---VALER  123 (126)
T ss_dssp             EEEEEE-SCCCCCTTCCEEEEECHHHHHHH-BCSHHHHHHHH---HHHHH
T ss_pred             EEEEEc-CCCCCCccceEEEEEEHHHHhhc-cCChHHHHHHH---HHHHh
Confidence            666654 34556688889999999998742 45666655544   55543

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.2e-19  Score=146.00  Aligned_cols=109  Identities=17%  Similarity=0.301  Sum_probs=80.9

Q ss_pred             CcEEEEEEEe-eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccc--eeeEEEEe--C--C--
Q 023914          140 PKMVVGCLIE-HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQ--SPFAQLDI--P--R--  210 (275)
Q Consensus       140 p~~~V~viI~-~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~--~~~~~~~~--~--~--  210 (275)
                      |.++|.++|. .+++|||++|+..|.+|.|.+|||++++|||+++||+||++||||+++...  ..++.+.+  +  .  
T Consensus        17 p~~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T d1ryaa_          17 PLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG   96 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTB
T ss_pred             CEEEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccC
Confidence            4556666664 457999999998887899999999999999999999999999999987643  34443322  1  1  


Q ss_pred             --CC--EEEEEEEEEEcCCCCC-CCCCceeEEEecCCCCCCCC
Q 023914          211 --IG--QIYIIFLAKLKRPHFS-PGPESSECRLFALDEIPFDS  248 (275)
Q Consensus       211 --~~--~~~~~f~a~~~~~e~~-~~~E~~d~~W~~~deL~~~~  248 (275)
                        ..  ...+.|.+....+... .++|..+++|+++++++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~  139 (160)
T d1ryaa_          97 TDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASD  139 (160)
T ss_dssp             SSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCT
T ss_pred             CCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCc
Confidence              11  3445666666555443 45889999999999987533

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.77  E-value=3.2e-19  Score=143.76  Aligned_cols=126  Identities=19%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             ccccCCcEEEEEEEeeCC-eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe----C
Q 023914          135 IAYQNPKMVVGCLIEHDK-KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI----P  209 (275)
Q Consensus       135 ~~y~~p~~~V~viI~~~~-~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~----~  209 (275)
                      ..|.....++++|.+.++ .+|++++.    .|.|++|||++|+|||+++||+||++||||+++....+++....    +
T Consensus        12 ~~y~~r~~~~~vi~~~~~~~lll~~~~----~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   87 (147)
T d2azwa1          12 LTYQTRYAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSN   87 (147)
T ss_dssp             SCCEECCEEEEECEEGGGTEEEEEECT----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEET
T ss_pred             cccCCCCeEEEEEEECCCCEEEEEEcC----CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeec
Confidence            344433334444455554 45555433    57899999999999999999999999999999988777665442    2


Q ss_pred             CCC----EEEEEEEEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhc
Q 023914          210 RIG----QIYIIFLAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHM  268 (275)
Q Consensus       210 ~~~----~~~~~f~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~  268 (275)
                      ...    ...++|.+....+.....+|..+++|++++++.. .+.++..+.+++   +|++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~-~l~~~~~r~~l~---~~la~~  146 (147)
T d2azwa1          88 HRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVR-LLKRGSHRWAVE---KWLAAA  146 (147)
T ss_dssp             TTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHH-HBSCHHHHHHHH---HHHHCC
T ss_pred             cCCceEEEEEEEEEEEeccccCCCCccceEEEEEEHHHHHH-HcCChhHHHHHH---HHHhcc
Confidence            222    2345566665555555667888999999999763 355667776666   888753

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=9.5e-19  Score=143.02  Aligned_cols=100  Identities=24%  Similarity=0.299  Sum_probs=77.2

Q ss_pred             eCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCC---CEEEEEEEEEEcCC
Q 023914          150 HDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRI---GQIYIIFLAKLKRP  225 (275)
Q Consensus       150 ~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~---~~~~~~f~a~~~~~  225 (275)
                      +++++||++|.... ..|.|++|||++|+|||+++||.||++||||+++....+++...++..   +..+++|.+....+
T Consensus        19 ~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (155)
T d2b06a1          19 ETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVICYKATEFSG   98 (155)
T ss_dssp             TTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEEEEEEECEEEE
T ss_pred             CCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEEEEEEEEEecCC
Confidence            56789999987543 347799999999999999999999999999999999988887765432   34556777766555


Q ss_pred             CCCCCCCceeEEEecCCCCCCCCCC
Q 023914          226 HFSPGPESSECRLFALDEIPFDSLA  250 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~~~~l~  250 (275)
                      ++.. .|..+++|++.++++...+.
T Consensus        99 ~~~~-~e~~~~~W~~~~el~~l~~~  122 (155)
T d2b06a1          99 TLQS-SEEGEVSWVQKDQIPNLNLA  122 (155)
T ss_dssp             CCCC-BTTBEEEEEEGGGGGGSCBC
T ss_pred             ccCC-CchheEEEEEHHHhccCCCC
Confidence            5443 56789999999999865444

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.76  E-value=1.4e-18  Score=137.82  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe------CCCCEEEEEEEEEEcCC-
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI------PRIGQIYIIFLAKLKRP-  225 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~------~~~~~~~~~f~a~~~~~-  225 (275)
                      ++||++|...  +|.|.+|||++|+|||+.+||+||++||||+++.....+....+      .........|.+..... 
T Consensus        18 ~~Ll~~r~~~--~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (137)
T d1ktga_          18 EFLLLQASYP--PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPD   95 (137)
T ss_dssp             EEEEEEESST--TCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEECSCC
T ss_pred             EEEEEEEcCC--CCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcceEEEEEEEEEecCCC
Confidence            6899988754  48999999999999999999999999999999887766543321      12223344455555443 


