Citrus Sinensis ID: 023966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MKRNPGLRSMISDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEKTAT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccEEEcccccHHHHHHHHHHcEEEcccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccccccccccccccccccHHHccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHHcccEEccccccccccccccccccccHHcccccccEEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
mkrnpglrsmisddkklelrlappspeqdkfpiflghstrnngfhgakRAFEDTLrsqgvagkqegflksSSSVVAEIlypdknafSVAANTAvtngsnkrtapapvvgwppigsfrknlaaggsslskpdtkpdettEERIAAKSESLKTNLFVKINmegvpigrkinlsAYNSYEELSFAIDELFKGLLPVQQDLFAAGcknkmegskidtssvaksdeytllyednegdrmlvgdvpwHMFVSTVKKLLVLKSselstvqtfgvekektat
Flexible Loop (DISEMBL)
mkrnpglrsmisddkklELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAvtngsnkrtapapvvgwppIGSFRKNLaaggsslskpdtkpdettEERIaakseslktnlfvKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNkmegskidtssvaksdeYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLksselstvqtfgvekektat
Low Complexity Region (SEG)
MKRNPGLRSMISDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFvstvkkllvlksselstvQTFGVEKEKTAT
Disordered region (IsUnstruct)
********************************IFL**************************************VVAEILYPDKNAFSVAANTAV************VVGWPPIG***********************************KTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKN***************DEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTV************
Disordered Region (DISOPRED)
******************LRLAPP**********************************************************************************************************************************VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQD***********************DEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVL********************
Disordered Region (DISEMBL)
********SMISDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAA*******************IAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTF*********
Disordered Region (DISPRO)
*************D*KLEL***PPS***************************************************************************RTAPAPVVGWPPIGSFRKNLAAG**************************KTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQD**************IDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRNPGLRSMISDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEKTAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q8LAL2	269	Auxin-responsive protein	yes	no	0.828	0.843	0.446	2e-46
O24408	267	Auxin-responsive protein	no	no	0.788	0.808	0.424	5e-46
Q6H543	300	Auxin-responsive protein	yes	no	0.562	0.513	0.515	5e-40
Q8LQ74	335	Auxin-responsive protein	no	no	0.569	0.465	0.543	3e-39
Q5W670	327	Auxin-responsive protein	no	no	0.839	0.703	0.381	1e-37
P0C127	228	Auxin-responsive protein	no	no	0.620	0.745	0.445	6e-34
Q9XFM0	175	Auxin-responsive protein	no	no	0.594	0.931	0.379	9e-33
Q9LG86	238	Auxin-responsive protein	no	no	0.576	0.663	0.461	5e-30
P0C128	246	Auxin-responsive protein	no	no	0.562	0.626	0.392	3e-28
Q9ZSY8	305	Auxin-responsive protein	no	no	0.857	0.770	0.360	1e-27

>sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 153/262 (58%), Gaps = 35/262 (13%)

Query: 14  DKKLELRLAPP-SPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSS 72
           +KKLELRL PP   E+D   I      +N      K+  ED               KS  
Sbjct: 35  EKKLELRLGPPGGDEEDHSAI----KKKNTEIRNIKKETED---------------KSFH 75

Query: 73  SVVAEILYPDKNAFSVA-ANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSS-LSKP 130
                    + N FS +   T+V + S KRTAP PVVGWPP+ SFRKNLA+  SS L   
Sbjct: 76  CF-------NGNHFSPSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNE 128

Query: 131 DTKPDETTEERIAAKS-ESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKG 189
            +   +  +     K  E+ K  +FVKINM+GVPIGRK++L+AYNSYE+LSF +D+LF+G
Sbjct: 129 SSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRG 188

Query: 190 LLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVK 249
           LL  Q+D+     + K     +D        E+TL YEDNEGD+MLVGDVPW MFVS+VK
Sbjct: 189 LLAAQRDISDGQGEEKPIIGLLDGKG-----EFTLTYEDNEGDKMLVGDVPWQMFVSSVK 243

Query: 250 KLLVLKSSELSTVQTFGVEKEK 271
           +L V+KSSE+S+  TFG  K++
Sbjct: 244 RLRVIKSSEISSALTFGCSKQE 265

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|O24408|IAA18_ARATH Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=1 SV=2

 Score =  184 bits (467), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/271 (42%), Positives = 156/271 (57%), Gaps = 55/271 (20%)

Query: 12  SDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSS 71
           +++KKLEL+L PP  E D                      E  +R      K+E   KS 
Sbjct: 37  TEEKKLELKLGPPGEEDDD---------------------ESMIRHM----KKEPKDKSI 71

Query: 72  SSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPD 131
            S+  +   P        ++T  T  S+KRTAP PVVGWPP+ SFRKNLA+G SS     
Sbjct: 72  LSLAGKYFSP--------SSTKTT--SHKRTAPGPVVGWPPVRSFRKNLASGSSS----K 117

Query: 132 TKPDETTEERIAAKSESL-----------KTNLFVKINMEGVPIGRKINLSAYNSYEELS 180
              D TT   +  K++             +  +FVKINM GVPIGRK++LSA+NSYE+LS
Sbjct: 118 LGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLS 177

Query: 181 FAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVP 240
           F +D+LF+GLL  Q+D  ++     +E  K  T  +  + EYTL YEDNEGD+MLVGDVP
Sbjct: 178 FTVDKLFRGLLAAQRDFPSS-----IEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVP 232

Query: 241 WHMFVSTVKKLLVLKSSELSTVQTFGVEKEK 271
           W MFVS+VK+L V+K+SE+S+  T+G  K++
Sbjct: 233 WQMFVSSVKRLRVIKTSEISSALTYGNGKQE 263

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H543|IAA7_ORYSJ Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 115/161 (71%), Gaps = 7/161 (4%)

Query: 101 RTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINME 160
           R+   PVVGWPP+ +FR+NLA    + SK      E    + AAK+E +K   F+KINM+
Sbjct: 133 RSPSTPVVGWPPVRTFRRNLA----TSSKASL---ELQNGKKAAKAEEIKRAPFIKINMD 185

Query: 161 GVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSD 220
           GVPIGRKI+L+A++SYE+LS A+D+LF+GLL  Q+D   AG K+  +     +  +  + 
Sbjct: 186 GVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTG 245

Query: 221 EYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELST 261
           EYTL+YED EGD++LVGDVPW MFVS+VK+L VLK+S+LS+
Sbjct: 246 EYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSS 286

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LQ74|IAA6_ORYSJ Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 108/160 (67%), Gaps = 4/160 (2%)

Query: 101 RTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINME 160
           R A APVVGWPPI SFR+NLA+  SS   P+ + D       A  + + K N  VKINM+
Sbjct: 170 RGAAAPVVGWPPIRSFRRNLASSSSSKHSPEPQNDNAN----AKVTLTCKKNPLVKINMD 225

Query: 161 GVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSD 220
           G+PIGRKI+L+AYNSY+ LS A+ +LF G L  Q+D   A    +    KI    +  S 
Sbjct: 226 GIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSG 285

Query: 221 EYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELS 260
           EYTL+YED+EGDRMLVGDVPW +FVST K+L VL+SSELS
Sbjct: 286 EYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5W670|IAA18_ORYSJ Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 154/291 (52%), Gaps = 61/291 (20%)

Query: 13  DDKKLELRLAPPSPEQDK---------------------FPIFLGHS--TRNNGFHGAKR 49
           +DK+LEL+L  P  +Q++                        F  HS  T + G  GAKR
Sbjct: 43  EDKELELKLGLPGVQQEERAADSREKIQQQQRESSSEPSIGCFPTHSKPTTSIGTTGAKR 102

Query: 50  AFEDTLRSQGVAGKQEGFLKS---SSSVVAEILYPDKN-------------AFSVAANTA 93
            F        V    EG+ +S   +     E+   D+N               S AA+++
Sbjct: 103 GFFAI-----VGATLEGYNQSHRDTEECGKELTLGDENMAGERKKGCCPSPPCSAAAHSS 157

Query: 94  VTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNL 153
              G   R A  PVVGWPPI SFR+NL  G S    P+ + DE  ++   AK    K  L
Sbjct: 158 NPQG---RGAIPPVVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDK---AKPICKKRPL 211

Query: 154 FVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAA-----GCKNKMEG 208
            VKINM+G+PIGRK++L  Y+SY++LS A++ELF+G L  Q+DL  A     G ++K+  
Sbjct: 212 -VKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFS 270

Query: 209 SKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSEL 259
             +D + V     YTL+YEDN+GDRML GD+PW +FVSTVK+L V++ SEL
Sbjct: 271 GLLDGTGV-----YTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSEL 316

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C127|IAA16_ORYSJ Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 113/191 (59%), Gaps = 21/191 (10%)

Query: 87  SVAANTAVTNGSNKRTAPA-PVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAK 145
           S AA+ A  N   K + PA PVVGWPP+ SFR+NLA+  SS   P    D          
Sbjct: 37  STAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKPPRGGRDAAA------A 90

