Citrus Sinensis ID: 023962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFTP
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccEEEEccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHcccccccccccEEEEEEEEEEEcccccEEEEEEcccccccEEEEEEEEEccccccEEEEEEEccccccccEEcccccccEEEEcccccccccEEEEEEEEcccEEEEEccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHccccccccEEEEEEcccccccccEEEEEEccccccccccccccccccHHHHHHHHcccccHHHHHcccEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEccccccEEEEEEEEccccccccEEccccccHccHccccccccccEEEEEEEcccccEEEEccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
mahvfrypiSFFTLVFMFPlflhscwcfnpklLNITMaesgsdwspagatwygsptgagsdggacgygaaveqapfsalisaggpslyksgkgcgacyqvkcthpecsgnpvtvvitdecpggpcvsesvhfdlsgtaFGAMaisgkadqlrnvgvlQIQHrrvecnypgmriafhvdsgsnpnyFATLIEyedgdgdlaSVDLQQaldssdswlpmQRSWGAVWklnygstlrapfsLRLTAAESGKALVakgvipagwqpgqtyrslvnftp
Flexible Loop (DISEMBL)
MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVipagwqpgqtyrslvnftp
Low Complexity Region (SEG)
MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTgagsdggacgygaaVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFTP
Disordered region (IsUnstruct)
**HVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLV****
Disordered Region (DISOPRED)
*********SFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFT*
Disordered Region (DISEMBL)
MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFTP
Disordered Region (DISPRO)
*AHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFT*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9SHY6	273	Putative expansin-B2 OS=A	yes	no	0.886	0.890	0.685	8e-94
Q7XT40	264	Expansin-B15 OS=Oryza sat	yes	no	0.959	0.996	0.608	4e-89
Q5W6Z9	264	Expansin-B18 OS=Oryza sat	yes	no	0.959	0.996	0.597	1e-88
Q9SHD1	259	Expansin-B4 OS=Arabidopsi	no	no	0.919	0.972	0.547	2e-79
Q6H677	273	Putative expansin-B14 OS=	no	no	0.905	0.908	0.588	8e-78
Q7XT39	275	Expansin-B5 OS=Oryza sati	no	no	0.835	0.832	0.608	6e-77
Q6H676	292	Expansin-B11 OS=Oryza sat	no	no	0.784	0.736	0.630	2e-75
Q10G40	313	Expansin-B12 OS=Oryza sat	no	no	0.927	0.811	0.538	2e-74
Q9M203	264	Expansin-B5 OS=Arabidopsi	no	no	0.897	0.931	0.480	1e-70
Q336T5	268	Expansin-B3 OS=Oryza sati	no	no	0.817	0.835	0.559	4e-70

>sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2

 Score =  343 bits (880), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 170/248 (68%), Positives = 195/248 (78%), Gaps = 5/248 (2%)

Query: 27  CFNPKLLNITMAE-SGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGP 85
           CF+PK  NI+ A  S SDWS AG+TWYG+PTG GSDGGACGYG AV Q PFS ++SAGGP
Sbjct: 29  CFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGP 88

Query: 86  SLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAI 144
           SL+KSGKGCGACYQVKCT    CS NPVTVVITDECPG  CV ESVHFDLSGTAFGAMAI
Sbjct: 89  SLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPG--CVKESVHFDLSGTAFGAMAI 146

Query: 145 SGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDL 204
           SG+  QLRNVG LQI +++VECNY G  + F VD GSN N FA L+ Y +GDG++  ++L
Sbjct: 147 SGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIEL 206

Query: 205 QQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQ 264
           +QALD SD WL M +SWGAVWKL+  S LRAP SLR+T+ ESGK +VA  VIPA WQPG 
Sbjct: 207 KQALD-SDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGA 265

Query: 265 TYRSLVNF 272
            Y+S VNF
Sbjct: 266 IYKSNVNF 273

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XT40|EXB15_ORYSJ Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2

 Score =  327 bits (839), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 202/273 (73%), Gaps = 10/273 (3%)

Query: 1   MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGS 60
           MA  F+  +S F ++    +    C        +I      S WS  GATWYG+  GAGS
Sbjct: 1   MASRFQLILSTFVVIAAVTMLPRPC-------ASIEFHRKLSSWSNGGATWYGAANGAGS 53

Query: 61  DGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDE 119
           DGGACGY  AV QAPFS++I+AG PS+YKSG GCG+CYQVKCT +  CSGNPVTVV+TDE
Sbjct: 54  DGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDE 113

Query: 120 CPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDS 179
           CPGGPC+SE VHFDLSGTAFGAMA  G+ADQLR  GVLQIQ+ RV CN+ G+++ F VD 
Sbjct: 114 CPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDV 173

Query: 180 GSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSL 239
           GSNPNYFA L++YE+GDGDL+ V+L Q   +  +W  MQ+SWGAVWKLN GS L+APFS+
Sbjct: 174 GSNPNYFAVLVKYENGDGDLSGVELMQT-GAGAAWTQMQQSWGAVWKLNAGSALQAPFSI 232

Query: 240 RLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           RLT++ SGK LVA  VIP+GW+PG +Y S VNF
Sbjct: 233 RLTSS-SGKTLVASNVIPSGWKPGMSYISTVNF 264

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5W6Z9|EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/273 (59%), Positives = 204/273 (74%), Gaps = 10/273 (3%)

Query: 1   MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGS 60
           M   F+  +S F ++  F L    C        +I      S WS  GATWYG+  GAGS
Sbjct: 1   MNSKFQLILSTFVVIAAFTLLPRPC-------ASIEFHRKLSSWSNGGATWYGAANGAGS 53

Query: 61  DGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDE 119
           DGGACGY AAV+QAPFS++I+AG PS+YKSG GCG+CYQVKC+ +  CSGNPVTVV+TDE
Sbjct: 54  DGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDE 113

Query: 120 CPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDS 179
           CPGGPC+SE VHFDLSGTAFGAMA  G+ADQLR  GVLQIQ+ RV CN+ G+ + F VD+
Sbjct: 114 CPGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDA 173

Query: 180 GSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSL 239
           GSNP+YFA L++YE+GDGDL+ +DL Q   +  +W PMQ+SWGAVWKL+ G+ L+AP S+
Sbjct: 174 GSNPSYFAVLVKYENGDGDLSGMDLMQT-GAGAAWTPMQQSWGAVWKLSAGAALQAPLSI 232

Query: 240 RLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           RLT++ SGK LVA  VIP+GW+PG +Y S VN+
Sbjct: 233 RLTSS-SGKTLVASNVIPSGWKPGASYTSTVNY 264

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SHD1|EXPB4_ARATH Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1

 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/263 (54%), Positives = 188/263 (71%), Gaps = 11/263 (4%)

Query: 11  FFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAA 70
           +F L+ +F + L  C+C N     I +A SG+    AG TWYG P GAGS GGACGYG+A
Sbjct: 7   YFALLALFAVSLKFCYCQNE---TIDVAGSGT----AGVTWYGEPFGAGSTGGACGYGSA 59

Query: 71  VEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCVSES 129
           V   P  A++SAGGPSL+ +GKGCG CYQV C  HP CSG+P+TV ITDECPGGPC SE 
Sbjct: 60  VANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEP 119

Query: 130 VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATL 189
           VH DLSG A GA+A  G+ADQLR+ GV+++ ++R  C Y G  I F +D+G+NP Y + +
Sbjct: 120 VHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFV 179

Query: 190 IEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKA 249
           +EYE+GDGDL++V++Q A     S++ MQ    AVWK+N GS LR PF++RLT+ ES K 
Sbjct: 180 VEYENGDGDLSNVEIQPA---GGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKV 236

Query: 250 LVAKGVIPAGWQPGQTYRSLVNF 272
           +VA  VIPA W+P ++YRS+VNF
Sbjct: 237 IVAYNVIPANWKPDESYRSIVNF 259

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H677|EXB14_ORYSJ Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1

 Score =  290 bits (742), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 149/253 (58%), Positives = 182/253 (71%), Gaps = 5/253 (1%)

Query: 24  SCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAG 83
           +C      + ++      S WS  GATWYG   G+G+DGGACGY   V Q PF+++I+AG
Sbjct: 18  ACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAG 77

Query: 84  GPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAM 142
            PS+Y+SGKGCG+CYQVKC+ +P CSG PVTVV+TD CPGG C+ E VHFDLSGTAFGAM
Sbjct: 78  SPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCPGGACLEEPVHFDLSGTAFGAM 137

Query: 143 AISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASV 202
           A  G+ DQLRN G L +Q+ RV C + G+ IAF VD+GSN  Y A L+E EDGDGDL++V
Sbjct: 138 AKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAV 197

Query: 203 DLQQ--ALDSSDSWLPMQRSWGAVWKLNYG-STLRAPFSLRLTAAESGKALVAKGVIPAG 259
           DL Q        SW  MQ+SWGAVWK N G + L+AP S+RLT+  SG+ LVA  VIPAG
Sbjct: 198 DLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMSIRLTSG-SGRTLVASNVIPAG 256

Query: 260 WQPGQTYRSLVNF 272
           WQPG TYRS+VNF
Sbjct: 257 WQPGGTYRSIVNF 269

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XT39|EXPB5_ORYSJ Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2

 Score =  287 bits (735), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 177/235 (75%), Gaps = 6/235 (2%)

Query: 41  GSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQV 100
           G  WS  GATWYG P G GS+GGACGY +AV Q PFS++I+AGGPSL+K+GKGCG+CYQ+
Sbjct: 42  GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQI 101

Query: 101 KCT-HPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQI 159
           KCT +  CSG PVTVVITD CPGG C++E+ HFD+SGTAFGAMA  G  D+LR+ GVL+I
Sbjct: 102 KCTGNRACSGRPVTVVITDSCPGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKI 161

Query: 160 QHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQR 219
           Q++RV C +  M +AF VD+GSNP Y A L++Y +GDGDLA+V + +A      W  MQ+
Sbjct: 162 QYKRVPCRFA-MNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEA-RGGGGWKAMQQ 219

Query: 220 SWGAVWKL--NYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           SWGA W+L  N G  L  PFS+RLT+  SGK LVA  VIP+GWQ G TYRS VN+
Sbjct: 220 SWGATWRLNSNTGKPLSPPFSIRLTSG-SGKVLVANNVIPSGWQAGLTYRSTVNY 273

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H676|EXB11_ORYSJ Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/222 (63%), Positives = 169/222 (76%), Gaps = 7/222 (3%)

Query: 55  PTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVT 113
           P G GSDGGACGY  AV Q PFS++I+AG PSLYK GKGCGACY+VKCT +  CSG P T
Sbjct: 75  PNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAACSGQPAT 134

Query: 114 VVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRI 173
           VVITDECPGG C++ + HFD+SGT+ GAMA  G AD+LR  G+LQ+Q+RRV C Y G+ I
Sbjct: 135 VVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNI 194

Query: 174 AFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKL--NYGS 231
           AF VD G+NP YF  LIE+EDGDGDL +VDL +A      W PM ++WGA+W+   N G 
Sbjct: 195 AFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEA---GCGWTPMVQNWGALWRYNSNTGK 251

Query: 232 TLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFT 273
            L+APFSLRLT ++SGK LVA  VIPA W+PG TYRSLVN++
Sbjct: 252 ALKAPFSLRLT-SDSGKVLVANNVIPASWKPGVTYRSLVNYS 292

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10G40|EXB12_ORYSJ Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/273 (53%), Positives = 182/273 (66%), Gaps = 19/273 (6%)

Query: 6   RYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGAC 65
           R  + +F  + +       C        +I +    S WS   ATWYG P GAGS+GGAC
Sbjct: 8   RLQLLYFIAITVLASVFQPC-------TSIELHRELSGWSNGIATWYGDPNGAGSEGGAC 60

Query: 66  GYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGP 124
           GY  AV+Q PFS+ I+AG P +Y SGKGCG+CY+V C   E CSG PVTVVITD+ PGGP
Sbjct: 61  GYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGPGGP 120

Query: 125 CVSESV---------HFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAF 175
           C+ E V         HFD+SGTAFGAMA  G+ADQLR  G+LQIQ+ RVEC + G+ + F
Sbjct: 121 CLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTF 180

Query: 176 HVDSGSNPNYFATLIEYEDGDGDLASVDLQQ-ALDSSDSWLPMQRSWGAVWKLNYGSTLR 234
            VDSGSNPNY A L+EY+D D DLA+VD+      +S SW+PMQ+SWGAVW+LN GS L+
Sbjct: 181 VVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGSALQ 240

Query: 235 APFSLRLTAAESGKALVAKGVIPAGWQPGQTYR 267
            PFS+RLT + SG+  VA   IPAGW PG  Y+
Sbjct: 241 GPFSVRLTFS-SGQMFVASNAIPAGWNPGMAYQ 272

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M203|EXPB5_ARATH Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2

 Score =  266 bits (680), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 171/262 (65%), Gaps = 16/262 (6%)

Query: 11  FFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAA 70
              L   F + L  C+C N            + W+ AG TWYG   G G+ GGACGYG A
Sbjct: 12  IVVLTTFFAISLKPCYCHNK-----------THWNTAGITWYGDREGPGTTGGACGYGDA 60

Query: 71  VEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESV 130
           V + P+  ++SAGGPSL+K GKGCGACY++KC HP C+  P+ V+I+DECPG  C  ESV
Sbjct: 61  VAKHPYRCMVSAGGPSLFKDGKGCGACYRLKCDHPLCTKKPIKVMISDECPG--CTKESV 118

Query: 131 HFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLI 190
           HFDLSG AFGA+A  GK DQLRN+G L++ ++R  C +P   IA HVD+G+NP Y +  +
Sbjct: 119 HFDLSGKAFGALAKRGKGDQLRNLGELKVSYKRACCKHPKTMIAIHVDAGANPYYMSFAV 178

Query: 191 EYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKAL 250
           ++ +GDG+ A +++Q A      ++ M+    AVW+L+ G  L+ PF++RLT+A SGK +
Sbjct: 179 KFANGDGNFACIEVQPA---GGQYMKMEEMRSAVWRLSPGVPLKGPFNIRLTSAVSGKKI 235

Query: 251 VAKGVIPAGWQPGQTYRSLVNF 272
           +AKGVIP  W PG  Y S VNF
Sbjct: 236 IAKGVIPEKWSPGAIYHSKVNF 257

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q336T5|EXPB3_ORYSJ Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2

 Score =  265 bits (676), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 164/234 (70%), Gaps = 10/234 (4%)

Query: 43  DWSPAGATWYGSPTGAG--SDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQV 100
           +W  A ATWYG+PTGAG   DGGACG+     Q PFS++ S G   ++K GKGCG+CYQ+
Sbjct: 41  NWEVARATWYGAPTGAGPDDDGGACGF-KNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQI 99

Query: 101 KC-THPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQI 159
           +C  HP CSGNP TV+ITD            HFDLSGTAFGAMA  G+ DQLR+ G++ I
Sbjct: 100 RCVNHPACSGNPETVIITDM---NYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDI 156

Query: 160 QHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQR 219
           Q +RV CN+PG+++ FHV+ GSNP YFA L+EYEDGDGD+  VDL +A  +S SW PM+ 
Sbjct: 157 QFKRVPCNFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEA--NSQSWTPMRE 214

Query: 220 SWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFT 273
           SWG++W+L+    L APFSLR+T  ESGK LVA  VIPA W P   YRS V ++
Sbjct: 215 SWGSIWRLDSNHRLTAPFSLRIT-NESGKQLVASQVIPANWAPMAVYRSFVQYS 267

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
224129938	274	hypothetical protein POPTRDRAFT_572072 [	0.963	0.963	0.742	1e-112
255541170	272	Beta-expansin 3 precursor, putative [Ric	0.948	0.955	0.740	1e-112
83778373	276	beta expansin 1 precursor [Solanum tuber	0.959	0.952	0.722	1e-110
350538529	275	beta-expansin precursor [Solanum lycoper	0.959	0.956	0.721	1e-109
225453525	273	PREDICTED: putative expansin-B2 [Vitis v	0.890	0.893	0.778	1e-106
449431962	273	PREDICTED: putative expansin-B2-like [Cu	0.981	0.985	0.659	1e-100
225453519	273	PREDICTED: putative expansin-B2 [Vitis v	0.897	0.901	0.776	6e-99
70779677	210	putative beta-expansin [Eucalyptus globu	0.755	0.985	0.779	4e-93
351726379	277	cytokinin induced message [Glycine max]	0.981	0.971	0.647	2e-92
358248036	277	putative expansin-B2-like [Glycine max]	0.934	0.924	0.652	2e-92

>gi|224129938|ref|XP_002320708.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa] gi|222861481|gb|EEE99023.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/272 (74%), Positives = 228/272 (83%), Gaps = 8/272 (2%)

Query: 9   ISF---FTLVFMFPLFL-HSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGA 64
           ISF   F L  +   FL +SC CF+PKL N++  +S SDWSPAGATWYGSPTGAGSDGGA
Sbjct: 4   ISFQNPFHLPIILAFFLVNSCHCFHPKLFNVSKIQSNSDWSPAGATWYGSPTGAGSDGGA 63