Q ss_pred             CCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHh
Q 023914          226 HFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFE  266 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~  266 (275)
                      ++.+++|..+++|+++++++. ...++..+.+++.+..|++
T Consensus        96 ~~~~~~E~~~~~W~~~~e~~~-~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          96 DVQLSHEHQNWKWCELEDAIK-IADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             CCCCCTTEEEEEEECHHHHHH-HHCCHHHHHHHHHHHHHHH
T ss_pred             CcCCCcceEEEEEEEHHHHHH-hcCCHHHHHHHHHHHHHhc
Confidence            456778999999999999874 2346777777776666665

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.9e-18  Score=140.48  Aligned_cols=122  Identities=18%  Similarity=0.114  Sum_probs=87.6

Q ss_pred             EEEE-EEeeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEE
Q 023914          143 VVGC-LIEHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYI  216 (275)
Q Consensus       143 ~V~v-iI~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~  216 (275)
                      +|.+ +.+.+++|||+||+...  .+|+|++| ||++++|||+++||+||++||||+++..+..++.+.+....  ....
T Consensus        32 ~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~  111 (161)
T d2fkba1          32 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA  111 (161)
T ss_dssp             EEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEEE
Confidence            4444 44677899999997543  47999887 89999999999999999999999998888877776544333  3344


Q ss_pred             EEEEEEcCCCCCCC-CCceeEEEecCCCCCCCCCCC-cHHHHHHHHHHHHHhhc
Q 023914          217 IFLAKLKRPHFSPG-PESSECRLFALDEIPFDSLAF-SSISVTLQLVRFYFEHM  268 (275)
Q Consensus       217 ~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~~~l~~-~s~~~al~li~~~l~~~  268 (275)
                      .|.+.. .+++.++ +|+.+++|++++|+....-.+ |....   .+..|++++
T Consensus       112 ~~~~~~-~~~~~~~~~Ev~~~~w~~~~el~~~~~~~~P~~~~---al~~~~~r~  161 (161)
T d2fkba1         112 LFSCVS-HGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK---ALALWMKRN  161 (161)
T ss_dssp             EEEEEC-CCCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHH---HHHHHHHHC
T ss_pred             EEEEEE-CCCCcCChhHeeEEEEEeHHHHhhhhhccCCcHHH---HHHHHHhcC
Confidence            555543 4555555 899999999999986432122 33344   444888753

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.74  E-value=2.4e-18  Score=138.35  Aligned_cols=115  Identities=23%  Similarity=0.229  Sum_probs=76.7

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe------CCCCEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI------PRIGQIY  215 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~------~~~~~~~  215 (275)
                      ++++++|.++++|||++|+   ..|.|.+|||++|+||++++||+||++||||+++.....+.....      +......
T Consensus         2 v~a~~vi~~d~kvLl~~r~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (152)
T d1k2ea_           2 IVTSGVLVENGKVLLVKHK---RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVIL   78 (152)
T ss_dssp             EEEEEECEETTEEEEEECT---TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEE
T ss_pred             EEEEEEEEECCEEEEEEEc---CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEE
Confidence            3455667788999999986   468899999999999999999999999999999876654433221      1111211


Q ss_pred             EEEEEEEcCCC--------C-CCCCCceeEEEecCCCCCCCCCCCcHHHHHHHH
Q 023914          216 IIFLAKLKRPH--------F-SPGPESSECRLFALDEIPFDSLAFSSISVTLQL  260 (275)
Q Consensus       216 ~~f~a~~~~~e--------~-~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~l  260 (275)
                      ..+........        . ..++|..+++|++.++++...+ ++..+.++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~-~~~~~~~l~~  131 (152)
T d1k2ea_          79 EEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIET-FPNVRKVVSL  131 (152)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCB-STTHHHHHHH
T ss_pred             EEEEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCC-CHHHHHHHHH
Confidence            11111100000        0 1236788999999999986543 5555555543

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.74  E-value=6.7e-18  Score=137.29  Aligned_cols=103  Identities=23%  Similarity=0.320  Sum_probs=67.3

Q ss_pred             EEEEEEE-ee-CCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE-EEeCCCCEEEEEE
Q 023914          142 MVVGCLI-EH-DKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ-LDIPRIGQIYIIF  218 (275)
Q Consensus       142 ~~V~viI-~~-~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~-~~~~~~~~~~~~f  218 (275)
                      +++++++ +. .++|||+|+...  .|.|++|||++|.|||+++||+||++||||+++........ ............|
T Consensus         3 ~v~Gaii~~~~~~kvLLvk~~~~--~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~   80 (151)
T d2a6ta2           3 PVRGAIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLY   80 (151)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESST--TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEE
T ss_pred             cEEEEEEEECCCCEEEEEEEeCC--CCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCceEEEE
Confidence            3444444 33 479999998642  67899999999999999999999999999998865433221 1211122223333


Q ss_pred             EEEEcCC--CCC--CCCCceeEEEecCCCCCC
Q 023914          219 LAKLKRP--HFS--PGPESSECRLFALDEIPF  246 (275)
Q Consensus       219 ~a~~~~~--e~~--~~~E~~d~~W~~~deL~~  246 (275)
                      .+.....  .+.  ..+|+.++.||++++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~  112 (151)
T d2a6ta2          81 IIPGISLDTRFESRTRKEISKIEWHNLMDLPT  112 (151)
T ss_dssp             EECCCCTTCCCC------EEEEEEEEGGGSTT
T ss_pred             EEEEeccCCcccccCCCccceEEEEEHHHhhh
Confidence            3332222  222  247899999999999985