Query: 146 SESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQD--------- 196
           +   K   FVK+NM+GVPIGRK++L+A+  Y ELS A+D LF+GLL  Q+D         
Sbjct: 91  ATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAA 150

Query: 197 -LFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLK 255
                 C  + E   I       S EYTL+YED+EGD+MLVGDVPW+MF++  ++L VL+
Sbjct: 151 AAAGESCTGEEE--AIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLR 208

Query: 256 SSEL--STVQT 264
           SS+L  ST++ 
Sbjct: 209 SSDLNASTIRA 219

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFM0|IAA28_ARATH Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1

 Score =  140 bits (353), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 124/248 (50%), Gaps = 85/248 (34%)

Query: 11  ISDDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKS 70
           + ++K+LELRLAPP  +           T NN  +G+K         Q  + K+  FL  
Sbjct: 1   MEEEKRLELRLAPPCHQ----------FTSNNNINGSK---------QKSSTKETSFL-- 39

Query: 71  SSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKP 130
                                      SN R   APVVGWPP+ S R+NL A        
Sbjct: 40  ---------------------------SNNRVEVAPVVGWPPVRSSRRNLTA-------- 64

Query: 131 DTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGL 190
                   +E +  K    +  L+VKINMEGVPIGRK+NLSAYN+Y++LS A+D+LF   
Sbjct: 65  ------QLKEEMKKKESDEEKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF--- 115

Query: 191 LPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKK 250
                             SK D+  + +  +YTL+YED EGD++LVGDVPW MFVSTVK+
Sbjct: 116 ------------------SKKDSWDLNR--QYTLVYEDTEGDKVLVGDVPWEMFVSTVKR 155

Query: 251 LLVLKSSE 258
           L VLK+S 
Sbjct: 156 LHVLKTSH 163

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG86|IAA2_ORYSJ Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 104/169 (61%), Gaps = 11/169 (6%)

Query: 110 WPPIGSFRKNLAAGGSSLSKPDTKPDETTEER--IAAKSESLKTNLFVKINMEGVPIGRK 167
           WPP+ SFR+NLA+  SS SK    P  ++ +    A+K    +  +FVKINM+GVPIGRK
Sbjct: 74  WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133

Query: 168 INLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYE 227
           ++L+AY  Y +LS A+D+LF+GLL  Q            E        +    EYTL+YE
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQS------AAADGEADAAAAGEMVGGGEYTLVYE 187

Query: 228 DNEGDRMLVGDVPWHMFVSTVKKLLVLKSSEL---STVQTFGVEKEKTA 273
           D+EGDRMLVGDVPW MF++T K+L VLKSS+L   S ++  G  K   A
Sbjct: 188 DDEGDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRKRAAA 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C128|IAA25_ORYSJ Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 14/168 (8%)

Query: 91  NTAVTNGSNKRTAPAPVVGWPPIGSFRKNL-----AAGGSSLSKPDTKPDETTEERIAAK 145
           N       N+  + A +VGWPP+ +FRKNL     A     ++K     DE    R AA+
Sbjct: 77  NECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQ 136

Query: 146 SESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNK 205
                + +FVK+N+EG  +GRKI+L A+ SY+ LS A+  +F G L           +  
Sbjct: 137 ERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFLSDGIATRDNELQQM 196

Query: 206 MEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLV 253
            EGSK           Y L+YEDNEGDRMLVGDVPW +F+++VK+L +
Sbjct: 197 EEGSK---------KRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 128/258 (49%), Gaps = 23/258 (8%)

Query: 15  KKLELRLAPP---SPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGV------AGKQE 65
           K  ELRL  P   SPE+     FL  +  +    GAKR F D +           +    
Sbjct: 41  KATELRLGLPGSESPERVD-SRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTTAT 99

Query: 66  GFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAP---VVGWPPIGSFRKNLAA 122
           G + S S     ++   K+         V    +  TAPA    VVGWPPI SFRKN  A
Sbjct: 100 GDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMA 159

Query: 123 GGSSLSKPDTKPDETTE-ERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSF 181
              S      KP   +E E   AKS   +  L+VK++MEG P  RKI+L  Y SY ELS 
Sbjct: 160 SSQS-----QKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSS 214

Query: 182 AIDELFKGLLPVQQDLFAAGC-KNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVP 240
           A++++F     + Q     GC ++ +  S++  + + +  EY + YED + D MLVGDVP
Sbjct: 215 ALEKMFS-CFTIGQFGSHGGCGRDGLNESRL--TDLLRGSEYVVTYEDKDSDWMLVGDVP 271

Query: 241 WHMFVSTVKKLLVLKSSE 258
           W MF+ + KKL ++KSSE
Sbjct: 272 WEMFICSCKKLRIMKSSE 289

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
297743183	364	unnamed protein product [Vitis vinifera]	0.908	0.684	0.480	2e-55
356556539	320	PREDICTED: auxin-responsive protein IAA2	0.967	0.828	0.501	1e-54
225429365	345	PREDICTED: auxin-responsive protein IAA6	0.952	0.756	0.469	3e-54
357454777	269	Auxin-responsive protein IAA18 [Medicago	0.894	0.910	0.481	1e-52
359482888	364	PREDICTED: auxin-responsive protein IAA2	0.715	0.538	0.579	1e-52
224070983	338	predicted protein [Populus trichocarpa]	0.711	0.576	0.570	3e-52
365818553	287	IAA26 [Solanum lycopersicum]	0.937	0.895	0.472	3e-52
255549816	320	Auxin-responsive protein IAA6, putative	0.872	0.746	0.482	1e-51
449466107	326	PREDICTED: auxin-responsive protein IAA2	0.948	0.797	0.435	5e-51
302398571	325	ARF domain class transcription factor [M	0.883	0.744	0.471	9e-50

>gi|297743183|emb|CBI36050.3| unnamed protein product [Vitis vinifera]

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/289 (48%), Positives = 178/289 (61%), Gaps = 40/289 (13%)

Query: 13  DDKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGKQ-------- 64
           ++KKLELRL PP  +       +  +T NN +    R  +++LR+ G  G Q        
Sbjct: 81  EEKKLELRLGPPGEDWT-----IKDNTNNNNY----RERDESLRNTGEEGYQVKTQQQQQ 131

Query: 65  ---EGFLKSSSS--------------VVAEILYPDKNAFSVA-ANTAVTNGSNKRTAPAP 106
                FL+  SS               V ++   +K AFS A ANTAV N S KR+AP  
Sbjct: 132 QTKASFLQFQSSPPVITKESSQPCCTKVVDLQNTEKKAFSPASANTAVPNSSQKRSAPTA 191

Query: 107 VVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKS--ESLKTNLFVKINMEGVPI 164
           VVGWPPI SFRKNLA+  SS SKP  +  +    +IA++   E  K  LFVKINM+GVPI
Sbjct: 192 VVGWPPIRSFRKNLAS--SSSSKPANESQDVVPNKIASEKPVEVGKKGLFVKINMDGVPI 249

Query: 165 GRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTL 224
           GRK++L+AY+SYE+LS A+DELF+GLL  Q+D  A G + K E  K  T  +  S EYTL
Sbjct: 250 GRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKHEEEKTITGLLDGSGEYTL 309

Query: 225 LYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEKTA 273
           +YEDNEGDR+LVGDVPWHMFV+TVK+L VLKSSELS +   G  K++ A
Sbjct: 310 VYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSAL-CLGSSKQEKA 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556539|ref|XP_003546582.1| PREDICTED: auxin-responsive protein IAA26-like [Glycine max]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/291 (50%), Positives = 180/291 (61%), Gaps = 26/291 (8%)

Query: 2   KRNPGLRSMISDDKKLELRLAPP-----------SPEQDKFPIFLGHSTRNNGFHGAKRA 50
           KRN G     S+++KLELRL PP           + E+++  + LG  + NNGF      
Sbjct: 27  KRNEG---KSSEERKLELRLGPPGEDWSLGGKMKNTEREESLLSLGCFSPNNGFQSKASP 83

Query: 51  FED-TLRSQGVAGK--QEGFLKSSSSVVAEILYPDKNAFS-VAANTAVT--NGSNKRTAP 104
           + +     QG   K     FL+    VV      D   FS  +ANTAV+  N S KRTAP
Sbjct: 84  WPNYHHHHQGNNNKASSSSFLQCPKVVVELQNGGDGKVFSPSSANTAVSQPNTSQKRTAP 143

Query: 105 APVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKS--ESLKTN--LFVKINME 160
           APVVGWPPI SFRKNLA+  SS SKP  +       ++A K   ++   N  LFVKINM+
Sbjct: 144 APVVGWPPIRSFRKNLASS-SSASKPPPESQAEQHNKVAGKKPVDNYANNKGLFVKINMD 202

Query: 161 GVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSD 220
           GVPIGRK++L+AY+SYE LS A+DELF+GLL  Q+D  A G  NK E  K  T  +  S 
Sbjct: 203 GVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSG 262

Query: 221 EYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEK 271
           EYTL+YEDNEGDRMLVGDVPWHMFVSTVK+L VLKSSELS   T G +++K
Sbjct: 263 EYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAF-TLGSKQDK 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429365|ref|XP_002277798.1| PREDICTED: auxin-responsive protein IAA6-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 147/313 (46%), Positives = 179/313 (57%), Gaps = 52/313 (16%)