Query: 65  CGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT---HPECSGNPVTVVITDECP 121
           CGYG AVEQAPFS+ ISAGG S+YKSG+GCGACYQVKCT   +  CSGNPVTVVITD+CP
Sbjct: 64  CGYGNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVITDQCP 123

Query: 122 GGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGS 181
           G PC  ES HFDLSGTAFGAMAISGK DQLRN GVLQIQH+RV CN+PG  + FHVDSGS
Sbjct: 124 GSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGS 183

Query: 182 NPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRL 241
           NP YFAT++EYEDGDG+L SV+L+QALD SDSW+PMQ+SWGAVWKL+ GS LRAP S++L
Sbjct: 184 NPYYFATVVEYEDGDGELKSVELKQALD-SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKL 242

Query: 242 TAAESGKALVAKGVIPAGWQPGQTYRSLVNFT 273
           T+ ESGK +VA GVIPAGW PGQTYRSLVNF 
Sbjct: 243 TSLESGKTIVASGVIPAGWAPGQTYRSLVNFN 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541170|ref|XP_002511649.1| Beta-expansin 3 precursor, putative [Ricinus communis] gi|223548829|gb|EEF50318.1| Beta-expansin 3 precursor, putative [Ricinus communis]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/266 (74%), Positives = 224/266 (84%), Gaps = 6/266 (2%)

Query: 9   ISFFTLVFMFPLFLHSCWCFNPKLLNITMAESG-SDWSPAGATWYGSPTGAGSDGGACGY 67
           +S   LVF+F    +SC+CF  K  N++  +SG S W+PAGATWYGSPTGAGSDGGACGY
Sbjct: 11  VSVLALVFLF----NSCYCFKHKSFNVSRTQSGDSGWAPAGATWYGSPTGAGSDGGACGY 66

Query: 68  GAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCV 126
             AV+Q PFS++I+AGGPSLYKSGKGCGACYQVKCT H  CSG P TVVITDECPGGPC 
Sbjct: 67  QNAVDQPPFSSMIAAGGPSLYKSGKGCGACYQVKCTSHSACSGKPATVVITDECPGGPCT 126

Query: 127 SESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYF 186
           +ESVHFDLSGTAFGAMAISG ADQLRN GVLQI++RRV+CNYPG  + FHVDSGSNP YF
Sbjct: 127 AESVHFDLSGTAFGAMAISGGADQLRNAGVLQIRYRRVQCNYPGRSVVFHVDSGSNPYYF 186

Query: 187 ATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAES 246
           ATL+EYEDGDG+L SV+L+QALD  DSW PMQ+SWGAVW+LN GS LR P SLRLT+ ES
Sbjct: 187 ATLVEYEDGDGELRSVELKQALDKEDSWAPMQQSWGAVWRLNSGSVLRGPLSLRLTSLES 246

Query: 247 GKALVAKGVIPAGWQPGQTYRSLVNF 272
           GK +VA GVIPA WQPG+TYRS+VNF
Sbjct: 247 GKTIVASGVIPADWQPGKTYRSVVNF 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83778373|gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/267 (72%), Positives = 227/267 (85%), Gaps = 4/267 (1%)

Query: 8   PISFFTLVFMFPLFLHSCWCFNPKLLN-ITMAESGSDWSPAGATWYGSPTGAGSDGGACG 66
           P + FT   +F +   SC CF+PK LN ++  +S SDWSPAGATWYGSP+GAGSDGGACG
Sbjct: 10  PFTIFTYFTLFSILTISCSCFHPKRLNNVSKIQSNSDWSPAGATWYGSPSGAGSDGGACG 69

Query: 67  YGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPC 125
           Y  AV+Q PFS+LI+A GPSL+KSGKGCGACYQVKCT +  CSG PV VVITD CPGGPC
Sbjct: 70  YTNAVDQPPFSSLIAAAGPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPC 129

Query: 126 VSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNY 185
           +SES HFDLSGT+FGAMAISG+ADQLRN GVLQ+Q++RVECNYPG+++ FHVDSGSN NY
Sbjct: 130 LSESAHFDLSGTSFGAMAISGQADQLRNAGVLQVQYKRVECNYPGVKLTFHVDSGSNSNY 189

Query: 186 FATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAE 245
           FA L+EYEDGDGDL  VDL+QALD S+SW PMQ+SWGAVWKL+ GS+L APFSL+LT  E
Sbjct: 190 FAALVEYEDGDGDLNRVDLKQALD-SESWQPMQQSWGAVWKLDSGSSLVAPFSLKLT-GE 247

Query: 246 SGKALVAKGVIPAGWQPGQTYRSLVNF 272
           SG+ +VA GVIPAGWQPG+TYRS++NF
Sbjct: 248 SGQTVVANGVIPAGWQPGKTYRSVINF 274

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538529|ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicum] gi|82569705|gb|ABB83474.1| beta-expansin precursor [Solanum lycopersicum]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/266 (72%), Positives = 223/266 (83%), Gaps = 3/266 (1%)

Query: 8   PISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGY 67
           P   FT    F L   +C C +PK  N++  +S SDWSP GATWYGSP+GAGSDGGACGY
Sbjct: 10  PSIVFTYFTTFSLLTITCSCLHPKRFNVSKVQSNSDWSPPGATWYGSPSGAGSDGGACGY 69

Query: 68  GAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCV 126
             AV+Q PFS+LI+A GPSL+KSGKGCGACYQVKCT +  CSG PV VVITD CPGGPC+
Sbjct: 70  TNAVDQPPFSSLIAAAGPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCL 129

Query: 127 SESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYF 186
           SES HFDLSGT+FGAMAISG+ADQLRN GV+QIQ++RVECNYPG+++ FHVDSGSN NYF
Sbjct: 130 SESAHFDLSGTSFGAMAISGQADQLRNAGVIQIQYKRVECNYPGVKLTFHVDSGSNSNYF 189

Query: 187 ATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAES 246
           A L+EYEDGDGDL SVDL+QALD S+SW PMQ+SWGAVWKL+ GS+L APFSL+LT  ES
Sbjct: 190 AALVEYEDGDGDLNSVDLKQALD-SESWQPMQQSWGAVWKLDSGSSLVAPFSLKLT-GES 247

Query: 247 GKALVAKGVIPAGWQPGQTYRSLVNF 272
           G+ +VA GVIPAGWQPG+TYRS+VNF
Sbjct: 248 GQTVVANGVIPAGWQPGKTYRSVVNF 273

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453525|ref|XP_002278559.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734537|emb|CBI16588.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/248 (77%), Positives = 212/248 (85%), Gaps = 4/248 (1%)

Query: 27  CFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPS 86
           CF+ KLLN +  +S +DWSPAGATWYG   GAGSDGGACGY  AVE+APFSA +SAGGPS
Sbjct: 28  CFHLKLLNFSKLQSDTDWSPAGATWYGPANGAGSDGGACGYEDAVEKAPFSAKVSAGGPS 87

Query: 87  LYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAIS 145
           L+KSGKGCGACYQVKCT  E CSG+PVTV ITDECPG  CVSES HFDLSGTAFGAMA S
Sbjct: 88  LFKSGKGCGACYQVKCTGNEACSGSPVTVTITDECPG--CVSESTHFDLSGTAFGAMAKS 145

Query: 146 GKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQ 205
           G+ DQLRN GVLQIQ+RRVEC YPG  + FHVDSGSN NYFA+LIEYEDGDGDLA V LQ
Sbjct: 146 GQDDQLRNAGVLQIQYRRVECEYPGTSVVFHVDSGSNSNYFASLIEYEDGDGDLARVYLQ 205

Query: 206 QALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQT 265
           QALD SD W+PMQ+SWGAVWKL+YGS LRAPFS++LTA ESG  LVAK VIPAGWQPG+T
Sbjct: 206 QALD-SDMWVPMQQSWGAVWKLDYGSELRAPFSIKLTALESGNTLVAKNVIPAGWQPGKT 264

Query: 266 YRSLVNFT 273
           YRS+VNF 
Sbjct: 265 YRSVVNFN 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431962|ref|XP_004133769.1| PREDICTED: putative expansin-B2-like [Cucumis sativus] gi|449526511|ref|XP_004170257.1| PREDICTED: putative expansin-B2-like [Cucumis sativus]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/276 (65%), Positives = 215/276 (77%), Gaps = 7/276 (2%)

Query: 1   MAHVFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESG-SDWSPAGATWYGSPTGAG 59
           M H   +     +L    P F     CF+PK  N++  +S  SDWSPA ATWYG P GAG
Sbjct: 1   MTHFLFFAALIISLSLAPPSF-----CFHPKSFNVSKYQSDDSDWSPAVATWYGPPDGAG 55

Query: 60  SDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITD 118
           SDGG+CGYG AVEQ PFS+ I+AGGPSLYK G+ CGACYQVKC+    CSGNPVTVVITD
Sbjct: 56  SDGGSCGYGKAVEQPPFSSFIAAGGPSLYKYGQACGACYQVKCSGEGACSGNPVTVVITD 115

Query: 119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVD 178
            CPGG C S+SVHFDLSGTAFGAMA +G+A++LR++GVL IQH+RVECNYPG  I F VD
Sbjct: 116 SCPGGSCASDSVHFDLSGTAFGAMAATGRAEELRSLGVLHIQHKRVECNYPGTSINFIVD 175

Query: 179 SGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFS 238
           SGSN NYFA LIEYEDGDG+L SV+L+Q    S+SW+PM++SWGAVWKL+ GS L+APFS
Sbjct: 176 SGSNSNYFAALIEYEDGDGELGSVELKQGAVDSNSWIPMKQSWGAVWKLDSGSALQAPFS 235

Query: 239 LRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNFTP 274
           LRLTA +SGK +VA  VIPAGWQ G++YRS+VNF P
Sbjct: 236 LRLTALDSGKTVVANNVIPAGWQAGKSYRSVVNFDP 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453519|ref|XP_002275557.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734541|emb|CBI16592.3| unnamed protein product [Vitis vinifera]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 194/250 (77%), Positives = 215/250 (86%), Gaps = 4/250 (1%)

Query: 25  CWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGG 84
           C C + K LN++  +S +DWSPAGATWYG   GAGSDGGACGYG AVE+APFSA +SAGG
Sbjct: 26  CSCSHRKHLNVSKLQSDTDWSPAGATWYGPAAGAGSDGGACGYGDAVEKAPFSAKVSAGG 85

Query: 85  PSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMA 143
           PSL+KSGKGCGACYQVKCT  E CSG+PVTV ITDECPG  CVSES HFDLSGTAFGAMA
Sbjct: 86  PSLFKSGKGCGACYQVKCTGNEACSGSPVTVTITDECPG--CVSESTHFDLSGTAFGAMA 143

Query: 144 ISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVD 203
             G+ADQLRN G+LQIQ+RRVEC YPG  +AFHVDSGSNPNYFA+LIEYEDGDG+LA VD
Sbjct: 144 TPGQADQLRNAGILQIQYRRVECEYPGASVAFHVDSGSNPNYFASLIEYEDGDGELAGVD 203

Query: 204 LQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPG 263
           LQQAL  S+SW+PMQ+SWGAVWKL+ GS LRAPFS+RLTA ESG  LVAK VIPAGWQPG
Sbjct: 204 LQQALH-SNSWVPMQQSWGAVWKLDSGSGLRAPFSIRLTALESGNTLVAKNVIPAGWQPG 262

Query: 264 QTYRSLVNFT 273
           +TYRSLVNF 
Sbjct: 263 KTYRSLVNFN 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70779677|gb|AAZ08315.1| putative beta-expansin [Eucalyptus globulus]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/209 (77%), Positives = 189/209 (90%), Gaps = 2/209 (0%)

Query: 65  CGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGG 123
           CGYG+ V QAPFS+++SAGGPSL+KSGKGCGACYQVKCT +  CSGNPVTVVITDECPGG
Sbjct: 1   CGYGSGVAQAPFSSMVSAGGPSLFKSGKGCGACYQVKCTENAACSGNPVTVVITDECPGG 60

Query: 124 PCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNP 183
           PCV+ES HFDLSGTAFGAMA SGKAD+LRN GVLQIQ+++V+CN+PG ++AFHVDSGSNP
Sbjct: 61  PCVAESAHFDLSGTAFGAMASSGKADELRNAGVLQIQYQKVKCNFPGAKVAFHVDSGSNP 120

Query: 184 NYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTA 243
           NYFA LIEYEDGDG+L +V+L+QALD SDSWLPMQ+SWGAVWKL+    LRAPFS++LT+
Sbjct: 121 NYFAALIEYEDGDGELGAVNLKQALD-SDSWLPMQQSWGAVWKLDGAGQLRAPFSIKLTS 179

Query: 244 AESGKALVAKGVIPAGWQPGQTYRSLVNF 272
            +SGK LVA  VIPAGWQPGQTYRS+VNF
Sbjct: 180 LDSGKTLVANNVIPAGWQPGQTYRSVVNF 208

Source: Eucalyptus globulus

Species: Eucalyptus globulus

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726379|ref|NP_001238660.1| cytokinin induced message [Glycine max] gi|555616|gb|AAA50175.1| cytokinin induced message [Glycine max]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/278 (64%), Positives = 211/278 (75%), Gaps = 9/278 (3%)

Query: 1   MAHVFRYPIS-FFTLVFMFPLFL-HSCWCFNPK-LLNITM-AESGSDWSPAGATWYGSPT 56
           MA   +  +S   TL+ +  +FL    +CFNPK L N +  + S SDWSPA ATWYG   
Sbjct: 1   MALTLQRALSELLTLIAILSIFLVIPSFCFNPKKLYNASYYSPSSSDWSPAVATWYGPAN 60

Query: 57  GAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVV 115
           G GS+GGACGYG AV Q PFS+LISAG P +Y SGKGCG+CY+VKCT +  CSGNPV VV
Sbjct: 61  GDGSEGGACGYGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVV 120

Query: 116 ITDECPGGPCVSES-VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIA 174
           ITDEC G  C S++  HFDLSG AFGAMAISG+ + LRN G + IQHRR+ECNYPG  IA
Sbjct: 121 ITDECAG--CGSDAQYHFDLSGNAFGAMAISGQDENLRNAGKINIQHRRIECNYPGRSIA 178

Query: 175 FHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLR 234
           FHVDSGSN  YFATL+EYEDGDGDLA V+L++ALDS  SW  MQ+SWGAVWK + GS LR
Sbjct: 179 FHVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSG-SWDSMQQSWGAVWKFDKGSPLR 237

Query: 235 APFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           APFS++LT  ESG+ +VA  VIPAGW PGQTYRS+VNF
Sbjct: 238 APFSIKLTTLESGQTIVANNVIPAGWTPGQTYRSIVNF 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248036|ref|NP_001239797.1| putative expansin-B2-like [Glycine max] gi|255648356|gb|ACU24629.1| unknown [Glycine max] gi|381342536|gb|AFG23321.1| expansin B protein [Glycine max]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/268 (65%), Positives = 208/268 (77%), Gaps = 12/268 (4%)

Query: 9   ISFFTLVFMFPLFLHSCWCFNPKLL-NITM-AESGSDWSPAGATWYGSPTGAGSDGGACG 66
           ++  ++  + P F     CFNPK+L N +    SGSDWSP+ ATWYG   G GS+GGACG
Sbjct: 16  VAILSIFLVIPSF-----CFNPKMLYNASYYPPSGSDWSPSVATWYGPANGDGSEGGACG 70

Query: 67  YGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPC 125
           YG AV Q PFS+LISAG P +Y SGKGCG+CY+VKCT +  CSGNPV VVITDEC G  C
Sbjct: 71  YGNAVGQPPFSSLISAGSPLIYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAG--C 128

Query: 126 VSES-VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPN 184
            S++  HFDLSG+AFGAMA+SG+ + LRN G + IQHRR+ECNYPG  IAFHVDSGSN  
Sbjct: 129 GSDAQYHFDLSGSAFGAMAVSGQDENLRNAGKINIQHRRIECNYPGRSIAFHVDSGSNQE 188

Query: 185 YFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAA 244
           YFATL+EYEDGDGDLA V+L++ALDS  SW  MQ+SWGAVWK++ GS LRAPFS++LT  
Sbjct: 189 YFATLVEYEDGDGDLAKVELKEALDSG-SWDSMQQSWGAVWKIDKGSPLRAPFSIKLTTL 247