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.6e-17  Score=140.52  Aligned_cols=129  Identities=19%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCC-CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe-C-CCCEEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI-P-RIGQIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~-~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~-~~~~~~~~f  218 (275)
                      .+|+++...++++||+++.+.+. ...|++|||++|+||++++||+||++||||+.+....+++.+.. + ..+..++.|
T Consensus        49 ~~v~vi~~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~  128 (186)
T d1vhza_          49 EAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIV  128 (186)
T ss_dssp             CEEEEEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEE
T ss_pred             cEEEEEEccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEE
Confidence            34444556688999999877663 45699999999999999999999999999999999988887643 2 234445556


Q ss_pred             EEEEc-CCCCCCC-CCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHHhhccc
Q 023914          219 LAKLK-RPHFSPG-PESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYFEHMTL  270 (275)
Q Consensus       219 ~a~~~-~~e~~~~-~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l~~~~~  270 (275)
                      ++... .+....+ +|..++.|++.+|+..    ..+.......|+.+++.|++.+.+
T Consensus       129 ~a~~~~~~~~~~de~E~~~~~~~~~~e~~~~i~~g~i~da~ti~al~~~~~~L~~~~r  186 (186)
T d1vhza_         129 VAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGR  186 (186)
T ss_dssp             EEEEEEECCCCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEecccccCCCCCCcEEEEEEEeHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCC
Confidence            56532 2333333 7788899999999764    233323344566777888887653

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.3e-18  Score=136.18  Aligned_cols=135  Identities=22%  Similarity=0.269  Sum_probs=97.2

Q ss_pred             CCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE------
Q 023914          132 CGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ------  205 (275)
Q Consensus       132 Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~------  205 (275)
                      ||-+.|.+..  +..+.+++.++||+++...  .+.|.+|||++++|||+++||+||++||||+++.....+..      
T Consensus        11 ~g~i~f~~~~--~~~~~~~~~~~LL~~~~~~--~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~   86 (153)
T d1xsba_          11 CGLIIFRRCL--IPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELN   86 (153)
T ss_dssp             EEEEEEEECS--SCSSSSTTEEEEEEEESST--TCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEE
T ss_pred             eEEEEEeccc--cccccCCCCEEEEEEecCC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeec
Confidence            4555554422  1112235679999998754  46799999999999999999999999999999876554432      


Q ss_pred             EEeCCCCEEEEEEEEEEcC--CCCCCCCCceeEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhhcccc
Q 023914          206 LDIPRIGQIYIIFLAKLKR--PHFSPGPESSECRLFALDEIPFDSLAFSSISVTLQLVRFYFEHMTLI  271 (275)
Q Consensus       206 ~~~~~~~~~~~~f~a~~~~--~e~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~li~~~l~~~~~i  271 (275)
                      ...........+|.+....  .++.+++|..+++|++.+++.. .+.++..+.+++.+.+|++.+.+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~-~~~~~~~~~iL~~~~~~L~~~~~~  153 (153)
T d1xsba_          87 YVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQ-LAQFKEMKAALQEGHQFLCSIEAL  153 (153)
T ss_dssp             EESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHH-HTCSHHHHHHHHHHHHHHTTSSCC
T ss_pred             ccccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHH-hcCCHHHHHHHHHHHHHHhcccCC
Confidence            2223333444556555543  3456678999999999999874 345788899999999999887764

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.72  E-value=5.5e-18  Score=140.00  Aligned_cols=103  Identities=26%  Similarity=0.304  Sum_probs=73.2

Q ss_pred             EEEEEEE-eeCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE--EE--e--------
Q 023914          142 MVVGCLI-EHDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ--LD--I--------  208 (275)
Q Consensus       142 ~~V~viI-~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~--~~--~--------  208 (275)
                      +.|+++| +++++|||+||...  +|.|.+|||+||.|||+++||+||++||||+++........  ..  +        
T Consensus        15 ~~Vg~vI~n~~~~vLL~kR~~~--~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   92 (165)
T d1jkna_          15 RNVGICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKL   92 (165)
T ss_dssp             EEEEEEEECTTSCEEEEEESSS--TTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHHH
T ss_pred             ccEEEEEEeCCCEEEEEEEcCC--CCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceeecee
Confidence            4555444 56789999999864  48899999999999999999999999999999865543221  10  0        


Q ss_pred             -----CC-CCEEEEEEEEEEcCCC--CCC------CCCceeEEEecCCCCCC
Q 023914          209 -----PR-IGQIYIIFLAKLKRPH--FSP------GPESSECRLFALDEIPF  246 (275)
Q Consensus       209 -----~~-~~~~~~~f~a~~~~~e--~~~------~~E~~d~~W~~~deL~~  246 (275)
                           +. .......|.+.....+  +..      ..|..+++||++++++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~  144 (165)
T d1jkna_          93 NIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID  144 (165)
T ss_dssp             HHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHH
T ss_pred             eeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHH
Confidence                 11 1234455666665443  221      24888999999999874

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=9.6e-18  Score=138.38  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             ccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccce
Q 023914          123 EKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS  201 (275)
Q Consensus       123 ~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~  201 (275)
                      +++...+....+....++. +|++++.+++++||+++.+.+ ....|++|||++|+||++++||+||++||||+.++...
T Consensus         7 g~~~~~~~~~~~~~v~~~~-aV~vl~~~~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~   85 (158)
T d1v8ya_           7 GRILNLALEGRYEIVEHKP-AVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTY   85 (158)
T ss_dssp             CSSEEEEEETTEEEEEECC-EEEEEEEETTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEE
T ss_pred             ccEEeeEEeeeEEEEecCC-EEEEEEEECCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeee
Confidence            3444444444544444444 455555668999999987665 35789999999999999999999999999999886444


