Citrus Sinensis ID: 023974
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 274 | ||||||
| 255579025 | 276 | conserved hypothetical protein [Ricinus | 0.996 | 0.989 | 0.613 | 5e-88 | |
| 224088176 | 275 | predicted protein [Populus trichocarpa] | 0.978 | 0.974 | 0.583 | 8e-86 | |
| 225441506 | 271 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.977 | 0.592 | 2e-82 | |
| 449437559 | 270 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.974 | 0.585 | 2e-80 | |
| 15227474 | 266 | uncharacterized protein [Arabidopsis tha | 0.759 | 0.781 | 0.676 | 3e-76 | |
| 28207164 | 266 | hypothetical protein [Arabidopsis thalia | 0.759 | 0.781 | 0.671 | 1e-75 | |
| 297824159 | 263 | hypothetical protein ARALYDRAFT_345995 [ | 0.748 | 0.779 | 0.671 | 3e-74 | |
| 297739812 | 196 | unnamed protein product [Vitis vinifera] | 0.693 | 0.969 | 0.687 | 4e-70 | |
| 357510021 | 259 | hypothetical protein MTR_7g093640 [Medic | 0.930 | 0.984 | 0.496 | 3e-58 | |
| 388500964 | 263 | unknown [Lotus japonicus] | 0.952 | 0.992 | 0.474 | 5e-58 |
| >gi|255579025|ref|XP_002530364.1| conserved hypothetical protein [Ricinus communis] gi|223530111|gb|EEF32025.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 170/277 (61%), Positives = 210/277 (75%), Gaps = 4/277 (1%)
Query: 1 MNSLFLPSSLLL-FPSCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQLSLST 59
MNS+ LP SL+ FPS SP R + QY T H + + + SH + + SL T
Sbjct: 1 MNSILLPLSLVFQFPSFHF-SPRHRLQAQYTSTSCVGHRVHFISSFSHLFPSNSRYSLHT 59
Query: 60 RKTSIGAASPP-DEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESS 118
++SIGA P DEG VSV++FEDF E DWSFLD ++LN KEH Q++ QIISAGEI+E+S
Sbjct: 60 HQSSIGATVPSNDEGPVSVIHFEDFIEKDWSFLDFEDLNSKEHKQKVGQIISAGEIEETS 119
Query: 119 KVLVSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGP 177
++LVSI SEEFVD++V++SP S L VVHDSLF+LA IKEKYD VKCWQGELI+VP+KW P
Sbjct: 120 RILVSIGSEEFVDQLVDTSPKSHLFVVHDSLFLLAMIKEKYDKVKCWQGELIHVPEKWAP 179
Query: 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLP 237
LDVVFLYFLP +PF LDQVF TLA RCS GARV++SH QGRE L+KQRKQ+ DVIVS+LP
Sbjct: 180 LDVVFLYFLPVLPFKLDQVFGTLAQRCSQGARVIVSHLQGREVLEKQRKQYQDVIVSELP 239
Query: 238 DQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSKSKN 274
D+MTLQ A N+ FQ+ +VDE G YL VL+FS ++N
Sbjct: 240 DKMTLQNVAANNSFQVTEYVDEPGLYLAVLRFSGARN 276
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088176|ref|XP_002308356.1| predicted protein [Populus trichocarpa] gi|222854332|gb|EEE91879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 164/281 (58%), Positives = 207/281 (73%), Gaps = 13/281 (4%)
Query: 1 MNSLFLPSSLLL------FPSCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQ 54
MNS+ LPSS +L F C+ + +P YI + +L HS +P+ +
Sbjct: 1 MNSILLPSSPVLQLPFPQFSLCR------QLQPLYISKSRGNRCASQNSSLPHSFQPNSK 54
Query: 55 LSLSTRKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI 114
S + + I A P DEG VSV+NFEDF E DWSFLDS+E N KEH Q I +IISAG I
Sbjct: 55 FSFHSHQPLIATAVPSDEGPVSVINFEDFIEKDWSFLDSEESNSKEHDQNIGRIISAGRI 114
Query: 115 DESSKVLVSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD 173
+E+S+VLVS+ SE FVDR+V++SP SLLL+VHDSLF+LA +KEKYD VKCWQGELI+V +
Sbjct: 115 EETSRVLVSLGSEGFVDRLVDTSPCSLLLIVHDSLFLLACVKEKYDKVKCWQGELIHVSE 174
Query: 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIV 233
KW PLDVVFLYFLPA+PF LD+V +LA RCSPGAR+VISHPQGRE L++Q+KQ+ DV+
Sbjct: 175 KWAPLDVVFLYFLPALPFKLDEVLGSLAKRCSPGARLVISHPQGREVLEQQKKQYQDVVT 234
Query: 234 SDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSKSKN 274
SDLPD+MTLQKAA NH F++ +VDE GFYL VL+ S ++N
Sbjct: 235 SDLPDKMTLQKAAANHSFEMVEYVDEPGFYLTVLRLSDARN 275
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441506|ref|XP_002280431.1| PREDICTED: uncharacterized protein LOC100267633 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/277 (59%), Positives = 203/277 (73%), Gaps = 12/277 (4%)
Query: 1 MNSLFLPSS-LLLFPSCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQLSLST 59
MN+LF SS LL PS K+P P++ P + + +H N P+ LS S
Sbjct: 1 MNALFFSSSPLLATPSRKAP-PFI-PLRHHCYSHYSSYHRGNYPSFP-------LLSSSI 51
Query: 60 RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKE-HIQRIDQIISAGEIDESS 118
+ ++GAA+P +E VSV++FEDF E DWSFLDSD N +E H Q+ D IIS G I E+S
Sbjct: 52 HRLTVGAATPSNEEAVSVIDFEDFMEKDWSFLDSDGTNSEEEHKQKTDWIISKGNIGENS 111
Query: 119 KVLVSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGP 177
+VLVS +EEFVD++V+SSP LLLVVHDSLFVLAGIKEKYD VKCWQGELIYVP+KW P
Sbjct: 112 RVLVSTGAEEFVDQLVDSSPCQLLLVVHDSLFVLAGIKEKYDKVKCWQGELIYVPEKWTP 171
Query: 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLP 237
DVVFLYFLPA+PF LD++F LA RC PGARVVISH QGRE L++QR+Q+PDVI+SDLP
Sbjct: 172 FDVVFLYFLPALPFELDRIFGELAKRCLPGARVVISHLQGREVLEQQRRQYPDVIISDLP 231
Query: 238 DQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSKSKN 274
D+MTLQK A +H F++ FV+E FYL VL F + +N
Sbjct: 232 DKMTLQKVAADHSFEMTEFVEEPSFYLAVLNFREVRN 268
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437559|ref|XP_004136559.1| PREDICTED: uncharacterized protein LOC101219545 [Cucumis sativus] gi|449518537|ref|XP_004166298.1| PREDICTED: uncharacterized protein LOC101227832 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/275 (58%), Positives = 204/275 (74%), Gaps = 12/275 (4%)
Query: 1 MNSLFLPSSLLLFPSCKSPSPYLRPKPQYICTFNRHHHDYNL--PTLSHSLKPSLQLSLS 58
MNSLFL SSL+ +CK S LR +P IC HH+ + P +S P+L +S S
Sbjct: 1 MNSLFLHSSLVPSVTCKPRSFPLR-RPIRICALRGSHHNTRIFAPLISF---PALHISNS 56
Query: 59 TRKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELN-FKEHIQRIDQIISAGEIDES 117
+S +P +EG VSVVNFED E D+SFLDSD+ + +EH Q+I +IISAGEI ES
Sbjct: 57 IACSS----TPSNEGVVSVVNFEDLVEKDFSFLDSDDFSSIEEHGQKIRRIISAGEIVES 112
Query: 118 SKVLVSISSEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWG 176
S+V+VSISSE FVD++ + +PS LLVVHDS+ LA IKEKYD VKCWQGE+IYVP+KWG
Sbjct: 113 SQVMVSISSEGFVDQLFQLAPSRSLLVVHDSILTLACIKEKYDKVKCWQGEVIYVPEKWG 172
Query: 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDL 236
P D VFLY+LPAMPF LD +F L+ RC GAR+VISHP GR+AL+++++QFPDV+VSDL
Sbjct: 173 PFDAVFLYYLPAMPFELDAIFGALSERCVAGARLVISHPNGRKALEQEQQQFPDVVVSDL 232
Query: 237 PDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271
PD+MTLQKAA +H F + F+DE GFYL +LKF+K
Sbjct: 233 PDRMTLQKAAADHSFDLTEFIDEHGFYLAILKFNK 267
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227474|ref|NP_181726.1| uncharacterized protein [Arabidopsis thaliana] gi|2257716|gb|AAB63558.1| hypothetical protein [Arabidopsis thaliana] gi|18491233|gb|AAL69441.1| At2g41950/T6D20.26 [Arabidopsis thaliana] gi|61742665|gb|AAX55153.1| hypothetical protein At2g41950 [Arabidopsis thaliana] gi|330254961|gb|AEC10055.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/213 (67%), Positives = 171/213 (80%), Gaps = 5/213 (2%)
Query: 60 RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSK 119
R + ++SPP EGTVSVV DF E DWSFL+S E++ EH Q+I++II AGE+ ESS+
Sbjct: 57 RAFCVSSSSPP-EGTVSVV---DFHEKDWSFLESMEIDSTEHTQKIERIIKAGELSESSR 112
Query: 120 VLVSISSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178
VLVSISSE FVDR+VESSPS LLL+VHDSLF LA IKEKYD VKCWQGE+IYVP+KW PL
Sbjct: 113 VLVSISSETFVDRLVESSPSQLLLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPL 172
Query: 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPD 238
D VFLYFLPA+PF LD++F+TL+ RCS GARVVISHPQGR L++QRK+F DV+VSDLPD
Sbjct: 173 DAVFLYFLPALPFDLDELFKTLSQRCSSGARVVISHPQGRLGLEQQRKEFSDVVVSDLPD 232
Query: 239 QMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271
+ TL A H F++ FVDE G YL VLK SK
Sbjct: 233 ESTLSNVAEKHSFELTQFVDEQGLYLAVLKSSK 265
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28207164|gb|AAO37222.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/213 (67%), Positives = 170/213 (79%), Gaps = 5/213 (2%)
Query: 60 RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSK 119
R + ++SPP EGTVSVV DF E DWSFL+S E++ EH Q+I++II AGE+ ESS+
Sbjct: 57 RAFCVSSSSPP-EGTVSVV---DFHEKDWSFLESMEIDSTEHTQKIERIIKAGELSESSR 112
Query: 120 VLVSISSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178
VLVSI SE FVDR+VESSPS LLL+VHDSLF LA IKEKYD VKCWQGE+IYVP+KW PL
Sbjct: 113 VLVSIGSETFVDRLVESSPSQLLLIVHDSLFTLACIKEKYDKVKCWQGEMIYVPEKWSPL 172
Query: 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPD 238
D VFLYFLPA+PF LD++F+TL+ RCS GARVVISHPQGR L++QRK+F DV+VSDLPD
Sbjct: 173 DAVFLYFLPALPFDLDELFKTLSQRCSSGARVVISHPQGRLGLEQQRKEFSDVVVSDLPD 232
Query: 239 QMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271
+ TL A H F++ FVDE G YL VLK SK
Sbjct: 233 ESTLSNVAEKHSFELTQFVDEQGLYLAVLKSSK 265
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824159|ref|XP_002879962.1| hypothetical protein ARALYDRAFT_345995 [Arabidopsis lyrata subsp. lyrata] gi|297325801|gb|EFH56221.1| hypothetical protein ARALYDRAFT_345995 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 141/210 (67%), Positives = 166/210 (79%), Gaps = 5/210 (2%)
Query: 60 RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSK 119
R + ++SPP EGTVSV DF E DWSFL+S E+ EH Q+I++II AGEI ESS+
Sbjct: 54 RAFCVSSSSPP-EGTVSVF---DFHEKDWSFLESMEIESTEHTQKIERIIKAGEISESSR 109
Query: 120 VLVSISSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178
VLVSISSE FVDR+VESSPS LLL+VHDSLF LA +KEKYD VKCWQGELIYVP+KW PL
Sbjct: 110 VLVSISSEAFVDRLVESSPSQLLLIVHDSLFTLACVKEKYDKVKCWQGELIYVPEKWSPL 169
Query: 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPD 238
D VFLYFLPA+PF LD +F+TL+ RCS GARVVISHPQGR+ L++QRK+F DV+VSDLPD
Sbjct: 170 DAVFLYFLPALPFDLDDLFKTLSQRCSSGARVVISHPQGRQGLEQQRKEFSDVVVSDLPD 229
Query: 239 QMTLQKAAGNHCFQIDNFVDESGFYLVVLK 268
TL+ A F++ FVDE G YL VLK
Sbjct: 230 DSTLRNVAKKRSFELTQFVDEQGLYLAVLK 259
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739812|emb|CBI29994.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/192 (68%), Positives = 156/192 (81%), Gaps = 2/192 (1%)
Query: 85 EIDWSFLDSDELNFKE-HIQRIDQIISAGEIDESSKVLVSISSEEFVDRVVESSP-SLLL 142
E DWSFLDSD N +E H Q+ D IIS G I E+S+VLVS +EEFVD++V+SSP LLL
Sbjct: 2 EKDWSFLDSDGTNSEEEHKQKTDWIISKGNIGENSRVLVSTGAEEFVDQLVDSSPCQLLL 61
Query: 143 VVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLAN 202
VVHDSLFVLAGIKEKYD VKCWQGELIYVP+KW P DVVFLYFLPA+PF LD++F LA
Sbjct: 62 VVHDSLFVLAGIKEKYDKVKCWQGELIYVPEKWTPFDVVFLYFLPALPFELDRIFGELAK 121
Query: 203 RCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262
RC PGARVVISH QGRE L++QR+Q+PDVI+SDLPD+MTLQK A +H F++ FV+E F
Sbjct: 122 RCLPGARVVISHLQGREVLEQQRRQYPDVIISDLPDKMTLQKVAADHSFEMTEFVEEPSF 181
Query: 263 YLVVLKFSKSKN 274
YL VL F + +N
Sbjct: 182 YLAVLNFREVRN 193
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510021|ref|XP_003625299.1| hypothetical protein MTR_7g093640 [Medicago truncatula] gi|355500314|gb|AES81517.1| hypothetical protein MTR_7g093640 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/276 (49%), Positives = 171/276 (61%), Gaps = 21/276 (7%)
Query: 1 MNSLFLPSSLLLFP---SCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQLSL 57
MNS L S +L P CK P + KPQ I HH N S SL S
Sbjct: 1 MNSSSLASFILTPPLPLPCKFNHPRFQIKPQPI-----FHHPLN----SISLCSKSNFST 51
Query: 58 STRKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDES 117
+ S P+E S V E+F + DWS LD N ID+IIS+G+IDE+
Sbjct: 52 KSSSNINNPVSIPEENA-SYVAVEEFIDKDWSVLDYTGPN-------IDRIISSGKIDEN 103
Query: 118 SKVLVSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWG 176
S+VLVS SEEFVD +V S +LV+HDSL +LA + EKYD +KCWQGE+ VP+KW
Sbjct: 104 SRVLVSSGSEEFVDCLVGGSKFKSMLVLHDSLLILALLIEKYDNIKCWQGEVTIVPEKWS 163
Query: 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDL 236
P DVVFLYFLPA+PF L+ V +LA +CSPG RV+ISHPQGRE L++QR+Q+PDV+VSDL
Sbjct: 164 PFDVVFLYFLPALPFKLEDVLGSLAPKCSPGGRVIISHPQGREILKQQRQQYPDVVVSDL 223
Query: 237 PDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSKS 272
PD+ LQ A + F + FVDE GFYL VL S++
Sbjct: 224 PDKTHLQSVAAANSFNVAEFVDEPGFYLAVLIKSRT 259
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500964|gb|AFK38548.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 172/274 (62%), Gaps = 13/274 (4%)
Query: 1 MNSLFLPSSLLLFPSCKSPSPYLRPKPQYICTFNRHHHDYNLPTLSHSLKPSLQ-LSLST 59
MNSL L S L +P +L P N + N ++S KPS+ SL
Sbjct: 1 MNSLSLGSFTLTYPPPCKFRTHLHPN-----FHNLYIKGANSSSVSLKPKPSVAPTSLRA 55
Query: 60 RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSK 119
K++ A EG S V + E DWS L + ++I+SAG+++ESS+
Sbjct: 56 SKSNFDAPVSLPEGNASFVPIGEIIEKDWSVL------YHGDPSADNRIVSAGKVEESSR 109
Query: 120 VLVSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178
VLVS SE+FVD ++ SP LLVVHDSL +LA IKEK D +KCWQGE+ VP+KW P
Sbjct: 110 VLVSTGSEDFVDCLMGFSPFKSLLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPF 169
Query: 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPD 238
DVVFLYFLP +PF LD++ +LAN+CSPG RV+ISHPQGR+AL++QR+Q+P+V+VSDLPD
Sbjct: 170 DVVFLYFLPGLPFKLDEILGSLANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPD 229
Query: 239 QMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSKS 272
+ LQ AA + F + FVDE FYL VL S++
Sbjct: 230 KTYLQTAAAANSFDVAEFVDEPSFYLAVLICSRA 263
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Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 274 | ||||||
| TAIR|locus:2064596 | 266 | AT2G41950 "AT2G41950" [Arabido | 0.810 | 0.834 | 0.603 | 1.4e-68 |
| TAIR|locus:2064596 AT2G41950 "AT2G41950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.4e-68, Sum P(2) = 1.4e-68
Identities = 140/232 (60%), Positives = 165/232 (71%)
Query: 46 SHSLKPS-LQLSLST----RKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLDSDELNFKE 100
SH P L S S R + ++SPP EGTVSVV DF E DWSFL+S E++ E
Sbjct: 38 SHLFSPQHLSFSQSNVSRYRAFCVSSSSPP-EGTVSVV---DFHEKDWSFLESMEIDSTE 93
Query: 101 HIQRIDQIISAGEIDESSKVLVSISSEEFVDRXXXXX-XXXXXXXHDSLFVLAGIKEKYD 159
H Q+I++II AGE+ ESS+VLVSISSE FVDR HDSLF LA IKEKYD
Sbjct: 94 HTQKIERIIKAGELSESSRVLVSISSETFVDRLVESSPSQLLLIVHDSLFTLACIKEKYD 153
Query: 160 TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE 219
VKCWQGE+IYVP+KW PLD VFLYFLPA+PF LD++F+TL+ RCS GARVVISHPQGR
Sbjct: 154 KVKCWQGEMIYVPEKWSPLDAVFLYFLPALPFDLDELFKTLSQRCSSGARVVISHPQGRL 213
Query: 220 ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271
L++QRK+F DV+VSDLPD+ TL A H F++ FVDE G YL VLK SK
Sbjct: 214 GLEQQRKEFSDVVVSDLPDESTLSNVAEKHSFELTQFVDEQGLYLAVLKSSK 265
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00025410001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (271 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 100.0 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 100.0 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.97 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.95 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.95 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.91 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.9 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.9 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.9 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.9 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.88 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.88 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.88 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.87 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.86 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.85 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.85 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.84 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.84 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.84 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.84 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.83 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.82 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.81 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.79 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.79 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.78 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.78 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.77 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.76 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.76 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.74 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.74 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.73 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.73 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.72 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.72 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.72 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.71 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.71 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.71 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.71 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.7 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.7 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.69 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.68 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.68 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.67 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.67 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.66 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.65 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.65 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.64 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.64 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.63 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.63 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.63 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.63 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.63 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.61 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.61 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.6 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.58 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.58 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.57 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.56 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.55 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.55 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.53 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.52 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.51 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.51 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.5 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.5 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.48 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.48 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.47 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.46 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.45 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.45 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.45 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.44 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.44 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.44 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.44 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.43 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.43 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.41 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.4 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.39 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.38 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.38 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.37 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.37 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.37 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.36 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.35 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.34 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.33 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.33 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.33 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.32 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.32 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.31 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.31 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.31 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.3 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.29 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.25 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.25 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.21 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.21 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.19 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.18 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.16 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.14 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.13 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.12 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.11 | |
| PLN02366 | 308 | spermidine synthase | 99.1 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.1 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.09 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.08 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.06 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.04 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.04 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.04 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.99 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.98 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.98 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.98 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.98 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.96 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.95 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.94 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.94 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.89 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.88 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.87 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.85 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.85 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.84 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.83 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.81 | |
| PLN02823 | 336 | spermine synthase | 98.8 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.79 | |