Query: 245 ESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           ESGK +VA  VIPAGW PGQTYRS+VNF
Sbjct: 248 ESGKTIVANNVIPAGWTPGQTYRSIVNF 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2018521	273	EXPB2 "expansin B2" [Arabidops	0.970	0.974	0.605	2.2e-82
TAIR|locus:2055594	259	EXPB4 "expansin B4" [Arabidops	0.919	0.972	0.501	6.3e-69
TAIR|locus:4515102723	223	EXPB6 "AT1G65681" [Arabidopsis	0.726	0.892	0.541	7.3e-59
TAIR|locus:2123643	264	EXPB3 "expansin B3" [Arabidops	0.941	0.977	0.420	1.3e-54
TAIR|locus:2051338	271	EXPB1 "expansin B1" [Arabidops	0.963	0.974	0.411	3.5e-52
TAIR|locus:2121803	265	EXLA2 "expansin-like A2" [Arab	0.697	0.720	0.351	7.3e-27
TAIR|locus:2077177	265	EXLA1 "expansin-like A1" [Arab	0.700	0.724	0.356	1.9e-26
TAIR|locus:2077167	263	EXLA3 "expansin-like A3" [Arab	0.697	0.726	0.341	3.2e-26
TAIR|locus:2130444	250	EXLB1 "expansin-like B1" [Arab	0.806	0.884	0.323	8.7e-24
TAIR|locus:2015539	257	EXPA18 "expansin A18" [Arabido	0.821	0.875	0.294	1.6e-22

TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
 Identities = 164/271 (60%), Positives = 192/271 (70%)

Query:     4 VFRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAE-SGSDWSPAGATWYGSPTXXXXXX 62
             V RY +    L  +  L L+   CF+PK  NI+ A  S SDWS AG+TWYG+PT      
Sbjct:     6 VDRYYMLMNLLFALTCLLLNLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDG 65

Query:    63 XXXXXXXXVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECP 121
                     V Q PFS ++SAGGPSL+KSGKGCGACYQVKCT    CS NPVTVVITDECP
Sbjct:    66 GACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECP 125

Query:   122 GGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGS 181
             G  CV ESVHFDLSGTAFGAMAISG+  QLRNVG LQI +++VECNY G  + F VD GS
Sbjct:   126 G--CVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGS 183

Query:   182 NPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRL 241
             N N FA L+ Y +GDG++  ++L+QALDS D WL M +SWGAVWKL+  S LRAP SLR+
Sbjct:   184 NANSFAVLVAYVNGDGEIGRIELKQALDS-DKWLSMSQSWGAVWKLDVSSPLRAPLSLRV 242

Query:   242 TAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
             T+ ESGK +VA  VIPA WQPG  Y+S VNF
Sbjct:   243 TSLESGKTVVASNVIPANWQPGAIYKSNVNF 273

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 132/263 (50%), Positives = 175/263 (66%)

Query:    11 FFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTXXXXXXXXXXXXXX 70
             +F L+ +F + L  C+C N     I +A SG+    AG TWYG P               
Sbjct:     7 YFALLALFAVSLKFCYCQNE---TIDVAGSGT----AGVTWYGEPFGAGSTGGACGYGSA 59

Query:    71 VEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCVSES 129
             V   P  A++SAGGPSL+ +GKGCG CYQV C  HP CSG+P+TV ITDECPGGPC SE 
Sbjct:    60 VANPPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEP 119

Query:   130 VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATL 189
             VH DLSG A GA+A  G+ADQLR+ GV+++ ++R  C Y G  I F +D+G+NP Y + +
Sbjct:   120 VHIDLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFV 179

Query:   190 IEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKA 249
             +EYE+GDGDL++V++Q A     S++ MQ    AVWK+N GS LR PF++RLT+ ES K 
Sbjct:   180 VEYENGDGDLSNVEIQPA---GGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKV 236

Query:   250 LVAKGVIPAGWQPGQTYRSLVNF 272
             +VA  VIPA W+P ++YRS+VNF
Sbjct:   237 IVAYNVIPANWKPDESYRSIVNF 259

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 110/203 (54%), Positives = 146/203 (71%)

Query:    71 VEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITDECPGGPCVSES 129
             V   P   ++SAGGPS++ +G GCG C+Q+ C  HP CS  P+TV ITDECPGGPC SE 
Sbjct:    23 VANPPLYGMVSAGGPSVFNNGIGCGTCFQILCNGHPACSRRPITVTITDECPGGPCASEP 82

Query:   130 VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATL 189
              HFDLSG A GA+A  G+ D+LR+ GVL++ +RRVEC Y    IAF +D G+NP Y + +
Sbjct:    83 AHFDLSGKAMGALARPGQGDRLRSAGVLRVYYRRVECLYRRTNIAFRMDPGANPYYISFV 142

Query:   190 IEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKA 249
             +EYE+GDGDLA +++Q A D    ++PMQ    AVWK++ GS L  PF++RLT+AES K 
Sbjct:   143 VEYENGDGDLAYIEIQPA-DGE--FIPMQEMRSAVWKISSGSPLTGPFNIRLTSAESHKV 199

Query:   250 LVAKGVIPAGWQPGQTYRSLVNF 272
             ++A  VIPA W+P +TYRS+VNF
Sbjct:   200 VLAYNVIPANWKPNETYRSVVNF 222

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 113/269 (42%), Positives = 153/269 (56%)

Query:     7 YPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTXXXXXXXXXX 66
             +P+   TL  +  L + S       L       S S W PA ATWYGSP           
Sbjct:     4 FPVMLATLCIVLQLLIGSS-----ALATTNRHVSNSHWLPAVATWYGSPNGDGSDGGACG 58

Query:    67 XXXXVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPC 125
                 V+  P  A + A  P L+K+G+GCGACY+V+C     CS   VTV+ITDECPG  C
Sbjct:    59 YGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCLDKSICSRRAVTVIITDECPG--C 116

Query:   126 VSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNY 185
                S HFDLSG  FG +AI+G++  LRN G++ + +RR  C Y G  IAFHV+ GS   +
Sbjct:   117 SKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFW 176

Query:   186 FATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAE 245
              + L+E+EDG+GD+ S+ ++QA   +  WL M+  WGA W +  G  L+ PFS++LT   
Sbjct:   177 LSLLVEFEDGEGDIGSMHIRQA--GAREWLEMKHVWGANWCI-IGGPLKGPFSIKLTTLS 233

Query:   246 SGKALVAKGVIPAGWQPGQTYRSLVNFTP 274
             +GK L A  V+P  W P  TY S +NF+P
Sbjct:   234 AGKTLSATDVVPRNWAPKATYSSRLNFSP 262

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 111/270 (41%), Positives = 150/270 (55%)

Query:     7 YPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTXXXXXXXXXX 66
             +P+   TL     L +       P L +     + + W PA ATWYGS            
Sbjct:     4 FPVILPTLCVFLHLLISGSGS-TPPLTHSNQQVAATRWLPATATWYGSAEGDGSSGGACG 62

Query:    67 XXXXVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPC 125
                 V+  PF A + A  P L+K G+GCGACY+V+C     CS   VT++ TD+ P GP 
Sbjct:    63 YGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPS 122

Query:   126 V-SESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPN 184
               ++  HFDLSG AFG MAI G    +RN G+L I +RR  C Y G  IAFHV++GS   
Sbjct:   123 AKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDY 182

Query:   185 YFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAA 244
             + + LIEYEDG+GD+ S+ ++QA   S  W+ M+  WGA W +  G  L+ PFS++LT  
Sbjct:   183 WLSLLIEYEDGEGDIGSMHIRQA--GSKEWISMKHIWGANWCIVEGP-LKGPFSVKLTTL 239

Query:   245 ESGKALVAKGVIPAGWQPGQTYRSLVNFTP 274
              + K L A  VIP+ W P  TY S +NF+P
Sbjct:   240 SNNKTLSATDVIPSNWVPKATYTSRLNFSP 269

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 71/202 (35%), Positives = 106/202 (52%)

Query:    76 FSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDL 134
             F+  I+A  PS+YK G GCGAC+QV+C +P  CS    TV++TD        +      L
Sbjct:    55 FAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK-----TNQTDLVL 109

Query:   135 SGTAFGAMA--ISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGS-NPNYFATLIE 191
             S  AF AMA  + G    L   G++ I++RRV C+Y   ++   V+  S NPNY A  + 
Sbjct:   110 SSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLL 169

Query:   192 YEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV 251
             Y+ G  ++ ++ + Q    S  W  M RS GAVW  +        F   +TA   GK + 
Sbjct:   170 YQGGQTEVVAIYIAQV--GSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVW 227

Query:   252 AKGVIPAGWQPGQTYRSLVNFT 273
             ++ V+PA W+ G++Y + V  T
Sbjct:   228 SQRVLPANWEAGKSYDAGVQIT 249

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 72/202 (35%), Positives = 106/202 (52%)

Query:    76 FSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDL 134
             F+  I+A  PS+YK G GCGAC+QV+C +P+ CS     V+ITD        S      L
Sbjct:    54 FAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK-----SNQTDLVL 108

Query:   135 SGTAFGAMA--ISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN-PNYFATLIE 191
             S  AF AMA  I G    L   G++ I+++RV C+Y    +   V+  S  PNY    + 
Sbjct:   109 SSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLL 168

Query:   192 YEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV 251
             Y+ G  ++ S+D+ Q + SS +W  M RS GAVW  +   T    F   +T    GK + 
Sbjct:   169 YQGGQTEVVSIDIAQ-VGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIW 227

Query:   252 AKGVIPAGWQPGQTYRSLVNFT 273
             ++ V+P+ W+ G+ Y + V  T
Sbjct:   228 SQSVLPSNWEAGKIYDAGVQIT 249

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 69/202 (34%), Positives = 101/202 (50%)

Query:    76 FSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDL 134
             F+  I+A  PS+YK G GCGAC+QV+C +P+ C+     V++TD        S      L
Sbjct:    54 FAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLN-----TSNQTDLVL 108

Query:   135 SGTAFGAMA--ISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN-PNYFATLIE 191
             S  AF AMA  + G    L   G++ ++++RV CNY    +   V+  S  PNY A  + 
Sbjct:   109 SSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLL 168

Query:   192 YEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV 251
             Y+ G  ++  +D+      S  W  M RS GAVW  +   T    F   +T    GK + 
Sbjct:   169 YQGGQTEVVGIDIAPV--GSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVW 226

Query:   252 AKGVIPAGWQPGQTYRSLVNFT 273
             +K V+PA W  G+ Y + V  T
Sbjct:   227 SKRVLPANWNSGRIYDAGVQIT 248

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 76/235 (32%), Positives = 112/235 (47%)

Query:    43 DWSPAGATWYGSPTXXXXXXXXXXXXXXVEQAPFSALISAGGPSLYKSGKGCGACYQVKC 102
             D+  + AT+YGSP                     +  +S     L+ +G GCGACYQV+C
Sbjct:    26 DFVNSRATYYGSPDCKANPRGHCGYGEFGRDIN-NGEVSGVSWRLWNNGTGCGACYQVRC 84

Query:   103 T-HPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQH 161
                P CS   V VV TD   G     +   F LS  A+G MA  G  +QL + GV+ +++
Sbjct:    85 KIPPHCSEEGVYVVATDSGEG-----DGTDFILSPKAYGRMARPGTENQLYSFGVVNVEY 139

Query:   162 RRVECNYPGMRIAFHVDSGS-NPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRS 220
             +R+ C Y G  + + +   S NP+Y A L+ Y  G  D+ +V++ Q  +    W  M+R 
Sbjct:   140 QRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQ--EDCKEWRRMRRV 197

Query:   221 WGAVWKLNYGSTLRAPFSLR-LTAAESG-KALVAKGVIPAGWQPGQTYRSLVNFT 273
             +GAV  L   +  R   +LR L    +G   + +   IPA W  G TY S +  T
Sbjct:   198 FGAVHDLQ--NPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNILLT 250

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS

GO:0009828 "plant-type cell wall loosening" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 75/255 (29%), Positives = 117/255 (45%)

Query:    32 LLNITMAE-SGSDWSPAGATWYGSPTXXXXXXXXXXXXXXVEQAPFSALISAGGPSLYKS 90
             ++  +MA  +G+ W  A AT+YG  T               +   +    +A   +L+  
Sbjct:    18 MIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSG-YGVATTALSTALFNE 76

Query:    91 GKGCGACYQVKC-THPECS-GNPVTVVI-TDECP---------GGPCVSESVHFDLSGTA 138
             G  CG C+Q+KC + P C  G+P TVV  T+ CP         GG C    VHFDL+  A
Sbjct:    77 GYACGQCFQLKCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPA 136

Query:   139 FGAMAISGKADQLRNVGVLQIQHRRVECN-YPGMRIAFHVDSGSNPNYFATLIEYEDGDG 197
             F  +A + KA      G++ + +RRV C    G+R  F      N  +    +    G G
Sbjct:   137 FMKIA-NWKA------GIIPVSYRRVACKKIGGIRFKFE----GNGYWLLVYVMNVGGPG 185

Query:   198 DLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIP 257
             D+ ++ ++    S   W+ M  +WGA ++  + S      S RLT+  + + + A    P
Sbjct:   186 DIKTMAVK---GSRTGWINMSHNWGASYQA-FSSLYGQSLSFRLTSYTTRQTIYAYNAAP 241

Query:   258 AGWQPGQTYRSLVNF 272
             A W  G+TY+S  NF
Sbjct:   242 ASWSAGKTYQSKANF 256

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHY6	EXPB2_ARATH	No assigned EC number	0.6854	0.8868	0.8901	yes	no
Q7XT40	EXB15_ORYSJ	No assigned EC number	0.6080	0.9598	0.9962	yes	no
Q5W6Z9	EXB18_ORYSJ	No assigned EC number	0.5970	0.9598	0.9962	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrEXPB1 hypothetical protein (274 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	2e-43
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	3e-34
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	8e-28
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	9e-22
pfam03330	77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	2e-20
PLN03024	125	PLN03024, PLN03024, Putative EG45-like domain cont	6e-08
smart00837	87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	2e-07

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score =  147 bits (373), Expect = 2e-43
 Identities = 84/276 (30%), Positives = 131/276 (47%), Gaps = 38/276 (13%)

Query: 5   FRYPISFFTLVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGA 64
             +   F  ++ + PL   S                  D++ + AT+YGSP   G+  GA
Sbjct: 3   LSHYCCFLCVIVLLPLLCKS-----------------QDFTYSRATYYGSPDCLGTPTGA 45

Query: 65  CG---YGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPE-CSGNPVTVVITDEC 120
           CG   YG  V     + +       LY++G GCGACYQV+C  P  CS + V VV+TD  
Sbjct: 46  CGFGEYGRTVNGGNVAGV-----SRLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYG 100

Query: 121 PGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSG 180
            G     +   F LS  A+  +A    A +L   GV+ +++RR+ C Y G  + F V   
Sbjct: 101 EG-----DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEH 155

Query: 181 S-NPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSL 239
           S  P+Y A ++ Y+ G  D+ +V++ Q  +    W  M++++GAVW +      + P +L
Sbjct: 156 SRFPDYLAIVMLYQAGQNDILAVEIWQ--EDCKEWRGMRKAYGAVWDMPNPP--KGPITL 211

Query: 240 RLTAAESG--KALVAKGVIPAGWQPGQTYRSLVNFT 273
           R   + S     + AK VIP+ W+ G  Y S +   
Sbjct: 212 RFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247

Length = 247

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score =  118 bits (299), Expect = 3e-34
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 3/85 (3%)

Query: 173 IAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGST 232
           + F V+ GSNP + A L+E   GDGD+ +V++++A   S  W+PM R+WGA W+ +    
Sbjct: 1   VRFTVNGGSNPYFLAVLVENVGGDGDIVAVEIKEAG--SGEWIPMSRNWGANWQSD-SVL 57

Query: 233 LRAPFSLRLTAAESGKALVAKGVIP 257
           L  P S R+T+++SGK LVA  VIP
Sbjct: 58  LGGPLSFRVTSSDSGKTLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score =  107 bits (267), Expect = 8e-28
 Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 27/237 (11%)

Query: 41  GSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQV 100
           GS W+ A AT+YG    +G+ GGACGYG    Q  +    +A   +L+ +G  CGAC+++
Sbjct: 22  GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQG-YGTNTAALSTALFNNGLSCGACFEI 80

Query: 101 KCTHPE--CSGNPVTVVITDECP---------GGPCVSESVHFDLSGTAFGAMAISGKAD 149
           KC +    C    + +  T+ CP         GG C     HFDLS   F  +A      
Sbjct: 81  KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA------ 134

Query: 150 QLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALD 209
           Q +  G++ +Q+RRV C   G  I F ++  S  N    LI    G GD+ +V ++    
Sbjct: 135 QYK-AGIVPVQYRRVACRKSG-GIRFTINGHSYFNL--VLITNVGGAGDIVAVSIK---G 187

Query: 210 SSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTY 266
           S  +W  M R+WG  W+ N     +A  S ++T ++ G+ +++    P+ W  GQTY
Sbjct: 188 SKSNWQAMSRNWGQNWQSNSYLNGQA-LSFKVTTSD-GRTVISNNAAPSNWAFGQTY 242

Length = 247

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score = 91.1 bits (226), Expect = 9e-22
 Identities = 80/277 (28%), Positives = 123/277 (44%), Gaps = 42/277 (15%)