Q ss_pred             eeEEEEeCC-CCEEEEEEEEEEcC-CCCCCC-CCceeEEEecCCCCCC
Q 023914          202 PFAQLDIPR-IGQIYIIFLAKLKR-PHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       202 ~~~~~~~~~-~~~~~~~f~a~~~~-~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      +...+..+. .+..++.|.+.... .+..++ +|..++.|++++|+..
T Consensus        86 l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~  133 (158)
T d1v8ya_          86 LFSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALE  133 (158)
T ss_dssp             EEEEESCTTTBCCEEEEEEEEEEEECC--------CEEEEECHHHHHH
T ss_pred             ecceecCCCcceEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHH
Confidence            444443332 23455667665443 333443 6788999999999763

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.7e-18  Score=135.36  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             eCCeEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCCEEEE--EEEEEEcCCCC
Q 023914          150 HDKKILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIGQIYI--IFLAKLKRPHF  227 (275)
Q Consensus       150 ~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~--~f~a~~~~~e~  227 (275)
                      .++.+||.++...  +|.|.+|||++|+|||+++||+||++||||+++....+++.+..........  .|.+....+..
T Consensus        23 ~~~~~lL~~~~~~--~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (135)
T d2fvva1          23 SEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDW  100 (135)
T ss_dssp             TCCEEEEEECSSC--TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSC
T ss_pred             CCCEEEEEEEeCC--CCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCccEEEEEEEEEeecCCC
Confidence            3456777777654  5889999999999999999999999999999999888888777665544333  23333222222


Q ss_pred             -CCCCCceeEEEecCCCCC
Q 023914          228 -SPGPESSECRLFALDEIP  245 (275)
Q Consensus       228 -~~~~E~~d~~W~~~deL~  245 (275)
                       ...+|..+++||+++|+.
T Consensus       101 ~~~~~e~~~~~W~~~~e~~  119 (135)
T d2fvva1         101 EDSVNIGRKREWFKIEDAI  119 (135)
T ss_dssp             HHHHHHCCCEEEEEHHHHH
T ss_pred             CCCCCceeEEEEEEHHHHH
Confidence             234677889999999876

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.7e-17  Score=133.30  Aligned_cols=101  Identities=18%  Similarity=0.303  Sum_probs=74.2

Q ss_pred             EEEEeeCCeEEEEEeccC--CCCCceee-eeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEE---EE--eCCC---CE
Q 023914          145 GCLIEHDKKILLCKRKIE--PSYGLWTL-PAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQ---LD--IPRI---GQ  213 (275)
Q Consensus       145 ~viI~~~~~iLL~rr~~~--p~~g~w~l-PgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~---~~--~~~~---~~  213 (275)
                      +.|++.++++||+||+..  ..+|.|.+ |||++++|||+++||+||++||||+++...+.+..   +.  .+..   ..
T Consensus         7 v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~~~~   86 (153)
T d1hzta_           7 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENE   86 (153)
T ss_dssp             EEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEE
T ss_pred             EEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccccccee
Confidence            345577899999999754  24799987 99999999999999999999999999876654331   11  2221   12


Q ss_pred             EEEEEEEEEcCCCCCCC-CCceeEEEecCCCCCC
Q 023914          214 IYIIFLAKLKRPHFSPG-PESSECRLFALDEIPF  246 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~~  246 (275)
                      .+.+|.+.. .+++.++ +|+.+++|++++||..
T Consensus        87 ~~~~~~~~~-~~~~~~~~~Ev~~~~W~~~~el~~  119 (153)
T d1hzta_          87 VCPVFAART-TSALQINDDEVMDYQWCDLADVLH  119 (153)
T ss_dssp             ECCEEEEEB-CSCCCCCTTTEEEEEEECHHHHHH
T ss_pred             EEEEEEEee-CCCccCChhheeEEEEeeHHHHHH
Confidence            233455543 4556666 7999999999999853

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.67  E-value=9.8e-17  Score=131.98  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=75.3

Q ss_pred             EEEEEEE-eeCCeEEEEEeccCC--CCCceeee-eEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCC----CCE
Q 023914          142 MVVGCLI-EHDKKILLCKRKIEP--SYGLWTLP-AGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPR----IGQ  213 (275)
Q Consensus       142 ~~V~viI-~~~~~iLL~rr~~~p--~~g~w~lP-gG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~----~~~  213 (275)
                      .+|.+++ +.++++||.||+...  .+|.|++| ||++++|||+++||+||++||||+++....++....+..    ...
T Consensus        29 ~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~  108 (162)
T d2o5fa1          29 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSS  108 (162)
T ss_dssp             EEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSS
T ss_pred             EEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceE
Confidence            3455544 567899999986542  47999887 999999999999999999999999998877766554422    234


Q ss_pred             EEEEEEEEEcCCCCCCC-CCceeEEEecCCCCC
Q 023914          214 IYIIFLAKLKRPHFSPG-PESSECRLFALDEIP  245 (275)
Q Consensus       214 ~~~~f~a~~~~~e~~~~-~E~~d~~W~~~deL~  245 (275)
                      .+++|.+... +.+.++ +|+.+++|++++|+.
T Consensus       109 ~~~~~~~~~~-~~~~~~~~Ev~~~~W~~~eel~  140 (162)
T d2o5fa1         109 FMCVYELRSD-ATPIFNPNDISGGEWLTPEHLL  140 (162)
T ss_dssp             EEEEEEEECS-SCCCCCTTTCSEEEEECHHHHH
T ss_pred             EEEEEEEecC-CCccCChhHeeEEEEeeHHHHH
Confidence            5566666654 344554 788999999999875