Query: 8   RSMISDDKKLELRLAPPSPEQDKFPIF-------LGHSTRNNGFHGAKRAFEDTLRSQ-- 58
           R  +S+DKKLELRL PP  ++    +        + H   N+  HGAKR F+DTL ++  
Sbjct: 25  RHGVSEDKKLELRLGPPGEDRSLLSLSYLPSMASITHLHTNS--HGAKRGFQDTLEAKPW 82

Query: 59  ---------GVAGKQEGFLKSSS---SVVAEIL---------------------YPDKNA 85
                        KQ    KSS     VV + L                     Y DK A
Sbjct: 83  PRVSLSSSSSAFEKQNHQPKSSYLQYPVVPQTLGAIVDESSKPRPTSMADQAQQYKDKMA 142

Query: 86  FSVAA------NTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTE 139
            SVAA      NTAV N S KR   APVVGWPPI SFRKNL    SS       P++  E
Sbjct: 143 CSVAADASVSANTAVPNSSQKRIEHAPVVGWPPIRSFRKNLV-NSSSSKPESESPNKIPE 201

Query: 140 ERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFA 199
           E    KSES KT LFVKINM+GVPIGRK++L A +SYE+LS+A+D+LF+GLL  Q +  A
Sbjct: 202 ETGYGKSESSKTGLFVKINMDGVPIGRKVDLKACDSYEKLSYAVDDLFRGLLSAQNESSA 261

Query: 200 A-GCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSE 258
             G +NKME +K        S EYTL+YEDNEGDRMLVGDVPWHMFVSTV++L VLKSSE
Sbjct: 262 GTGNENKMEEAKTMAGLFDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVRRLRVLKSSE 321

Query: 259 LSTVQTFGVEKEK 271
           L+ +     ++EK
Sbjct: 322 LAILCVSSSKQEK 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454777|ref|XP_003597669.1| Auxin-responsive protein IAA18 [Medicago truncatula] gi|355486717|gb|AES67920.1| Auxin-responsive protein IAA18 [Medicago truncatula]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/276 (48%), Positives = 169/276 (61%), Gaps = 31/276 (11%)

Query: 12  SDDKKLELRLAPPSPE-----QDKFPIFLGH--STRNNGFHGAKRAFEDTLRSQGVAGKQ 64
           S+++KLELRL PP  E      +K  I  G+  S+ NNGF    R  +++  SQ    K+
Sbjct: 12  SEERKLELRLGPPGVEDWFHTHNKQRISFGNYFSSSNNGFQHV-RGNKESSSSQTCCPKR 70

Query: 65  EGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGG 124
                       E+   D N       TAV+N S KRTAP PVVGWPPI SFRKNLA   
Sbjct: 71  -----------VELQNGDNNKV-----TAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSS 114

Query: 125 SSLSKPDT-KPDETTEERIAAKSESLKTN----LFVKINMEGVPIGRKINLSAYNSYEEL 179
           SS   P   +  +     ++A  + +  N    LFVKINM+GVPIGRK++L+AY+SY+ L
Sbjct: 115 SSKPSPPESQTQQDMHNNVSAGKKPIDNNYGKGLFVKINMDGVPIGRKVDLNAYHSYDNL 174

Query: 180 SFAIDELFKGLLPVQQDLFAAGCKNKMEGS-KIDTSSVAKSDEYTLLYEDNEGDRMLVGD 238
           S A+D+LF+GLL  Q+D  A G  NK E   K+ T  +  S EYTL+YEDNEGDRMLVGD
Sbjct: 175 SSAVDDLFRGLLKAQRDSSACGGNNKKEEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGD 234

Query: 239 VPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEKTAT 274
           VPWHMFVSTVK+L VLKS+ELS   T G  ++K +T
Sbjct: 235 VPWHMFVSTVKRLRVLKSTELSAF-TLGTRQDKIST 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482888|ref|XP_002283588.2| PREDICTED: auxin-responsive protein IAA26-like [Vitis vinifera]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 145/202 (71%), Gaps = 6/202 (2%)

Query: 75  VAEILYPDKNAFSVA-ANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTK 133
           V ++   +K AFS A ANTAV N S KR+AP  VVGWPPI SFRKNLA+  SS SKP  +
Sbjct: 159 VVDLQNTEKKAFSPASANTAVPNSSQKRSAPTAVVGWPPIRSFRKNLAS--SSSSKPANE 216

Query: 134 PDETTEERIAAKS--ESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLL 191
             +    +IA++   E  K  LFVKINM+GVPIGRK++L+AY+SYE+LS A+DELF+GLL
Sbjct: 217 SQDVVPNKIASEKPVEVGKKGLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLL 276

Query: 192 PVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKL 251
             Q+D  A G + K E  K  T  +  S EYTL+YEDNEGDR+LVGDVPWHMFV+TVK+L
Sbjct: 277 AAQRDSSAGGIQTKHEEEKTITGLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRL 336

Query: 252 LVLKSSELSTVQTFGVEKEKTA 273
            VLKSSELS +   G  K++ A
Sbjct: 337 RVLKSSELSAL-CLGSSKQEKA 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070983|ref|XP_002303315.1| predicted protein [Populus trichocarpa] gi|222840747|gb|EEE78294.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 135/205 (65%), Gaps = 10/205 (4%)

Query: 70  SSSSVVAEI-LYPDKNAFSVAA--NTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSS 126
             + VV E+    +K AFS  A  NTAV N S KR AP PVVGWPPI SFRKNLA    S
Sbjct: 138 CCTKVVVELPQCAEKKAFSTPAPANTAVPNSSQKRIAPGPVVGWPPIRSFRKNLATSSGS 197

Query: 127 LSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDEL 186
            SKP       T E     + + K  LFVKINMEGVPIGRK++L AY+SYE+LS A+DEL
Sbjct: 198 NSKP-------TFESQNKPAGTCKKGLFVKINMEGVPIGRKVDLKAYDSYEKLSTAVDEL 250

Query: 187 FKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVS 246
           F+GLL  Q+D    G  NK EG K     +  S EY L+YEDNEGDRMLVGDVPWHMFVS
Sbjct: 251 FRGLLAAQRDSSCNGIMNKQEGEKAIMGVLDGSGEYKLVYEDNEGDRMLVGDVPWHMFVS 310

Query: 247 TVKKLLVLKSSELSTVQTFGVEKEK 271
           TVK+L VLKSSE+S +     + EK
Sbjct: 311 TVKRLRVLKSSEVSALNLGSSKHEK 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818553|gb|AEX00365.1| IAA26 [Solanum lycopersicum]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/275 (47%), Positives = 169/275 (61%), Gaps = 18/275 (6%)

Query: 1   MKRNPGLRSMISDDKKLELRLAPPSP-----EQDK--FPIFLGHSTRNNGFHGAKRAFED 53
           M+R   +    S++KKLELRL PP+      E+D+  +P     +T+ N      + F  
Sbjct: 10  MQRGEEINHGNSEEKKLELRLGPPNGDWSCGEKDESFYPFSYMSTTKGNNRDNHAQNFSS 69

Query: 54  TLRSQGVAGKQEGFLKSSSSVVAEILYP--DKNAFSVAANTAVTNGSNKRTAPAPVVGWP 111
            L+ Q  A KQ   ++ S       L     K AFS  A   V N + KRTAPAPVVGWP
Sbjct: 70  FLQLQSTAQKQSQRVQESVCTKTADLQSTEKKKAFSQTA--TVQNSAQKRTAPAPVVGWP 127

Query: 112 PIGSFRKNLAAGGSSLSKPDTK---PDETTEERIAAKSESLKTNLFVKINMEGVPIGRKI 168
           PI SFRKNLA+  S  S  +T+   P+++  ++     E  +  LFVKINM+G+PIGRK+
Sbjct: 128 PIRSFRKNLASSSSVKSASETQNVVPNKSANKKPM---EICQKGLFVKINMDGIPIGRKV 184

Query: 169 NLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAK-SDEYTLLYE 227
           +L AY+SY +LS A+D+LF+GL+  Q D  A G   K E  +   S +   S EYTL+YE
Sbjct: 185 DLKAYDSYHKLSSAVDQLFRGLVAAQNDSSAGGNNEKKEDEEKAISGLLDGSGEYTLVYE 244

Query: 228 DNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTV 262
           DNEGDRMLVGDVPWHMFVSTVK+L VLKSSELST+
Sbjct: 245 DNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSTL 279

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549816|ref|XP_002515959.1| Auxin-responsive protein IAA6, putative [Ricinus communis] gi|223544864|gb|EEF46379.1| Auxin-responsive protein IAA6, putative [Ricinus communis]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/288 (48%), Positives = 171/288 (59%), Gaps = 49/288 (17%)

Query: 15  KKLELRLAPPSPEQDKFPIFLGHSTRNNGFH----------GAKRAFEDTLRSQGVAGKQ 64
           KKLELRLAPP  E       L  ST+N   +          GA   F   L  QG A   
Sbjct: 39  KKLELRLAPPGQEWS-----LNDSTKNADINRERDESLLSLGASGWFNQQLSQQGKATTT 93