| PLN02476 | 278 | O-methyltransferase | 98.77 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.75 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.73 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.72 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.69 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.68 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.65 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.65 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.64 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.64 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.64 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.64 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.63 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.6 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.59 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.58 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.54 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.53 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.53 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.53 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.51 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.49 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.49 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.44 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.43 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.42 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.41 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.41 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.39 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.38 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.38 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.37 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.37 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.36 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.33 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.26 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.24 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.24 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.21 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.2 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.2 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.19 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.19 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.18 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.15 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.12 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.12 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.11 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.11 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.03 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.0 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.96 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.96 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.95 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.88 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.88 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.87 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.86 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.83 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.78 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.76 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.75 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 97.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.62 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.61 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.59 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.52 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.48 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.48 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.41 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.4 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.4 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.38 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.35 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.31 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.2 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.19 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 97.17 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.11 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.09 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 97.05 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 97.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.03 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.01 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.0 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.93 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.91 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.84 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.74 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.74 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 96.71 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.68 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.66 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.62 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.58 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.57 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 96.57 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.52 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.5 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.4 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.39 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.34 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.33 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 96.33 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 96.3 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 96.29 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 96.27 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.25 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 96.23 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 96.18 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 96.14 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 96.14 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.08 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 96.0 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 95.95 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.92 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 95.92 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 95.92 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.9 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 95.88 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.77 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.74 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 95.71 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.64 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.59 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 95.57 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.48 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 95.44 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 95.43 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.43 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 95.4 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 95.33 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 95.33 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.32 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 95.29 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 95.27 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 95.27 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 95.22 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 95.19 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 95.16 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.08 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.03 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 95.03 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 94.88 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.88 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 94.82 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.79 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.73 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 94.65 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 94.38 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 94.37 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.07 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 94.01 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 94.0 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 93.97 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 93.96 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.89 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.88 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 93.82 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 93.65 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.64 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.63 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.5 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 93.48 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.42 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 93.42 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.41 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.35 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 93.33 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.33 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.33 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.3 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 93.25 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 93.12 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.08 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 93.06 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 93.05 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 92.94 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 92.9 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 92.68 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 92.65 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 92.64 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 92.51 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.5 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 92.45 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 92.42 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 92.4 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 92.36 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 92.32 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.26 | |
| PLN02494 | 477 | adenosylhomocysteinase | 92.21 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 92.17 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.16 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.15 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 92.15 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 92.12 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 92.07 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 92.06 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.71 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 91.71 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 91.7 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 91.68 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 91.63 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.59 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.58 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 91.56 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 91.52 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 91.46 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 91.38 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 91.37 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 91.28 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 91.19 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 91.11 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 91.11 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 91.08 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 91.05 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 91.03 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 91.01 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 91.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 90.96 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.94 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 90.92 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 90.86 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.84 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 90.83 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 90.82 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 90.82 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 90.8 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 90.8 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 90.78 | |
| cd08267 | 319 | MDR1 Medium chain dehydrogenases/reductase (MDR)/z | 90.63 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.57 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 90.53 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 90.44 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 90.41 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 90.37 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 90.31 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.17 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 90.02 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 89.95 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.83 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 89.78 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 89.71 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 89.64 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 89.57 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 89.5 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 89.4 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 89.38 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 89.37 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 89.25 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 89.22 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 89.2 | |
| cd08264 | 325 | Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam | 89.15 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 89.04 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 89.03 | |
| cd08276 | 336 | MDR7 Medium chain dehydrogenases/reductase (MDR)/z | 89.01 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 88.96 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 88.93 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 88.92 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 88.88 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 88.87 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 88.85 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 88.84 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 88.84 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.78 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 88.73 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 88.7 | |
| PRK10310 | 94 | PTS system galactitol-specific transporter subunit | 88.56 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.54 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.51 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.46 | |
| PHA01634 | 156 | hypothetical protein | 88.44 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 88.38 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 88.29 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 88.25 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 88.21 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 88.21 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.2 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 88.19 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 88.17 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 88.11 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 88.06 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 88.01 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 87.99 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 87.97 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 87.9 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.83 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 87.79 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 87.76 | |
| PRK08643 | 256 | acetoin reductase; Validated | 87.59 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 87.56 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 87.52 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.4 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 87.24 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 86.84 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 86.75 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 86.73 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 86.65 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 86.64 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 86.59 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 86.54 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.5 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 86.42 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 86.38 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 86.31 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 86.21 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 86.16 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 86.1 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 86.1 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 85.86 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 85.85 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 85.84 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 85.81 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.79 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 85.76 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 85.75 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 85.72 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 85.66 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 85.64 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 85.63 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.54 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 85.52 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 85.5 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 85.45 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 85.44 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 85.3 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 85.29 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=285.36 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=158.5
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHH
Q 023974 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar 155 (274)
..|++ +++.||.+|...|+| .|+.|++.+++.+++.+|.+|| ||||||+++..+++..+ ++|+|+|+|+.||++|+
T Consensus 15 ~vF~~-ia~~YD~~n~~~S~g-~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~ 92 (238)
T COG2226 15 KVFDK-VAKKYDLMNDLMSFG-LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR 92 (238)
T ss_pred HHHHh-hHHHHHhhcccccCc-chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence 34555 566699999999998 8889999999999999999999 99999999999999865 89999999999999999
Q ss_pred HhCCC-----ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHH-Hhh
Q 023974 156 EKYDT-----VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQ-RKQ 227 (274)
Q Consensus 156 ~k~~~-----v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~-~~~ 227 (274)
+|..+ ++|++|||++|||+|++||+|+++|++||++|+++||+|++|||||||+++|.+... .+++... +.+
T Consensus 93 ~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~ 172 (238)
T COG2226 93 EKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILY 172 (238)
T ss_pred HHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHH
Confidence 99765 789999999999999999999999999999999999999999999999999954321 1122221 111
Q ss_pred C---------------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEE
Q 023974 228 F---------------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVL 267 (274)
Q Consensus 228 ~---------------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~ 267 (274)
+ ...++..||+++++.++++++||..+.|++--..-+++.
T Consensus 173 ~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~ 233 (238)
T COG2226 173 YFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALH 233 (238)
T ss_pred HHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEE
Confidence 1 112789999999999999999999888887655544443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=273.91 Aligned_cols=183 Identities=15% Similarity=0.120 Sum_probs=91.3
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
..+|+. ++..||.+|+..++| .|+.|++.+++.+...+|.+|| ||||||+++..+++. ++ ++|+|+|+|++||++
T Consensus 10 ~~~Fd~-ia~~YD~~n~~ls~g-~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 10 RKMFDR-IAPRYDRMNDLLSFG-QDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp -----------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHH-HHHHhCCCccccCCc-HHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 445665 566699999999998 8888999999999999999999 999999999999886 45 899999999999999
Q ss_pred HHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc---CCChhHHHHHH
Q 023974 154 IKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH---PQGREALQKQR 225 (274)
Q Consensus 154 Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~---~~gr~~l~~~~ 225 (274)
|++|. .++++++||+++||+++++||+|+++|++|+++|++++++|++|||||||+++|.+ |.+ ..+...+
T Consensus 88 a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~-~~~~~~~ 166 (233)
T PF01209_consen 88 ARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRN-PLLRALY 166 (233)
T ss_dssp HHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SS-HHHHHHH
T ss_pred HHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCC-chhhcee
Confidence 99874 37899999999999999999999999999999999999999999999999999943 332 2333332
Q ss_pred hhCc---------------------ccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 226 KQFP---------------------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 226 ~~~~---------------------~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..|. ..++.+||+.+++.++|+++||+.+.++.-...
T Consensus 167 ~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G 224 (233)
T PF01209_consen 167 KFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFG 224 (233)
T ss_dssp HH--------------------------------------------------------
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2221 127889999999999999999999888765444
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=251.74 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=164.9
Q ss_pred cccccccccccccCCCCCCCccc-cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHH
Q 023974 54 QLSLSTRKTSIGAASPPDEGTVS-VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVD 131 (274)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~ 131 (274)
..+..++.+.++-.+..+++..- +-..++.+++.||.+|++.+.| .|+.|.+..+..++...+.+|| ||||||+++.
T Consensus 38 ~~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlG-iHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaF 116 (296)
T KOG1540|consen 38 SLSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLG-IHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAF 116 (296)
T ss_pred ccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHhhhccCCCCCCeEEEecCCcchhHH
Confidence 44555666666665555544443 3334444677799999999998 9999999999999999999999 9999999999
Q ss_pred HHHHhC-C------CcEEEEeCcHHHHHHHHHhC---C-----CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHH
Q 023974 132 RVVESS-P------SLLLVVHDSLFVLAGIKEKY---D-----TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQV 196 (274)
Q Consensus 132 ~L~~~~-~------~~V~gVD~S~~ML~~Ar~k~---~-----~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~a 196 (274)
.+.+.. . .+|+++|++++||+++++|. + .+.|++||||+|||++++||+.+++|+++|+.+++++
T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296)
T KOG1540|consen 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296)
T ss_pred HHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHH
Confidence 987752 1 68999999999999999874 1 2789999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhhC---------------------cccccccCCCHHHHHHHHHhCCCcE
Q 023974 197 FETLANRCSPGARVVISHPQG--REALQKQRKQF---------------------PDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 197 l~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~~---------------------~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++|++|||||||||.|.+... ...+..++.+| ...|+..||+++|+..+.+++||..
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~ 276 (296)
T KOG1540|consen 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSS 276 (296)
T ss_pred HHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcc
Confidence 999999999999999954321 12333333222 2238999999999999999999988
Q ss_pred eE-EEecC
Q 023974 254 DN-FVDES 260 (274)
Q Consensus 254 v~-~~d~~ 260 (274)
+. |..--
T Consensus 277 ~~~ye~lt 284 (296)
T KOG1540|consen 277 VNGYENLT 284 (296)
T ss_pred ccccccce
Confidence 86 54433
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=235.49 Aligned_cols=191 Identities=14% Similarity=0.046 Sum_probs=153.6
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
..+|+. +++.||.++...+.+ .+..|.+.+++.+++.++++|| ||||||.++..+++. ++ ++|+|||+|++||+.
T Consensus 36 ~~~f~~-~A~~YD~~~~~~s~g-~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~ 113 (261)
T PLN02233 36 QALFNR-IAPVYDNLNDLLSLG-QHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAV 113 (261)
T ss_pred HHHHHH-hhhHHHHhhhhhcCC-hhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 445555 666699988877666 4556888888888889999999 999999999988876 45 799999999999999
Q ss_pred HHHhC--------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHH
Q 023974 154 IKEKY--------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQK 223 (274)
Q Consensus 154 Ar~k~--------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~ 223 (274)
|+++. ++++++++|++++|+++++||+|++++++++++|+.++++|++|+|||||+++|.+... ......