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.67  E-value=2.1e-16  Score=125.09  Aligned_cols=111  Identities=20%  Similarity=0.281  Sum_probs=80.7

Q ss_pred             EEEEEEEeeCCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEeCCCC--EEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDIPRIG--QIYIIF  218 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~f  218 (275)
                      +++++++++++++||.||.... .+|+|+||+|.+|.+|+ .+++.||++||+|+++...+.++.+...+.+  ..+.+|
T Consensus         6 v~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~   84 (127)
T d1rrqa2           6 LAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVF   84 (127)
T ss_dssp             EEEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEE
Confidence            4555666788999999997654 47999999999997777 7899999999999999988888877655554  455678


Q ss_pred             EEEEcCCCCCCCCCceeEEEecCCCCCCCCCCCcH-HHHHHH
Q 023914          219 LAKLKRPHFSPGPESSECRLFALDEIPFDSLAFSS-ISVTLQ  259 (275)
Q Consensus       219 ~a~~~~~e~~~~~E~~d~~W~~~deL~~~~l~~~s-~~~al~  259 (275)
                      .+....+.    .+..+.+|++++++.  .+++|. .+..++
T Consensus        85 ~~~~~~~~----~~~~~~~Wv~~~el~--~~~~p~~~~Ki~~  120 (127)
T d1rrqa2          85 PGRLVHGG----PVEEPYRLAPEDELK--AYAFPVSHQRVWR  120 (127)
T ss_dssp             EEEEECCS----CCCTTEEEEEGGGGG--GSCCCHHHHHHHH
T ss_pred             EEEECCCC----ccccceEEeeHHHHh--HCCCChHHHHHHH
Confidence            88776543    234578999999998  556654 444444

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=5.3e-16  Score=132.77  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             EEEEEEEeeCCeEEEEEeccCCC-CCceeeeeEEee-CCCCHHHHHHHHHHHHhCCccccceeeEEEEe-C-CCCEEEEE
Q 023914          142 MVVGCLIEHDKKILLCKRKIEPS-YGLWTLPAGYME-IGESAAEGAIRETWEEARADVEVQSPFAQLDI-P-RIGQIYII  217 (275)
Q Consensus       142 ~~V~viI~~~~~iLL~rr~~~p~-~g~w~lPgG~vE-~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~-~-~~~~~~~~  217 (275)
                      .++++.++++++|||+++.+.+. ...|++|+|.+| +||++++||+||++||||+.++...+++.+.. + .....++.
T Consensus        40 ~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~  119 (202)
T d1mqea_          40 AVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRV  119 (202)
T ss_dssp             EEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEE
T ss_pred             eEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEE
Confidence            33334456778999999876653 447999999999 79999999999999999999999998887632 2 22345566


Q ss_pred             EEEEEcC--CCCC--CCCCceeEEEecCCCCCC----CCCCCcHHHHHHHHHHHHH
Q 023914          218 FLAKLKR--PHFS--PGPESSECRLFALDEIPF----DSLAFSSISVTLQLVRFYF  265 (275)
Q Consensus       218 f~a~~~~--~e~~--~~~E~~d~~W~~~deL~~----~~l~~~s~~~al~li~~~l  265 (275)
                      |++....  +...  .++|..++.|++++|+..    .++.....-.++.++..+.
T Consensus       120 fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~I~d~~ti~al~~~~~~~  175 (202)
T d1mqea_         120 YLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAVHAVT  175 (202)
T ss_dssp             EEEEEEEECCC----------CEEEEEHHHHHHHHTTTSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Confidence            6666322  2222  224455799999999642    3444333334444444433

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.61  E-value=6e-16  Score=130.81  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=76.6

Q ss_pred             EEEEEEEe-e-CCeEEEEEeccCC--CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe--CCCCEEE
Q 023914          142 MVVGCLIE-H-DKKILLCKRKIEP--SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI--PRIGQIY  215 (275)
Q Consensus       142 ~~V~viI~-~-~~~iLL~rr~~~p--~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~--~~~~~~~  215 (275)
                      .+|.+++. + +.+|||++|+...  .+|.|+||||++|.|||+++||+||++||||+....++.++..+.  ...+...
T Consensus        33 aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~V  112 (187)
T d1nqza_          33 AAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHV  112 (187)
T ss_dssp             EEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEE
T ss_pred             cEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccEE
Confidence            34444443 2 3479999998653  479999999999999999999999999999999999998886541  2234455


Q ss_pred             EEEEEEEcCCC---CCCCCCceeEEEecCCCCCC
Q 023914          216 IIFLAKLKRPH---FSPGPESSECRLFALDEIPF  246 (275)
Q Consensus       216 ~~f~a~~~~~e---~~~~~E~~d~~W~~~deL~~  246 (275)
                      ..|.+.+....   ...++|.+++.|++.+++..
T Consensus       113 ~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~  146 (187)
T d1nqza_         113 TPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA  146 (187)
T ss_dssp             EEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHH
T ss_pred             EEEEEEECCccccccccCCcceEEEeccHHHHhc
Confidence            55666654322   33457999999999988753