Query: 65  E--GFLK-------------------SSSSVVAEILY-----PDKNAFS--VAANTAVTN 96
               FL+                   SS     +++       +K AFS    ANTAV N
Sbjct: 94  TTPSFLQFPSKTVTTNAQNLPVMAKESSQPCCTKVVVDLQQSAEKKAFSQPAPANTAVPN 153

Query: 97  GSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKS--ESLKTNLF 154
            S KRTAP PVVGWPPI SFRKNLA+  SS S  D++ +E+  +++A+++  E+ K  LF
Sbjct: 154 ISQKRTAPGPVVGWPPIRSFRKNLASSNSSKSAADSQ-NESPNKKVASENPVETCKKGLF 212

Query: 155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTS 214
           VKINM+GVPIGRK++L AY+SYE+LS A+DELF+GLL  Q+D  A     K E  K  T 
Sbjct: 213 VKINMDGVPIGRKVDLQAYDSYEKLSIAVDELFRGLLAAQRDSSAG---TKQEEEKAITG 269

Query: 215 SVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTV 262
            +  S EYTL+YEDNEGDRMLVGDVPWHMFVSTVK+L VLKSSE+S +
Sbjct: 270 VLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEVSAL 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466107|ref|XP_004150768.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus] gi|449490048|ref|XP_004158493.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/287 (43%), Positives = 167/287 (58%), Gaps = 27/287 (9%)

Query: 8   RSMISDDKKLELRLAPPS-------------PEQDKFPIFLGHSTRNNGFHGAKRAFEDT 54
           ++  SDDKKLELRL  P              P    FP+    +   N +      F   
Sbjct: 35  KANTSDDKKLELRLGLPGEGDWSGKGRDDSVPSFGYFPVSRKFTPSENPWP-PHPNFLGK 93

Query: 55  LRSQGVAG------KQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVV 108
           L+   ++G       +EG  +   + + ++   +   F  + N AV+N S KRTAPAPVV
Sbjct: 94  LQPTKISGFCLSAMGKEGVSQPCCTKMGDLHNAEAKPFPSSVNIAVSNSSQKRTAPAPVV 153

Query: 109 GWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESL----KTNLFVKINMEGVPI 164
           GWPPI S R+N+A+  SS SKP ++  + +  ++    E         LFVKINM+GVPI
Sbjct: 154 GWPPIRSSRRNIAS--SSFSKPASESSDASPSKLPGPGEKPVDVGGKGLFVKINMDGVPI 211

Query: 165 GRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTL 224
           GRKI+L+AY+SYE+LSF +DELF+GLL  Q+D    G  NK E  K  T  +  S EYTL
Sbjct: 212 GRKIDLNAYDSYEKLSFGVDELFRGLLAAQRDSSGGGVLNKQEEEKPITGLLDGSGEYTL 271

Query: 225 LYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQTFGVEKEK 271
           +YEDNEGDR+LVGDVPW MFVST K+L VLKSSEL ++ + G  K +
Sbjct: 272 VYEDNEGDRVLVGDVPWQMFVSTAKRLRVLKSSELPSL-SLGCSKSQ 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398571|gb|ADL36580.1| ARF domain class transcription factor [Malus x domestica]

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 131/278 (47%), Positives = 170/278 (61%), Gaps = 36/278 (12%)

Query: 13  DDKKLELRLAPPSP---------EQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVAGK 63
           ++KKLELRL PP           E+ +  + LG+ +     +  ++      +   VA  
Sbjct: 47  EEKKLELRLGPPGQDWSMKRERDEKSQSLVSLGYFSSPMSSNQTQKFISSYQQQTKVAS- 105

Query: 64  QEGFL-------KSS---SSVVAEILYPDKNAFSVA-ANTAVT-NGSNKRTAPAPVVGWP 111
              FL       K+S    +   ++   +   FS A ANTAV  N S KRTAPAPVVGWP
Sbjct: 106 ---FLHLPVTPNKASQPWCTKAVDLQNAENKGFSPAPANTAVLPNTSQKRTAPAPVVGWP 162

Query: 112 PIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKS---ESLKTN---LFVKINMEGVPIG 165
           PI SFRKNLA+      K  +KP   +E  +  K    +S++T+   LFVKINM+GVPIG
Sbjct: 163 PIRSFRKNLAS-----KKGSSKPAVESENVVQIKDPNGKSVETSGKGLFVKINMDGVPIG 217

Query: 166 RKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLL 225
           RK++L AY+SY++LS A+DELF+GLL  Q++    G KNK E  K  T  +  S EYTL+
Sbjct: 218 RKVDLGAYDSYQKLSSAVDELFRGLLAAQRESCNGGTKNKQEEEKEITGLLDGSGEYTLV 277

Query: 226 YEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSELSTVQ 263
           YEDNEGDRMLVGDVPWHMFVSTVK+L VLKSSELS ++
Sbjct: 278 YEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSALR 315

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2088324	269	PAP1 "phytochrome-associated p	0.667	0.680	0.460	3.2e-41
TAIR|locus:2195820	267	IAA18 "indole-3-acetic acid in	0.828	0.850	0.413	1.5e-37
UNIPROTKB|Q8LQ74	335	IAA6 "Auxin-responsive protein	0.857	0.701	0.392	1.9e-35
UNIPROTKB|Q5W670	327	IAA18 "Auxin-responsive protei	0.543	0.455	0.470	3.4e-34
UNIPROTKB|Q6H543	300	IAA7 "Auxin-responsive protein	0.635	0.58	0.439	1.4e-32
UNIPROTKB|Q9LG86	238	IAA2 "Auxin-responsive protein	0.624	0.718	0.455	1.4e-32
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.277	0.434	0.544	2e-32
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.810	0.727	0.362	3.6e-25
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.813	0.659	0.297	5.5e-22
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.656	0.762	0.342	4.9e-21

TAIR|locus:2088324 PAP1 "phytochrome-associated protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 88/191 (46%), Positives = 114/191 (59%)

Query:    84 NAFSVA-ANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSS-LSKPDTKPDETTEER 141
             N FS +   T+V + S KRTAP PVVGWPP+ SFRKNLA+  SS L    +   +  +  
Sbjct:    80 NHFSPSNKTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSD 139

Query:   142 IAAKS-ESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAA 200
                K  E+ K  +FVKINM+GVPIGRK++L+AYNSYE+LSF +D+LF+GLL  Q+D+   
Sbjct:   140 DGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDG 199

Query:   201 GCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFXXXXXXXXXXXXXXXX 260
               + K     +D        E+TL YEDNEGD+MLVGDVPW MF                
Sbjct:   200 QGEEKPIIGLLDGKG-----EFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEIS 254

Query:   261 XXQTFGVEKEK 271
                TFG  K++
Sbjct:   255 SALTFGCSKQE 265

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:2195820 IAA18 "indole-3-acetic acid inducible 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 101/244 (41%), Positives = 133/244 (54%)

Query:    37 HSTRNNGFHGAKRAFEDTLRSQGVAGKQEGFLKSSSSVVAE--ILYPDKNAFSVAANTAV 94
             H  +N+ F   ++  E  L   G     E  ++       +  IL      FS  ++T  
Sbjct:    28 HDEKNSVFKTEEKKLELKLGPPGEEDDDESMIRHMKKEPKDKSILSLAGKYFS-PSSTKT 86

Query:    95 TNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSS-LSKPDTKPDETTEER----IAAKSESL 149
             T  S+KRTAP PVVGWPP+ SFRKNLA+G SS L    T  +  T +      AAK+   
Sbjct:    87 T--SHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEP 144

Query:   150 KTN--LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKME 207
             K    +FVKINM GVPIGRK++LSA+NSYE+LSF +D+LF+GLL  Q+D       + +E
Sbjct:   145 KRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDF-----PSSIE 199

Query:   208 GSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFXXXXXXXXXXXXXXXXXXQTFGV 267
               K  T  +  + EYTL YEDNEGD+MLVGDVPW MF                   T+G 
Sbjct:   200 DEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEISSALTYGN 259

Query:   268 EKEK 271
              K++
Sbjct:   260 GKQE 263

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q8LQ74 IAA6 "Auxin-responsive protein IAA6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 357 (130.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 102/260 (39%), Positives = 132/260 (50%)

Query:     6 GLRSMISDDKKLELR---LAPPSPEQDK--FPIFLGHSTRNNGFHGAKRAFEDTL--RSQ 58
             GL   I DD+   LR   L   SP      FP     ++      GAKR F DT+  +++
Sbjct:    54 GLPGFIEDDEAETLRDYRLQQESPSLSLSFFPKHSKTTSSTTTTTGAKRGFIDTVEDKTE 113

Query:    59 GV----------AGKQ---EGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNK-RTAP 104
             G            GK+   E  + + S        P        A  A      + R A 
Sbjct:   114 GYNDQKQQARAGCGKELAVEEMIAAVSERKKGCCPPPPPPHGAPATPARNRPQTQGRGAA 173