T Consensus 114 A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~ 193 (261)
T PLN02233 114 AASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTS 193 (261)
T ss_pred HHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHH
Confidence 98763 36899999999999999999999999999999999999999999999999999975321 111111
Q ss_pred HHhh--------------------CcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023974 224 QRKQ--------------------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 224 ~~~~--------------------~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
+... |...++..|++.+|+.++++++||+++.+.+-......++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 194 MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 1110 111256779999999999999999999888877666665543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=212.38 Aligned_cols=186 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGE--IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
..+|+. +++.||.+|...++| .+..|++.+++.+. ..++.+|| ||||||.++..+++....+|+|+|+|++||++
T Consensus 12 ~~~f~~-iA~~YD~~n~~~s~g-~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 12 QEAYNK-IPKAYDRANRFISFN-QDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred HHHHHh-hhHHHHHhhhhccCC-CcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 445665 666699999988887 55678888877652 24578999 99999999999988733599999999999999
Q ss_pred HHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEEEcCCChhHHHHHHhhC----
Q 023974 154 IKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVISHPQGREALQKQRKQF---- 228 (274)
Q Consensus 154 Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvIs~~~gr~~l~~~~~~~---- 228 (274)
|+++. .++++|++++|+++++||+|++++++||+.|++++++|++|+|||++ .+-++.|.+. ....+...|
T Consensus 90 a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~~~p~~~-~~~~~~~~y~~~~ 165 (226)
T PRK05785 90 NLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAMGKPDNV-IKRKYLSFYLRYI 165 (226)
T ss_pred HHhcc---ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEEeCCCCcH-HHHHHHHHHHHHH
Confidence 99874 46799999999999999999999999999999999999999999953 3333444322 222221111
Q ss_pred -----------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCe--EEEEEEe
Q 023974 229 -----------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF--YLVVLKF 269 (274)
Q Consensus 229 -----------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~--yl~v~~~ 269 (274)
...++..||+++++.++++++| ..+.++..... ++.+++|
T Consensus 166 ~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 166 MPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 1227899999999999999974 66788776655 3444444
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=205.38 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=154.3
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
+..+.+.++..||..+...+.+ .+..|++.+++.+.+.++++|| +|||||.++..+++. ++ ++|+|+|+|++|++.
T Consensus 7 ~~~~f~~~a~~yd~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~ 85 (231)
T TIGR02752 7 VHKVFEKIYKKYDRMNSVISFQ-RHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSV 85 (231)
T ss_pred HHHHHHHhhhHHhHHHHHhcCC-chHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4566677888899998876665 6777889999999999999999 999999999999876 45 799999999999999
Q ss_pred HHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHh
Q 023974 154 IKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRK 226 (274)
Q Consensus 154 Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~ 226 (274)
|+++. ++++++++|++++|+.+++||+|++++.+++.+++.++++++.|+|||||++++.+.... ..+.....
T Consensus 86 a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~ 165 (231)
T TIGR02752 86 GRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYF 165 (231)
T ss_pred HHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHH
Confidence 99764 468999999999999899999999999999999999999999999999999998653221 11121110
Q ss_pred h---------------------CcccccccCCCHHHHHHHHHhCCCcEeEEEecC--CeEEEEEEe
Q 023974 227 Q---------------------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES--GFYLVVLKF 269 (274)
Q Consensus 227 ~---------------------~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~--~~yl~v~~~ 269 (274)
. +....+..||+.+++.++++++||+++.++.-. ..+++|++|
T Consensus 166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 166 FYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0 111245679999999999999999988777644 345566554
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=192.59 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=124.5
Q ss_pred HHHHHHHHhCCC-----CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 103 QRIDQIISAGEI-----DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 103 ~w~~~ll~~~~~-----~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
..+..+++.+++ .++.+|| ||||+|.++..|+++...+|+|||+|+.|++.|+++. ++++|+++|+++
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 356677888887 7889999 9999999999998864469999999999999998752 358999999999
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh------hH--------HHHHHhhCcccccccC
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR------EA--------LQKQRKQFPDVIVSDL 236 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr------~~--------l~~~~~~~~~~si~~f 236 (274)
+|+.+++||+|++...++++.|+.++++|++|+|||||+|+|.+...+ .. +..+...+ ....+
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~---~~p~~ 256 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAY---YLPAW 256 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhc---cCCCC
Confidence 999999999999999999989999999999999999999999643211 00 01111111 12234
Q ss_pred CCHHHHHHHHHhCCCcEeEEEecC
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
.+.+++.++++++||+++...|-.
T Consensus 257 ~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 257 CSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCHHHHHHHHHHCCCCeeEeeeCc
Confidence 589999999999999998887644
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=185.96 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCc
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sF 178 (274)
.+....+.+++.+...++.+|| +|||||.++..|.+.+ .+|+|+|+|++|++.|+++.+...++++|++++|+.+++|
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 4455667788877766778999 9999999999987765 5999999999999999999887889999999999999999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc----ccccccCCCHHHHHHHHHhCCCc
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP----DVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~----~~si~~fps~~eL~~ll~~aGF~ 252 (274)
|+|++++.++|..|+.+++.++.|+|||||+++++.+.. ..+.+++..+. ..+...|++.+++..++++.|+.
T Consensus 105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~-~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 181 (251)
T PRK10258 105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ-GSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQ 181 (251)
T ss_pred EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC-CchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCce
Confidence 999999999999999999999999999999999985432 33444443332 22457799999999999988875
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=185.61 Aligned_cols=152 Identities=10% Similarity=0.147 Sum_probs=122.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
....+++.+...++.+|| ||||||.++..++++.| .+|+|+|+|+.|++.|+++ +++++++|+++++ .+++||+|
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~-~~~~fD~v 93 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRDWK-PKPDTDVV 93 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhhCC-CCCCceEE
Confidence 557888888888999999 99999999999988866 7999999999999999875 6899999999986 56899999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHH--hhCcc-------cccccCCCHHHHHHHHH
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG-----REALQKQR--KQFPD-------VIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~--~~~~~-------~si~~fps~~eL~~ll~ 247 (274)
+++++++|+.|+++++++++|+|||||+++|..+.. ........ ..|.. .....+.+.+++.++++
T Consensus 94 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 94 VSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred EEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999964321 11111111 11211 01235778999999999
Q ss_pred hCCCcEeEEEe
Q 023974 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
++||++..++.
T Consensus 174 ~aGf~v~~~~~ 184 (255)
T PRK14103 174 DAGCKVDAWET 184 (255)
T ss_pred hCCCeEEEEee
Confidence 99998665543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=187.38 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=127.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCCCCCCcc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf~~~sFD 179 (274)
..+.+++.+++.++.+|| ||||+|..+..+++....+|+|+|+|++|++.|+++.. ++.+.++|++++|+.+++||
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 477888889999999999 99999999988876543699999999999999998854 58999999999999999999
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh---hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR---EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr---~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++...+.+.. ++.+++++++|+|||||+|+|++.... .+........ ......+++.+++.++++++||+++
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGF~~v 198 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYI-KKRKYTLIPIQEYGDLIKSCNFQNV 198 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHH-HhcCCCCCCHHHHHHHHHHCCCCee
Confidence 999976655543 889999999999999999999764221 1111221111 1112457899999999999999999
Q ss_pred EEEecCCeE
Q 023974 255 NFVDESGFY 263 (274)
Q Consensus 255 ~~~d~~~~y 263 (274)
.+.|-..+|
T Consensus 199 ~~~d~~~~~ 207 (263)
T PTZ00098 199 VAKDISDYW 207 (263)
T ss_pred eEEeCcHHH
Confidence 998866554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=189.06 Aligned_cols=179 Identities=13% Similarity=0.009 Sum_probs=135.9
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~ 153 (274)
+..|+. .+..||..... +.....+++.+++...+ .++.+|| ||||||.++..+++..+ .+|+|+|+|++|++.
T Consensus 77 ~~~y~~-lA~~YD~~~~~---~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~ 152 (340)
T PLN02490 77 FWFYRF-LSIVYDHIINP---GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK 152 (340)
T ss_pred eeEccc-eeeecCCCeec---CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 444444 45558864332 22223355667776655 4678999 99999999888877644 789999999999999
Q ss_pred HHHhC--CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhCcc
Q 023974 154 IKEKY--DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR-EALQKQRKQFPD 230 (274)
Q Consensus 154 Ar~k~--~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~~~ 230 (274)
|+++. .+++++++|++++|+.+++||+|+++..+++..|++++++|++|+|||||+++|..+... .+..+. +.+
T Consensus 153 A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~---~~~ 229 (340)
T PLN02490 153 AKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF---FAD 229 (340)
T ss_pred HHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH---hhh
Confidence 99875 478999999999999999999999999999999999999999999999999988643221 122211 111
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 231 VIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.-..+++.+|+.++++++||+.+++++....|
T Consensus 230 -~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 230 -VWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred -hhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 11246899999999999999999988855553
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=186.34 Aligned_cols=179 Identities=9% Similarity=0.029 Sum_probs=130.3
Q ss_pred cccccccccccccccccCC---ccchhHHHHHHHHH-HhC-------CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEE
Q 023974 77 VVNFEDFTEIDWSFLDSDE---LNFKEHIQRIDQII-SAG-------EIDESSKVL-VSISSEEFVDRVVESSPSLLLVV 144 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~---~~~~~~~~w~~~ll-~~~-------~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gV 144 (274)
+..|++..+.-||...... .+......++++.+ +.+ ...++.+|| ||||+|.++..|++.+ .+|+||
T Consensus 81 ~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g-~~V~GI 159 (322)
T PLN02396 81 LAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMG-ATVTGV 159 (322)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcC-CEEEEE
Confidence 7788888887667533211 01111222333332 111 234677999 9999999999998765 599999
Q ss_pred eCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 145 HDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 145 D~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|+|++|++.|+++. .+++++++|++++|+.+++||+|++..+++|+.|++++++++.|+|||||+++|+.....
T Consensus 160 D~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 160 DAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred eCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 99999999999763 258899999999999889999999999999999999999999999999999999855321
Q ss_pred --hHHHHH-----HhhC-cc-cc-cccCCCHHHHHHHHHhCCCcEeEE
Q 023974 219 --EALQKQ-----RKQF-PD-VI-VSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 219 --~~l~~~-----~~~~-~~-~s-i~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
.+.... ...+ .. .+ -..|.+++|+.++++++||+++..
T Consensus 240 ~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 240 MRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 111111 1111 11 11 235899999999999999988764
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-22 Score=178.31 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=134.4
Q ss_pred cccccccccccccccCCccchhHHHH----HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023974 79 NFEDFTEIDWSFLDSDELNFKEHIQR----IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w----~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
+||++.++ ++...+....|.....- +..+++.+. .++.+|| +|||||.++..|++.+ .+|+|+|+|++|++.
T Consensus 5 ~fd~~a~~-f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~ 81 (255)
T PRK11036 5 NFDDIAEK-FSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQR 81 (255)
T ss_pred ChhhHHHH-HHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHH
Confidence 68885555 88888777776544332 234566655 4567999 9999999999998876 599999999999999
Q ss_pred HHHhC------CCceEEEeeccCCC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH-HHHH-
Q 023974 154 IKEKY------DTVKCWQGELIYVP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA-LQKQ- 224 (274)
Q Consensus 154 Ar~k~------~~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~-l~~~- 224 (274)
|+++. ++++++++|+++++ +.+++||+|++..+++++.++.+++++++|+|||||+++|........ +...
T Consensus 82 a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~ 161 (255)
T PRK11036 82 AKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMV 161 (255)
T ss_pred HHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHH
Confidence 99863 35789999999885 667899999999999999999999999999999999999864322111 1111
Q ss_pred -------HhhCc-----ccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 225 -------RKQFP-----DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 225 -------~~~~~-----~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..... ........+++++.++++++||+++.+.--..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~ 211 (255)
T PRK11036 162 AGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVF 211 (255)
T ss_pred ccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEE
Confidence 01111 001233457899999999999998866554333
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=168.82 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=145.4
Q ss_pred cccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHH
Q 023974 79 NFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar 155 (274)
+|+.+.++ ||..+.....+ .+..|+..+++.+...++.+|| +|||+|.++..+++..+ .+++|+|+++.|++.++
T Consensus 4 ~~~~~~~~-y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 4 MFDRIAPK-YDLLNDLLSFG-LHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HHHHHHhh-hhHHHHHHhcc-cHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 46665555 88877654444 4567888888888887889999 99999999999988765 58999999999999999
Q ss_pred HhCC---CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhC--
Q 023974 156 EKYD---TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQF-- 228 (274)
Q Consensus 156 ~k~~---~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~-- 228 (274)
++.+ ++.++.+|+.++|+.+++||+|++++++++..++..+++++.+.|||||++++.+.... ..+......+
T Consensus 82 ~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~ 161 (223)
T TIGR01934 82 KKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLK 161 (223)
T ss_pred HHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHH
Confidence 8864 68999999999998888999999999999999999999999999999999998543211 1111111110
Q ss_pred ----------c---------ccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEE
Q 023974 229 ----------P---------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 229 ----------~---------~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
. ..+...+++.+++.++++++||+++..+........+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~ 218 (223)
T TIGR01934 162 NVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAI 218 (223)
T ss_pred HhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeE
Confidence 0 0122457899999999999999988888777665333
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=169.80 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=145.8
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHH
Q 023974 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGI 154 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~A 154 (274)
.+|+++ +..||..+.....+ .+..|+..++..+...++.+|| +|||+|.++..++...+ .+++|+|+++.|++.+
T Consensus 15 ~~~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 92 (239)
T PRK00216 15 EMFDSI-APKYDLMNDLLSFG-LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVG 92 (239)
T ss_pred HHHHHh-hhhHHHHHHHHhcC-CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Confidence 356664 45588655433333 4556888888888888889999 99999999999988764 7999999999999999
Q ss_pred HHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHh
Q 023974 155 KEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRK 226 (274)
Q Consensus 155 r~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~ 226 (274)
+++. .++.+..+|+.++++.+++||+|++++++++..++...++++.++|+|||++++.+... ...+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~ 172 (239)
T PRK00216 93 REKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYD 172 (239)
T ss_pred HHhhcccccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHH
Confidence 9874 35789999999999888999999999999999999999999999999999998853211 111111110
Q ss_pred hC---------------------cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023974 227 QF---------------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 227 ~~---------------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
.+ ...++..+++.+++.++++++||+++..+.....++.|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 236 (239)
T PRK00216 173 FYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVG 236 (239)
T ss_pred HHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEE
Confidence 00 00123568899999999999999999888876666665544
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=174.29 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=130.8
Q ss_pred ccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE
Q 023974 88 WSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ 165 (274)
Q Consensus 88 Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~ 165 (274)
||.-.+.. +......+.+.+++.+.+.++.+|| ||||||.++..+++..+ .+|+|||+|+.|++.|+++.+++.++.
T Consensus 4 w~~~~Y~~-~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~ 82 (258)
T PRK01683 4 WNPSLYLK-FEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE 82 (258)
T ss_pred CCHHHHHH-HHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE
Confidence 66433321 3334445778889888889999999 99999999999988766 799999999999999999999999999
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh-----HHHHH------HhhCccc--c
Q 023974 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE-----ALQKQ------RKQFPDV--I 232 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~-----~l~~~------~~~~~~~--s 232 (274)
+|+++++ .+++||+|++++.++|+.|+.+++++++++|||||++++..+.... .+.+. ...+... .