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=6e-15  Score=126.81  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             cccCCcEEEEEEEee-CCeEEEEEeccCCC------CCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEE-
Q 023914          136 AYQNPKMVVGCLIEH-DKKILLCKRKIEPS------YGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLD-  207 (275)
Q Consensus       136 ~y~~p~~~V~viI~~-~~~iLL~rr~~~p~------~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~-  207 (275)
                      .+.++..++++++++ +++++|+++.+.|.      ...|++|||.+|+||++++||+||+.||||+.++.+.+++.+. 
T Consensus        53 v~~~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~  132 (209)
T d1g0sa_          53 IFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLA  132 (209)
T ss_dssp             EEECCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEES
T ss_pred             EEecCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecccccc
Confidence            455666666665554 58899999987552      2368999999999999999999999999999999988888663 


Q ss_pred             eCC-CCEEEEEEEEEEcCCCC-----CCC-CCceeEEEecCCCCC
Q 023914          208 IPR-IGQIYIIFLAKLKRPHF-----SPG-PESSECRLFALDEIP  245 (275)
Q Consensus       208 ~~~-~~~~~~~f~a~~~~~e~-----~~~-~E~~d~~W~~~deL~  245 (275)
                      .|. .+..++.|.++......     ..+ +|..++.|++.+|+.
T Consensus       133 spg~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~  177 (209)
T d1g0sa_         133 SPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAY  177 (209)
T ss_dssp             CTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHH
T ss_pred             CCcccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHH
Confidence            222 24667778887543221     112 566689999999964

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.9e-13  Score=122.78  Aligned_cols=101  Identities=21%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             eEEEEEeccCCCCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccce---------------------eeEEEEeCC-
Q 023914          153 KILLCKRKIEPSYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQS---------------------PFAQLDIPR-  210 (275)
Q Consensus       153 ~iLL~rr~~~p~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~---------------------~~~~~~~~~-  210 (275)
                      ++||++|+   ..|.|.||||+||+||++++||+||+.||||+.+....                     +.+.++.+. 
T Consensus       140 qvLlIkR~---d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprn  216 (292)
T d1q33a_         140 QFVAIKRK---DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN  216 (292)
T ss_dssp             EEEEEECT---TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTC
T ss_pred             EEEEEEec---CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCC
Confidence            58999987   46889999999999999999999999999999875321                     122222221 


Q ss_pred             -CC--EEEEEEEEEEcCCC------CCCCCCceeEEEecCCCCCCCCCCCcHHHHHHH
Q 023914          211 -IG--QIYIIFLAKLKRPH------FSPGPESSECRLFALDEIPFDSLAFSSISVTLQ  259 (275)
Q Consensus       211 -~~--~~~~~f~a~~~~~e------~~~~~E~~d~~W~~~deL~~~~l~~~s~~~al~  259 (275)
                       .+  ...++|.+....++      +..++|+.+++|++.++++  ++.+++. ..++
T Consensus       217 td~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~--~L~~~H~-~il~  271 (292)
T d1q33a_         217 TDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKL--KLYASHS-QFIK  271 (292)
T ss_dssp             CSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTC--CCSTTHH-HHHH
T ss_pred             CCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccc--cchhhHH-HHHH
Confidence             12  34456777765543      2345899999999999988  5555543 3344

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.48  E-value=5.7e-14  Score=119.52  Aligned_cols=119  Identities=15%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             ccceeecCCCCCccccCCcEEEEEEEeeCCeEEEEEeccCCCCCceeeeeEEeeCCCC-HHHHHHHHHHHHhCCccccce
Q 023914          123 EKMRAICTVCGKIAYQNPKMVVGCLIEHDKKILLCKRKIEPSYGLWTLPAGYMEIGES-AAEGAIRETWEEARADVEVQS  201 (275)
Q Consensus       123 ~~~~~~C~~Cg~~~y~~p~~~V~viI~~~~~iLL~rr~~~p~~g~w~lPgG~vE~GEs-~eeAa~REl~EEtGl~v~~~~  201 (275)
                      .+++..|..+  .+++++...++. +..+..||+++|.    .|.|++|||+||+||+ +++||.||++||||+.+...+
T Consensus        17 ~g~r~a~~~~--~~~~~~~~~~~~-~~~~~~vl~~~r~----~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~   89 (196)
T d1u20a1          17 EGYKHACHAL--LHAPSQAKLFDR-VPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE   89 (196)
T ss_dssp             SSCEEEEEEE--EEEECCCEETTT-EECCEEEEEEEET----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC
T ss_pred             CCcceEEEEE--EEcCCCceEEEE-ecCCcEEEEEEec----CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEE
Confidence            4566666444  567777766543 3446788888875    5899999999999996 789999999999999887654


Q ss_pred             e-----eEEEEeCCC-CEEEEEEEEEEcCCC----------CC-CCCCceeEEEecCCCCCCCC
Q 023914          202 P-----FAQLDIPRI-GQIYIIFLAKLKRPH----------FS-PGPESSECRLFALDEIPFDS  248 (275)
Q Consensus       202 ~-----~~~~~~~~~-~~~~~~f~a~~~~~e----------~~-~~~E~~d~~W~~~deL~~~~  248 (275)
                      +     +........ ....++|.+.+...+          .. ...|..++.|++..++....
T Consensus        90 l~~~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d~~  153 (196)
T d1u20a1          90 VTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRV  153 (196)
T ss_dssp             CCGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSS
T ss_pred             EEeeEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcccc
Confidence            3     444444333 455566666653221          11 12678899999999997543

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=2.3e-13  Score=114.89  Aligned_cols=107  Identities=16%  Similarity=0.148  Sum_probs=76.2