Query: 14  LVFMFPLFLHSCWCFNPKLLNITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQ 73
            +    + L  C C+   L     A + S W+ A AT+YG    +G+ GGACGYG  +  
Sbjct: 4   SLLGLAILLQFC-CY---LFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYG-NLYS 58

Query: 74  APFSALISAGGPSLYKSGKGCGACYQVKCTHPE-----CSGNPVTVVITDECP------- 121
             +    +A   +L+  G  CG CY++ C +         G  VT+  T+ CP       
Sbjct: 59  TGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPN 118

Query: 122 --GGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDS 179
             GG C     HFD++  A+  + I          G++ +  +RV C   G  + F ++ 
Sbjct: 119 NNGGWCNPPLQHFDMAQPAWEKIGIY-------RGGIVPVLFQRVPCKKHG-GVRFTING 170

Query: 180 GSNPNYFA-TLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNY---GSTLRA 235
               +YF   LI    G G + SV ++    S   W+ M R+WGA W+ N    G +L  
Sbjct: 171 ---RDYFELVLISNVGGAGSIQSVSIK---GSKTGWMAMSRNWGANWQSNAYLDGQSL-- 222

Query: 236 PFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
             S ++T  + G+      V+PA W  GQT+ S V F
Sbjct: 223 --SFKVTTTD-GQTRFFLNVVPANWGFGQTFSSSVQF 256

Length = 256

>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 82.6 bits (205), Expect = 2e-20
 Identities = 35/87 (40%), Positives = 41/87 (47%), Gaps = 17/87 (19%)

Query: 80  ISAGGPSLYKSGKGCGACYQVKCT-----HPECS-GNPVTVVITDECPGGPCVSESVHFD 133
            +AG  SLY  G  CG CYQVKC         C     VTV ITD CP  P      HFD
Sbjct: 1   TAAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRCPFPP----RRHFD 56

Query: 134 LSGTAFGAMAISGKADQLRNVGVLQIQ 160
           LSG AF A+A           G++ ++
Sbjct: 57  LSGPAFEALAKPRA-------GIVPVE 76

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77

>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 20/105 (19%)

Query: 45  SPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTH 104
           +P  AT+Y S T +    G            F  +I+A   SL+ +G+ CG  + VKC  
Sbjct: 22  TPGIATFYTSYTPSACYRGT----------SFGVMIAAASDSLWNNGRVCGKMFTVKCKG 71

Query: 105 PE------CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMA 143
           P       C+G  VTV I D CP G C S     DLS  AF  +A
Sbjct: 72  PRNAVPHPCTGKSVTVKIVDHCPSG-CAST---LDLSREAFAQIA 112

Length = 125

>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 85  PSLYKSGKGCGACYQVKCTHPE--C-SGNPVTVVITDECP---------GGPCVSESVHF 132
            +L+ +G  CGACY++ C      C  G  +TV  T+ CP         GG C     HF
Sbjct: 6   TALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHF 65

Query: 133 DLSGTAFGAMAI 144
           DLS  AF  +A 
Sbjct: 66  DLSQPAFEKIAQ 77

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
PLN00193	256	expansin-A; Provisional	100.0
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.96
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.93
PLN00115	118	pollen allergen group 3; Provisional	99.91
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.89
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.85
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.74
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	99.15
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.55
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	97.48
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.26
PRK10672	361	rare lipoprotein A; Provisional	96.63
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	93.1

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=3.6e-62  Score=439.92  Aligned_cols=223  Identities=35%  Similarity=0.714  Sum_probs=203.7

Q ss_pred             CCCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-CCCCCCCCEEEEEee
Q 023962           40 SGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECSGNPVTVVITD  118 (274)
Q Consensus        40 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~~~c~~~sv~V~V~D  118 (274)
                      ..++|.+++|||||++++.|+++|||||++ ...+.++..+||++ ++|++|++||+||||+|. +..|.+++|+|+|||
T Consensus        21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd   98 (247)
T PLN03023         21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD   98 (247)
T ss_pred             hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence            556799999999999999899999999999 66667888999998 999999999999999998 678999999999999


Q ss_pred             cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCC-CceEEEEEEEecCCC
Q 023962          119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN-PNYFATLIEYEDGDG  197 (274)
Q Consensus       119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs-~~w~av~v~n~~~~~  197 (274)
                      .||.  +   +.|||||.+||.+||.++++++|+..|+++|+||||||.++|.+|+|+|+++|+ ++|++|+|.|+++++
T Consensus        99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G  173 (247)
T PLN03023         99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN  173 (247)
T ss_pred             CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence            9985  4   489999999999999999999999999999999999999998789999999996 999999999999999


Q ss_pred             CeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEc-cCCeE-EEEccccCCCCCCCcEEeCCCCCC
Q 023962          198 DLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAA-ESGKA-LVAKGVIPAGWQPGQTYRSLVNFT  273 (274)
Q Consensus       198 ~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~-~~G~~-vv~~~vip~~~~~G~~y~t~~QF~  273 (274)
                      +|++||||+++  +..|++|+|+||++|+++.  ++++||+||++.. .+|++ |+++||||++|++|++|++++||.
T Consensus       174 dI~~V~Ik~~~--~~~W~~M~rnwGa~W~~~~--~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~  247 (247)
T PLN03023        174 DILAVEIWQED--CKEWRGMRKAYGAVWDMPN--PPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD  247 (247)
T ss_pred             cEEEEEEEecC--CCCceECccCCcceeEcCC--CCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence            99999999976  5789999999999999976  6889887777541 36654 889999999999999999999995

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=4.9e-61  Score=432.89  Aligned_cols=220  Identities=33%  Similarity=0.715  Sum_probs=201.1

Q ss_pred             ccccccCCCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc--CCCCCCCC
Q 023962           34 NITMAESGSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT--HPECSGNP  111 (274)
Q Consensus        34 ~~~~~~~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~--~~~c~~~s  111 (274)
                      +|+ +.+.++|..++|||||++++.++++|||||++ +..++++.++||+|+.+|++|+.||+||||+|.  +..|.+++
T Consensus        16 ~~~-~~~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gs   93 (247)
T PLN00050         16 KIV-EGYGSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGS   93 (247)
T ss_pred             eec-cccCCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCc
Confidence            554 45677999999999999998888999999999 566788999999999999999999999999996  35798889


Q ss_pred             EEEEEeecCCC---------CCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCC
Q 023962          112 VTVVITDECPG---------GPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSN  182 (274)
Q Consensus       112 v~V~V~D~Cp~---------~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs  182 (274)
                      |+|+|||+||+         +||.+++.|||||.+||.+|+.       ...|+++|+||+|||+++| ||+|+++++  
T Consensus        94 V~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~--  163 (247)
T PLN00050         94 IIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH--  163 (247)
T ss_pred             EEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC--
Confidence            99999999996         3898889999999999999998       6889999999999999998 999999864  


Q ss_pred             CceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCC-CeEEEEEEccCCeEEEEccccCCCCC
Q 023962          183 PNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRA-PFSLRLTAAESGKALVAKGVIPAGWQ  261 (274)
Q Consensus       183 ~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~lRiT~~~~G~~vv~~~vip~~~~  261 (274)
                      +||++++|.|+++.++|++|+|++++   ..|++|+|+||++|+++..  +.+ ||+||||+ .+|+++++.||||++|+
T Consensus       164 sy~~~vlv~nv~G~gdi~~V~ikg~~---~~W~~M~R~wGa~W~~~~~--l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~  237 (247)
T PLN00050        164 SYFNLVLITNVGGAGDIVAVSIKGSK---SNWQAMSRNWGQNWQSNSY--LNGQALSFKVTT-SDGRTVISNNAAPSNWA  237 (247)
T ss_pred             ceeEEEEEEEcCCCccEEEEEEecCC---CCeeECccccCceeEccCC--CCCCcEEEEEEe-cCCcEEEECceeCCCCC
Confidence            49999999999999999999999975   5899999999999999873  555 99999999 99999999999999999


Q ss_pred             CCcEEeCCCCC
Q 023962          262 PGQTYRSLVNF  272 (274)
Q Consensus       262 ~G~~y~t~~QF  272 (274)
                      +|++|++. ||
T Consensus       238 ~G~ty~~~-~f  247 (247)
T PLN00050        238 FGQTYTGM-QF  247 (247)
T ss_pred             CCCeEecC-cC
Confidence            99999995 98

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=8.3e-61  Score=433.01  Aligned_cols=215  Identities=33%  Similarity=0.694  Sum_probs=197.6

Q ss_pred             CCCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc----CCCCCC-CCEEEE
Q 023962           41 GSDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT----HPECSG-NPVTVV  115 (274)
Q Consensus        41 ~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~----~~~c~~-~sv~V~  115 (274)
                      .++|.+++|||||++++.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|.    ++.|.+ ++|+|+
T Consensus        27 ~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt  105 (256)
T PLN00193         27 PSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTIT  105 (256)
T ss_pred             CCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEE
Confidence            34899999999999988888999999998 556788999999999999999999999999994    457854 599999


Q ss_pred             EeecCCC---------CCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceE
Q 023962          116 ITDECPG---------GPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYF  186 (274)
Q Consensus       116 V~D~Cp~---------~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~  186 (274)
                      |||+||+         .||.+++.|||||.+||.+|+.       ...|+++|+||+|+|+++| ||+|+++  +++||+
T Consensus       106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~~  175 (256)
T PLN00193        106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYFE  175 (256)
T ss_pred             EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccEE
Confidence            9999996         2798888999999999999997       5899999999999999998 9999998  389999


Q ss_pred             EEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCC-CeEEEEEEccCCeEEEEccccCCCCCCCcE
Q 023962          187 ATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRA-PFSLRLTAAESGKALVAKGVIPAGWQPGQT  265 (274)
Q Consensus       187 av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~lRiT~~~~G~~vv~~~vip~~~~~G~~  265 (274)
                      +|+|.|++++++|++|+||+++   ..|++|+|+||++|+++.  .+.+ ||+||||+ .+|+++++.||||++|++|++
T Consensus       176 ~vlv~nv~G~gdV~~v~Ik~~~---~~W~~M~R~wGa~W~~~~--~l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~t  249 (256)
T PLN00193        176 LVLISNVGGAGSIQSVSIKGSK---TGWMAMSRNWGANWQSNA--YLDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQT  249 (256)
T ss_pred             EEEEEEeCCCccEEEEEEecCC---CCeeECcccccceeEecC--CCCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCe
Confidence            9999999999999999999975   589999999999999987  3565 99999999 999999999999999999999


Q ss_pred             EeCCCCC
Q 023962          266 YRSLVNF  272 (274)
Q Consensus       266 y~t~~QF  272 (274)
                      |++.+||
T Consensus       250 y~s~vqf  256 (256)
T PLN00193        250 FSSSVQF  256 (256)
T ss_pred             EecCccC
Confidence            9999998

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.8e-28  Score=208.45  Aligned_cols=197  Identities=23%  Similarity=0.286  Sum_probs=164.2

Q ss_pred             CeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCC----CCCCCcEEEEEEcCCCCCCCCEEEEEee
Q 023962           43 DWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKS----GKGCGACYQVKCTHPECSGNPVTVVITD  118 (274)
Q Consensus        43 ~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~----g~~CG~C~eV~c~~~~c~~~sv~V~V~D  118 (274)
                      +-++|.|||-+...    .+||-..    ++.+.+..|.|+|..+-+-    .+.-|+.+||.+     +++.++|.|+|
T Consensus        29 ~~f~G~ATyTgsGY----sGGAflL----DPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----PKG~TTVYVTD   95 (232)
T COG4305          29 DLFEGYATYTGSGY----SGGAFLL----DPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----PKGKTTVYVTD   95 (232)
T ss_pred             cccceeEEEecccc----cCceEEe----cCcCCcceeeecCHHHcccCCchhhhccceEEEEC-----CCCceEEEEec
Confidence            34699999987753    3677633    4556788999999987764    378999999998     89999999999


Q ss_pred             cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceEEEEEEEecCCCC
Q 023962          119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGD  198 (274)
Q Consensus       119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~av~v~n~~~~~~  198 (274)
                      .-|+  -.  .+.||||+.||.+|.+       +.+|+++|+||.|+-|..| |+.+++|+||+.||.+|||+||..  |
T Consensus        96 lYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~y--P  161 (232)
T COG4305          96 LYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHKY--P  161 (232)
T ss_pred             cccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeecccC--c
Confidence            9998  33  5899999999999998       7999999999999999999 999999999999999999999975  9


Q ss_pred             eeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEc-cccCCCCCCCc-EEeCCCCCC
Q 023962          199 LASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAK-GVIPAGWQPGQ-TYRSLVNFT  273 (274)
Q Consensus       199 I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~-~vip~~~~~G~-~y~t~~QF~  273 (274)
                      |.++|+.+.+    .|..|.+.+||.|.-.+  ..++|+.+|+|+ +-|+.++.. -.+|..-++-. +....+||+
T Consensus       162 V~KlE~~qdg----~WinlpK~dYNhFVgT~--LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs  231 (232)
T COG4305         162 VMKLEYEQDG----KWINLPKMDYNHFVGTN--LGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS  231 (232)
T ss_pred             eEEEEEecCC----eEeeccccccceeeccc--cCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence            9999999974    89999999999887554  567899999999 999999875 24444332211 235678885

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.93  E-value=1.3e-25  Score=184.12  Aligned_cols=98  Identities=40%  Similarity=0.760  Sum_probs=83.7

Q ss_pred             eeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-C-----CCCCCCCEEEEEee
Q 023962           45 SPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-H-----PECSGNPVTVVITD  118 (274)
Q Consensus        45 ~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~-----~~c~~~sv~V~V~D  118 (274)
                      .+|+||||+..+     .||| |+.    .+++.++||+++.+|++|+.||+||||+|. +     ..|++++|+|+|+|
T Consensus        22 ~~G~AT~Y~~~~-----~gAC-~~~----~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD   91 (125)
T PLN03024         22 TPGIATFYTSYT-----PSAC-YRG----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVD   91 (125)
T ss_pred             cceEEEEeCCCC-----Cccc-cCC----CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEc
Confidence            469999998743     5899 444    136789999999999999999999999996 2     36899999999999


Q ss_pred             cCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEE
Q 023962          119 ECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRR  163 (274)
Q Consensus       119 ~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~  163 (274)
                      +||+. |.   .|||||++||.+|++       .+.|+++|+|.+
T Consensus        92 ~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v~V~y~~  125 (125)
T PLN03024         92 HCPSG-CA---STLDLSREAFAQIAN-------PVAGIINIDYIP  125 (125)
T ss_pred             CCCCC-CC---CceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence            99941 75   599999999999998       588999999963

>PLN00115 pollen allergen group 3; Provisional

Probab=99.91  E-value=4.5e-24  Score=173.12  Aligned_cols=94  Identities=22%  Similarity=0.518  Sum_probs=86.5

Q ss_pred             ceEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcE-EccCCCCceEEECCCCCCCCCeEEEEEEccCCeE
Q 023962          171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWL-PMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKA  249 (274)
Q Consensus       171 ~ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~-~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~  249 (274)
                      .+|.|+|++||+++||++.+ |    ++|.+|||++.+  +..|+ +|+|+||++|+++.+.+++|||+||+|+ .+|++
T Consensus        24 ~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g--~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~   95 (118)
T PLN00115         24 TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKG--AKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGY   95 (118)
T ss_pred             CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecC--CCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCE
Confidence            48999999999999998765 3    269999999997  67999 9999999999998765789999999999 99999


Q ss_pred             EEEccccCCCCCCCcEEeCCCCC
Q 023962          250 LVAKGVIPAGWQPGQTYRSLVNF  272 (274)
Q Consensus       250 vv~~~vip~~~~~G~~y~t~~QF  272 (274)
                      ++++||||++|++|++|++++||
T Consensus        96 ~va~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         96 RVVDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             EEECceECCCCCCCCEEeccccC
Confidence            99999999999999999999998

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.89  E-value=8.5e-23  Score=156.16  Aligned_cols=81  Identities=44%  Similarity=0.923  Sum_probs=68.2

Q ss_pred             EEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccC-CeEEE
Q 023962          173 IAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAES-GKALV  251 (274)
Q Consensus       173 i~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~-G~~vv  251 (274)
                      |+|+|+++|++||++|+|.|+++.++|++|||++++  +.+|++|+|+||++|+++. +++.+||+||||+ .+ |++++
T Consensus         1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~--s~~W~~m~r~wGa~W~~~~-~~~~~pls~Rvts-~~~G~~vv   76 (82)
T PF01357_consen    1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSG--SGNWIPMKRSWGAVWQIDS-NPPGGPLSFRVTS-GDSGQTVV   76 (82)
T ss_dssp             EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETT--SSS-EE-EEECTTEEEEE--SS--SSEEEEEEE-TTTSEEEE
T ss_pred             CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCC--CCCceEeecCcCceEEECC-CCcCCCEEEEEEE-cCCCeEEE
Confidence            689999999999999999999999999999999998  6789999999999999986 4788999999999 66 99999