T Consensus 83 ~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 161 (258)
T PRK01683 83 ADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGAR 161 (258)
T ss_pred CchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhcccccc
Confidence 9998876 4579999999999999999999999999999999999996432211 11111 1111111 1
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 233 VSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
...+|+.+++.+++.++|+.+..+.
T Consensus 162 ~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 162 RAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred CcCCCCHHHHHHHHHhCCCceeeee
Confidence 2457899999999999999764433
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-22 Score=149.11 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=82.0
Q ss_pred E-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023974 121 L-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
| +|||+|..+..|++....+|+|+|+|++|++.++++... +.++++|++++|+++++||+|++...++++.++++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l 80 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAAL 80 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHH
Confidence 7 999999999999988337999999999999999998753 5699999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCEEEE
Q 023974 198 ETLANRCSPGARVVI 212 (274)
Q Consensus 198 ~el~RvLKPGGrlvI 212 (274)
+|+.|+|||||+++|
T Consensus 81 ~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 81 REIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHEEEEEEEEE
T ss_pred HHHHHHcCcCeEEeC
Confidence 999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=170.55 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=116.3
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEe
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
..+.++++|| ||||+|..+..+++. ++ ++|+|+|+|++|++.|+++ ++++++.++|++++|+.+++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 5678999999 999999887766654 45 6899999999999999975 35789999999999998899999999
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh----HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE----ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~----~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+.++++..++.+++++++|+|||||+|++.+..... .+......+.. ......+.+++.++++++||..+.....
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 999999999999999999999999999996432211 11111111211 2334567899999999999988766443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=175.59 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h----CCCceEEEeeccCCCCCCCCc
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k----~~~v~~~~gDae~LPf~~~sF 178 (274)
..++..+...++.+|| ||||+|.++..+++.++..|+|||+|+.|+.+++. + .+++.++.+|++++|+ +++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 3455566655778999 99999999999988877679999999999987542 2 2368999999999998 8999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHH-HHhhCccc-ccccCCCHHHHHHHHHhCCCcEe
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQK-QRKQFPDV-IVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~-~~~~~~~~-si~~fps~~eL~~ll~~aGF~~v 254 (274)
|+|+|..+++|..|+..++++++|+|||||++++.+.. +...... -...|... .+..+|+.+++.++++++||+++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 99999988888899999999999999999999985321 1110000 00111111 12346899999999999999999
Q ss_pred EEEecCCe
Q 023974 255 NFVDESGF 262 (274)
Q Consensus 255 ~~~d~~~~ 262 (274)
..++....
T Consensus 271 ~~~~~~~t 278 (322)
T PRK15068 271 RIVDVSVT 278 (322)
T ss_pred EEEeCCCC
Confidence 98876554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=183.96 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=125.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCcc
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD 179 (274)
...+++.+.+.++.+|| ||||+|.++..|++....+|+|+|+|++|++.|+++.. +++|.++|+.++|+++++||
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 45677777788889999 99999999988877644689999999999999987642 57899999999999889999
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh--HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE--ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~--~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
+|++..++.|+.|+++++++++|+|||||+++|.+..... ........+.. ....+++.+++.++++++||+++.+.
T Consensus 335 ~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 335 VIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQ-RGYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred EEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHh-cCCCCCCHHHHHHHHHHCCCeeeeee
Confidence 9999999999999999999999999999999997542110 00111111111 12357889999999999999998877
Q ss_pred ecCCeE
Q 023974 258 DESGFY 263 (274)
Q Consensus 258 d~~~~y 263 (274)
+-.+.|
T Consensus 414 d~~~~~ 419 (475)
T PLN02336 414 DRTDQF 419 (475)
T ss_pred cchHHH
Confidence 644433
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=174.72 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=119.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h----CCCceEEEeeccCCCCCCCCc
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k----~~~v~~~~gDae~LPf~~~sF 178 (274)
.+++..+...++.+|| ||||||.++..++..++..|+|||+|+.|+++++. + ...+.+..++++++|+. ++|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 3566667777889999 99999999988887776689999999999987542 2 23578889999999974 589
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--Chh--H--HHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GRE--A--LQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~--~--l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
|+|++..++.|..++..+|++++|+|||||+|++.+.. +.. . ....+.... .+..+|+.+++.++++++||+
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~--nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMK--NVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcc--ccccCCCHHHHHHHHHHCCCe
Confidence 99999998999999999999999999999999986421 110 0 001111111 233578999999999999999
Q ss_pred EeEEEecCCe
Q 023974 253 IDNFVDESGF 262 (274)
Q Consensus 253 ~v~~~d~~~~ 262 (274)
.++..+....
T Consensus 268 ~V~i~~~~~t 277 (314)
T TIGR00452 268 NFRILDVLKT 277 (314)
T ss_pred EEEEEeccCC
Confidence 9988875543
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-21 Score=161.57 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=96.9
Q ss_pred EEEeCcHHHHHHHHHhC--------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 142 LVVHDSLFVLAGIKEKY--------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 142 ~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|||+|++||++|++|. .+++|++||++++|+.+++||+|++.++++++.|+.++++|++|+|||||+|+|.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 58999999999998763 2589999999999999999999999999999999999999999999999999986
Q ss_pred cCCCh-hHHHH-H------------------HhhC--cccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 214 HPQGR-EALQK-Q------------------RKQF--PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 214 ~~~gr-~~l~~-~------------------~~~~--~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+.... ..+.. . ...| ...++..||+.+++.++++++||+.+.+..-...
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 53211 11110 0 0111 1226788999999999999999998887665544
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=169.25 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=104.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEe
Q 023974 114 IDESSKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++.+|| ||||||.++..+++. .+ .+|+|||+|++|++.|+++.. +++++++|++++|+. .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 45778999 999999999888773 35 799999999999999998742 589999999999874 4999999
Q ss_pred cccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCC---Ch---hHHHHHH------hhCcc--c-------ccccCC-CH
Q 023974 184 YFLPAMPFP--LDQVFETLANRCSPGARVVISHPQ---GR---EALQKQR------KQFPD--V-------IVSDLP-DQ 239 (274)
Q Consensus 184 ~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~---gr---~~l~~~~------~~~~~--~-------si~~fp-s~ 239 (274)
+++++++.+ +.+++++++|+|||||.|++++.. +. ..+...+ ..|.. + ....+| +.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 999888753 458999999999999999997521 10 1111111 11111 0 011233 79
Q ss_pred HHHHHHHHhCCCcEe
Q 023974 240 MTLQKAAGNHCFQID 254 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v 254 (274)
++..++++++||+.+
T Consensus 212 ~~~~~~L~~aGF~~v 226 (247)
T PRK15451 212 ETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHcCchhH
Confidence 999999999999654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=157.44 Aligned_cols=154 Identities=17% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~ 176 (274)
.++.+++.+.+.++.+|| +|||||.++..+++.. + ++|+|+|+|+.|++.|+++ .+++.+.++|++++|+.++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~ 86 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDG 86 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCC
Confidence 455677788899999999 9999999999998874 5 7999999999999999987 3568999999999999999
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC---------hhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG---------REALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g---------r~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
+||+|++...+++..|+..++++++++|||||++++..+.. ...+.+....+.. .........++.++++
T Consensus 87 ~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 165 (241)
T PRK08317 87 SFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFADPWLGRRLPGLFR 165 (241)
T ss_pred CceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999865321 1122333333221 1223334578999999
Q ss_pred hCCCcEeEEEe
Q 023974 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
++||.++....
T Consensus 166 ~aGf~~~~~~~ 176 (241)
T PRK08317 166 EAGLTDIEVEP 176 (241)
T ss_pred HcCCCceeEEE
Confidence 99998765533
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=155.58 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=109.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
..++.+|| ||||+|.++..+++.+. +|+|+|+|+.|++. ..+.....+.+..+..+++||+|+++.+++++.|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 67888999 99999999999977765 99999999999998 4455556666677778899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhC-ccc--ccccCCCHHHHHHHHHhCCCcEeE
Q 023974 193 LDQVFETLANRCSPGARVVISHPQGR-EALQKQRKQF-PDV--IVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~-~~~--si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+.++++++.++|||||+++|..+... .......... ... ....+.+.+++.++++++||++++
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999999999999999876532 2222222211 111 223677999999999999999875
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=161.43 Aligned_cols=140 Identities=15% Similarity=0.110 Sum_probs=107.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEe
Q 023974 114 IDESSKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++.+|| ||||||.++..+++. .+ .+|+|+|+|++||+.|+++.. +++++++|++++|+. .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 35778999 999999999988875 24 789999999999999998732 478999999999875 5899999
Q ss_pred cccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCC---h---hHHHHHHhhCc------c----------cccccCCCH
Q 023974 184 YFLPAMPF--PLDQVFETLANRCSPGARVVISHPQG---R---EALQKQRKQFP------D----------VIVSDLPDQ 239 (274)
Q Consensus 184 ~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~g---r---~~l~~~~~~~~------~----------~si~~fps~ 239 (274)
++.++++. ++.+++++++|+|||||+++|+++.. . ..+.+++..+. . .......+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 99999875 45789999999999999999986422 1 11122211110 0 023456789
Q ss_pred HHHHHHHHhCCCcEeE
Q 023974 240 MTLQKAAGNHCFQIDN 255 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v~ 255 (274)
+++.++++++||..+.
T Consensus 209 ~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 209 ETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHcCCchHH
Confidence 9999999999997543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=157.16 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
..+.+|| ||||+|.++..+++.++ .+++|+|+|++|++.++++.+ ++.++++|++++|+.+++||+|++..++++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~ 112 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD 112 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence 3446899 99999999999988876 789999999999999998865 68999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
|+.+++.++.++|||||++++..+... .+.+....+.. ....|++.+++.++++++ |..+.+..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPG-TLHELRQSFGQ-HGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCcc-CHHHHHHHHHH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 999999999999999999999755332 22333222211 335688889999999888 87665544
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=154.91 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=108.1
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh----CC-CcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCCCCCCccEEEec
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVES----SP-SLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~----~~-~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
...++.+|| ||||||.++..|++. ++ .+|+|+|+|++|++.|+++. +++++.+++++++++.+++||+|+++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 345678999 999999998888652 34 58999999999999999885 46888899999999888999999999
Q ss_pred ccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChh-HHHHH----H----hhC----cccccccCCCHHHHHHHHHhC
Q 023974 185 FLPAMPFPL--DQVFETLANRCSPGARVVISHPQGRE-ALQKQ----R----KQF----PDVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 185 f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~-~l~~~----~----~~~----~~~si~~fps~~eL~~ll~~a 249 (274)
+++||+.|. .+++++++|++| |.++|.+..... ..... . ..+ ...++.++++.+|+.+++++
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~- 213 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ- 213 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-
Confidence 999999875 479999999998 666676433211 10000 0 001 11366789999999999999
Q ss_pred CCcEeE
Q 023974 250 CFQIDN 255 (274)
Q Consensus 250 GF~~v~ 255 (274)
||++..
T Consensus 214 Gf~~~~ 219 (232)
T PRK06202 214 GWRVER 219 (232)
T ss_pred CCeEEe
Confidence 998654
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=150.22 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCCeEE-EEcCchHHHHHHHH-hCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEec
Q 023974 115 DESSKVL-VSISSEEFVDRVVE-SSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~-~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~ 184 (274)
.++.+|| +|||||.++..|++ .++ .+++|||+|++|++.|+++ +++++|.++|+++++ +. +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 4578999 99999999999994 455 8999999999999999984 457999999999988 65 899999999
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh----HHHHHHhhCcccccccCC---CHHHHHHHHHhCC
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE----ALQKQRKQFPDVIVSDLP---DQMTLQKAAGNHC 250 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~----~l~~~~~~~~~~si~~fp---s~~eL~~ll~~aG 250 (274)
.++++..++..+++++.|+|||||++++.+..... .+.+....+.. ...... +.+++..+++++|
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ag 152 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSE-VWSMIYIGNDKEEWKYILEEAG 152 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHH-HHHHCC---CCCGHHHHHHHTT
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHH-HhhhhhcccCHHHHHHHHHhcC
Confidence 88899999999999999999999999997654211 11111121111 122222 7788999999887
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-19 Score=142.28 Aligned_cols=99 Identities=22% Similarity=0.260 Sum_probs=82.7
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecc-c
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYF-L 186 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f-~ 186 (274)
|+.+|| ||||||.++..+++..+ .+|+|||+|++|++.|+++. ++++++++|+...+...+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 578999 99999999999998544 79999999999999999886 578999999933333456799999987 4
Q ss_pred CcCC---CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 187 PAMP---FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 187 l~~~---~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.++. .+.+++++++.+.|||||+++|..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4322 456899999999999999999963
|
... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=148.43 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=121.4
Q ss_pred cccccccCCccchhHHHHHHHHHHhC----CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---
Q 023974 87 DWSFLDSDELNFKEHIQRIDQIISAG----EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--- 157 (274)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~w~~~ll~~~----~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--- 157 (274)
.|.......+-...+..|.+.+++.+ .++++.+|| +|||||.++..+++..+ .+|+|+|.|++|++.|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~ 91 (187)
T PRK00107 12 KWNKKYNLTAIRDPEELWERHILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE 91 (187)
T ss_pred HhcccccccccCCHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 37766666555556667887776655 234588999 99999999998887665 8999999999999999875
Q ss_pred --CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccccccc
Q 023974 158 --YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSD 235 (274)
Q Consensus 158 --~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~ 235 (274)
.++++++++|+++++. +++||+|++.. ..+++.++++++++|||||++++.+..+.
T Consensus 92 ~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~----------------- 149 (187)
T PRK00107 92 LGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDP----------------- 149 (187)
T ss_pred cCCCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh-----------------
Confidence 3458999999999987 78999999874 35788999999999999999999754321
Q ss_pred CCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEe
Q 023974 236 LPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKF 269 (274)
Q Consensus 236 fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~ 269 (274)
..++..+.++.|+.+..... +....+.|+||
T Consensus 150 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 150 ---EEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred ---HHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEec
Confidence 24577777888986444322 22445777776
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-18 Score=151.93 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=125.8
Q ss_pred cccccccccccccccc-------CCcc-chhHHHHHHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeC
Q 023974 78 VNFEDFTEIDWSFLDS-------DELN-FKEHIQRIDQIISAGE--IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHD 146 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~-------~~~~-~~~~~~w~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~ 146 (274)
..|++....+|+.+.. ..+. ...+..+++.+++.+. ..++.+|| +|||+|.++..+++.+ .+|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~ 85 (219)
T TIGR02021 7 HYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDI 85 (219)
T ss_pred HHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC-CEEEEEEC
Confidence 3566654444554443 2221 1234456667777766 56788999 9999999999998765 49999999
Q ss_pred cHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 147 SLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 147 S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|++|++.|+++.+ ++.|.++|+++++ ++||+|++...+.+.+ ++..+++++.+++++|+.+.+. +.+.
T Consensus 86 s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~ 161 (219)
T TIGR02021 86 SEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTA 161 (219)
T ss_pred CHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCch
Confidence 9999999998752 5789999999887 7899999987765543 4678999999999977666654 3322
Q ss_pred hH--HHHHHhhCcc---cccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023974 219 EA--LQKQRKQFPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 219 ~~--l~~~~~~~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
.. ...+...+.. .....+++.+++.++++++||+++..+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 162 WLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccc
Confidence 11 1111222221 1224567899999999999999887765443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=149.68 Aligned_cols=141 Identities=9% Similarity=0.052 Sum_probs=107.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+++.+...++.+|| +|||+|.++..|++++ .+|+|+|+|++|++.|+++. .++++.++|+.++++ +++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence 445556666778999 9999999999998876 49999999999999998752 457888999998887 467999
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC-ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ-GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~-gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
|+++.++++.. ++.+++++++|+|||||++++.... .... .... ......+.+|+.+.++ ||+++.+.