Q ss_pred             ccCCcEEEEEEEe-eCCeEEEEEeccCC-------CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCCccccceeeEEEEe
Q 023914          137 YQNPKMVVGCLIE-HDKKILLCKRKIEP-------SYGLWTLPAGYMEIGESAAEGAIRETWEEARADVEVQSPFAQLDI  208 (275)
Q Consensus       137 y~~p~~~V~viI~-~~~~iLL~rr~~~p-------~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl~v~~~~~~~~~~~  208 (275)
                      +.++..++++..+ .++++||+|+.+.|       ..-.|++|||.+| ||++++||+||+.||||+.+..+.+++.+ +
T Consensus        40 ~~~~~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~-~  117 (189)
T d1viua_          40 YDRGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL-Y  117 (189)
T ss_dssp             EECCCEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEE-E
T ss_pred             EecCCEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEccee-e
Confidence            4455544444443 56899999987643       1345789999887 66789999999999999999999999876 4


Q ss_pred             CC---CCEEEEEEEEEEcCCCC-C----CCCCceeEEEecCCCCC
Q 023914          209 PR---IGQIYIIFLAKLKRPHF-S----PGPESSECRLFALDEIP  245 (275)
Q Consensus       209 ~~---~~~~~~~f~a~~~~~e~-~----~~~E~~d~~W~~~deL~  245 (275)
                      +.   .+..++.|+|+..+... .    .++|..++.|++.+|+.
T Consensus       118 ~spG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~  162 (189)
T d1viua_         118 MSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQAL  162 (189)
T ss_dssp             SCTTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHH
T ss_pred             cCccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHH
Confidence            43   34677788888654321 1    23577789999999865

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.2e-12  Score=101.84  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             CCeEEEEEeccCC-CCCceeeeeEEeeCCCCHHHHHHHHHHHHhCC--ccccceeeEEEEeCCC--CEEEEEEEEEEcCC
Q 023914          151 DKKILLCKRKIEP-SYGLWTLPAGYMEIGESAAEGAIRETWEEARA--DVEVQSPFAQLDIPRI--GQIYIIFLAKLKRP  225 (275)
Q Consensus       151 ~~~iLL~rr~~~p-~~g~w~lPgG~vE~GEs~eeAa~REl~EEtGl--~v~~~~~~~~~~~~~~--~~~~~~f~a~~~~~  225 (275)
                      +++|||.||.... .+|+|+||+|.++.||+.++++.||..+|.+.  .+.....++.+.+.+.  ...+.+|.+.+..+
T Consensus        26 ~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH~~~~~~v~~~~~~~~  105 (142)
T d1x51a1          26 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ  105 (142)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred             CCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCCcceEEEEEEEEEeCC
Confidence            6799999997654 48999999999999999988887776666554  4455556665554444  46677888888776


Q ss_pred             CCCCCCCceeEEEecCCCCCCCCCCCcH
Q 023914          226 HFSPGPESSECRLFALDEIPFDSLAFSS  253 (275)
Q Consensus       226 e~~~~~E~~d~~W~~~deL~~~~l~~~s  253 (275)
                      +... .|..+.+|++++++.  .+++|+
T Consensus       106 ~~~~-~~~~~~~W~~~~el~--~~~lp~  130 (142)
T d1x51a1         106 TPVT-TVPPGARWLTQEEFH--TAAVST  130 (142)
T ss_dssp             CCCC-CCCTTEEEEEHHHHH--HSCCCH
T ss_pred             Cccc-ccCccCEEeeHHHcc--ccCCCH
Confidence            5433 566789999999998  456666

>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: NADH pyrophosphatase intervening domain
family: NADH pyrophosphatase intervening domain
domain: NADH pyrophosphatase intervening domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=2.5e-05  Score=44.12  Aligned_cols=29  Identities=21%  Similarity=0.724  Sum_probs=26.2

Q ss_pred             CCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          106 FCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       106 fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ||+.||+++...    ..+|+..|..|...+||
T Consensus         1 fCGYCGh~Mh~s----~tEwa~LC~hC~eRYYP   29 (29)
T d1vk6a4           1 YCGYCGHEMYPS----KTEWAMLCSHCRERYYP   29 (29)
T ss_dssp             BCTTTCCBEEEC----SSSSCEEESSSSCEECC
T ss_pred             CccccCCccccc----hhHHHHHHHHHHhccCC
Confidence            899999998776    67899999999999987

>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=4.1e-05  Score=56.84  Aligned_cols=68  Identities=15%  Similarity=0.111  Sum_probs=46.4

Q ss_pred             ecCCCCcccccccccccccccccccccccccccee-----ecceeecccccccCCCCCccHHHHHHHHHhhhhcCC
Q 023914           35 STNPLPYSTARRHEIVSKTDSLVSPAFLTRRTRCF-----RASRVCATRSESNQDATSSHPSSAAVHSAGNVLKIS  105 (275)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~~~~~~~~~~~~a~~l~~w~~~~~  105 (275)
                      .-+.||++.+...+.+.+.   ..++..-....+|     ....+++||+++++|++.+.+++||+|+.+|.++|+
T Consensus        25 ~~g~lP~g~~~~l~l~~~~---~~~iG~~~g~p~~~v~~~~~~~~~~LR~ll~~~~~lF~lagRA~Qi~~w~rtHr   97 (97)
T d1vk6a3          25 PKGELPYGEAANFDLVGQR---ALQIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHK   97 (97)
T ss_dssp             GGGSCCEEEGGGGTCTTCE---EEEEEESSSSEEEEEECCCSSCEECTTHHHHHCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             eCCCCCCCchhhcCCCcce---EEEeeeECCeEEEEEeeCCCCCccCHHHHhCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            3566787777765544432   2222222222222     245689999999999999999999999999999986

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27a
domain: Ribosomal protein S27ae
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.08  E-value=0.0014  Score=42.81  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=26.9