Q ss_pred             EccccC
Q 023962          252 AKGVIP  257 (274)
Q Consensus       252 ~~~vip  257 (274)
                      ++||||
T Consensus        77 ~~nViP   82 (82)
T PF01357_consen   77 ADNVIP   82 (82)
T ss_dssp             EEEEE-
T ss_pred             EecccC
Confidence            999998

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.85  E-value=7.5e-22  Score=152.57  Aligned_cols=75  Identities=33%  Similarity=0.681  Sum_probs=67.3

Q ss_pred             EEEeCccccCCCCCCCcEEEEEEc--CCCCCC-CCEEEEEeecCCCC---------CCCCCCceEEeChhhhhhhhccCc
Q 023962           80 ISAGGPSLYKSGKGCGACYQVKCT--HPECSG-NPVTVVITDECPGG---------PCVSESVHFDLSGTAFGAMAISGK  147 (274)
Q Consensus        80 ~aA~s~~~y~~g~~CG~C~eV~c~--~~~c~~-~sv~V~V~D~Cp~~---------~C~~~~~~~DLs~~AF~~la~~~~  147 (274)
                      +||+|+.+|++|++||+||||+|.  +..|.+ ++|+|+|+|+||++         ||.+++.|||||.+||.+|+.   
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~---   77 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ---   77 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence            479999999999999999999996  457864 59999999999973         798778999999999999998   


Q ss_pred             ccccccCcEEEEEE
Q 023962          148 ADQLRNVGVLQIQH  161 (274)
Q Consensus       148 ~~~~~~~G~~~I~w  161 (274)
                          .+.|+++|+|
T Consensus        78 ----~~~Gvi~v~y   87 (87)
T smart00837       78 ----YKAGIVPVKY   87 (87)
T ss_pred             ----hcCCEEeeEC
Confidence                5899999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.74  E-value=2.8e-18  Score=129.37  Aligned_cols=71  Identities=42%  Similarity=0.890  Sum_probs=60.5

Q ss_pred             EEEeCccccCCCCCCCcEEEEEEc---CCC--CCC--CCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccc
Q 023962           80 ISAGGPSLYKSGKGCGACYQVKCT---HPE--CSG--NPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLR  152 (274)
Q Consensus        80 ~aA~s~~~y~~g~~CG~C~eV~c~---~~~--c~~--~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~  152 (274)
                      +||++..+|++|..||+||+++|.   ...  |..  ++|+|+|+|+||+  |.  .+|||||+.||++|+.       .
T Consensus         1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~   69 (78)
T PF03330_consen    1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P   69 (78)
T ss_dssp             EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred             CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence            589999999999999999999993   322  665  9999999999999  98  4899999999999998       5


Q ss_pred             cCcEEEEEE
Q 023962          153 NVGVLQIQH  161 (274)
Q Consensus       153 ~~G~~~I~w  161 (274)
                      +.|+++|+|
T Consensus        70 ~~G~i~V~w   78 (78)
T PF03330_consen   70 DAGVIPVEW   78 (78)
T ss_dssp             TCSSEEEEE
T ss_pred             CceEEEEEC
Confidence            899999999

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=99.15  E-value=4.2e-11  Score=95.89  Aligned_cols=64  Identities=33%  Similarity=0.617  Sum_probs=46.9

Q ss_pred             CCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEee
Q 023962           90 SGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVEC  166 (274)
Q Consensus        90 ~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C  166 (274)
                      +...||+|++||.+   -.+.+++|+|||+|+.       ++|||.+.+|++|-.+|++   ...|.+.|+|++|+|
T Consensus        56 gq~~CGkClrVTNt---~tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   56 GQDSCGKCLRVTNT---ATGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC  119 (119)
T ss_dssp             SGGGTT-EEEEE-T---TT--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred             CcccccceEEEEec---CCCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence            45789999999974   2578999999999986       5899999999999765443   578999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=98.55  E-value=4.7e-07  Score=73.86  Aligned_cols=74  Identities=20%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             CCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccC
Q 023962           75 PFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNV  154 (274)
Q Consensus        75 p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~  154 (274)
                      |...+|.+...--+-++..||.|+|++.     ++++|.|..+|.-.        +.|+|+.+||++|.+ |++   ...
T Consensus        40 p~Fp~IGg~~~V~gWnS~~CGtC~~lty-----~g~si~vlaID~a~--------~gfnis~~A~n~LT~-g~a---~~l  102 (119)
T PF07249_consen   40 PNFPYIGGAPAVAGWNSPNCGTCWKLTY-----NGRSIYVLAIDHAG--------GGFNISLDAMNDLTN-GQA---VEL  102 (119)
T ss_dssp             TTTTSEEEETT--STT-TTTT-EEEEEE-----TTEEEEEEEEEE-S--------SSEEE-HHHHHHHHT-S-C---CCC
T ss_pred             CCCCeeccccccccCCCCCCCCeEEEEE-----CCeEEEEEEEecCC--------CcccchHHHHHHhcC-Ccc---cce
Confidence            3345677776544336789999999997     78999999999954        359999999999997 444   467


Q ss_pred             cEEEEEEEEEe
Q 023962          155 GVLQIQHRRVE  165 (274)
Q Consensus       155 G~~~I~w~~V~  165 (274)
                      |+|+++|++|+
T Consensus       103 G~V~a~~~qV~  113 (119)
T PF07249_consen  103 GRVDATYTQVD  113 (119)
T ss_dssp             -EEE-EEEEE-
T ss_pred             eEEEEEEEEcC
Confidence            99999999996

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>TIGR00413 rlpA rare lipoprotein A

Probab=97.48  E-value=0.0013  Score=58.39  Aligned_cols=96  Identities=24%  Similarity=0.229  Sum_probs=69.2

Q ss_pred             EEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCC
Q 023962           47 AGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCV  126 (274)
Q Consensus        47 G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~  126 (274)
                      |.|+|||..-. | ..-|+|-.-  +   ...++||-.+      .-.|..++|+..   -++++|+|+|.|++|-   .
T Consensus         1 G~ASwYg~~f~-G-~~TAnGe~y--~---~~~~tAAHkt------LPlgT~V~VtNl---~ngrsviVrVnDRGPf---~   61 (208)
T TIGR00413         1 GLASWYGPKFH-G-RKTANGEVY--N---MKALTAAHKT------LPFNTYVKVTNL---HNNRSVIVRINDRGPF---S   61 (208)
T ss_pred             CEEeEeCCCCC-C-CcCCCCeec--C---CCcccccccc------CCCCCEEEEEEC---CCCCEEEEEEeCCCCC---C
Confidence            67999987311 0 123443322  1   1245666432      378999999974   2589999999999996   2


Q ss_pred             CCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCC
Q 023962          127 SESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYP  169 (274)
Q Consensus       127 ~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~  169 (274)
                      . ..-+|||..|+.+|.-       ...|+.+|+.+.+.....
T Consensus        62 ~-gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~   96 (208)
T TIGR00413        62 D-DRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN   96 (208)
T ss_pred             C-CCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence            2 3689999999999987       689999999999988653

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=97.26  E-value=0.00091  Score=60.34  Aligned_cols=61  Identities=25%  Similarity=0.276  Sum_probs=51.7

Q ss_pred             CCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962           93 GCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECN  167 (274)
Q Consensus        93 ~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~  167 (274)
                      -=|.-++||..+   ++++|+|+|.|++|   +..+ ..||||..|+++|.-       .+.|+.+|..+.+.+.
T Consensus       118 P~~t~v~VtNl~---NgrsvvVRINDRGP---f~~g-RiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~  178 (233)
T COG0797         118 PLPTYVRVTNLD---NGRSVVVRINDRGP---FVSG-RIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA  178 (233)
T ss_pred             CCCCEEEEEEcc---CCcEEEEEEeCCCC---CCCC-cEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence            356788998753   68999999999999   5544 589999999999987       6899999999999876

>PRK10672 rare lipoprotein A; Provisional

Probab=96.63  E-value=0.028  Score=53.93  Aligned_cols=94  Identities=22%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             eEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCC
Q 023962           46 PAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPC  125 (274)
Q Consensus        46 ~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C  125 (274)
                      .|.|+|||..-..  ..-|.|-..  +   ...+.||-.+      .--|..++|+...   ++++|+|+|.|++|-   
T Consensus        80 ~G~ASwYg~~f~G--~~TA~Ge~~--~---~~~~tAAH~t------LPlps~vrVtNl~---ngrsvvVrVnDRGP~---  140 (361)
T PRK10672         80 AGLAAIYDAEAGS--NLTASGERF--D---PNALTAAHPT------LPIPSYVRVTNLA---NGRMIVVRINDRGPY---  140 (361)
T ss_pred             EEEEEEeCCccCC--CcCcCceee--c---CCcCeeeccC------CCCCCEEEEEECC---CCcEEEEEEeCCCCC---
Confidence            7888888864210  012222111  1   1245666433      3678899999742   689999999999996   


Q ss_pred             CCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEee
Q 023962          126 VSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVEC  166 (274)
Q Consensus       126 ~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C  166 (274)
                      .. ..-||||..|+++|.-       ...+.+.|+.-.|.=
T Consensus       141 ~~-gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v~~  173 (361)
T PRK10672        141 GP-GRVIDLSRAAADRLNT-------SNNTKVRIDPIIVAP  173 (361)
T ss_pred             CC-CCeeEcCHHHHHHhCC-------CCCceEEEEEEeeCC
Confidence            22 3689999999999986       355777777766633

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=93.10  E-value=0.1  Score=46.33  Aligned_cols=55  Identities=24%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             EEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhh
Q 023962           80 ISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTA  138 (274)
Q Consensus        80 ~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~A  138 (274)
                      +||.+-.-..+...|++|||++=++..-++|+.+|+|++.=-+    -..+||||..+-
T Consensus        70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~d----lg~n~FDl~iPG  124 (201)
T PF02015_consen   70 FAAASITGGSESSWCCACYELTFTSGPLKGKKMIVQVTNTGGD----LGSNQFDLAIPG  124 (201)
T ss_dssp             EEEEE-TT--HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TT----TTTTEEEEE-TT
T ss_pred             eeeeeecCCCCCCcccceEEEEEcCCCcCCCEeEEEecccCCC----CCCCeEEEEeCC
Confidence            4555422223347899999999874445789999999998543    125899998543

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		3e-54
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		1e-52
1bmw_A	96	A Fibronectin Type Iii Fold In Plant Allergens: The		4e-09
3ft1_A	100	Crystal Structure Of Pollen Allergen Phl P 3 Length		2e-06
2jnz_A	108	Solution Structure Of Phl P 3, A Major Allergen Fro		2e-06

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score =  207 bits (528), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/248 (44%), Positives = 149/248 (60%), Gaps = 14/248 (5%)
Query: 30  PKLLNITMAESGSDWSPAGATWYGSPTXXXXXXXXXX-XXXXVEQAPFSALISAGGPSLY 88
           P   NIT   +G  W  A ATWYG P                V   P+S + + G   ++
Sbjct: 6   PPGXNITTNYNGK-WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIF 64
Query: 89  KSGKGCGACYQVKCTH-PECSGNPVTVVITDEC--PGGPCVSESVHFDLSGTAFGAMAIS 145
           K GKGCG+CY+V+C   PECSGNPVTV ITD    P  P      HFDLSG AFG++A  
Sbjct: 65  KDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAP-----YHFDLSGKAFGSLAKP 119
Query: 146 GKADQLRNVGVLQIQHRRVECNYP-GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDL 204
           G  D++R+ G++ ++ RRV C YP G +I FH++ G NPNY A L++Y   DGD+  +++
Sbjct: 120 GLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 179
Query: 205 QQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQ 264
           Q  L  S  W PM+ SWGA+W+++    L+ PFS+RLT +ESGK ++AK VIPA W+P  
Sbjct: 180 QDKL--SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLT-SESGKKVIAKDVIPANWRPDA 236
Query: 265 TYRSLVNF 272
            Y S V F
Sbjct: 237 VYTSNVQF 244

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 14/240 (5%)
Query: 34  NITMAESGSDWSPAGATWYGSPTXXXXXXXXXX-XXXXVEQAPFSALISAGGPSLYKSGK 92
           NIT A  G  W  A +TWYG PT               V++ PFS +   G   ++KSG+
Sbjct: 10  NIT-ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGR 68
Query: 93  GCGACYQVKCTHPE-CSGNPVTVVITD--ECPGGPCVSESVHFDLSGTAFGAMAISGKAD 149
           GCG+C+++KCT PE CSG PV V ITD  E P  P      HFDLSG AFGAMA  G   
Sbjct: 69  GCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP-----YHFDLSGHAFGAMAKKGDEQ 123
Query: 150 QLRNVGVLQIQHRRVECNYP-GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQAL 208
           +LR+ G L++Q RRV+C YP G ++ FHV+ GSNPNY A L++Y +GDGD+ +VD+++  
Sbjct: 124 KLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK- 182
Query: 209 DSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
              D W+ ++ SWGA+W+++    L  PF++R T  E G    A+ VIP GW+   +Y S
Sbjct: 183 -GKDKWIELKESWGAIWRIDTPDKLTGPFTVRYT-TEGGTKTEAEDVIPEGWKADTSYES 240

>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The Solution Structure Of Phl Pii From Timothy Grass Pollen, Nmr, 38 Structures Length = 96

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGS 231
           ++ F V+ GSN  + A L++YE GD  +A V+L++    SD W+ M +  G VW  +   
Sbjct: 3   KVTFTVEKGSNEKHLAVLVKYE-GD-TMAEVELREH--GSDEWVAMTKGEGGVWTFDSEE 58
Query: 232 TLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTY 266
            L+ PF+ R    E G   V   V+P  +  G TY
Sbjct: 59  PLQGPFNFRF-LTEKGMKNVFDDVVPEKYTIGATY 92

>pdb|3FT1|A Chain A, Crystal Structure Of Pollen Allergen Phl P 3 Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYG 230
           +++ F V  GS+P      I+Y      LA V+L+Q    S+ W P+ +  G VW++   
Sbjct: 2   VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQ--HGSEEWEPLTKK-GNVWEVKSS 58
Query: 231 STLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYR 267
             L  PF+ R   ++ G   V   VIP  +  G+TY+
Sbjct: 59  KPLVGPFNFRF-MSKGGMRNVFDEVIPTAFSIGKTYK 94

>pdb|2JNZ|A Chain A, Solution Structure Of Phl P 3, A Major Allergen From Timothy Grass Pollen Length = 108

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYG 230
           +++ F V  GS+P      I+Y      LA V+L+Q    S+ W P+ +  G VW++   
Sbjct: 13  VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQ--HGSEEWEPLTKK-GNVWEVKSS 69
Query: 231 STLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYR 267
             L  PF+ R   ++ G   V   VIP  +  G+TY+
Sbjct: 70  KPLVGPFNFRF-MSKGGMRNVFDEVIPTAFSIGKTYK 105
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	1e-70
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	3e-66
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	2e-49
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	4e-38
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	5e-38
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	1e-33
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	8e-10

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score =  216 bits (552), Expect = 1e-70
 Identities = 111/239 (46%), Positives = 149/239 (62%), Gaps = 11/239 (4%)

Query: 38  AESGSDWSPAGATWYGSPTGAGSD--GGACGYGAAVEQAPFSALISAGGPSLYKSGKGCG 95
                 W  A ATWYG P GAG+   GGACG    V   P+S + + G   ++K GKGCG
Sbjct: 13  TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIFKDGKGCG 71

Query: 96  ACYQVKCT-HPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNV 154
           +CY+V+C   PECSGNPVTV ITD            HFDLSG AFG++A  G  D++R+ 
Sbjct: 72  SCYEVRCKEKPECSGNPVTVYITDMNYEPIA---PYHFDLSGKAFGSLAKPGLNDKIRHC 128

Query: 155 GVLQIQHRRVECNYP-GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDS 213
           G++ ++ RRV C YP G +I FH++ G NPNY A L++Y   DGD+  +++Q     S  
Sbjct: 129 GIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDK--LSAE 186

Query: 214 WLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
           W PM+ SWGA+W+++    L+ PFS+RLT +ESGK ++AK VIPA W+P   Y S V F
Sbjct: 187 WKPMKLSWGAIWRMDTAKALKGPFSIRLT-SESGKKVIAKDVIPANWRPDAVYTSNVQF 244

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score =  205 bits (523), Expect = 3e-66
 Identities = 109/235 (46%), Positives = 149/235 (63%), Gaps = 11/235 (4%)

Query: 38  AESGSDWSPAGATWYGSPTGAGSD--GGACGYGAAVEQAPFSALISAGGPSLYKSGKGCG 95
           A  G  W  A +TWYG PTGAG    GGACGY   V++ PFS +   G   ++KSG+GCG
Sbjct: 13  ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCG 71

Query: 96  ACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNV 154
           +C+++KCT PE CSG PV V ITD+           HFDLSG AFGAMA  G   +LR+ 
Sbjct: 72  SCFEIKCTKPEACSGEPVVVHITDDNEEPIA---PYHFDLSGHAFGAMAKKGDEQKLRSA 128