Query:   105 APVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPI 164
             APVVGWPPI SFR+NLA+  SS   P+ + D       A  + + K N  VKINM+G+PI
Sbjct:   174 APVVGWPPIRSFRRNLASSSSSKHSPEPQNDNAN----AKVTLTCKKNPLVKINMDGIPI 229

Query:   165 GRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTL 224
             GRKI+L+AYNSY+ LS A+ +LF G L  Q+D   A    +    KI    +  S EYTL
Sbjct:   230 GRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGEYTL 289

Query:   225 LYEDNEGDRMLVGDVPWHMF 244
             +YED+EGDRMLVGDVPW +F
Sbjct:   290 VYEDSEGDRMLVGDVPWKVF 309

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5W670 IAA18 "Auxin-responsive protein IAA18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 340 (124.7 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 73/155 (47%), Positives = 99/155 (63%)

Query:    92 TAVTNGSNK--RTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESL 149
             +A  + SN   R A  PVVGWPPI SFR+NL  G S    P+ + DE  ++   AK    
Sbjct:   151 SAAAHSSNPQGRGAIPPVVGWPPIRSFRRNLTNGSSFKQSPERQNDEADDK---AKPICK 207

Query:   150 KTNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGS 209
             K  L VKINM+G+PIGRK++L  Y+SY++LS A++ELF+G L  Q+DL  A    +    
Sbjct:   208 KRPL-VKINMDGIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAED 266

Query:   210 KIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMF 244
             KI +  +  +  YTL+YEDN+GDRML GD+PW +F
Sbjct:   267 KIFSGLLDGTGVYTLVYEDNDGDRMLAGDIPWKVF 301

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q6H543 IAA7 "Auxin-responsive protein IAA7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 83/189 (43%), Positives = 117/189 (61%)

Query:    57 SQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPA-PVVGWPPIGS 115
             SQG A K +G  +   +       P     ++A+N    NG  +  +P+ PVVGWPP+ +
Sbjct:    95 SQGKANKNKGSPEEEEAHPP----PATGNNALASNN---NGCFQTRSPSTPVVGWPPVRT 147

Query:   116 FRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNS 175
             FR+NLA      SK      E    + AAK+E +K   F+KINM+GVPIGRKI+L+A++S
Sbjct:   148 FRRNLATS----SKASL---ELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDS 200

Query:   176 YEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRML 235
             YE+LS A+D+LF+GLL  Q+D   AG K+  +     +  +  + EYTL+YED EGD++L
Sbjct:   201 YEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVL 260

Query:   236 VGDVPWHMF 244
             VGDVPW MF
Sbjct:   261 VGDVPWGMF 269

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q9LG86 IAA2 "Auxin-responsive protein IAA2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 82/180 (45%), Positives = 108/180 (60%)

Query:    67 FLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSS 126
             F  SSSS  +E       AF++ +N    +  +   A APVVGWPP+ SFR+NLA+  SS
Sbjct:    32 FSSSSSSKPSEGSTAAP-AFALRSNGTNASKPSGAAAAAPVVGWPPVRSFRRNLASSSSS 90

Query:   127 LSKPDTKPDETTEER--IAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFAID 184
              SK    P  ++ +    A+K    +  +FVKINM+GVPIGRK++L+AY  Y +LS A+D
Sbjct:    91 SSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRKVDLAAYGGYAQLSAAVD 150

Query:   185 ELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMF 244
             +LF+GLL  Q    A G     E        +    EYTL+YED+EGDRMLVGDVPW MF
Sbjct:   151 KLFRGLLAAQSAA-ADG-----EADAAAAGEMVGGGEYTLVYEDDEGDRMLVGDVPWQMF 204

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
 Identities = 49/90 (54%), Positives = 61/90 (67%)

Query:    98 SNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKI 157
             SN R   APVVGWPP+ S R+NL A    L K + K  E+ EE+           L+VKI
Sbjct:    40 SNNRVEVAPVVGWPPVRSSRRNLTA---QL-KEEMKKKESDEEK----------ELYVKI 85

Query:   158 NMEGVPIGRKINLSAYNSYEELSFAIDELF 187
             NMEGVPIGRK+NLSAYN+Y++LS A+D+LF
Sbjct:    86 NMEGVPIGRKVNLSAYNNYQQLSHAVDQLF 115

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 88/243 (36%), Positives = 118/243 (48%)

Query:    15 KKLELRLAPP---SPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGV----AGKQE-- 65
             K  ELRL  P   SPE+     FL  +  +    GAKR F D +          G     
Sbjct:    41 KATELRLGLPGSESPERVDSR-FLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTTAT 99

Query:    66 GFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAPAP---VVGWPPIGSFRKNLAA 122
             G + S S     ++   K+         V    +  TAPA    VVGWPPI SFRKN  A
Sbjct:   100 GDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMA 159

Query:   123 GGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSAYNSYEELSFA 182
                S  KP    +  TEE   AKS   +  L+VK++MEG P  RKI+L  Y SY ELS A
Sbjct:   160 SSQS-QKPGNNSE--TEEA-EAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSA 215

Query:   183 IDELFKGLLPVQQDLFAAGC-KNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPW 241
             ++++F     + Q     GC ++ +  S++  + + +  EY + YED + D MLVGDVPW
Sbjct:   216 LEKMFS-CFTIGQFGSHGGCGRDGLNESRL--TDLLRGSEYVVTYEDKDSDWMLVGDVPW 272

Query:   242 HMF 244
              MF
Sbjct:   273 EMF 275

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 75/252 (29%), Positives = 119/252 (47%)

Query:     6 GLRSMISDDKKLELRLAPPSPEQDK--FPIF-----LGHSTRNNGFHGAKRAFEDTL--- 55
             GL    S  +  EL L  P+   +K  FP+      +  S++ N   G KR F DT+   
Sbjct:    71 GLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQF 130

Query:    56 -RSQGVAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKR-TAPAPVVGWPPI 113
               ++     ++ ++   ++    +   D         ++ TN S+    A A +VGWPP+
Sbjct:   131 AEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAAKAQIVGWPPV 190

Query:   114 GSFRKN-LAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSA 172
              S+RKN LA    +  + D +P                  LFVK++M+G P  RK++L +
Sbjct:   191 RSYRKNTLATTCKNSDEVDGRPGSGA--------------LFVKVSMDGAPYLRKVDLRS 236

Query:   173 YNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD 232
             Y +Y ELS A++++F      Q     A  K+ +  +K+    +    +Y L YED +GD
Sbjct:   237 YTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKL--KDLLNGKDYVLTYEDKDGD 294

Query:   233 RMLVGDVPWHMF 244
              MLVGDVPW MF
Sbjct:   295 WMLVGDVPWEMF 306

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 65/190 (34%), Positives = 94/190 (49%)

Query:    60 VAGKQEGFLKSSSSVVAEILYPDKNAFSVAANTAVTNGSNKRTAP---APVVGWPPIGSF 116
             +AGK  G  +  S  V   L     A    +   + N   K   P   A VVGWPP+ SF
Sbjct:    22 MAGKNNG-KRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPVRSF 80

Query:   117 RKNLAAGGSSLSKPDTKPDETTEERIAAKSES--LKTNLFVKINMEGVPIGRKINLSAYN 174
             RKN+ +G    +   T+ ++ T     A S +    T  +VK++M+G P  RKI+L  Y 
Sbjct:    81 RKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYK 140

Query:   175 SYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM 234
             +Y++LS A+ ++F        +    G K+ M  SK+    +    +Y   YED +GD M
Sbjct:   141 TYQDLSNALSKMFSSF--TIGNYGPQGMKDFMNESKL--IDLLNGSDYVPTYEDKDGDWM 196

Query:   235 LVGDVPWHMF 244
             LVGDVPW MF
Sbjct:   197 LVGDVPWEMF 206

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LAL2	IAA26_ARATH	No assigned EC number	0.4465	0.8284	0.8438	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034294001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (376 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	1e-43

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  146 bits (370), Expect = 1e-43
 Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 52/220 (23%)

Query: 50  AFEDTLRSQGVAGKQEGFLKSSSSVV-------AEILYPDKNAFSVAANTAVTNGSNKRT 102
             + T    G+ G  E   + S+S V       +E+     ++      + ++  SN  +
Sbjct: 2   NLKATELRLGLPGGSEPESEPSTSSVTSNKRGFSEVTEDGISSSLGEDKSTISVSSNGDS 61

Query: 103 APAP----VVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKIN 158
           A  P    VVGWPP+ S+RKN                              K+  +VK++
Sbjct: 62  AKPPAKAQVVGWPPVRSYRKNSLREK-------------------------KSGSYVKVS 96

Query: 159 MEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAK 218
           M+G P  RK++L  Y SY+ELS A++++F          F  G    ++           
Sbjct: 97  MDGAPYLRKVDLKMYKSYDELSSALEKMFSC--------FTIGESGLLDLLN-------- 140

Query: 219 SDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLLVLKSSE 258
             EY   YED +GD MLVGDVPW MFV + K+L ++K SE
Sbjct: 141 GSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSE 180