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      +..++||+||.-.-+.    +...|..|..||...|..
T Consensus        16 r~~k~CP~CG~GvFmA----~H~dR~~CGKCgyTefkk   49 (55)
T d2k4xa1          16 RKHRFCPRCGPGVFLA----EHADRYSCGRCGYTEFKK   49 (55)
T ss_dssp             CSSCCCTTTTTTCCCE----ECSSEEECTTTCCCEECC
T ss_pred             EecCcCcCCCCcEEee----ecCCCccccCCcccEEec
Confidence            4578999999876555    345689999999998854

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.29  E-value=0.019  Score=34.57  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=25.2

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCCccccC
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQN  139 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~~  139 (275)
                      ...-||+|++.....     ++...+|+.|+++.-+.
T Consensus         2 ~lP~CP~C~seytYe-----dg~l~vCPeC~hEW~~~   33 (38)
T d2akla2           2 TLPPCPQCNSEYTYE-----DGALLVCPECAHEWSPN   33 (38)
T ss_dssp             CSCCCTTTCCCCCEE-----CSSSEEETTTTEEECTT
T ss_pred             CCCcCCCCCCcceEc-----CCCEEECCcccCcCCcc
Confidence            346799999998665     56679999999886554

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.031  Score=38.29  Aligned_cols=30  Identities=27%  Similarity=0.516  Sum_probs=23.2

Q ss_pred             hcCCCCcCCCCCCcccccCCCccceeecCCCCCc
Q 023914          102 LKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKI  135 (275)
Q Consensus       102 ~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~  135 (275)
                      .++++||.||..+...    .+.....|+.||..
T Consensus        16 ~~~k~CP~C~~~~~~~----~~~~~~~C~~C~~~   45 (73)
T d2ct7a1          16 PKFLWCAQCSFGFIYE----REQLEATCPQCHQT   45 (73)
T ss_dssp             CCEECCSSSCCCEECC----CSCSCEECTTTCCE
T ss_pred             CCCCCCCCCCCEeEEC----CCCCEEEcCCCCCe
Confidence            3568999999987654    45677899999864

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=89.04  E-value=0.08  Score=34.87  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=24.3

Q ss_pred             hhcCCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          101 VLKISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       101 ~~~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      ....--||.|++++...    ++....+|+.|+. .||
T Consensus         7 LL~iL~CP~ck~~L~~~----~~~~~Lvc~~~~~-~YP   39 (59)
T d2jnya1           7 LLEVLACPKDKGPLRYL----ESEQLLVNERLNL-AYR   39 (59)
T ss_dssp             GTCCCBCTTTCCBCEEE----TTTTEEEETTTTE-EEE
T ss_pred             HHHHhcCCCCCCEeEEe----CCCCEEEcCccCc-ccc
Confidence            34456799999999876    4556789999984 343

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=84.82  E-value=0.21  Score=32.72  Aligned_cols=23  Identities=22%  Similarity=0.627  Sum_probs=17.9

Q ss_pred             cCCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          103 KISFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       103 ~~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      ....|+.||+....+         ++|+.||+
T Consensus        28 ~l~~C~~CG~~~~pH---------rvC~~CG~   50 (59)
T d2j0151          28 TLVPCPECKAMKPPH---------TVCPECGY   50 (59)
T ss_dssp             CCBCCSSSSSCBCTT---------CBCTTTCC
T ss_pred             ceeECCCCCCcccce---------eECCCCCe
Confidence            457899999985333         58999995

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=84.39  E-value=0.21  Score=32.80  Aligned_cols=29  Identities=24%  Similarity=0.507  Sum_probs=22.1

Q ss_pred             CCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          105 SFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       105 ~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      --||.|++++...    ++....+|..|+ ..||
T Consensus         8 L~CP~ck~~L~~~----~~~~~Lvc~~~~-l~YP   36 (59)
T d2hf1a1           8 LVCPLCKGPLVFD----KSKDELICKGDR-LAFP   36 (59)
T ss_dssp             CBCTTTCCBCEEE----TTTTEEEETTTT-EEEE
T ss_pred             hcCCCCCCeeeEe----CCCCEEecCCcC-cccc
Confidence            4599999999876    455668999998 4454

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=82.15  E-value=0.21  Score=32.70  Aligned_cols=22  Identities=32%  Similarity=0.818  Sum_probs=16.9

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCC
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGK  134 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~  134 (275)
                      ...|+.||+.....         ++|+.||+
T Consensus        29 l~~C~~CG~~~lpH---------rvC~~CG~   50 (58)
T d2zjrz1          29 LTECPQCHGKKLSH---------HICPNCGY   50 (58)
T ss_dssp             CEECTTTCCEECTT---------BCCTTTCB
T ss_pred             eeECCCCCCCccce---------eeCCCCCc
Confidence            46799999985333         68999994

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=81.80  E-value=0.34  Score=31.71  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=22.7

Q ss_pred             CCCCcCCCCCCcccccCCCccceeecCCCCCcccc
Q 023914          104 ISFCQWCGGQTKHEVPHGEEKMRAICTVCGKIAYQ  138 (275)
Q Consensus       104 ~~fC~~CG~~~~~~~~~~~~~~~~~C~~Cg~~~y~  138 (275)
                      .--||.|++++...    ++....+|..|+ ..||
T Consensus         6 iL~CP~ck~~L~~~----~~~~~Lvc~~~~-laYP   35 (59)
T d2pk7a1           6 ILACPICKGPLKLS----ADKTELISKGAG-LAYP   35 (59)
T ss_dssp             TCCCTTTCCCCEEC----TTSSEEEETTTT-EEEE
T ss_pred             heECCCCCCcceEe----CCCCEEecCCcC-cccc
Confidence            35699999999876    445568999997 4554