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~------~~~~-~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY------PCTV-GFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC------CCCC-CCCCccCHHHHHHHhC--CCeEEEee
Confidence 99998887754 5679999999999999996553221 1110 0000 1122347889998887 89988875
Q ss_pred e
Q 023974 258 D 258 (274)
Q Consensus 258 d 258 (274)
+
T Consensus 170 ~ 170 (197)
T PRK11207 170 E 170 (197)
T ss_pred C
Confidence 4
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=152.08 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=113.1
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+|| ||||+|.++..+++..+ .+|+|+|+|++|++.|+++.+ ++++..+|+++.|+. ++||+|++...+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 3799 99999999999988765 799999999999999998742 478999999877764 58999999888888
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
+.++...+++++++|||||++++.+...... .. .........+++.+++.++++++||+++...+-...|
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~---~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLL-SA---IEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccC-cc---ccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 8999999999999999999999975431110 00 0001122347899999999999999999888766554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=152.06 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=83.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC----CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP----SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~----~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
..+.+|| +|||||.++..+++..+ ..|+|+|+|++|++.|+++.+++.+.++|++++|+.+++||+|++.+...
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~- 162 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPC- 162 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCC-
Confidence 4557899 99999999999877643 36999999999999999999999999999999999999999999876532
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.++|++|+|||||+|++..+..
T Consensus 163 ------~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 163 ------KAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ------CHHHHHhhccCCCEEEEEeCCC
Confidence 3689999999999999976643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=147.09 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=105.6
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCC----CCCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYV----PDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~L----Pf~~~sFD~ 180 (274)
+.+.+.++++|| +|||||.++..+++..+ ++|+|+|.+++||+.++++ .+++.++.+|+.+. ++ .++||+
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCE
Confidence 457889999999 99999999999988754 7999999999999866544 36799999998752 22 357999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
|++.... ......+++++.|+|||||+++|+-+. +. . .+.. ..... .++..++++++||+.+...+-.
T Consensus 145 i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~----~--d~~~-~~~~~--~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 145 IYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLLAIKA-RS----I--DVTK-DPKEI--FKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred EEECCCC--hhHHHHHHHHHHHhcCCCcEEEEEEec-cc----c--cCcC-CHHHH--HHHHHHHHHHcCCeEEEEEcCC
Confidence 9965321 112245689999999999999995111 10 0 0000 00000 1344589999999999998843
Q ss_pred ----CeEEEEEEe
Q 023974 261 ----GFYLVVLKF 269 (274)
Q Consensus 261 ----~~yl~v~~~ 269 (274)
++|++|+++
T Consensus 213 p~~~~h~~~v~~~ 225 (226)
T PRK04266 213 PYHKDHAAVVARK 225 (226)
T ss_pred CCcCCeEEEEEEc
Confidence 479999886
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=145.97 Aligned_cols=180 Identities=12% Similarity=0.032 Sum_probs=128.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar 155 (274)
..+|+.+..+.||.......+.......+..+.......++.+|| ||||+|.++..+.+.+ .+|+++|++++|++.|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~ 87 (233)
T PRK05134 9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVAR 87 (233)
T ss_pred HHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHH
Confidence 456777777777765543222111112233333444456788999 9999999998887765 58999999999999998
Q ss_pred HhCC----CceEEEeeccCCC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH--HHHH----
Q 023974 156 EKYD----TVKCWQGELIYVP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA--LQKQ---- 224 (274)
Q Consensus 156 ~k~~----~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~--l~~~---- 224 (274)
++.. .+.+.++|+.+++ ..++.||+|++...+.+..++..+++++.++|+|||+++++.+..... ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~ 167 (233)
T PRK05134 88 LHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAE 167 (233)
T ss_pred HHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHH
Confidence 7632 4678889998876 345899999999989999999999999999999999999975432111 0000
Q ss_pred -HhhC-c--ccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 225 -RKQF-P--DVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 225 -~~~~-~--~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
...+ . ......+++.+++.++++++||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 168 YVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred HHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 0000 0 0123458899999999999999977653
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-17 Score=139.77 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=105.2
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-C-CCCCCCccEEEecccCcCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-V-PDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-L-Pf~~~sFD~V~~~f~l~~~~ 191 (274)
.++++|| ||||+|.++..+++.....++|+|+|++|++.|+++ +++++++|+++ + ++.+++||+|+++.+++++.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 4678999 999999999988765445789999999999999764 57899999976 5 47789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH---h-h----------CcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQR---K-Q----------FPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~---~-~----------~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
|+.++++++.|+++ .++|+.+.-..+..... . . |.+.....|.+.+++.++++++||+++...
T Consensus 90 d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 90 NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEE
Confidence 99999999988765 45555333211111110 0 0 111122458899999999999999987654
Q ss_pred e
Q 023974 258 D 258 (274)
Q Consensus 258 d 258 (274)
-
T Consensus 167 ~ 167 (194)
T TIGR02081 167 A 167 (194)
T ss_pred E
Confidence 4
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=151.29 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=118.8
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHH----HHHHH
Q 023974 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLF----VLAGI 154 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~----ML~~A 154 (274)
....|.|+.+-+-+.- .+-.-++.+.+.++++|| +|||||.++..+++. ++ +.|+|||+|++ |+++|
T Consensus 104 ~~eyR~w~p~rSKlaa------~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAA------AIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred cceeeeeCCcccHHHH------HHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 4568889985443211 122335667889999999 999999999999887 44 79999999987 55655
Q ss_pred HHhCCCceEEEeeccC---CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccc
Q 023974 155 KEKYDTVKCWQGELIY---VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDV 231 (274)
Q Consensus 155 r~k~~~v~~~~gDae~---LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~ 231 (274)
+++ +++.++++|+.. ++...++||+|++... .+.+.+.++.++.|+|||||+|+|.. ..+
T Consensus 178 k~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~------------- 240 (293)
T PTZ00146 178 KKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISI-KAN------------- 240 (293)
T ss_pred hhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEE-ecc-------------
Confidence 544 789999999864 2223468999998864 23344566679999999999999951 111
Q ss_pred ccccCCCHHHH----HHHHHhCCCcEeEEEe----cCCeEEEEEEecCCC
Q 023974 232 IVSDLPDQMTL----QKAAGNHCFQIDNFVD----ESGFYLVVLKFSKSK 273 (274)
Q Consensus 232 si~~fps~~eL----~~ll~~aGF~~v~~~d----~~~~yl~v~~~~~~~ 273 (274)
+++.-|++++. .++|+++||+.++..+ +.++.++|.+..+.+
T Consensus 241 ~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~~~ 290 (293)
T PTZ00146 241 CIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVK 290 (293)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcCCc
Confidence 12333444443 4789999999887766 446677777766543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-17 Score=151.54 Aligned_cols=175 Identities=13% Similarity=0.064 Sum_probs=129.2
Q ss_pred cccccccccccccccccC----CccchhHHHHHHHHHHh-CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHH
Q 023974 77 VVNFEDFTEIDWSFLDSD----ELNFKEHIQRIDQIISA-GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFV 150 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~----~~~~~~~~~w~~~ll~~-~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~M 150 (274)
...|++....-||.-... .-++ ....++++.+.. .+ -+|.+|| ||||-|.++..+++.| ..|+|+|+|++|
T Consensus 17 ~~~F~~la~~wwd~~g~f~~LH~~N~-~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~ 93 (243)
T COG2227 17 LDKFEALASRWWDPEGEFKPLHKINP-LRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKP 93 (243)
T ss_pred HHHHHHHHhhhcCCCCceeeeeeecc-chhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHH
Confidence 567888888888843332 1111 111122222211 11 3778999 9999999999999998 599999999999
Q ss_pred HHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH--
Q 023974 151 LAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ-- 224 (274)
Q Consensus 151 L~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~-- 224 (274)
|++|+.+-. .+++.++.+|+|-...++||+|+|.=++.|++||+.+++++.+.+||||.+++++.. |......
T Consensus 94 I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin-rt~ka~~~~ 172 (243)
T COG2227 94 IEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN-RTLKAYLLA 172 (243)
T ss_pred HHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc-cCHHHHHHH
Confidence 999997643 356999999999887899999999999999999999999999999999999998654 3221111
Q ss_pred ---H----hhCcc--cccccCCCHHHHHHHHHhCCCcEeE
Q 023974 225 ---R----KQFPD--VIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 225 ---~----~~~~~--~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
. +..+. .....|..++|+...+..+||++..
T Consensus 173 i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 173 IIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred HHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 0 11111 1335688899999999998887654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-17 Score=149.82 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=112.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
...+++.+.+.++.+|| ||||||.++..++++.| .+++++|. ++|++.|+++. ++++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 45567777888889999 99999999999999887 89999998 79999998752 2478999999876654
Q ss_pred CccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC----hhHHHHHHhhCc----ccccccCCCHHHHHHHH
Q 023974 177 PLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG----REALQKQRKQFP----DVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g----r~~l~~~~~~~~----~~si~~fps~~eL~~ll 246 (274)
.+|+|++...+|...+. .+++++++++|||||+++|.+... ......+..... ..+...+.+.+|+.+++
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence 36999988777765443 479999999999999999975311 111121221111 11344677889999999
Q ss_pred HhCCCcEeEE
Q 023974 247 GNHCFQIDNF 256 (274)
Q Consensus 247 ~~aGF~~v~~ 256 (274)
+++||+.+..
T Consensus 295 ~~aGf~~v~~ 304 (306)
T TIGR02716 295 ESLGYKDVTM 304 (306)
T ss_pred HHcCCCeeEe
Confidence 9999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=141.75 Aligned_cols=142 Identities=8% Similarity=0.047 Sum_probs=105.0
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V 181 (274)
.+++.+...++.+|| +|||||.++..|++++ .+|+|+|+|+.|++.++++.. ++.+.++|+...++. ++||+|
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I 98 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFI 98 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEE
Confidence 445555565667999 9999999999998876 599999999999999876531 367778888777764 689999
Q ss_pred EecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 182 FLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 182 ~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+++..+++.. +....+++++|+|||||+++|....... .+.. .......+.+|+.++++ +|+++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~-------~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e 169 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA-------DYPCHMPFSFTFKEDELRQYYA--DWELLKYNE 169 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC-------CCCCCCCcCccCCHHHHHHHhC--CCeEEEeec
Confidence 9998887763 5678999999999999996664221110 0110 01123567899999886 598888764
Q ss_pred c
Q 023974 259 E 259 (274)
Q Consensus 259 ~ 259 (274)
.
T Consensus 170 ~ 170 (195)
T TIGR00477 170 A 170 (195)
T ss_pred c
Confidence 3
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=140.69 Aligned_cols=177 Identities=11% Similarity=0.017 Sum_probs=125.8
Q ss_pred ccccccccccccccCCcc---chhHHHHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023974 80 FEDFTEIDWSFLDSDELN---FKEHIQRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~~~---~~~~~~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
|..+.-.-||......+. .....+|+++.+.... ...+.+|| +|||+|.++..+++.+. +++|+|+|++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 5 FSALAHEWWDPNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVA 83 (224)
T ss_pred HHHHHHHhcCCCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence 444445556655533222 2233456666654321 23467999 99999999998877654 799999999999999
Q ss_pred HHhCC-----CceEEEeeccCCCCCC-CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHH-H
Q 023974 155 KEKYD-----TVKCWQGELIYVPDKW-GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQ-R 225 (274)
Q Consensus 155 r~k~~-----~v~~~~gDae~LPf~~-~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~-~ 225 (274)
+++.. ++.+.++|+++++... ++||+|++...+++..+++.+++++.++|+|||.++++..... ...... .
T Consensus 84 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 84 KLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred HHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 98632 4788899999887653 8999999999999999999999999999999999999754321 111111 0
Q ss_pred h----hC-cc--cccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 226 K----QF-PD--VIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 226 ~----~~-~~--~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
. .+ +. .....+.+.+++.++++++||+++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0 01 11 012347788999999999999988765
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=149.85 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhCCC---CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------CceEEEe
Q 023974 101 HIQRIDQIISAGEI---DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------TVKCWQG 166 (274)
Q Consensus 101 ~~~w~~~ll~~~~~---~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------~v~~~~g 166 (274)
+..+++.+++.+.. .++.+|| ||||||.++..|++.+ .+|+|+|+|++||+.|+++.+ +++|.++
T Consensus 126 ~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 126 HAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred hHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 33455666666543 2578999 9999999999998876 599999999999999998753 3578888
Q ss_pred eccCCCCCCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEc-CCC--hhHHHHHHhhCccc---ccccCCC
Q 023974 167 ELIYVPDKWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISH-PQG--REALQKQRKQFPDV---IVSDLPD 238 (274)
Q Consensus 167 Dae~LPf~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~-~~g--r~~l~~~~~~~~~~---si~~fps 238 (274)
|++++ +++||+|+|..++.+.++. ...++.+.+ +.+| +++|+. +.. ...++.....+... ....+.+
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g-~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s 279 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEK-RLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHA 279 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCC-EEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCC
Confidence 87665 5889999999877665543 245666664 4454 555543 221 11122222223221 1123558
Q ss_pred HHHHHHHHHhCCCcEeEEEe-cCCeEE
Q 023974 239 QMTLQKAAGNHCFQIDNFVD-ESGFYL 264 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v~~~d-~~~~yl 264 (274)
.++++++++++||++....- ...+|+
T Consensus 280 ~eel~~lL~~AGf~v~~~~~~~~~~y~ 306 (315)
T PLN02585 280 EADVERALKKAGWKVARREMTATQFYF 306 (315)
T ss_pred HHHHHHHHHHCCCEEEEEEEeecceeH
Confidence 99999999999998765433 445554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=155.07 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=117.0
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCcc
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD 179 (274)
.+...+++.+++.++.+|| ||||+|.++..+++....+|+|+|+|++|++.|+++..+ +++..+|..++ +++||
T Consensus 154 ~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD 230 (383)
T PRK11705 154 AKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFD 230 (383)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCC
Confidence 3667788888999999999 999999999989876446999999999999999998753 67888898776 47899
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--cc-ccccCCCHHHHHHHHHhCCCcEe
Q 023974 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--DV-IVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--~~-si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++...+.++. +++..++++.|+|||||++++........ ......+. .+ -...+|+.+++.+.++ .||.+.
T Consensus 231 ~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~ 308 (383)
T PRK11705 231 RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-DTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVME 308 (383)
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-CCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEE
Confidence 999887777763 45789999999999999999964321110 00000111 01 1135889999988766 589888
Q ss_pred EEEecCCeE
Q 023974 255 NFVDESGFY 263 (274)
Q Consensus 255 ~~~d~~~~y 263 (274)
.+.+-..+|
T Consensus 309 d~~~~~~hy 317 (383)
T PRK11705 309 DWHNFGADY 317 (383)
T ss_pred EEecChhhH
Confidence 777655544
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-17 Score=150.74 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=127.6
Q ss_pred cccccccccccccccccC---CccchhHHHHHH-HHHHhC-CCCCC------CeEE-EEcCchHHHHHHHHhCCCcEEEE
Q 023974 77 VVNFEDFTEIDWSFLDSD---ELNFKEHIQRID-QIISAG-EIDES------SKVL-VSISSEEFVDRVVESSPSLLLVV 144 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~---~~~~~~~~~w~~-~ll~~~-~~~~~------~rVL-vGcGTG~l~~~L~~~~~~~V~gV 144 (274)
+..|.+.+..-||.--.. -+.+.+.-.+++ .++... ...|+ .+|| ||||+|-++..|++.+ +.|+||
T Consensus 39 V~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GI 117 (282)
T KOG1270|consen 39 VKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGI 117 (282)
T ss_pred HHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEee
Confidence 678888888888843221 122222223343 334444 22444 6799 9999999999999988 599999
Q ss_pred eCcHHHHHHHHHhC---C----C----ceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 145 HDSLFVLAGIKEKY---D----T----VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 145 D~S~~ML~~Ar~k~---~----~----v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|.|++|+++|+++- | + +++...|+|.+- +.||+|+|.-++.|+.||++.++.+.+.|||||+++|+
T Consensus 118 D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 118 DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 99999999999872 1 1 456777877774 34999999999999999999999999999999999998
Q ss_pred cCCChhHHH--------HHHhhC-c-cc-ccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 214 HPQGREALQ--------KQRKQF-P-DV-IVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 214 ~~~gr~~l~--------~~~~~~-~-~~-si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+. .|..+. +.-..+ + .. .-..|++++|+..+++.+++++..+..