Query: 155 GVLQIQHRRVECNY-PGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDS 213
           G L++Q RRV+C Y  G ++ FHV+ GSNPNY A L++Y +GDGD+ +VD+++     D 
Sbjct: 129 GELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK--GKDK 186

Query: 214 WLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
           W+ ++ SWGA+W+++    L  PF++R T  E G    A+ VIP GW+   +Y S
Sbjct: 187 WIELKESWGAIWRIDTPDKLTGPFTVRYT-TEGGTKTEAEDVIPEGWKADTSYES 240

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score =  161 bits (408), Expect = 2e-49
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 40/236 (16%)

Query: 43  DWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSG----KGCGACY 98
           D     AT+ GS    G  GGA          P    I+A  P+    G       G+  
Sbjct: 5   DLHEGYATYTGS----GYSGGAFLLD----PIPSDMEITAINPADLNYGGVKAALAGSYL 56

Query: 99  QVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQ 158
           +V+           TV +TD  P G         DLS  AF  +            G + 
Sbjct: 57  EVE-----GPKGKTTVYVTDLYPEGA----RGALDLSPNAFRKIGN-------MKDGKIN 100

Query: 159 IQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQ 218
           I+ R V+    G    + +  GS+  + A  +   +    +  ++ ++       W+ M+
Sbjct: 101 IKWRVVKAPITG-NFTYRIKEGSSRWWAAIQV--RNHKYPVMKMEYEK----DGKWINME 153

Query: 219 RSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAK--GVIPAGWQPGQTYRSLVNF 272
           +     +     +       +R+T    GK +      +  +G     T    V F
Sbjct: 154 KMDYNHFVST--NLGTGSLKVRMT-DIRGKVVKDTIPKLPESGTSKAYTVPGHVQF 206

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score =  129 bits (325), Expect = 4e-38
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 160 QHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQR 219
            H         +++ F V  GS+P      I+Y      LA V+L+Q    S+ W P+ +
Sbjct: 6   HHHHG----SAVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQH--GSEEWEPLTK 59

Query: 220 SWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
             G VW++     L  PF+ R   ++ G   V   VIP  +  G+TY+ 
Sbjct: 60  K-GNVWEVKSSKPLVGPFNFRFM-SKGGMRNVFDEVIPTAFSIGKTYKP 106

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score =  128 bits (323), Expect = 5e-38
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 170 GMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNY 229
            +++ F V  GS+P      I+Y      LA V+L+Q    S+ W P+ +  G VW++  
Sbjct: 1   AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQH--GSEEWEPLTKK-GNVWEVKS 57

Query: 230 GSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRSLVNF 272
              L  PF+ R   ++ G   V   VIP  +  G+TY+     
Sbjct: 58  SKPLVGPFNFRFM-SKGGMRNVFDEVIPTAFSIGKTYKPEEQE 99

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score =  117 bits (294), Expect = 1e-33
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGS 231
           ++ F V+ GSN  + A L++YE        V+L++    SD W+ M +  G VW  +   
Sbjct: 3   KVTFTVEKGSNEKHLAVLVKYEGDTMA--EVELREH--GSDEWVAMTKGEGGVWTFDSEE 58

Query: 232 TLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
            L+ PF+ R    E G   V   V+P  +  G TY  
Sbjct: 59  PLQGPFNFRFL-TEKGMKNVFDDVVPEKYTIGATYAP 94

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181

 Score = 56.1 bits (134), Expect = 8e-10
 Identities = 33/163 (20%), Positives = 47/163 (28%), Gaps = 47/163 (28%)

Query: 42  SDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPF----SALISAGGPSLYKS------G 91
           +  S A  T Y       S  GACG G A   A F     + ++A     + S      G
Sbjct: 12  NGKSCASTTNYH-----DSHKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 92  KGCGACYQVKCTH--------PECSGNPVTVVITDECPGGP----------------CVS 127
           + CG C ++  T         P   G   T +IT+ CP                      
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYG 126

Query: 128 ESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPG 170
             +H DL       +   G           +     V C+   
Sbjct: 127 YELHLDLEN-GRSQVTGMG-------WNNPETTWEVVNCDSEH 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.95
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.94
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.94
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.91
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.7
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.19
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	98.47
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	98.43
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	98.36
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.34
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	98.33
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	98.31
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	95.67

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=4.4e-66  Score=466.13  Aligned_cols=233  Identities=49%  Similarity=1.008  Sum_probs=214.8

Q ss_pred             ccccccccCCCCeeeEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-CCCCC
Q 023962           32 LLNITMAESGSDWSPAGATWYGSPTGAGS--DGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECS  108 (274)
Q Consensus        32 ~~~~~~~~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~~~c~  108 (274)
                      ..++. ..++++|+.|+||||+++++.++  ++|||||++ ++.+|++.++||++..+|++|+.||+||||+|. ++.|.
T Consensus         8 ~~~~~-~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~-~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~   85 (245)
T 2hcz_X            8 GPNIT-TNYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECS   85 (245)
T ss_dssp             CCCCC-SCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCC-TTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBC
T ss_pred             CCCCC-cccCCceeeeEEEEeCCCCCCCcCCCCccCCCCC-CCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccC
Confidence            44554 56888999999999999887777  689999999 677889999999999999999999999999998 66799


Q ss_pred             CCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCC-ceEEEEEecCCCCceEE
Q 023962          109 GNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPG-MRIAFHVDSGSNPNYFA  187 (274)
Q Consensus       109 ~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g-~ni~~~vk~GSs~~w~a  187 (274)
                      +++|+|+|||+||   |.+++.|||||+.||++|+.+|++++|++.|+++|+||+|+|+++| +||+|++++||++||++
T Consensus        86 ~~sv~V~VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~a  162 (245)
T 2hcz_X           86 GNPVTVYITDMNY---EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLA  162 (245)
T ss_dssp             SSCEEEEEEEECC---CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCCC
T ss_pred             CCCEEEEEEeccC---CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceEE
Confidence            9999999999997   6555799999999999999999999999999999999999999983 58999999999999999


Q ss_pred             EEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEccccCCCCCCCcEEe
Q 023962          188 TLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYR  267 (274)
Q Consensus       188 v~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~~vip~~~~~G~~y~  267 (274)
                      |+|.|+++.++|++|||++++  +..|++|+|+|||+|+++...++.+||+||||+ .+|++|+++||||++|++|++|+
T Consensus       163 vlv~n~~g~g~V~~V~ik~~~--~~~W~~m~r~~G~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty~  239 (245)
T 2hcz_X          163 VLVKYVADDGDIVLMEIQDKL--SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVYT  239 (245)
T ss_dssp             EEEECCCTTCCEEEEEBCCSS--SCSCBCCEEEETTEEECSCCSSCCSSCCEEEEE-TTSCEEEESCSCCSSCCTTCEEE
T ss_pred             EEEEecCCCCCEEEEEEEeCC--CCceeECccCCCCEEEECCCCCCCCCEEEEEEE-eCCcEEEEeeeecCCCCCCCEEe
Confidence            999999988999999999987  568999999999999998754478899999999 99999999999999999999999


Q ss_pred             CCCCC
Q 023962          268 SLVNF  272 (274)
Q Consensus       268 t~~QF  272 (274)
                      +.+||
T Consensus       240 ~~~qf  244 (245)
T 2hcz_X          240 SNVQF  244 (245)
T ss_dssp             CSCCC
T ss_pred             Ccccc
Confidence            99999

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=3.7e-65  Score=459.04  Aligned_cols=231  Identities=48%  Similarity=0.989  Sum_probs=206.1

Q ss_pred             cccccccccCCCCeeeEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-CCCC
Q 023962           31 KLLNITMAESGSDWSPAGATWYGSPTGAGS--DGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPEC  107 (274)
Q Consensus        31 ~~~~~~~~~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~~~c  107 (274)
                      .++.++ +.++++|+.|+||||+++++.++  ++|||||++ ++..|++.++||+|..+|++|+.||+||||+|. ++.|
T Consensus         7 ~~p~~~-~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~-~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~~C   84 (241)
T 1n10_A            7 PGPNIT-ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEAC   84 (241)
T ss_dssp             CCSCCC-CBCCCSCEEEEEEEEC----------CCTTCCCC-TTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTB
T ss_pred             CCCCcC-CcccCCceeeEEEEeCCCCCCCcCCCCeeCCCCC-cCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCCcc
Confidence            355555 67889999999999999887776  789999999 677889999999999999999999999999998 5679


Q ss_pred             CCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCC-ceEEEEEecCCCCceE
Q 023962          108 SGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPG-MRIAFHVDSGSNPNYF  186 (274)
Q Consensus       108 ~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g-~ni~~~vk~GSs~~w~  186 (274)
                      .+++|+|+|||+|+   |++++.|||||+.||.+|+.+|++++|++.|+++|+||+|+|+++| +||+|++++||++||+
T Consensus        85 ~~~~v~V~VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~  161 (241)
T 1n10_A           85 SGEPVVVHITDDNE---EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYL  161 (241)
T ss_dssp             CSCCEEEEEEEECS---SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTEE
T ss_pred             CCCCEEEEEeEecC---CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcceE
Confidence            99999999999994   8666899999999999999999999999999999999999999984 5899999999999999


Q ss_pred             EEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEccccCCCCCCCcEE
Q 023962          187 ATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTY  266 (274)
Q Consensus       187 av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~~vip~~~~~G~~y  266 (274)
                      +|+|.|+++.++|++|||++++  +..|++|+|+|||+|+++...++.+||+||||+ .+|++|+++||||++|++|++|
T Consensus       162 ~vlv~n~~g~g~V~~V~ik~~~--~~~W~~m~r~wG~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty  238 (241)
T 1n10_A          162 ALLVKYVNGDGDVVAVDIKEKG--KDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT-EGGTKTEAEDVIPEGWKADTSY  238 (241)
T ss_dssp             EEEEECCCCSSCEEEEEEEETT--CCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE-SSSCEEEEEEEECSSCCSSEEE
T ss_pred             EEEEEecCCCCCEEEEEEEeCC--CCCeEECccCcCcEEEeCCCCCCCCCEEEEEEE-eCCcEEEEccccCCCCCCCCEE
Confidence            9999999988899999999987  578999999999999998764578899999999 9999999999999999999999


Q ss_pred             eCC
Q 023962          267 RSL  269 (274)
Q Consensus       267 ~t~  269 (274)
                      ++.
T Consensus       239 ~~~  241 (241)
T 1n10_A          239 ESK  241 (241)
T ss_dssp             EC-
T ss_pred             eCC
Confidence            974

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=1.3e-53  Score=376.64  Aligned_cols=197  Identities=23%  Similarity=0.288  Sum_probs=178.3

Q ss_pred             CCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCC----CCCCcEEEEEEcCCCCCCCCEEEEEe
Q 023962           42 SDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSG----KGCGACYQVKCTHPECSGNPVTVVIT  117 (274)
Q Consensus        42 ~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g----~~CG~C~eV~c~~~~c~~~sv~V~V~  117 (274)
                      ++.++|+||||+...    .+||||+..    .|++.++||++..+|++|    ..||+||||+|     ++++|+|+|+
T Consensus         4 ~~~~~G~aT~Y~~g~----~~GACG~~~----~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~-----~~gsv~V~v~   70 (208)
T 3d30_A            4 DDLHEGYATYTGSGY----SGGAFLLDP----IPSDMEITAINPADLNYGGVKAALAGSYLEVEG-----PKGKTTVYVT   70 (208)
T ss_dssp             TCCEEEEEEECSTTS----SSCTTCCCC----CCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEE-----TTEEEEEEEE
T ss_pred             CCcEEEEEEEcCCCC----CCCcCCCCC----CCCCCEEEEeCHHHhCCCCcCccccCCEEEEEe-----CCCcEEEEEE
Confidence            346799999999853    389999865    256789999999999987    89999999998     6779999999


Q ss_pred             ecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCCceEEEEEecCCCCceEEEEEEEecCCC
Q 023962          118 DECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPGMRIAFHVDSGSNPNYFATLIEYEDGDG  197 (274)
Q Consensus       118 D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g~ni~~~vk~GSs~~w~av~v~n~~~~~  197 (274)
                      |+||+  |+  ..|||||+.||++|+.       ++.|+++|+||+|+|+++| +|+|++++||++||++|+|.|+++  
T Consensus        71 D~CP~--C~--~~~~DLS~~aF~~la~-------~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs~~~~~~v~v~n~~g--  136 (208)
T 3d30_A           71 DLYPE--GA--RGALDLSPNAFRKIGN-------MKDGKINIKWRVVKAPITG-NFTYRIKEGSSRWWAAIQVRNHKY--  136 (208)
T ss_dssp             EECTT--CC--TTCEEECHHHHHHHSC-------GGGSSEEEEEEEECCCCCS-CCEEEECTTCSSSEEEEEEESCSS--
T ss_pred             ECCCC--CC--CCeEECCHHHHHHhcc-------cCCCEEEEEEEEeCCCCCC-ceeEEEcCCCCCceEEEEEEecCC--
Confidence            99999  96  5899999999999997       6899999999999999998 999999999999999999999986  


Q ss_pred             CeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEEEccccCCCCCC----CcEEeCCCCCC
Q 023962          198 DLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALVAKGVIPAGWQP----GQTYRSLVNFT  273 (274)
Q Consensus       198 ~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv~~~vip~~~~~----G~~y~t~~QF~  273 (274)
                      +|++|||+++    +.|++|+|+|+|+|..+.  ++.+|++||||+ .+|++|  .++||++|++    +.+|++++||+
T Consensus       137 ~v~~v~i~~~----~~W~~m~r~~~n~~~~~~--~~~~pls~rvT~-~~G~~v--~~vip~~w~~~~~~~~~~~~~~Qf~  207 (208)
T 3d30_A          137 PVMKMEYEKD----GKWINMEKMDYNHFVSTN--LGTGSLKVRMTD-IRGKVV--KDTIPKLPESGTSKAYTVPGHVQFP  207 (208)
T ss_dssp             CEEEEEEEET----TEEEEEEECTTSCEEEEC--CCSSSEEEEEEE-TTCCEE--EEEECCCCSSCCSSCEEEECCCCCC
T ss_pred             CEEEEEEecC----CcEEEccccccceeecCC--CCCCCEEEEEEE-CCCCEE--EEEECCCCccCcccceEEeCcCccC
Confidence            9999999986    479999999999887653  567899999999 999999  7899999997    89999999998


Q ss_pred             C
Q 023962          274 P  274 (274)
Q Consensus       274 ~  274 (274)
                      +
T Consensus       208 ~  208 (208)
T 3d30_A          208 E  208 (208)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=99.95  E-value=3.8e-28  Score=190.90  Aligned_cols=98  Identities=31%  Similarity=0.592  Sum_probs=92.6

Q ss_pred             ceEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEE
Q 023962          171 MRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKAL  250 (274)
Q Consensus       171 ~ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~v  250 (274)
                      .+|+|+|++||++||++|+|.|+++.++|++||||+++  +..|++|.| ||++|++++..++.+||+||||+ .+|+++
T Consensus         2 ~~i~F~V~~gs~~~~l~vlv~nv~G~gdI~~V~ik~s~--t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt~-~~G~~~   77 (100)
T 3ft1_A            2 VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHG--SEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFMS-KGGMRN   77 (100)
T ss_dssp             BEEEEEECTTCBTTEEEEEEEEECTTCCEEEEEEECTT--CCCCEECEE-ETTEEEEECSSCCCSSEEEEEEE-TTCCEE
T ss_pred             CCEEEEEecCCCcceEEEEEEEcCCCccEEEEEEEeCC--CCCeEEecc-cCCEeEeCCCCCCCCCEEEEEEE-cCCcEE
Confidence            37999999999999999999999999999999999997  558999999 99999998755688999999999 999999


Q ss_pred             EEccccCCCCCCCcEEeCCCCC
Q 023962          251 VAKGVIPAGWQPGQTYRSLVNF  272 (274)
Q Consensus       251 v~~~vip~~~~~G~~y~t~~QF  272 (274)
                      ++.||||++|++|++|++.+||
T Consensus        78 v~~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           78 VFDEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             EEEEEECTTCCTTCEECCCCBC
T ss_pred             EECeEeCCCCCCCcEEeccccc
Confidence            9999999999999999999998

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.94  E-value=8.8e-28  Score=204.98  Aligned_cols=115  Identities=25%  Similarity=0.404  Sum_probs=97.0

Q ss_pred             CCeeeEEEEEeCCCCCCCCCcCccCCCC----CCCCCCCCCeEEEeCccccCCC------CCCCcEEEEEEc-CC-----
Q 023962           42 SDWSPAGATWYGSPTGAGSDGGACGYGA----AVEQAPFSALISAGGPSLYKSG------KGCGACYQVKCT-HP-----  105 (274)
Q Consensus        42 ~~~~~G~aT~Yg~~~~~g~~~GaCGy~~----~~~~~p~~~~~aA~s~~~y~~g------~~CG~C~eV~c~-~~-----  105 (274)
                      .+|..++||||++.     ++|||||+.    .+.+++++.++||+|+.+|++|      +.||+||||+|+ +.     
T Consensus        12 ~g~~~A~aT~Yg~~-----~gGACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg   86 (181)
T 1wc2_A           12 NGKSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (181)
T ss_dssp             TTEEEEEEEEECCC-----BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceeEecCC-----CCcccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCccccc
Confidence            45999999999995     379999993    1456678899999999999997      899999999997 21     