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.29
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.12
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.05
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	96.89
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.81
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.68
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.57
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.47
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.37
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.3
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.99
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.15
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	85.96

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=2.3e-62  Score=434.88  Aligned_cols=212  Identities=38%  Similarity=0.564  Sum_probs=6.0

Q ss_pred             cccceeecCCCCCCCCCccccccccccCCCccccccccchhhhccccc-ccccCcccCcchhhhhhccCCCCCccccccc
Q 023966           14 DKKLELRLAPPSPEQDKFPIFLGHSTRNNGFHGAKRAFEDTLRSQGVA-GKQEGFLKSSSSVVAEILYPDKNAFSVAANT   92 (274)
Q Consensus        14 ~kklELrLGpPG~~~~~~~~~~~~~~~~~~~~~akr~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (274)
                      -|+|||||||||.+++.   ....-......++.||+|+++|..+... +.............. .    ...   ....
T Consensus         3 ~~~TELrLGLPG~~~~~---~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~   71 (215)
T PF02309_consen    3 LKATELRLGLPGSESPD---ASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSS-S----SST---SSSS   71 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             chhhhhcccCCCCCCCC---cccccccccccCcccccchhhhhhcccccccccccccccCcccc-c----ccc---cccc
Confidence            47899999999987543   0111123456888899999998866522 111111111100000 0    000   0011


Q ss_pred             cccCCCCCCCCCCCccccCCccchhcccccCCCCCCCCCCCCCcchHHHHHhhhcccCCccceEEEecCcccceeeccCC
Q 023966           93 AVTNGSNKRTAPAPVVGWPPIGSFRKNLAAGGSSLSKPDTKPDETTEERIAAKSESLKTNLFVKINMEGVPIGRKINLSA  172 (274)
Q Consensus        93 ~~~~~~~~r~a~~qVVGWPPVrs~RkN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VKV~MdG~pIGRKVDL~~  172 (274)
                      ...+....+.+++++|||||||+||+|++...                      .....++||||+|||+||||||||++
T Consensus        72 ~~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~----------------------~~~~~~~~vKV~mdG~~igRkVDL~~  129 (215)
T PF02309_consen   72 SDSSSSSPPASKAQVVGWPPVRSFRKNSLSEK----------------------QSSSSRSYVKVNMDGVPIGRKVDLSA  129 (215)
T ss_dssp             --------------BTTBS----S--------------------------------------------------------
T ss_pred             cccccCCCCcccccccCCCccccccccccccc----------------------ccccCCceeEEEecCcccceecCHHH
Confidence            11111223446789999999999999988732                      01123689999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeEEccCcChhHHhhcceEEE
Q 023966          173 YNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVGDVPWHMFVSTVKKLL  252 (274)
Q Consensus       173 ~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwMLVGDVPW~mFv~svKRLr  252 (274)
                      |+||++|+.+|++||.+|.+.++++.       ...+....++++++ +|+|||||+||||||||||||+|||++|||||
T Consensus       130 ~~sY~~L~~~L~~MF~~~~i~~~~~~-------~~~~~~~~~~~~~~-~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~  201 (215)
T PF02309_consen  130 YSSYEELSSALEKMFSCFSIEQCGSH-------GLNESGLLDLLNGS-EYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLR  201 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhCHHHHHHHHHHhcCCCCccccccc-------cccchhhccccCCc-ceeEEEECCCCCEEEecCCCHHHHHHHhhccE
Confidence            99999999999999988876665541       11122223455565 99999999999999999999999999999999


Q ss_pred             EecCcccccccccc
Q 023966          253 VLKSSELSTVQTFG  266 (274)
Q Consensus       253 Imk~sea~~l~~~~  266 (274)
                      ||+.+|+.+|+|++
T Consensus       202 I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  202 IMKSSEAKGLAPRA  215 (215)
T ss_dssp             --------------
T ss_pred             EecHHHhcccCCCC
Confidence            99999999999975

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.29  E-value=0.00065  Score=51.03  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=54.0

Q ss_pred             ceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCe
Q 023966          154 FVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDR  233 (274)
Q Consensus       154 ~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDw  233 (274)
                      -|||...|. +=|.+.+..--+|++|...+...|..                          .  ...+.|.|.|.||||
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~--------------------------~--~~~~~l~Y~D~dgD~   53 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL--------------------------L--DEDFQLKYKDEDGDL   53 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT--------------------------S--TSSEEEEEEETTSSE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC--------------------------C--CccEEEEeeCCCCCE
Confidence            479999996 44468888888999999999999961                          0  136999999999999


Q ss_pred             EEccC-cChhHHhhcce
Q 023966          234 MLVGD-VPWHMFVSTVK  249 (274)
Q Consensus       234 MLVGD-VPW~mFv~svK  249 (274)
                      ..+-+ .=|.+.+..++
T Consensus        54 V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen   54 VTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEESSHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHH
Confidence            98875 56888888775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.12  E-value=0.0019  Score=51.52  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=51.8

Q ss_pred             ceEEEecCcccceeeccC---CCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCC
Q 023966          154 FVKINMEGVPIGRKINLS---AYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNE  230 (274)
Q Consensus       154 ~VKV~MdG~pIGRKVDL~---~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkE  230 (274)
                      -|||.-+|.-+=-++++.   ..-+|+.|...+.+.|.-                           ....+|+|.|.|.|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---------------------------~~~~~~~l~Y~Ded   54 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---------------------------SPDADLSLTYTDED   54 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---------------------------CCCCcEEEEEECCC
Confidence            489999998555566664   567999999999999951                           11247999999999


Q ss_pred             CCeEEccCcChhHHhhcceE
Q 023966          231 GDRMLVGDVPWHMFVSTVKK  250 (274)
Q Consensus       231 GDwMLVGDVPW~mFv~svKR  250 (274)
                      |||..+-+.  .+|..++.+
T Consensus        55 gd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          55 GDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             CCEEEEccH--HHHHHHHHH
Confidence            999988765  555555554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.05  E-value=0.0023  Score=50.10  Aligned_cols=55  Identities=22%  Similarity=0.281  Sum_probs=42.1

Q ss_pred             ceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCe
Q 023966          154 FVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDR  233 (274)
Q Consensus       154 ~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDw  233 (274)
                      =|||...|.-  +.+-|..--+|++|...+.++|.-                           +..+.|.|.|.|.||||
T Consensus         2 ~vK~~~~~d~--~r~~l~~~~~~~~L~~~i~~r~~~---------------------------~~~~~f~LkY~Ddegd~   52 (82)
T cd06407           2 RVKATYGEEK--IRFRLPPSWGFTELKQEIAKRFKL---------------------------DDMSAFDLKYLDDDEEW   52 (82)
T ss_pred             EEEEEeCCeE--EEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCCCeeEEEEECCCCCe
Confidence            3899998863  445555556999999999999961                           01136999999999999


Q ss_pred             EEcc
Q 023966          234 MLVG  237 (274)
Q Consensus       234 MLVG  237 (274)
                      .++-
T Consensus        53 v~lt   56 (82)
T cd06407          53 VLLT   56 (82)
T ss_pred             EEee
Confidence            8763

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=96.89  E-value=0.0059  Score=45.83  Aligned_cols=65  Identities=22%  Similarity=0.362  Sum_probs=50.9

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      |||.-.|  --|.+-+..--+|++|...+.+.|..                           . ...+.|.|+|.||||.
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~---------------------------~-~~~~~l~Y~Dedgd~v   53 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGL---------------------------D-NQSFTLKYQDEDGDLV   53 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCC---------------------------C-CCCeEEEEECCCCCEE
Confidence            6888755  35777788889999999999999961                           0 1359999999999998


Q ss_pred             EccC-cChhHHhhcce
Q 023966          235 LVGD-VPWHMFVSTVK  249 (274)
Q Consensus       235 LVGD-VPW~mFv~svK  249 (274)
                      .+.+ .=|.+.++.++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T smart00666       54 SLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EecCHHHHHHHHHHHH
Confidence            7665 57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.81  E-value=0.0075  Score=44.93  Aligned_cols=66  Identities=23%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             ceEEEecCcccceeeccC-CCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966          154 FVKINMEGVPIGRKINLS-AYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD  232 (274)
Q Consensus       154 ~VKV~MdG~pIGRKVDL~-~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD  232 (274)
                      -|||.-.|.  =|.+=+. ..-+|++|...|.+.|..                          .  ...+.+.|.|.|||
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~--------------------------~--~~~~~l~y~D~e~d   51 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGL--------------------------D--AVSFKLKYPDEDGD   51 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCC--------------------------C--CCcEEEEeeCCCCC
Confidence            378888765  3444444 888999999999999961                          0  03699999999999


Q ss_pred             eEEccC-cChhHHhhcce
Q 023966          233 RMLVGD-VPWHMFVSTVK  249 (274)
Q Consensus       233 wMLVGD-VPW~mFv~svK  249 (274)
                      |..+.+ .=|++.++.++
T Consensus        52 ~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          52 LVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             EEEeCCHHHHHHHHHHHh
Confidence            999887 67777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.68  E-value=0.0064  Score=47.97  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=45.5