T Consensus 195 ti-nrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 195 TI-NRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred eh-hhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 53 232221 111111 1 11 235699999999999999998765543
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=130.48 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=75.2
Q ss_pred EE-EEcCchHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecc-cCcC
Q 023974 120 VL-VSISSEEFVDRVVESS---P-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYF-LPAM 189 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~---~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~ 189 (274)
|| +|||||..+..+.+.. + .+++|||+|++||+.|+++. .+++|+++|++++|+.+++||+|++.. ++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 79 9999999999998874 4 79999999999999999887 578999999999999999999999954 3776
Q ss_pred CC--CHHHHHHHHHHhcCCCC
Q 023974 190 PF--PLDQVFETLANRCSPGA 208 (274)
Q Consensus 190 ~~--d~~~al~el~RvLKPGG 208 (274)
.. +.++++++++++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 54 45689999999999998
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=142.69 Aligned_cols=155 Identities=10% Similarity=0.199 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.-.+++++.+.+....+|. +|||+|..+..|+++-| +.|+|+|-|++||++|+++.|+++|.+||+.+.- .+.++|+
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 3567899999999999999 99999999999999988 9999999999999999999999999999998875 4689999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh--H---HHHHH------hhCcc--cccccCCCHHHHHHHHH
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE--A---LQKQR------KQFPD--VIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~--~---l~~~~------~~~~~--~si~~fps~~eL~~ll~ 247 (274)
+++|.++||++|.-+.|..+.-.|.|||.|.+.-|.+.. + +.+.. ..+.. ..-..+|+.....+++.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999996443311 1 11111 11111 12345788888888888
Q ss_pred hCCCcEeEEEe
Q 023974 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
..+-++..|+.
T Consensus 176 ~~~~rvDiW~T 186 (257)
T COG4106 176 PLACRVDIWHT 186 (257)
T ss_pred cccceeeeeee
Confidence 88887777653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.2e-16 Score=132.87 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.+..+++.+.+.++.+|| ||||||.++..++++.+ .+|+|+|+|++|++.|+++. ++++++++|+. .++ .+
T Consensus 19 ~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 19 VRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-Cc
Confidence 344556778888999999 99999999999988776 79999999999999998752 46889999975 333 46
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+||+|++..... ...+.++++.++|||||++++.... ..+.+++.+++++.||+.+.
T Consensus 97 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~-------------------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 97 KADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL-------------------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec-------------------HhhHHHHHHHHHHCCCCcce
Confidence 899999875443 4578899999999999999986421 12235666788888885443
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=141.11 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeec-cCCC--CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGEL-IYVP--DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDa-e~LP--f~~~sFD~V~~~f 185 (274)
++.+|| +|||||.++..+++..+ .+|+|||+|++|++.|+++. ++++++++|+ +.++ +++++||+|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999 99999999999988766 78999999999999998753 5789999999 8887 7789999999987
Q ss_pred cCcCCC--------CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMPF--------PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~--------d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
...|.. ..+.++++++|+|||||+|+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 654432 146899999999999999999754
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=124.55 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC-CC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY-VP 172 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~-LP 172 (274)
.++....+++.+.+.++.+|| +|||+|.++..+++..+ .+|+|+|+|+.|++.|+++ .++++++.+|+.+ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 345667788888888889999 99999999999988865 7999999999999999865 3568889999876 44
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...++||+|++..... ...+++++++|+|||||+|++.
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 4457999999875443 3468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=140.76 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+.+.. +.++.+|| ||||||.++..|.+..+ .+++|||+|++|++.|+++.+++.+.++|+.+ |+.+++||+|+
T Consensus 34 ~~~~l~~--~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~ 110 (204)
T TIGR03587 34 FARALNR--LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVL 110 (204)
T ss_pred HHHHHHh--cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEE
Confidence 3344433 45678999 99999999999988744 79999999999999999999999999999998 99999999999
Q ss_pred ecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 183 LYFLPAMPF--PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++.+++++. +..+++++++|++ ++.++|...
T Consensus 111 ~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 111 TKGVLIHINPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred ECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 998887763 4678999999998 678888654
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=146.38 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf 173 (274)
...+++.+++.+++++|++|| ||||-|.++.+++++...+|+||.+|++..+.|+++.. .+++..+|..+++.
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 334678889999999999999 99999999999999833699999999999999987632 47889999988765
Q ss_pred CCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChh--HH-------HHHHhh-CcccccccCCCHHH
Q 023974 174 KWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGRE--AL-------QKQRKQ-FPDVIVSDLPDQMT 241 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~--~l-------~~~~~~-~~~~si~~fps~~e 241 (274)
+||.|++--.+-++ .+..+.++++.|+|||||++++....... .. .-+.++ ++ ...+|+.++
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP---gg~lps~~~ 200 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP---GGYLPSLSE 200 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST---TS---BHHH
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC---CCCCCCHHH
Confidence 99999987556555 46789999999999999999973221111 10 112222 22 246899999
Q ss_pred HHHHHHhCCCcEeEEEecCCe
Q 023974 242 LQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d~~~~ 262 (274)
+...+++.||++..+.+....
T Consensus 201 ~~~~~~~~~l~v~~~~~~~~h 221 (273)
T PF02353_consen 201 ILRAAEDAGLEVEDVENLGRH 221 (273)
T ss_dssp HHHHHHHTT-EEEEEEE-HHH
T ss_pred HHHHHhcCCEEEEEEEEcCcC
Confidence 999999999999888775443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=145.67 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=87.7
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchH----HHHHHHHhCC------CcEEEEeCcHHHHHHHHHhC----------------
Q 023974 106 DQIISAGEIDESSKVL-VSISSEE----FVDRVVESSP------SLLLVVHDSLFVLAGIKEKY---------------- 158 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~----l~~~L~~~~~------~~V~gVD~S~~ML~~Ar~k~---------------- 158 (274)
..+++.....++-+|+ +|||||. ++..|++..+ .+|+|+|+|++||++|+++.
T Consensus 89 p~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~ 168 (264)
T smart00138 89 PLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLAR 168 (264)
T ss_pred HHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhh
Confidence 3344443445567999 9999996 4444544321 58999999999999999863
Q ss_pred ----------------CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 159 ----------------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 159 ----------------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..+.|.++|+.+.|+.+++||+|+|..+++++. +.++++++++++|||||+|+|.+..
T Consensus 169 yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 169 YFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred hEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 147899999999988889999999988888775 4458999999999999999998654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=155.34 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=112.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CCCceEEEeecc--CCCCCCCCc
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YDTVKCWQGELI--YVPDKWGPL 178 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae--~LPf~~~sF 178 (274)
+..+++.+...++.+|| ||||+|.++..|++.+ .+|+|||+|++|++.++++ .+++.++++|++ .+|+.+++|
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 45666667766788999 9999999999998876 4999999999999998764 357899999996 578888999
Q ss_pred cEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 179 DVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
|+|++.+.++++.+ +.++++++.|+|||||++++.+...... ..... ......+....++.+++.++||...
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-~~~~~---~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-GDSKR---KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-Ccccc---cCCCCeecChHHHHHHHHHheeccC
Confidence 99999999988876 5689999999999999999965321110 00000 1122334557899999999999754
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=144.00 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=102.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.++.+|| +|||+|.++..|++.+ .+|+|+|+|++|++.++++. -++++.++|+...++ +++||+|++.+++++
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 3445999 9999999999998876 59999999999999988653 257888899888766 789999999988887
Q ss_pred CC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEEecC
Q 023974 190 PF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 190 ~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
+. +...+++++.|+|||||+++|....... .+.. .....+.+.+||.+.++ +|+++.+.+..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~-------~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTE-------DYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccc-------cCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 64 5678999999999999997663222111 0010 11134567899999987 49999886543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-16 Score=133.52 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=81.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
++.+|| ||||||.++..++...+ ++|+|||.|++|++.++++ .++++++++|+++++ .+++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 478999 99999999998877766 7899999999999888754 346899999999985 368999999875
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
..+.+..++++.++|||||++++.+.
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 34677899999999999999999753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=8e-18 Score=130.39 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=62.0
Q ss_pred E-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-----CceEEEeeccCCCCC--CCCccEEEecccCcCCC
Q 023974 121 L-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-----TVKCWQGELIYVPDK--WGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDae~LPf~--~~sFD~V~~~f~l~~~~ 191 (274)
| ||||||.++..+++..+ .+++|+|+|+.||++|++++. +..++..+..++... .++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7 99999999999999866 899999999999988887743 234455554444322 25999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCEE
Q 023974 192 PLDQVFETLANRCSPGARV 210 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrl 210 (274)
+++++++.++++|||||+|
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=135.25 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=100.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEeccc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
..++.+|| ||||||.++..|++.+. +|+|+|+|++|++.|+++.. ++.+.++|+ +..+++||+|++...
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hhccCCcCEEEEcch
Confidence 46778999 99999999999988764 79999999999999998742 478888884 455789999999887
Q ss_pred CcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhH--HHHHHhhCcc---cccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 187 PAMPF--PLDQVFETLANRCSPGARVVISHPQGREA--LQKQRKQFPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 187 l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~--l~~~~~~~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+++.+ +..++++++.+.+++|+.+. ..+..... ...+...+.. .....+.+.+++.++++++||++......
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 75544 44578889988775444333 22222111 1111111211 11234668899999999999998887663
Q ss_pred C
Q 023974 260 S 260 (274)
Q Consensus 260 ~ 260 (274)
.
T Consensus 216 ~ 216 (230)
T PRK07580 216 S 216 (230)
T ss_pred c
Confidence 3
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=135.47 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC---CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP---DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP---f~~~sFD~V~~~f 185 (274)
...+|| ||||+|.++..++++.| ..|+|||+|++|++.|+++ .++++++++|+.+++ +.++++|.|+++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 446899 99999999999998877 8999999999999999875 357899999998865 4567999999998
Q ss_pred cCcCCCCH--------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMPFPL--------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~d~--------~~al~el~RvLKPGGrlvIs~~ 215 (274)
...|.... ++.+++++|+|||||+|++.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 65554322 5789999999999999998654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-16 Score=158.59 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=89.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC--CCCCCccEEEe
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP--DKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP--f~~~sFD~V~~ 183 (274)
....++.+|| ||||||.++..+++..+ .+|+|+|+|+.|++.|+++.+ ++.++++|+.++| +++++||+|++
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 3445688999 99999999999988776 899999999999999998642 4678899999998 88899999999
Q ss_pred cccCcCC-------------CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 184 YFLPAMP-------------FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 184 ~f~l~~~-------------~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++.+|++ .++.+++++++|+|||||+++|.+.
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9877753 3568999999999999999999753
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=129.13 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=98.4
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEeccc
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+...++.+|| +|||||.++..+++.++ +|+|+|+|++|++.|+++. .++++.++|+.+.+ .++||+|+++-.
T Consensus 15 l~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 15 LRELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred HHhcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCC
Confidence 3445667999 99999999999988876 8999999999999999863 25788899987765 359999999854
Q ss_pred CcCCCC---------------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHH
Q 023974 187 PAMPFP---------------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKA 245 (274)
Q Consensus 187 l~~~~d---------------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~l 245 (274)
++...+ .++.++++.|+|||||++++.+.... ...++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-------------------~~~~~~~~ 152 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-------------------GEPDTFDK 152 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-------------------ChHHHHHH
Confidence 433322 35679999999999999999754321 13677889
Q ss_pred HHhCCCcEeEEEecC
Q 023974 246 AGNHCFQIDNFVDES 260 (274)
Q Consensus 246 l~~aGF~~v~~~d~~ 260 (274)
+++.||+.....+..
T Consensus 153 l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 153 LDERGFRYEIVAERG 167 (179)
T ss_pred HHhCCCeEEEEEEee
Confidence 999999876655544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=136.56 Aligned_cols=130 Identities=20% Similarity=0.225 Sum_probs=96.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
+.++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++.. ++. +...++..+.+||+|+++....
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~~~~~fD~Vvani~~~-- 190 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQGDLKADVIVANILAN-- 190 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEccCCCCcCEEEEcCcHH--
Confidence 45788999 99999999888777665579999999999999998743 221 1112333334899999885432
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEe
Q 023974 191 FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
.....++++.++|||||+++++.... ...+++.+.+++.||++......++-..++++|
T Consensus 191 -~~~~l~~~~~~~LkpgG~lilsgi~~-------------------~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 -PLLELAPDLARLLKPGGRLILSGILE-------------------EQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred -HHHHHHHHHHHhcCCCcEEEEEECcH-------------------hhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 24678899999999999999974321 124678889999999988887776655555554
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=129.20 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=87.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh---C---CCceEEEeeccCC-CCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK---Y---DTVKCWQGELIYV-PDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k---~---~~v~~~~gDae~L-Pf~ 174 (274)
+.-.+..+.+.++++|| +|||||.++..+++. ++ ++|+++|.+++|++.|+++ . .++.++.+|+.+. +..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 34446778899999999 999999999888765 44 7999999999999999875 2 3578899999774 444
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.||+|++... ..++.++++++.++|||||++++.
T Consensus 109 ~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 578999998643 347789999999999999999984
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-16 Score=139.10 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=108.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCce-EEEeeccCCC-CCCCCccEEEecc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVK-CWQGELIYVP-DKWGPLDVVFLYF 185 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~-~~~gDae~LP-f~~~sFD~V~~~f 185 (274)
.....|| ||||||....++-- .| .+||.+|+++.|-+.|.++ ++++. |+.|++|+|| .+|+|+|+|++.+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3334689 99999999888732 24 7999999999999887654 55666 9999999999 8999999999999
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCCh-hHHHHHHhhCccc--c--ccc-CCCHHHHHHHHHhCCCcEeEEEe
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS-HPQGR-EALQKQRKQFPDV--I--VSD-LPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr-~~l~~~~~~~~~~--s--i~~-fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++--+.|+.++|+|+.|+|||||++++. |..+. +.++.+-+++.+. + ... --+ -+.-+.++.+-|..++-+.
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~lt-rd~~e~Leda~f~~~~~kr 232 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLT-RDTGELLEDAEFSIDSCKR 232 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEe-hhHHHHhhhcccccchhhc
Confidence 9999999999999999999999999874 43332 2344443333221 0 000 112 3555678888887766544
Q ss_pred --cCCeEEEE
Q 023974 259 --ESGFYLVV 266 (274)
Q Consensus 259 --~~~~yl~v 266 (274)
-...|.+|
T Consensus 233 ~~~~ttw~~V 242 (252)
T KOG4300|consen 233 FNFGTTWVIV 242 (252)
T ss_pred ccCCceEEEE
Confidence 23335544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=133.33 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=87.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~ 174 (274)
....+++.+.+.++++|| ||||||.++..+++.. + ++|+|+|++++|++.|+++. . +++++.+|+.+.+..