Q ss_pred             -CC-CCCCEEEEEeecCCC-----CCCCCC-----------CceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962          106 -EC-SGNPVTVVITDECPG-----GPCVSE-----------SVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECN  167 (274)
Q Consensus       106 -~c-~~~sv~V~V~D~Cp~-----~~C~~~-----------~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~  167 (274)
                       .| ++++|+|+|||+||.     +||.++           +.||||+.+| .+|+.       ...|+++|+||+|+|+
T Consensus        87 ~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~-------~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A           87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTG-------MGWNNPETTWEVVNCD  158 (181)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGG-------GTCSSEEEEEEEECHH
T ss_pred             ccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhhh-------hcCCCceeEEEEEeCC
Confidence             22 366899999999993     499643           6899999999 88986       5789999999999998


Q ss_pred             CC
Q 023962          168 YP  169 (274)
Q Consensus       168 ~~  169 (274)
                      ..
T Consensus       159 ~~  160 (181)
T 1wc2_A          159 SE  160 (181)
T ss_dssp             HH
T ss_pred             CC
Confidence            63

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.94  E-value=4.3e-26  Score=181.19  Aligned_cols=98  Identities=31%  Similarity=0.618  Sum_probs=91.1

Q ss_pred             CCceEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCe
Q 023962          169 PGMRIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGK  248 (274)
Q Consensus       169 ~g~ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~  248 (274)
                      .|.||.|+|+++|++||++|+|.|++++++|++||||+.+  +..|++|.|+ |++|+++.+.+|.+||+||||+ .+|+
T Consensus        11 ~g~~v~f~V~~~snp~~l~VlV~nv~G~GdI~~V~Ik~~~--~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvtt-s~G~   86 (108)
T 2jnz_A           11 SAVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHG--SEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFMS-KGGM   86 (108)
T ss_dssp             CCCEEEEEECTTCCSSEEEEEEEEEBTTBCEEEEEEECTT--CCCCEECEEE-TTEEEEECSSCCCSSEEEEEEE-TTTE
T ss_pred             CCccEEEEEecCCCccEEEEEEEEeCCCCCEEEEEEEeCC--CCcEeEcccc-CCEeEeCCCCCCCCCEEEEEEE-cCCc
Confidence            3569999999999999999999999999999999999855  5789999999 9999998755688999999999 9999


Q ss_pred             EEEEccccCCCCCCCcEEeCCC
Q 023962          249 ALVAKGVIPAGWQPGQTYRSLV  270 (274)
Q Consensus       249 ~vv~~~vip~~~~~G~~y~t~~  270 (274)
                      ++++.||||++|++|++|++.+
T Consensus        87 ~~va~nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           87 RNVFDEVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             EEEEEEEECSSCCTTCEECCCC
T ss_pred             EEEECeEECCCCCCCCEEeCCC
Confidence            9999999999999999999864

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.91  E-value=2.5e-26  Score=179.39  Aligned_cols=94  Identities=33%  Similarity=0.652  Sum_probs=86.4

Q ss_pred             eEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEE
Q 023962          172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV  251 (274)
Q Consensus       172 ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv  251 (274)
                      +|+|+|++||++||++|+|.|++  ++|++||||+++  +..|++|+|+||++|+++.+.+|.+||+||||+ .+|++++
T Consensus         3 ~i~F~V~~gs~~~~l~vlv~nv~--gdI~~V~ik~~~--~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~-~~G~~~v   77 (96)
T 1bmw_A            3 KVTFTVEKGSNEKHLAVLVKYEG--DTMAEVELREHG--SDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT-EKGMKNV   77 (96)
T ss_dssp             CCCCCCCTTCSSSBCCBCCCCSS--SCCCCCEECCSS--SSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEE-TTTEECC
T ss_pred             CEEEEEecCCCCceEEEEEEEeC--CCEEEEEEEECC--CCcEEECccCcCceeEeCCCCCCCCCEEEEEEE-cCCcEEE
Confidence            69999999999999999999998  699999999965  578999999999999998764678999999999 9999999


Q ss_pred             EccccCCCCCCCcEEeCCC
Q 023962          252 AKGVIPAGWQPGQTYRSLV  270 (274)
Q Consensus       252 ~~~vip~~~~~G~~y~t~~  270 (274)
                      +.||||++|++|++|++.+
T Consensus        78 ~~nViP~~W~~G~ty~~~~   96 (96)
T 1bmw_A           78 FDDVVPEKYTIGATYAPEE   96 (96)
T ss_dssp             BSSCSCSSCCSSSCCCC--
T ss_pred             EeeEeCCCCCCCCEEeCCC
Confidence            9999999999999999863

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.70  E-value=2.3e-18  Score=139.65  Aligned_cols=66  Identities=27%  Similarity=0.592  Sum_probs=56.8

Q ss_pred             CCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeC-hhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962           89 KSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLS-GTAFGAMAISGKADQLRNVGVLQIQHRRVECN  167 (274)
Q Consensus        89 ~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs-~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~  167 (274)
                      +++..||+|+||++.   .++++|+|+|+|+||.  |     +|||| +.||++|+.++++   ++.|+++|+|++|+|+
T Consensus        58 ~~g~~CG~cv~Vtn~---~nGksV~V~VvD~CP~--g-----gLDLS~~~AF~~Ia~~g~G---~~~G~i~V~w~~V~C~  124 (125)
T 1bw3_A           58 RGQAACGKCLRVTNP---ATGAQITARIVDQCAN--G-----GLDLDWDTVFTKIDTNGIG---YQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             CSGGGTTCEEEEEET---TTTEEEEEEEEECCSS--S-----SCCSCSSSSHHHHCSSCHH---HHHSEEEEEEEEECCC
T ss_pred             CCCcccCCEEEeEeC---CCCCEEEEEEEEeCCC--C-----CCCCCCHHHHHHHhccCCc---ccCcEEEEEEEEEeCC
Confidence            778999999999984   1478999999999997  5     39999 9999999974321   4689999999999997

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.19  E-value=1.9e-10  Score=88.99  Aligned_cols=94  Identities=22%  Similarity=0.210  Sum_probs=73.8

Q ss_pred             eeEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCC
Q 023962           45 SPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGP  124 (274)
Q Consensus        45 ~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~  124 (274)
                      ..|.|+||+..-.  ....|||-..+     ...++||-.+      .-||..++|+..   .++++|+|+|.|+||-  
T Consensus         2 ~~G~ASwYg~~f~--G~~TA~Ge~~~-----~~~~tAAH~t------lP~gt~vrVtNl---~nGksVvVrVnDRGP~--   63 (95)
T 4avr_A            2 DTGEASYYGSRHA--GLRTASGERYN-----PNAMTAAHRT------LPFGARVRVTNL---DNRRSVVVRINDRGPF--   63 (95)
T ss_dssp             EEEEEEECCGGGT--TSBCTTSCBCC-----TTSCEEECSS------SCTTCEEEEEET---TTCCEEEEEEEECCCC--
T ss_pred             CEEEEEEECCccC--CCCCCCccCcC-----CCCCEEEcCC------CCCCcEEEEEEC---CCCcEEEEEEccCCCC--
Confidence            4799999997311  02578876541     2468888763      479999999974   2689999999999998  


Q ss_pred             CCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEe
Q 023962          125 CVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVE  165 (274)
Q Consensus       125 C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~  165 (274)
                      |..  ..||||..||++|+.       ++.|+.+|+|+.+.
T Consensus        64 ~~g--riIDLS~aAa~~Lg~-------~~~G~~~V~ve~~~   95 (95)
T 4avr_A           64 RRG--RIIDVSRKAAEGLGM-------IRSGVAPVRIESLD   95 (95)
T ss_dssp             STT--EEEEECHHHHHHHTC-------TTTSCEEEEEEEC-
T ss_pred             CCC--CEEEeCHHHHHHhCC-------cCCCEEEEEEEEeC
Confidence            863  689999999999987       68999999999763

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=98.47  E-value=4e-07  Score=73.14  Aligned_cols=73  Identities=22%  Similarity=0.476  Sum_probs=57.6

Q ss_pred             CCCCeEEEeCc-cccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCccccccc
Q 023962           75 PFSALISAGGP-SLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRN  153 (274)
Q Consensus        75 p~~~~~aA~s~-~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~  153 (274)
                      |...+|.+... .-| |+..||.|+|++.     ++++|.|..+|.-++        .|+|+.+||+.|.+ |++   ..
T Consensus        41 p~FP~IGg~~~i~gw-ns~~CGtC~~lty-----~g~si~vlaID~a~~--------Gfnis~~A~n~LT~-G~a---~~  102 (120)
T 3m3g_A           41 PRFPYIGGAAAVAGW-NSASCGTCWKLQY-----SGHTIYVLAVDHAAS--------GFNIALDAMNALTG-GQA---VQ  102 (120)
T ss_dssp             TTTTSEEEETTCCST-TCTTTTCEEEEEE-----TTEEEEEEEEEECSS--------SEEECHHHHHHHHT-SCH---HH
T ss_pred             CCCCccccccccccC-CCCCCCceEEEEE-----CCeEEEEEEEecCCC--------ceeecHHHHHHhhC-Ccc---ee
Confidence            33345665543 335 4689999999997     789999999999653        59999999999996 544   35


Q ss_pred             CcEEEEEEEEEe
Q 023962          154 VGVLQIQHRRVE  165 (274)
Q Consensus       154 ~G~~~I~w~~V~  165 (274)
                      .|+++++|++|+
T Consensus       103 lG~V~a~~~~V~  114 (120)
T 3m3g_A          103 LGRVSATATQVP  114 (120)
T ss_dssp             HCEEECEEEEEC
T ss_pred             eeeEeEEEEEcC
Confidence            699999999997

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=98.43  E-value=5.8e-07  Score=72.36  Aligned_cols=72  Identities=22%  Similarity=0.464  Sum_probs=56.1

Q ss_pred             eEEEeCc-cccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEE
Q 023962           79 LISAGGP-SLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVL  157 (274)
Q Consensus        79 ~~aA~s~-~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~  157 (274)
                      +|.+... .-| ++..||.|+|++..   ..+++|.|..+|.-++        .|+|+.+||+.|.+ |++   ...|++
T Consensus        45 FIGg~~~V~gw-nS~~CGtC~~lty~---~~g~si~vlaID~a~~--------Gfnis~~Amn~LT~-G~a---~~lG~V  108 (122)
T 3sul_A           45 YVGAVDTITGW-NSESCGTCYQITWS---GTGKTIHVVGVDVAGN--------GFNVGQRAMDDLTN-GQA---VALGNI  108 (122)
T ss_dssp             EEEEETTCCST-TCTTTTCEEEEEET---TTTEEEEEEEEEECSS--------SEEECHHHHHHHHT-SCH---HHHSEE
T ss_pred             ccccccccccC-CCCCCCceEEEEEc---CCCcEEEEEEEecCCC--------ceeehHHHHHHhcC-Ccc---eecceE
Confidence            3655554 335 45999999999972   1289999999999654        59999999999996 444   347999


Q ss_pred             EEEEEEEee
Q 023962          158 QIQHRRVEC  166 (274)
Q Consensus       158 ~I~w~~V~C  166 (274)
                      +++|++|+=
T Consensus       109 ~a~~~qV~~  117 (122)
T 3sul_A          109 DVTATLVDK  117 (122)
T ss_dssp             EEEEEEECG
T ss_pred             eEEEEEcCH
Confidence            999999973

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.36  E-value=1.1e-06  Score=71.30  Aligned_cols=71  Identities=24%  Similarity=0.499  Sum_probs=55.7

Q ss_pred             CeEEEeCc-cccCCCCCCCcEEEEEEcCCCCCC-----CCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCccccc
Q 023962           78 ALISAGGP-SLYKSGKGCGACYQVKCTHPECSG-----NPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQL  151 (274)
Q Consensus        78 ~~~aA~s~-~~y~~g~~CG~C~eV~c~~~~c~~-----~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~  151 (274)
                      .+|.+... .-| |+..||.|+|++.     ++     ++|.|..+|.-++        .|+|+.+||+.|.+ |++   
T Consensus        44 P~IGg~~~i~gw-ns~~CGtC~~lty-----~g~~~~~~si~vlaID~a~~--------Gfnis~~Amn~LT~-g~a---  105 (127)
T 3suj_A           44 PCIGGSSDIAGY-NSPNCGSCYQLTY-----SSAHTTPKSIYMVAIDRSAE--------GFTASKQAMDDLTN-KRA---  105 (127)
T ss_dssp             TSEEEETTCCST-TCTTTTCEEEEEE-----CCSSSCCEEEEEEEEEECSS--------SEEECHHHHHHHHT-SCH---
T ss_pred             CeeccccccccC-CCCCCCceEEEEE-----CCCCCcceEEEEEEEecCCC--------ceeecHHHHHHhcC-Ccc---
Confidence            45655443 335 4689999999997     45     8999999999654        59999999999996 443   


Q ss_pred             ccCcEEEEEEEEEee
Q 023962          152 RNVGVLQIQHRRVEC  166 (274)
Q Consensus       152 ~~~G~~~I~w~~V~C  166 (274)
                      ...|+++++|++|+=
T Consensus       106 ~~lG~V~~~~~~V~~  120 (127)
T 3suj_A          106 EELGTVNVDVRKVDF  120 (127)
T ss_dssp             HHHSSEEEEEEEECG
T ss_pred             ccceeEEEEEEEeCH
Confidence            356899999999973

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=98.34  E-value=1.1e-06  Score=71.25  Aligned_cols=72  Identities=22%  Similarity=0.404  Sum_probs=58.4

Q ss_pred             CCCCeEEEeCccc-cCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCccccccc
Q 023962           75 PFSALISAGGPSL-YKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRN  153 (274)
Q Consensus        75 p~~~~~aA~s~~~-y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~  153 (274)
                      |...+|.+...-- |+ +..||.|+||+..    ++++|.|+.+|.-++        .|+++.+||++|++.      ..
T Consensus        47 p~FP~IGga~~iagWN-S~~CGtC~~lty~----ng~sI~vlaID~A~~--------gFnIs~~Amn~LT~G------~~  107 (129)
T 2kqa_A           47 PGFPNVGGIPDIAGWD-SPSCGTCWKVTIP----NGNSIFIRGVDSGRG--------GFNVNPTAFTKLVGS------TE  107 (129)
T ss_dssp             SCSSSEEEETTCCSTT-CTTCSCEEEEEET----TTEEEEEEEEEECSS--------SEEECHHHHHHHHSS------SS
T ss_pred             CCCCeeccchhhccCC-CCCCCceEEEEEc----CCCEEEEEEEccCCC--------ceeehHHHHHHhcCC------cc
Confidence            4445666665544 55 8999999999973    688999999999653        699999999999973      46


Q ss_pred             CcEE-EEEEEEEe
Q 023962          154 VGVL-QIQHRRVE  165 (274)
Q Consensus       154 ~G~~-~I~w~~V~  165 (274)
                      .|++ +++|++|+
T Consensus       108 lG~V~~a~~~qV~  120 (129)
T 2kqa_A          108 AGRVDNVNYVQVD  120 (129)
T ss_dssp             SCCBCSCEEEECC
T ss_pred             cCcEeEEEEEEcC
Confidence            8999 99999996

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=98.33  E-value=1.1e-06  Score=70.98  Aligned_cols=71  Identities=21%  Similarity=0.464  Sum_probs=56.0

Q ss_pred             CCeEEEeCc-cccCCCCCCCcEEEEEEcCCCCCC----CCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCccccc
Q 023962           77 SALISAGGP-SLYKSGKGCGACYQVKCTHPECSG----NPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQL  151 (274)
Q Consensus        77 ~~~~aA~s~-~~y~~g~~CG~C~eV~c~~~~c~~----~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~  151 (274)
                      ..+|.+... .-|+ +..||.|+|++.     ++    ++|.|..+|.-++        .|+|+.+||+.|.+ |+++  
T Consensus        44 FP~IGg~~~i~gwn-S~~CGtC~~lty-----~g~~~~~si~vlaID~a~~--------Gfnis~~Amn~LT~-G~a~--  106 (125)
T 3suk_A           44 FPHIGASSDIGGFN-SPACGNCYTISF-----TFQGVTRSINLVAIDHAGN--------GFNVAQAAMDELTN-GNAV--  106 (125)
T ss_dssp             TTSEEEETTCCSTT-CTTTTCEEEEEE-----EETTEEEEEEEEEEEECSS--------SEEECHHHHHHHHT-SCHH--
T ss_pred             CCeeccccccccCC-CCCCCeeEEEEE-----cCCCcceEEEEEEEecCCC--------ceeecHHHHHHhcC-Cccc--
Confidence            345665544 3364 589999999997     45    8999999999654        59999999999997 4443  