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      |||.-.|.-+--+++-++.-+|++|...+.++|.                           ++   .|.|.|-|.||||.
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~---------------------------l~---~f~lKYlDde~e~v   52 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG---------------------------LN---DIQIKYVDEENEEV   52 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC---------------------------CC---cceeEEEcCCCCEE
Confidence            7999999877778888888899999999999995                           12   49999999999998


Q ss_pred             Ec
Q 023966          235 LV  236 (274)
Q Consensus       235 LV  236 (274)
                      ++
T Consensus        53 ~l   54 (81)
T cd06396          53 SV   54 (81)
T ss_pred             EE
Confidence            86

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.57  E-value=0.013  Score=46.29  Aligned_cols=73  Identities=26%  Similarity=0.500  Sum_probs=50.1

Q ss_pred             eEEEecCcccceeeccCCC-CCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCe
Q 023966          155 VKINMEGVPIGRKINLSAY-NSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDR  233 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~-~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDw  233 (274)
                      +|+...|. | |++=+..- -+|.+|...+.+.|..-                         +..+..+.+.|.|.|||+
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~-------------------------~~~~~~flIKYkD~dGDl   55 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK-------------------------LGSSDDVLIKYKDEDGDL   55 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc-------------------------cCCcccEEEEEECCCCCE
Confidence            67777653 5 44444432 39999999999999731                         122457999999999999


Q ss_pred             EEccCc---ChhHHhhcceEEEEe
Q 023966          234 MLVGDV---PWHMFVSTVKKLLVL  254 (274)
Q Consensus       234 MLVGDV---PW~mFv~svKRLrIm  254 (274)
                      .-|-+-   -|..=....+||+|.
T Consensus        56 VTIts~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          56 ITIFDSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             EEeccHHHHHHHHhcCcceEEEEe
Confidence            999874   455444455566653

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.47  E-value=0.06  Score=42.96  Aligned_cols=59  Identities=27%  Similarity=0.405  Sum_probs=43.0

Q ss_pred             cceEEEecC---cccceee--ccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEe
Q 023966          153 LFVKINMEG---VPIGRKI--NLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYE  227 (274)
Q Consensus       153 ~~VKV~MdG---~pIGRKV--DL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYE  227 (274)
                      +.||.+..|   .+==|++  |=....+|+.|...+.+||...                          .+ ..|+|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l--------------------------~~-~~ftlky~   53 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL--------------------------RG-KNFQLFWK   53 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc--------------------------CC-CcEEEEEE
Confidence            468888877   2233444  4466679999999999999621                          11 36999999


Q ss_pred             cCCCCeEEccC
Q 023966          228 DNEGDRMLVGD  238 (274)
Q Consensus       228 DkEGDwMLVGD  238 (274)
                      |.|||..-+..
T Consensus        54 DeeGDlvtIss   64 (87)
T cd06402          54 DEEGDLVAFSS   64 (87)
T ss_pred             CCCCCEEeecC
Confidence            99999987654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.37  E-value=0.053  Score=43.11  Aligned_cols=55  Identities=25%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      ||+.-.|.-.--.+|.  .-+|++|.+.+.+||..                          .. ...|++.|.|.|||--
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~--------------------------~~-~q~ft~kw~DEEGDp~   53 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF--------------------------HN-DQPFTLKWIDEEGDPC   53 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC--------------------------CC-CCcEEEEEECCCCCce
Confidence            7899999755555665  77899999999999962                          01 1359999999999987


Q ss_pred             EccC
Q 023966          235 LVGD  238 (274)
Q Consensus       235 LVGD  238 (274)
                      -+..
T Consensus        54 tiSS   57 (83)
T cd06404          54 TISS   57 (83)
T ss_pred             eecC
Confidence            6654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.30  E-value=0.053  Score=42.88  Aligned_cols=68  Identities=15%  Similarity=0.257  Sum_probs=49.9

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      ||..-|..=-=-.+|.....+|+++++-|+.||.  +                         . .-.|+|.|.|.+||.+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~--l-------------------------~-~~~f~i~Y~D~~gDLL   54 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHH--I-------------------------P-NVDFLIGYTDPHGDLL   54 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhC--C-------------------------C-CCcEEEEEeCCCCCEe
Confidence            6666776533335566667999999999999996  1                         1 1369999999999999


Q ss_pred             Ecc-CcChhHHhhcceE
Q 023966          235 LVG-DVPWHMFVSTVKK  250 (274)
Q Consensus       235 LVG-DVPW~mFv~svKR  250 (274)
                      -+- |+-+..=+++++.
T Consensus        55 PInNDdNf~kAlssa~p   71 (80)
T cd06403          55 PINNDDNFLKALSSANP   71 (80)
T ss_pred             cccCcHHHHHHHHcCCC
Confidence            775 5566666667763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.99  E-value=0.05  Score=43.31  Aligned_cols=51  Identities=31%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             cccceeeccC--CCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeEEcc
Q 023966          162 VPIGRKINLS--AYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLVG  237 (274)
Q Consensus       162 ~pIGRKVDL~--~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwMLVG  237 (274)
                      .|-||.+=++  ...||.+|..++.+=|+.             .          +  .....|.|.|.|.||||.|.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~-------------d----------~--~~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGD-------------D----------D--FETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCC-------------c----------c--ccCCcccEEEEcCCCCEEEEe
Confidence            4567765544  478999999999999961             0          0  002369999999999999863

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.15  E-value=0.17  Score=40.15  Aligned_cols=66  Identities=18%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      -||+-+|.  .|++....-=+|..|.+.|+.+|.-                           ... .+.|+|.|.|||..
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~l---------------------------p~~-~~~vtYiDeD~D~I   52 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNL---------------------------PEI-KVGVTYIDNDNDEI   52 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCC---------------------------Chh-HeEEEEEcCCCCEE
Confidence            48888884  7888888889999999999999961                           111 38999999999987


Q ss_pred             EccC-cChhHHhhcceE
Q 023966          235 LVGD-VPWHMFVSTVKK  250 (274)
Q Consensus       235 LVGD-VPW~mFv~svKR  250 (274)
                      -+-| .=-++|.+-..|
T Consensus        53 Tlssd~eL~d~~~~~~~   69 (82)
T cd06397          53 TLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EecchHHHHHHHHhccc
Confidence            5544 455566554444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=85.96  E-value=3  Score=33.36  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=47.5

Q ss_pred             cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966          153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD  232 (274)
Q Consensus       153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD  232 (274)
                      +=|||+-.|.  -|-|-+..-=+|++|...+.++|.-                           .  ..++|-|.|. ||
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~---------------------------~--~~~~iKykDE-GD   50 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF---------------------------K--RRLKIKMKDD-GD   50 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------C--CceEEEEEcC-CC
Confidence            4589998887  4566666666799999999999961                           1  2699999999 99


Q ss_pred             eEEccCc-ChhHHhhcce
Q 023966          233 RMLVGDV-PWHMFVSTVK  249 (274)
Q Consensus       233 wMLVGDV-PW~mFv~svK  249 (274)
                      ..-++|- =-++-+.++|
T Consensus        51 ~iti~sq~DLd~Ai~~a~   68 (86)
T cd06408          51 MITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             CccccCHHHHHHHHHHHH
Confidence            9888773 2334444443

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.14
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.1
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.74
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.46
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	89.92
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	81.56

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.14  E-value=0.024  Score=44.09  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966          153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD  232 (274)
Q Consensus       153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD  232 (274)
                      +-||..-|+.--=-.||-....+|++|+.-|+.+|.  +.                          ...|++.|.|.|||
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~--L~--------------------------~~~f~i~Y~D~dGD   58 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ--IP--------------------------GLDVLLGYTDAHGD   58 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT--CT--------------------------TCCCEEEEECTTSC
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC--CC--------------------------CCCEEEEEECCCCC
Confidence            568999988744445666677899999999999996  11                          12599999999999


Q ss_pred             eEEccCc-ChhHHhhcce---EEEE
Q 023966          233 RMLVGDV-PWHMFVSTVK---KLLV  253 (274)
Q Consensus       233 wMLVGDV-PW~mFv~svK---RLrI  253 (274)
                      ++-+=+. -..+=+.++|   ||.|
T Consensus        59 LlpInnDdnl~~Al~~a~plLRl~I   83 (86)
T 1wmh_B           59 LLPLTNDDSLHRALASGPPPLRLLV   83 (86)
T ss_dssp             EEECCSHHHHHHHTTSSSSCEEEEE
T ss_pred             EeeecCHHHHHHHHHhCCCcEEEEE
Confidence            9987654 4555566666   4544

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.10  E-value=0.016  Score=45.21  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             ccceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCC
Q 023966          152 NLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEG  231 (274)
Q Consensus       152 ~~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEG  231 (274)
                      .+=|||+-.|.-+--.|+.  .-+|++|...|.++|.-                          . ....+++.|.|.||
T Consensus         6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~--------------------------~-~~~~f~lky~DEeG   56 (89)
T 1vd2_A            6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSF--------------------------D-NEQLFTMKWIDEEG   56 (89)
T ss_dssp             CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTC--------------------------C-SSCCEEEEECCSSS
T ss_pred             eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCC--------------------------C-CCCeEEEEEECCCC
Confidence            3668999999755444544  56999999999999961                          0 11369999999999