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 466778888889999999 9999999998888763 2 79999999999999998753 2 378999999886656
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++||+|++.....++ .+++.++|||||+|++.
T Consensus 140 ~~~fD~Ii~~~~~~~~------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAASTI------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcchh------hHHHHHhcCcCcEEEEE
Confidence 7899999999776554 25788999999999985
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=131.28 Aligned_cols=141 Identities=18% Similarity=0.081 Sum_probs=112.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-CC-CCCCCccEEEecccCcC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-VP-DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-LP-f~~~sFD~V~~~f~l~~ 189 (274)
.+++|+||| +|||.|.+...|.+....++.|||++++.+..+.+|. +..+|+|+++ |+ |+|++||.|+++-+++.
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 457899999 9999999999998864479999999999998887764 6679999987 54 89999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC--------------cccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF--------------PDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~--------------~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+.+|+++|+||.|| |.+.+|+-|.-..|-.+++-.. -+.-..++.|..++++++++.|+++..
T Consensus 88 ~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~ 164 (193)
T PF07021_consen 88 VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEE 164 (193)
T ss_pred HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEE
Confidence 99999999999777 7788888665444433332111 111234588999999999999998876
Q ss_pred EEe
Q 023974 256 FVD 258 (274)
Q Consensus 256 ~~d 258 (274)
-.-
T Consensus 165 ~~~ 167 (193)
T PF07021_consen 165 RVF 167 (193)
T ss_pred EEE
Confidence 443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=137.47 Aligned_cols=188 Identities=14% Similarity=0.061 Sum_probs=135.2
Q ss_pred CCCccccccccccccccccccccCC--ccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCc
Q 023974 71 DEGTVSVVNFEDFTEIDWSFLDSDE--LNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 71 ~~~~~~~~~f~~~~~~~Wd~~~~~~--~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S 147 (274)
+-++..|..|-|---..|-.+-... +.+.....+++.+++.+++++|.+|| ||||-|.++.+++++...+|+||++|
T Consensus 25 Dl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS 104 (283)
T COG2230 25 DLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS 104 (283)
T ss_pred hcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCC
Confidence 3344556666653333222332222 45556667889999999999999999 99999999999999854699999999
Q ss_pred HHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEE---cCC
Q 023974 148 LFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVIS---HPQ 216 (274)
Q Consensus 148 ~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs---~~~ 216 (274)
++|++.++++. + +++++..|..+++ +.||.|++-=.+.++.. .+..|+.+.++|+|||++++- ++.
T Consensus 105 ~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 105 EEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99999999863 2 5677777766554 45999998855555443 789999999999999999873 222
Q ss_pred Ch--hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 217 GR--EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 217 gr--~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.+ .....+.++.. -...+|+..++.+..+++||.+..++.....|
T Consensus 182 ~~~~~~~~~i~~yiF--PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hY 228 (283)
T COG2230 182 QEFRRFPDFIDKYIF--PGGELPSISEILELASEAGFVVLDVESLRPHY 228 (283)
T ss_pred cccccchHHHHHhCC--CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHH
Confidence 11 12222233321 12568999999999999999988776665554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=135.20 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHh----CCC--ceEEEeeccC-CCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEK----YDT--VKCWQGELIY-VPDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k----~~~--v~~~~gDae~-LPf~ 174 (274)
...+.+.+ .++.+|| +|||||..+..|++.. +.+|+|||+|++||+.|+++ +|+ +.+++||..+ +++.
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 33444333 4667999 9999999999998874 36899999999999999876 355 4568999876 4443
Q ss_pred CC----CccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WG----PLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~----sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.. ...++++...++|.. +..+.|++++++|+|||+|+|.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 32 233444446677764 3446799999999999999984
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=127.76 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=110.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sF 178 (274)
.+.+.+....+.++++|| +|||+|.++..+++.+..+|+|+|+|+.|++.|+++.. ++.++++|+.+. +.+++|
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~f 102 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPF 102 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCe
Confidence 344556666788889999 99999999998877643699999999999999987532 467888998763 456899
Q ss_pred cEEEecc--cCcCCC-------------------CHHHHHHHHHHhcCCCCEEEEEcCCC---hhHHHHHHhhCccc---
Q 023974 179 DVVFLYF--LPAMPF-------------------PLDQVFETLANRCSPGARVVISHPQG---REALQKQRKQFPDV--- 231 (274)
Q Consensus 179 D~V~~~f--~l~~~~-------------------d~~~al~el~RvLKPGGrlvIs~~~g---r~~l~~~~~~~~~~--- 231 (274)
|+|+++- ...... ..+.+++++.++|||||++++.+... ...++.+......+
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 9999983 222110 14567889999999999999854321 23333343321111
Q ss_pred --ccccCCCHHH-HHHHHHhCCCcEeEEEecCCeEEEEEEec
Q 023974 232 --IVSDLPDQMT-LQKAAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 232 --si~~fps~~e-L~~ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
....|..... ...++++.||-.. -+.+++..+.|.+|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 223 (223)
T PRK14967 183 ASQWIPFGPVLRARAAWLERRGLLPP-GQREEELVVIRADKP 223 (223)
T ss_pred EeeccCccHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence 1123443222 3378899999744 334455556666654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-15 Score=131.91 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=88.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~ 174 (274)
.....+++.+.+.++++|| ||||||.++..+++. ++ ++|+++|++++|++.|+++. .++++++||+.+.+..
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 3567788888999999999 999999999988876 34 79999999999999999863 4689999999887777
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++||+|++......+ ..++.+.|||||+|++..
T Consensus 143 ~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7999999988665443 346677899999999953
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=131.15 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=86.1
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------- 172 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------- 172 (274)
+.++.+..+ +.++.+|| ||||||.++..++++. + +.|+|||+++ | ...++++++++|+++.+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHH
Confidence 344445555 57889999 9999999999998874 4 7999999998 4 24578999999999864
Q ss_pred CCCCCccEEEecccCcCCCCH-----------HHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 173 DKWGPLDVVFLYFLPAMPFPL-----------DQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~-----------~~al~el~RvLKPGGrlvIs~~~g 217 (274)
+.+++||+|+++..+++..++ +.+++++.|+|||||+|+|.+..+
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 678999999998777665432 568999999999999999965543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=129.98 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=87.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
....+++.+.+.++.+|| ||||||.++..|++.. + ++|+|||.+++|++.|+++. .+++++++|+.+.+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 456777888899999999 9999999999998874 3 57999999999999999763 46899999998876566
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++||+|++......+ ..++.+.|||||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 899999988655443 45678889999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=125.64 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=100.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
..++.+++.+. ..+.+|| +|||+|.++..+++..+ ..|+|+|+|+.|++.|+++. ++++++++|+.+ ++.+
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence 35555665554 3446899 99999999999988766 79999999999999998752 358899999977 5567
Q ss_pred CCccEEEecccCcC------CC--------------------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc
Q 023974 176 GPLDVVFLYFLPAM------PF--------------------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP 229 (274)
Q Consensus 176 ~sFD~V~~~f~l~~------~~--------------------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~ 229 (274)
++||+|+++.-+.. .. ....+++++.++|||||++++.+..
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~------------- 219 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY------------- 219 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-------------
Confidence 89999999732111 00 1236788999999999999996421
Q ss_pred ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 230 DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 230 ~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
...+++.++++++||+.+.+..
T Consensus 220 -------~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 220 -------DQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred -------cHHHHHHHHHHhCCCCceEEEe
Confidence 1236788899999997766544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=134.63 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.-.+.++...++.++++|| +|||||.++..++..+ .+|+|+|++++|++.|+++. +++.+.++|+.++|+.++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 3445566667888999999 9999999987766555 59999999999999998763 457889999999999889
Q ss_pred CccEEEec--ccCcCCC------C-HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 177 PLDVVFLY--FLPAMPF------P-LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~--f~l~~~~------d-~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||+|+++ |+.+... + ..++++++.|+|||||++++..+
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99999997 4433211 1 47899999999999999998654
|
This family is found exclusively in the Archaea. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-14 Score=119.11 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CC--ceEEEeeccCCCCCCCCccEEEecc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DT--VKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~--v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
..++.+|| +|||+|.++..+++++ .+|+|+|.|++|++.++++. .+ +.++++|+.+ ++.+++||+|+++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 36778999 9999999999998875 69999999999999998763 23 7888999866 34556899999873
Q ss_pred cCcC---------------------CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHH
Q 023974 186 LPAM---------------------PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQK 244 (274)
Q Consensus 186 ~l~~---------------------~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ 244 (274)
.+.. ....+.+++++.++|||||++++..+.. -..+++.+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------------------~~~~~l~~ 159 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------------------TGEDEVLE 159 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-------------------CCHHHHHH
Confidence 2211 1114568999999999999998864311 12467889
Q ss_pred HHHhCCCcEeEEE
Q 023974 245 AAGNHCFQIDNFV 257 (274)
Q Consensus 245 ll~~aGF~~v~~~ 257 (274)
+++++||++....
T Consensus 160 ~~~~~g~~~~~~~ 172 (188)
T PRK14968 160 YLEKLGFEAEVVA 172 (188)
T ss_pred HHHHCCCeeeeee
Confidence 9999999766543
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-14 Score=122.06 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf~~~ 176 (274)
...+++.+.+.++++|| +|||||.++..+++..+ ++|+|+|+|++|++.|+++. .+++++.+|+.+ ++....
T Consensus 29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 33467778888999999 99999999998877665 79999999999999998753 468899999865 333334
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+|.|++.. ..+.++++++++++|||||++++...
T Consensus 109 ~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 568876642 23568999999999999999999754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=137.57 Aligned_cols=108 Identities=6% Similarity=0.097 Sum_probs=90.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC--CCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV--PDKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L--Pf~~~s 177 (274)
.+++......+..+| ||||+|.++..++++.| ..++|||+++.|++.|.++ .+++.++++|+..+ ++++++
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCc
Confidence 456566666677999 99999999999999887 8999999999999998865 45799999999875 577899
Q ss_pred ccEEEecccCcCCCCH------HHHHHHHHHhcCCCCEEEEEc
Q 023974 178 LDVVFLYFLPAMPFPL------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~------~~al~el~RvLKPGGrlvIs~ 214 (274)
+|.|+++|..-|...+ ...+++++|+|||||.+.+.+
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998765454332 579999999999999999953
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=123.51 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=107.5
Q ss_pred HHHHHH-hCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCcc
Q 023974 105 IDQIIS-AGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 105 ~~~ll~-~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD 179 (274)
.+.++. .+.-..-.++| +|||.|.++..|+.++ .+++++|+|+.-|+.||++. ++++|+++|+.+.. +++.||
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FD 108 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFD 108 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EE
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCee
Confidence 344454 45666668999 9999999999999887 59999999999999999985 56999999987753 579999
Q ss_pred EEEecccCcCCC---CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 180 VVFLYFLPAMPF---PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 180 ~V~~~f~l~~~~---d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+|+++-.+.++. +++.++..+.+.|+|||.||+.|.. ++..+.|. +.| ..+++..++.+. |..+.-
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-----d~~c~~wg----h~~-ga~tv~~~~~~~-~~~~~~ 177 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-----DANCRRWG----HAA-GAETVLEMLQEH-LTEVER 177 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE------HHHHHHTT-----S---HHHHHHHHHHH-SEEEEE
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-----CCcccccC----ccc-chHHHHHHHHHH-hhheeE
Confidence 999996666654 4567899999999999999998763 22223343 222 567888887775 765554
Q ss_pred Ee------cCCeEEEEEEecCC
Q 023974 257 VD------ESGFYLVVLKFSKS 272 (274)
Q Consensus 257 ~d------~~~~yl~v~~~~~~ 272 (274)
+. +++..++-+++|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 178 VECRGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp EEEE-SSTTSEEEEEEEE--SS
T ss_pred EEEcCCCCCCceEeeeecCCcC
Confidence 43 56667777777754
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-14 Score=131.19 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=116.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH--Hh-CC-C--ceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK--EK-YD-T--VKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar--~k-~~-~--v~~~~gDae~LPf~~~ 176 (274)
+.+++...+.--.|.+|| ||||.|....+++++++..|+|+|++..-+.+.+ ++ .+ + +.++---+|+||. .+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~ 181 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LG 181 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cC
Confidence 345666666555788999 9999999999999988889999999999877643 33 22 2 2333357899998 89
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHHH-HhhCccc-ccccCCCHHHHHHHHHhCCCc
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQKQ-RKQFPDV-IVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~~-~~~~~~~-si~~fps~~eL~~ll~~aGF~ 252 (274)
.||.|+|.-++-|..+|-.+|+++...|||||.+++-+.. |.....-. ...|..+ -+--+|+...|.++++++||+
T Consensus 182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence 9999999877777789999999999999999999984321 11100000 1123222 233479999999999999999
Q ss_pred EeEEEecC
Q 023974 253 IDNFVDES 260 (274)
Q Consensus 253 ~v~~~d~~ 260 (274)
.++..+..
T Consensus 262 ~v~~v~~~ 269 (315)
T PF08003_consen 262 DVRCVDVS 269 (315)
T ss_pred eEEEecCc
Confidence 99988765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=123.43 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEee
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQGE 167 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~gD 167 (274)
.+.+..+.+.++.||| +|||+|.-+..|+++| ..|+|||+|+..++.+.++ ..+++++++|
T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G-~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D 105 (218)
T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG-HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGD 105 (218)
T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC-CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECc
Confidence 3344444556778999 9999999999999887 4999999999999987532 2357899999
Q ss_pred ccCCCCCC-CCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEE-EcCCChhHHHHHHhhCcccccccCCCHHHHH
Q 023974 168 LIYVPDKW-GPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVI-SHPQGREALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 168 ae~LPf~~-~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvI-s~~~gr~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
+.+++..+ ..||.|+-...+++++ ..++.++.+.++|||||++++ ++...... . . ..-...+.+||.
T Consensus 106 ~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---~----~--gPp~~~~~~el~ 176 (218)
T PRK13255 106 FFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---L----A--GPPFSVSDEEVE 176 (218)
T ss_pred ccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---C----C--CCCCCCCHHHHH
Confidence 99986543 6899999664444432 456899999999999997444 43322110 0 0 011246789999
Q ss_pred HHHHhCCCcEeEEEec
Q 023974 244 KAAGNHCFQIDNFVDE 259 (274)
Q Consensus 244 ~ll~~aGF~~v~~~d~ 259 (274)
+++.. +|++..++..
T Consensus 177 ~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 177 ALYAG-CFEIELLERQ 191 (218)
T ss_pred HHhcC-CceEEEeeec
Confidence 88863 3776666553
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-14 Score=124.71 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=100.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEe
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQG 166 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~g 166 (274)
+...++.+.+.++.||| +|||+|.-+..|+++|- .|+|||+|+.+++.|.++ ..+++++++
T Consensus 23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 33444444445778999 99999999999999884 999999999999986442 235889999
Q ss_pred eccCCCCC-CCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccccCCCHHHH
Q 023974 167 ELIYVPDK-WGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 167 Dae~LPf~-~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
|+.+++.. .+.||.|+-...+++++ ..++.++.+.+.|||||++++. ....... .. ......+.+||
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~-------~~--gpp~~~~~~eL 172 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE-------MA--GPPFSVSPAEV 172 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC-------CC--CcCCCCCHHHH
Confidence 99998753 46799998764444432 3457899999999999986553 2111000 00 01124678899
Q ss_pred HHHHHhCCCcEeEEEe
Q 023974 243 QKAAGNHCFQIDNFVD 258 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d 258 (274)
.+++.. +|++..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 888764 577666554
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=127.13 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=90.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEeccc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
..++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++.. .+.+..+|. .+..+++||+|+++..