Q ss_pred             ccCcEEEEEEEEEe
Q 023962          152 RNVGVLQIQHRRVE  165 (274)
Q Consensus       152 ~~~G~~~I~w~~V~  165 (274)
                       ..|+++++|++|+
T Consensus       107 -~lG~V~~~~~~V~  119 (125)
T 3suk_A          107 -ALGTIDVQSQQVA  119 (125)
T ss_dssp             -HHCEEEEEEEEEC
T ss_pred             -ccceEeEEEEEcC
Confidence             4699999999997

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=98.31  E-value=1.4e-06  Score=70.96  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=58.7

Q ss_pred             CCCCeEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccC
Q 023962           75 PFSALISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNV  154 (274)
Q Consensus        75 p~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~  154 (274)
                      |.-.+|.+..   | ++..||.|+||+.     ++++|.|..+|.-.+      ..-|||+.+||+.|.+...+.+....
T Consensus        45 p~FP~igg~~---w-ns~~CGtCwkLtY-----~G~sI~vlaID~a~~------g~~FnIs~~Amn~LT~G~~a~~a~el  109 (136)
T 3sum_A           45 LNFPHFVAAP---E-AQTECGSCWKLRY-----KGNHAFVTVVDRVEE------ANLFVGGTDLVKNLTTFNGAPEGYDW  109 (136)
T ss_dssp             TTTTSEEECC---B-TTBCTTCEEEEEE-----TTEEEEEEEEECCCS------TTEEEECHHHHHHHTCBTTBCHHHHH
T ss_pred             CCCCcccccc---c-CCCCCCceEEEEE-----CCeEEEEEEEecCCC------cceEeehHHHHHHHhCCCccccceec
Confidence            3345666655   5 5689999999997     789999999999654      12399999999999973222222567


Q ss_pred             cEEEE-EEEEEee
Q 023962          155 GVLQI-QHRRVEC  166 (274)
Q Consensus       155 G~~~I-~w~~V~C  166 (274)
                      |++++ +|++|+=
T Consensus       110 G~Vda~~~~qVd~  122 (136)
T 3sum_A          110 GTAQLFSAYQVDG  122 (136)
T ss_dssp             SEEECSEEEEECG
T ss_pred             ceeeeeEEEEcCH
Confidence            99999 9999973

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=95.67  E-value=0.006  Score=52.92  Aligned_cols=53  Identities=26%  Similarity=0.325  Sum_probs=35.8

Q ss_pred             EEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeCh
Q 023962           80 ISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSG  136 (274)
Q Consensus        80 ~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~  136 (274)
                      +||.+-.--.....|++|||++=+.....+|+.+|+|++.-.+  =  ..+||||..
T Consensus        72 FaA~~~~g~~e~~~Cc~C~~LtFt~~~~~GKkmiVQ~TNtG~D--l--~~n~FDl~i  124 (210)
T 2eng_A           72 FAATSIAGSNEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGD--L--GSNHFDLNI  124 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSGGGTTCEEEEEEEEC---------CCEEEEEC
T ss_pred             eeeeeccCCccccccceeEEEEEcCCCcCCCEEEEEEecccCC--C--CCCceeEec
Confidence            5665433222346899999999774445789999999999876  2  258999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	3e-43
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	4e-38
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	2e-34
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	7e-23

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  142 bits (359), Expect = 3e-43
 Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 34  NITMAESGSDWSPAGATWYGSPTGAGSD--GGACGYGAAVEQAPFSALISAGGPSLYKSG 91
           NIT A  G  W  A +TWYG PTGAG    GGACGY   V++ PFS +   G   ++KSG
Sbjct: 8   NIT-ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSG 65

Query: 92  KGCGACYQVKCTHPE-CSGNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQ 150
           +GCG+C+++KCT PE CSG PV V ITD+           HFDLSG AFGAMA  G   +
Sbjct: 66  RGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA---PYHFDLSGHAFGAMAKKGDEQK 122

Query: 151 LRNVGVLQIQHRRVECNYPG 170
           LR+ G L++Q RRV+C YP 
Sbjct: 123 LRSAGELELQFRRVKCKYPE 142

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  127 bits (321), Expect = 4e-38
 Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 3/96 (3%)

Query: 173 IAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGST 232
           + FHV+ GSNPNY A L++Y +GDGD+ +VD+++     D W+ ++ SWGA+W+++    
Sbjct: 3   VTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEK--GKDKWIELKESWGAIWRIDTPDK 60

Query: 233 LRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTYRS 268
           L  PF++R T  E G    A+ VIP GW+   +Y S
Sbjct: 61  LTGPFTVRYT-TEGGTKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  117 bits (296), Expect = 2e-34
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGS 231
           ++ F V+ GSN  + A L++YE        V+L++    SD W+ M +  G VW  +   
Sbjct: 3   KVTFTVEKGSNEKHLAVLVKYEGDTMA--EVELREH--GSDEWVAMTKGEGGVWTFDSEE 58

Query: 232 TLRAPFSLRLTAAESGKALVAKGVIPAGWQPGQTY 266
            L+ PF+ R    E G   V   V+P  +  G TY
Sbjct: 59  PLQGPFNFRFL-TEKGMKNVFDDVVPEKYTIGATY 92

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score = 90.5 bits (224), Expect = 7e-23
 Identities = 33/163 (20%), Positives = 46/163 (28%), Gaps = 47/163 (28%)

Query: 42  SDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAPFSA----LISAGGPSLYKS------G 91
           +  S A  T Y          GACG G A   A F       ++A     + S      G
Sbjct: 12  NGKSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 92  KGCGACYQVKCT--------HPECSGNPVTVVITDECP----------------GGPCVS 127
           + CG C ++  T         P   G   T +IT+ CP                G     
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYG 126

Query: 128 ESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPG 170
             +H DL       +   G           +     V C+   
Sbjct: 127 YELHLDLEN-GRSQVTGMGW-------NNPETTWEVVNCDSEH 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.96
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.96
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.93
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.74
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	93.54

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=4.3e-37  Score=254.68  Aligned_cols=134  Identities=52%  Similarity=1.042  Sum_probs=112.7

Q ss_pred             ccccccccCCCCeeeEEEEEeCCCCCCCC--CcCccCCCCCCCCCCCCCeEEEeCccccCCCCCCCcEEEEEEc-CCCCC
Q 023962           32 LLNITMAESGSDWSPAGATWYGSPTGAGS--DGGACGYGAAVEQAPFSALISAGGPSLYKSGKGCGACYQVKCT-HPECS  108 (274)
Q Consensus        32 ~~~~~~~~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~y~~g~~CG~C~eV~c~-~~~c~  108 (274)
                      +..++ ++|.++|.+|+||||+++++.++  .+|||||++ ++..|++.++||+|..+|++|..||+||||+|. +..|.
T Consensus         6 ~~~~~-a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~-~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~   83 (143)
T d1n10a2           6 GPNIT-ATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACS   83 (143)
T ss_dssp             CSCCC-CBCCCSCEEEEEEEEC----------CCTTCCCC-TTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBC
T ss_pred             CCCcc-cccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCC-cccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCccc
Confidence            33444 57999999999999999876554  379999998 666789999999999999999999999999998 67899


Q ss_pred             CCCEEEEEeecCCCCCCCCCCceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeecCCC
Q 023962          109 GNPVTVVITDECPGGPCVSESVHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECNYPG  170 (274)
Q Consensus       109 ~~sv~V~V~D~Cp~~~C~~~~~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~~~g  170 (274)
                      +++|+|+|||.||+  |. +.+|||||+.||.+|+.++++.++++.|+++|+||+|+|+++|
T Consensus        84 ~~sv~V~vtd~c~~--~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          84 GEPVVVHITDDNEE--PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             SCCEEEEEEEECSS--CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             CCCEEEEEEecccC--CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99999999999996  43 3589999999999999987766777899999999999999987

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.96  E-value=3.5e-31  Score=225.16  Aligned_cols=128  Identities=27%  Similarity=0.417  Sum_probs=103.8

Q ss_pred             CCeeeEEEEEeCCCCCCCCCcCccCCCCCCCCCC----CCCeEEEeCccccCC------CCCCCcEEEEEEc-CC-----
Q 023962           42 SDWSPAGATWYGSPTGAGSDGGACGYGAAVEQAP----FSALISAGGPSLYKS------GKGCGACYQVKCT-HP-----  105 (274)
Q Consensus        42 ~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p----~~~~~aA~s~~~y~~------g~~CG~C~eV~c~-~~-----  105 (274)
                      .+|..+++|||+..+     +|||||+++....+    ++.++||+|+.+|++      |+.||+||||||+ +.     
T Consensus        12 ~g~~~A~aT~Ygd~~-----~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~   86 (180)
T d1wc2a1          12 NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (180)
T ss_dssp             TTEEEEEEEEECCCB-----CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceEEeCCCC-----CCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccC
Confidence            489999999999753     79999999543333    458999999999999      8999999999998 21     


Q ss_pred             -CC-CCCCEEEEEeecCCC-----CCCCCCC-----------ceEEeChhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962          106 -EC-SGNPVTVVITDECPG-----GPCVSES-----------VHFDLSGTAFGAMAISGKADQLRNVGVLQIQHRRVECN  167 (274)
Q Consensus       106 -~c-~~~sv~V~V~D~Cp~-----~~C~~~~-----------~~~DLs~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~  167 (274)
                       .| .+++|+|||||.||.     .||.+++           .||||+ ++|.+|+.       ...|+++|+||+|+|+
T Consensus        87 ~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~-------~~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1          87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTG-------MGWNNPETTWEVVNCD  158 (180)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGG-------GTCSSEEEEEEEECHH
T ss_pred             CCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhh-------hcCCcceeEEEEeeCC
Confidence             12 468999999999995     3996443           499997 59999998       6889999999999999


Q ss_pred             CCCceEEEEEecCCCCce
Q 023962          168 YPGMRIAFHVDSGSNPNY  185 (274)
Q Consensus       168 ~~g~ni~~~vk~GSs~~w  185 (274)
                      ..+ +++++..  ++++|
T Consensus       159 ~~g-~~~~~~~--~n~~~  173 (180)
T d1wc2a1         159 SEH-NHDHRTP--SNSMY  173 (180)
T ss_dssp             HHH-HHCTTSC--CHHHH
T ss_pred             Ccc-ccccccc--CCcch
Confidence            877 5665544  55555

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.96  E-value=8e-29  Score=191.45  Aligned_cols=94  Identities=43%  Similarity=0.977  Sum_probs=89.0

Q ss_pred             eEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEE
Q 023962          172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV  251 (274)
Q Consensus       172 ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv  251 (274)
                      +|.|+|++|||+|||+|+|.|+++.++|.+|||++.+  ++.|++|+|+|||+|+++.+.++++||+||||+ .+|++++
T Consensus         2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~vevk~~g--~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~-~~G~~~v   78 (95)
T d1n10a1           2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKG--KDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT-EGGTKTE   78 (95)
T ss_dssp             CCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETT--CCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE-SSSCEEE
T ss_pred             cEEEEECCCCCcceEEEEEEEcCCCCcEEEEEEEeCC--CCcceEEEECCCCeEEECCCCCCCcCEEEEEEE-cCCCEEE
Confidence            6999999999999999999999999999999999997  678999999999999998765677899999999 9999999


Q ss_pred             EccccCCCCCCCcEEeC
Q 023962          252 AKGVIPAGWQPGQTYRS  268 (274)
Q Consensus       252 ~~~vip~~~~~G~~y~t  268 (274)
                      +.||||++|++|++|++
T Consensus        79 ~~nViP~~W~~G~tY~s   95 (95)
T d1n10a1          79 AEDVIPEGWKADTSYES   95 (95)
T ss_dssp             EEEEECSSCCSSEEEEC
T ss_pred             ECceECCCCCCCCEEeC
Confidence            99999999999999986

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.93  E-value=1.8e-26  Score=177.80  Aligned_cols=91  Identities=34%  Similarity=0.690  Sum_probs=85.2

Q ss_pred             eEEEEEecCCCCceEEEEEEEecCCCCeeEEEEeecCCCCCCcEEccCCCCceEEECCCCCCCCCeEEEEEEccCCeEEE
Q 023962          172 RIAFHVDSGSNPNYFATLIEYEDGDGDLASVDLQQALDSSDSWLPMQRSWGAVWKLNYGSTLRAPFSLRLTAAESGKALV  251 (274)
Q Consensus       172 ni~~~vk~GSs~~w~av~v~n~~~~~~I~sVeI~~~g~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~lRiT~~~~G~~vv  251 (274)
                      .|.|+|++|||+|||+|++.|+++  +|..|||+..+  +++|++|+|+|||+|+++.+.++.+||+||||+ .+|++++
T Consensus         3 ~v~f~v~~GSnp~~lav~v~~~gg--~i~~vev~~~g--s~~W~~M~r~wGa~W~~~~~~~~~gplsfRvt~-~~G~~~v   77 (94)
T d1whoa_           3 KVTFTVEKGSNEKHLAVLVKYEGD--TMAEVELREHG--SDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT-EKGMKNV   77 (94)
T ss_dssp             SEEEEECTTCBTTEEEEEEEETTC--CEEEEEEECTT--CCCCEECEECSTTEEEEECSSCCCSSEEEEEEE-TTSCEEE
T ss_pred             cEEEEECCCCCccEEEEEEEEcCC--CEEEEEEEECC--CCceeECccCcCccEEECCCCCCCccEEEEEEE-cCCCEEE
Confidence            499999999999999999999986  89999999987  678999999999999998765678899999999 9999999


Q ss_pred             EccccCCCCCCCcEEe
Q 023962          252 AKGVIPAGWQPGQTYR  267 (274)
Q Consensus       252 ~~~vip~~~~~G~~y~  267 (274)
                      +.||||++|++|++|+
T Consensus        78 ~~nViP~~W~~G~ty~   93 (94)
T d1whoa_          78 FDDVVPEKYTIGATYA   93 (94)
T ss_dssp             EEEEECSSCCTTCEEC
T ss_pred             EcceECCCCCCCCEEC
Confidence            9999999999999996

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.74  E-value=3.5e-09  Score=81.72  Aligned_cols=65  Identities=28%  Similarity=0.581  Sum_probs=54.2

Q ss_pred             CCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeC-hhhhhhhhccCcccccccCcEEEEEEEEEeec
Q 023962           90 SGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLS-GTAFGAMAISGKADQLRNVGVLQIQHRRVECN  167 (274)
Q Consensus        90 ~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs-~~AF~~la~~~~~~~~~~~G~~~I~w~~V~C~  167 (274)
                      +-..||+|++||.+   -++.+++++|||+|-.       +.|||. +..|++|-.+|++   ...|.+.|+|++|.|.
T Consensus        59 gq~sCGkclrvTN~---atga~~~~RiVDqCsn-------gGlDLD~~~vFn~iDtdG~G---~~~Ghl~V~y~fV~C~  124 (125)
T d1bw3a_          59 GQAACGKCLRVTNP---ATGAQITARIVDQCAN-------GGLDLDWDTVFTKIDTNGIG---YQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             SGGGTTCEEEEEET---TTTEEEEEEEEECCSS-------SSCCSCSSSSHHHHCSSCHH---HHHSEEEEEEEEECCC
T ss_pred             CcccccceEEeeec---ccCcEEEEEEeecccC-------CCCccccHhhhheecCCCcc---cccccEEEEEEEecCC
Confidence            34689999999975   2578999999999754       689999 6799999765544   5789999999999996

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=93.54  E-value=0.02  Score=47.52  Aligned_cols=54  Identities=26%  Similarity=0.292  Sum_probs=35.9

Q ss_pred             eEEEeCccccCCCCCCCcEEEEEEcCCCCCCCCEEEEEeecCCCCCCCCCCceEEeCh
Q 023962           79 LISAGGPSLYKSGKGCGACYQVKCTHPECSGNPVTVVITDECPGGPCVSESVHFDLSG  136 (274)
Q Consensus        79 ~~aA~s~~~y~~g~~CG~C~eV~c~~~~c~~~sv~V~V~D~Cp~~~C~~~~~~~DLs~  136 (274)
                      .+||.+-.-...+..|.+|||++=+...=.+|+.+|+|++.=-+  =  ..+||||..
T Consensus        71 GfAA~~~~g~~e~~~Cc~Cy~LtFTs~~~~GKkMiVQ~tNTGgD--l--g~n~FDl~i  124 (210)
T d2enga_          71 GFAATSIAGSNEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGD--L--GSNHFDLNI  124 (210)
T ss_dssp             EEEEEECTTCCHHHHTTCEEEEEECSGGGTTCEEEEEEEEC---------CCEEEEEC
T ss_pred             eeeeeeecCCCccccccccEEEEeecCCcCCCEEEEEEeccCCc--c--CCCeeeEec
Confidence            35665543334457799999999773333689999999998443  1  258999974