Q ss_pred             CeEEcc
Q 023966          232 DRMLVG  237 (274)
Q Consensus       232 DwMLVG  237 (274)
                      |+.-+-
T Consensus        57 D~itis   62 (89)
T 1vd2_A           57 DPCTVS   62 (89)
T ss_dssp             CCEECC
T ss_pred             Cccccc
Confidence            986553

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.74  E-value=0.043  Score=43.71  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             ccceEEEecCc----ccceeeccCC-----------CCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCC
Q 023966          152 NLFVKINMEGV----PIGRKINLSA-----------YNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSV  216 (274)
Q Consensus       152 ~~~VKV~MdG~----pIGRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll  216 (274)
                      ++-||++..|.    .==|++-|..           ..+|++|...+.++|..+                          
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l--------------------------   58 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL--------------------------   58 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS--------------------------
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc--------------------------
Confidence            56799999762    2335555432           248999999999999621                          


Q ss_pred             CCCCceEEEEecCCCCeEEccCc
Q 023966          217 AKSDEYTLLYEDNEGDRMLVGDV  239 (274)
Q Consensus       217 ~gs~eyvltYEDkEGDwMLVGDV  239 (274)
                      .+ ..|.|.|.|.|||+.-+-+.
T Consensus        59 ~~-~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           59 RP-GGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CS-SCEEEEEECTTCCEEEECSH
T ss_pred             CC-CcEEEEEECCCCCEEEecCH
Confidence            11 26999999999999877653

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.46  E-value=0.14  Score=41.90  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=43.7

Q ss_pred             CccceEEEecCc----ccceeeccC-----------CCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCC
Q 023966          151 TNLFVKINMEGV----PIGRKINLS-----------AYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSS  215 (274)
Q Consensus       151 ~~~~VKV~MdG~----pIGRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~l  215 (274)
                      .++-||++..|.    .==|++-|.           .-.+|+.|...+.++|..+                         
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-------------------------   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-------------------------   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------------------------
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------------------------
Confidence            367899999751    223555443           2459999999999999621                         


Q ss_pred             CCCCCceEEEEecCCCCeEEccC
Q 023966          216 VAKSDEYTLLYEDNEGDRMLVGD  238 (274)
Q Consensus       216 l~gs~eyvltYEDkEGDwMLVGD  238 (274)
                       .+ ..|.|.|.|.|||+.-+-.
T Consensus        74 -~~-~~f~l~YkDEdGDlItISs   94 (117)
T 2ktr_A           74 -RP-GGFQAHYRAERGDLVAFSS   94 (117)
T ss_dssp             -CS-SCEEEEEECTTCCEEEECS
T ss_pred             -CC-CcEEEEEECCCCCEEEecC
Confidence             11 2599999999999887765

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=89.92  E-value=1.6  Score=34.57  Aligned_cols=74  Identities=15%  Similarity=0.345  Sum_probs=53.4

Q ss_pred             ccceEEEecCcc----cc--eeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEE
Q 023966          152 NLFVKINMEGVP----IG--RKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLL  225 (274)
Q Consensus       152 ~~~VKV~MdG~p----IG--RKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvlt  225 (274)
                      ++-|||+-+...    ++  |.|=+..--+|++|...+.+-|.....               +     + +  +....|-
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~---------------~-----~-i--~~~~klk   61 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN---------------N-----N-I--SPITKIK   61 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS---------------S-----C-C--CCCCCEE
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc---------------c-----c-c--cceeEEE
Confidence            366888877421    22  666677888999999999999973200               0     0 0  1347899


Q ss_pred             EecCCCCeEEccC-cChhHHhhcc
Q 023966          226 YEDNEGDRMLVGD-VPWHMFVSTV  248 (274)
Q Consensus       226 YEDkEGDwMLVGD-VPW~mFv~sv  248 (274)
                      |+|.|||+...++ .=|+|-+.++
T Consensus        62 YkDEdGD~Vtl~sddDl~~A~e~~   85 (98)
T 1q1o_A           62 YQDEDGDFVVLGSDEDWNVAKEML   85 (98)
T ss_dssp             EECSSSCEEEECSHHHHHHHHHHH
T ss_pred             EEcCCCCEEEEcCHHHHHHHHHHH
Confidence            9999999988776 5899888876

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=81.56  E-value=2.4  Score=34.13  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             ccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeEEc
Q 023966          169 NLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRMLV  236 (274)
Q Consensus       169 DL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwMLV  236 (274)
                      ||+.--.|.+|..-..+-|..                              .+-+|-|.|.|||+.-+
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~------------------------------~DIaLNYrD~eGDLIri   65 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLVRL   65 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC------------------------------SSEEEEEECTTSCEEEC
T ss_pred             ccccCCCHHHHHHHHHHHhcc------------------------------cceeeeeecCCCCEEEE
Confidence            678888999999999999951                              25789999999998544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.83
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.28
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	85.77

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0013  Score=49.29  Aligned_cols=64  Identities=6%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             cceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCC
Q 023966          153 LFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGD  232 (274)
Q Consensus       153 ~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGD  232 (274)
                      .=|||...|..|=-+|-+....+|++|...|...|.                           +   ..+.|.|.|.|+|
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~---------------------------l---~~~~lkY~Ddd~e   54 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD---------------------------L---NTIQIKYLDEENE   54 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT---------------------------C---SSEEEEEECTTSC
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC---------------------------c---ccceEEEEcCCCC
Confidence            458999999866667877888999999999999995                           1   1489999999999


Q ss_pred             eEEcc-CcChhHHhh
Q 023966          233 RMLVG-DVPWHMFVS  246 (274)
Q Consensus       233 wMLVG-DVPW~mFv~  246 (274)
                      |.++. |.=.++.+.
T Consensus        55 ~v~l~~d~dl~E~~~   69 (85)
T d2bkfa1          55 EVSINSQGEYEEALK   69 (85)
T ss_dssp             EEEECSHHHHHHHHH
T ss_pred             EEEEecHHHHHHHHH
Confidence            98875 334444444

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.015  Score=42.58  Aligned_cols=71  Identities=14%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             CccceEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCC
Q 023966          151 TNLFVKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNE  230 (274)
Q Consensus       151 ~~~~VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkE  230 (274)
                      +..=|||+.++.-+-=+|  ..--+|.+|...+.+.|..                              ..|+|-|.|.|
T Consensus        11 ~~ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~rf~~------------------------------~~~~lkY~Ded   58 (85)
T d1ip9a_          11 KTTKIKFYYKDDIFALML--KGDTTYKELRSKIAPRIDT------------------------------DNFKLQTKLFD   58 (85)
T ss_dssp             CCEEEEECBTTCCEEEEE--CSCCCHHHHHHHHHHHHTS------------------------------SCEEEEECCSS
T ss_pred             CCEEEEEEECCcEEEEEe--CCCCCHHHHHHHHHHHhCC------------------------------CceEEEEEcCC
Confidence            456789999887444444  5557899999999999951                              14899999999


Q ss_pred             CCeEEccC-cChhHHhhcceEEEE
Q 023966          231 GDRMLVGD-VPWHMFVSTVKKLLV  253 (274)
Q Consensus       231 GDwMLVGD-VPW~mFv~svKRLrI  253 (274)
                      |||..+-+ .=+++=+....||.+
T Consensus        59 gd~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          59 GSGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             SCCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEeCHHHHHHHHHhcCcEEE
Confidence            99986544 455655555555544

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.77  E-value=1.1  Score=32.79  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHHhccccccccchhhhcccccccCCccccCCCCCCCceEEEEecCCCCeE
Q 023966          155 VKINMEGVPIGRKINLSAYNSYEELSFAIDELFKGLLPVQQDLFAAGCKNKMEGSKIDTSSVAKSDEYTLLYEDNEGDRM  234 (274)
Q Consensus       155 VKV~MdG~pIGRKVDL~~~~sY~eL~~aLe~MF~~~~~~q~~~~~~~~~~~~~e~~~~~~ll~gs~eyvltYEDkEGDwM  234 (274)
                      ||=..|..=-=-.+|.....+|++.+.-|+.|-.  +                          ..-+++|.|.|..||.+
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~--l--------------------------~~~~f~i~Y~D~hgDLL   56 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ--I--------------------------PGLDVLLGYTDAHGDLL   56 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT--C--------------------------TTCCCEEEEECTTSCEE
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcC--C--------------------------CCCcEEEEEecCCCCcc
Confidence            4555554433336788889999999999999985  1                          12369999999999999


Q ss_pred             EccC-cChhHHhhcce
Q 023966          235 LVGD-VPWHMFVSTVK  249 (274)
Q Consensus       235 LVGD-VPW~mFv~svK  249 (274)
                      -+-. .-+.-=+++++
T Consensus        57 PINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          57 PLTNDDSLHRALASGP   72 (82)
T ss_dssp             ECCSHHHHHHHTTSSS
T ss_pred             cccCchHHHHHHHhcC
Confidence            8754 44444455665