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~--~~~~~~~fDlVvan~~ 234 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL--EQPIEGKADVIVANIL 234 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc--ccccCCCceEEEEecC
Confidence 34678999 99999999988877665799999999999999998632 245555653 3344679999999865
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.. ...+++.++.++|||||+++++..... ..+++.+.+++. |+++.....
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi~~~-------------------~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGILET-------------------QAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeCcHh-------------------HHHHHHHHHHcc-CceeeEecc
Confidence 32 346889999999999999999743211 025667777766 887766544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=129.48 Aligned_cols=127 Identities=8% Similarity=0.059 Sum_probs=94.3
Q ss_pred ccccccccCCccchhHHH-HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----
Q 023974 86 IDWSFLDSDELNFKEHIQ-RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---- 158 (274)
Q Consensus 86 ~~Wd~~~~~~~~~~~~~~-w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---- 158 (274)
..|...++..-|+..... -.+-+++.+....+.+|| +|||||.++..+++++| .+|++||.|+.|++.|+++.
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~ 276 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM 276 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 456766666555432111 234566666655567999 99999999999999887 89999999999999999763
Q ss_pred ----CCceEEEeeccCCCCCCCCccEEEecccCcCCC-----CHHHHHHHHHHhcCCCCEEEEE
Q 023974 159 ----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF-----PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 159 ----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~-----d~~~al~el~RvLKPGGrlvIs 213 (274)
.+++++.+|+.+- +.+++||+|+|+--+|... ...+.++++.|+|||||+|+|.
T Consensus 277 ~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 277 PEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2468888887542 2346899999985444321 2347889999999999999996
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=121.66 Aligned_cols=170 Identities=18% Similarity=0.081 Sum_probs=116.9
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCC--CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023974 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDE--SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~--~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
.-|+|..+++|+.......--++ -..+.+..+.+++ ..-|| ||||||--+..|...+ ...+|||+|+.||++|
T Consensus 13 lfYnd~eA~kYt~nsri~~IQ~e---m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 13 LFYNDTEAPKYTQNSRIVLIQAE---MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQA 88 (270)
T ss_pred eeechhhhhhccccceeeeehHH---HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHH
Confidence 67888888888875555433222 2345555555555 66788 9999998888887777 5899999999999999
Q ss_pred HHhCCCceEEEeec-cCCCCCCCCccEEEecccCcCCC-------CHH----HHHHHHHHhcCCCCEEEEEc-CCChhHH
Q 023974 155 KEKYDTVKCWQGEL-IYVPDKWGPLDVVFLYFLPAMPF-------PLD----QVFETLANRCSPGARVVISH-PQGREAL 221 (274)
Q Consensus 155 r~k~~~v~~~~gDa-e~LPf~~~sFD~V~~~f~l~~~~-------d~~----~al~el~RvLKPGGrlvIs~-~~gr~~l 221 (274)
.++.-.-.++.+|. +-|||..++||.|++-.+++|.- +|. ..|..++.+|++|+|.|+.- |...
T Consensus 89 ~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~--- 165 (270)
T KOG1541|consen 89 VERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE--- 165 (270)
T ss_pred HHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch---
Confidence 97432245566665 45999999999999776666632 232 46778999999999999852 2111
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec-----CCeEEEEEEe
Q 023974 222 QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE-----SGFYLVVLKF 269 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~-----~~~yl~v~~~ 269 (274)
+ ..+.+.+...++||.--..+|. +.-|++|+..
T Consensus 166 ~---------------q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL~~ 203 (270)
T KOG1541|consen 166 A---------------QIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVLMT 203 (270)
T ss_pred H---------------HHHHHHHHHHhhccCCceeeecccccccceeEEEEec
Confidence 1 1245666777788854344443 3446667643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-12 Score=121.82 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=96.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY-- 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~-- 184 (274)
.++.+|| +|||||.++..+++..+ .+|+|+|+|++|++.|+++. .+++++++|+.+ ++.+++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCC
Confidence 3457999 99999999999998876 79999999999999999763 248899999854 2345689999997
Q ss_pred ccCcC---------CCC--------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023974 185 FLPAM---------PFP--------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 185 f~l~~---------~~d--------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
+.... ..+ .+..++++.++|||||++++.... +.++
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~---------------------~~~~ 257 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN---------------------SMEA 257 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------------CHHH
Confidence 22110 001 246688899999999999986431 1246
Q ss_pred HHHHHHhCCCcEeEEEecCCeEEEE
Q 023974 242 LQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
+.+++.+.||.-..+....+...++
T Consensus 258 v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 258 LEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred HHHHHHhCCCceeeecCCCcEEEEE
Confidence 7777888899877776666654443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.5e-15 Score=132.55 Aligned_cols=176 Identities=11% Similarity=0.017 Sum_probs=126.0
Q ss_pred ccccccccccccccc-ccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023974 77 VVNFEDFTEIDWSFL-DSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~-~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
+...+|..+.+.|.. ...... ...+.++++|..++..+-.++| +|||||-++..|.... .+++|||+|..||++|
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y--~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA 163 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGY--SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKA 163 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHH
Confidence 334444455547632 222212 3445788888888887778999 9999999999997765 5999999999999999
Q ss_pred HHhCCCceEEEeeccC-CC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccc
Q 023974 155 KEKYDTVKCWQGELIY-VP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVI 232 (274)
Q Consensus 155 r~k~~~v~~~~gDae~-LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~s 232 (274)
.+|----...++|+.. ++ ..++.||+|++.-++-..-+++.++.-....|+|||.|+++-.....+ ..+ . ...+
T Consensus 164 ~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~-~~f--~-l~ps 239 (287)
T COG4976 164 HEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD-GGF--V-LGPS 239 (287)
T ss_pred HhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC-CCe--e-cchh
Confidence 9995433445677664 33 567899999999888888899999999999999999999974332221 000 0 0001
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 233 VSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
...-.+...+..+++..||+++..++.
T Consensus 240 ~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 240 QRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hhhccchHHHHHHHHhcCceEEEeecc
Confidence 112245678899999999999888763
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=120.63 Aligned_cols=132 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
.++.++......++.+|| +|||+|.++..++...+ .+|+|+|+|+.|++.|+++. .++.++++|+.+ ++.++
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~ 174 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGG 174 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCC
Confidence 444555455566778999 99999999999988876 89999999999999999864 368999999854 23368
Q ss_pred CccEEEecc--cCcC------------------------CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc
Q 023974 177 PLDVVFLYF--LPAM------------------------PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD 230 (274)
Q Consensus 177 sFD~V~~~f--~l~~------------------------~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~ 230 (274)
+||+|+++- .... ....+++++++.++|||||++++....
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-------------- 240 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-------------- 240 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--------------
Confidence 999999862 1110 011356788888999999999995421
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 231 VIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
...+++.+++++.||..+..
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEE
Confidence 11356888889999975554
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=131.12 Aligned_cols=108 Identities=12% Similarity=0.128 Sum_probs=85.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC--CCCCCc
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP--DKWGPL 178 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP--f~~~sF 178 (274)
.++..+++.+|++|| +|||||..+..+++..+ ++|+|+|.|+.|++.++++.. +++++++|+.+++ +.+++|
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 344456788999999 99999999999988765 799999999999999998743 3688999998875 346789
Q ss_pred cEEEecc---c---C------cCCCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 179 DVVFLYF---L---P------AMPFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f---~---l------~~~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|.|++.. + + +|... .++++.+++++|||||++++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999541 1 1 11111 2378999999999999999865
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=118.89 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~s 177 (274)
....+++.+.+.++.+|| ||||||.++..+++.. .+|+++|.+++|++.|+++. .++++.++|+.+.....++
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 445667778888999999 9999999998887765 48999999999999999863 4688999998664334589
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
||+|++.....++ .+++.+.|||||++++...
T Consensus 145 fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 145 FDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 9999998765443 4567889999999999643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=126.91 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=84.5
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHH--HhCC-CcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVV--ESSP-SLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~--~~~~-~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf~~~s 177 (274)
+......+.++|+ ||||.|-++..+. +..| ++++|+|.+++|++.||+.. +.++|.++|+.+++...+.
T Consensus 116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE 195 (296)
T ss_pred HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence 3333334778999 9999886655433 3356 79999999999999999865 2489999999987644688
Q ss_pred ccEEEecccCcCC-CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 178 LDVVFLYFLPAMP-FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 178 FD~V~~~f~l~~~-~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
||+|++...+.|. .+++++++.++++|||||.+++...
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9999999444442 6999999999999999999999743
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=128.27 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=85.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
-...+++.+.+.++++|| ||||||.++..+++..+ +.|+|||++++|++.|+++. .++.++++|+.+.+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~ 147 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF 147 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence 445677777888999999 99999999999988643 57999999999999998752 46889999998877667
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++||+|++.++..++ ...+.++|||||++++.
T Consensus 148 ~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDEV------PETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHHh------HHHHHHhcCCCCEEEEE
Confidence 899999998776554 23467789999999883
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=112.41 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf 173 (274)
..+.+.-.++.+.+.++++++ ||||||.++..++..+| ++|+|+|-++++++..+++ .+++..+.||+.+.-.
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 334555668889999999999 99999999999997778 9999999999999888764 5688999999977422
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+||+||+.-+ . +.+++++.+...||||||+|+.
T Consensus 99 ~~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 99 DLPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEE
Confidence 2238999999966 3 4588999999999999999996
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=127.64 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=85.6
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC----CCC
Q 023974 108 IISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP----DKW 175 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP----f~~ 175 (274)
+...+++.+|++|| +|||+|..+..+++.. + ++|+|+|.++.|++.++++. .+++++++|+.+++ +..
T Consensus 244 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 244 VAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 34456788999999 9999999999888763 3 79999999999999998763 46889999999887 456
Q ss_pred CCccEEEec---c---cCcCCCC----------------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 176 GPLDVVFLY---F---LPAMPFP----------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 176 ~sFD~V~~~---f---~l~~~~d----------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
++||.|++. . .++.-++ ..+.+.+++++|||||+|+.++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 899999963 1 2222222 3578999999999999999864
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-13 Score=108.93 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCC--CCCCCccEEEec--c
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVP--DKWGPLDVVFLY--F 185 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LP--f~~~sFD~V~~~--f 185 (274)
|.+|| +|||+|.++..+++.+..+++|+|+++..++.|+++.+ +++++++|+.+++ +.+++||+|+++ |
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899 99999999999988875699999999999999998743 4799999999986 788999999998 4
Q ss_pred cCcCCC------CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 186 LPAMPF------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 186 ~l~~~~------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
..+... ...++++++.+.|||||++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 433211 23578999999999999999864
|
... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=117.05 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred HHHHHH-hCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------
Q 023974 105 IDQIIS-AGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------- 172 (274)
Q Consensus 105 ~~~ll~-~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------- 172 (274)
+.++.+ ...+.++++|| +|||||.++..++++. + ++|+|+|+|+.| +.+++++.++|+.+.+
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHH
Confidence 334433 24668899999 9999999999888764 3 689999999976 4578899999987753
Q ss_pred CCCCCccEEEecccCc----CCCC-------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 173 DKWGPLDVVFLYFLPA----MPFP-------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~----~~~d-------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+++||+|++...++ |..+ .+.++++++++|||||+++|...
T Consensus 94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 4567899999864321 2112 36899999999999999999533
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=123.19 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=84.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCcc
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD 179 (274)
+-+++.+......+|| +|||+|.++..++++.+ .+|+++|+|+.||+.|+++.. ..++..+|+.. ..++.||
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fD 263 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFD 263 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCcc
Confidence 3445555544556999 99999999999998877 799999999999999987532 34677788754 2368899
Q ss_pred EEEecccCcCC-----CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMP-----FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~-----~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+++.-+|.. ...++.++++.+.|||||+|+|.
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 99999777652 23578899999999999999884
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=121.41 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=95.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec--ccCcC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY--FLPAM 189 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~ 189 (274)
...+.+|| +|||||.++..++++.+ .+|+|||+++.|++.|+++.++++++++|+.+++. +..||+|+++ |....
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccC
Confidence 34557999 99999999888877653 79999999999999999999999999999998763 5789999997 44333
Q ss_pred CCC------------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCC
Q 023974 190 PFP------------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 190 ~~d------------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF 251 (274)
..+ .++.++...++|+|+|.+.+.- .++. + | +.-.+++|..++++++||
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss~~----~---y-----~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SGRP----Y---Y-----DGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-eccc----c---c-----cccCCHHHHHHHHHhcCc
Confidence 322 2445566788888999777651 1111 1 1 122457899999999999
Q ss_pred cE
Q 023974 252 QI 253 (274)
Q Consensus 252 ~~ 253 (274)
..
T Consensus 208 ~~ 209 (279)
T PHA03411 208 VT 209 (279)
T ss_pred Ee
Confidence 64
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-13 Score=128.43 Aligned_cols=109 Identities=10% Similarity=0.060 Sum_probs=85.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----C--ceEEEeeccCCCC--CCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----T--VKCWQGELIYVPD--KWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~--v~~~~gDae~LPf--~~~ 176 (274)
.++..+++.+|++|| +|||+|..+..+++..+ ++|+|+|++++|++.++++.. . +.+..+|+..+++ .++
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 445556888999999 99999999999888755 799999999999999987643 1 2346788776664 568
Q ss_pred CccEEEec-----cc-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 177 PLDVVFLY-----FL-PAMPFP----------------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~-----f~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||.|++. ++ ++..++ ..++|.+++++|||||+|++++.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 89999852 33 443333 35799999999999999999643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=128.31 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=105.8
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC-CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP-f~~~sFD~ 180 (274)
..+++.+|.+|| +|||||..+..+++.. + ++|+|+|+|+.||+.++++. .+++++++|+.+++ +.+++||.
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~ 310 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR 310 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE
Confidence 346788999999 9999999998888763 3 79999999999999998763 35789999999887 55788999
Q ss_pred EEec-----cc-CcCCC----------------CHHHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHHhhCccccc
Q 023974 181 VFLY-----FL-PAMPF----------------PLDQVFETLANRCSPGARVVISHPQG-----REALQKQRKQFPDVIV 233 (274)
Q Consensus 181 V~~~-----f~-l~~~~----------------d~~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~~~~~~~si 233 (274)
|++. ++ ++.-+ ...++|.++++.|||||+++.++..- ...+..+-...++...
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 9953 22 22211 12567899999999999999864321 2222222222222211
Q ss_pred ccCCC-HHH--HHHHHHhCCCcEeEEEecCCeEEEEEEec
Q 023974 234 SDLPD-QMT--LQKAAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 234 ~~fps-~~e--L~~ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
..... .++ +.......||++......++||++.++|.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~dGFf~a~L~k~ 430 (431)
T PRK14903 391 IDIRDKLEEFEVEGIWDGYGFLMLPDETLTPFYVSVLRKM 430 (431)
T ss_pred ecccccccccccccccCCCcEEECcCCCCCcEEEEEEEeC
Confidence 11110 000 00011234565554445679999999975
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=116.12 Aligned_cols=131 Identities=12% Similarity=0.164 Sum_probs=96.1
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--CceEEEeeccC-CCC-CCCCccEEEec--ccC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIY-VPD-KWGPLDVVFLY--FLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~-LPf-~~~sFD~V~~~--f~l 187 (274)
++.+|| +|||+|.++..+++..+ .+|+|+|.|+.|++.|+++.. +++++++|+.+ ++. ..+.||+|+++ |..
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 345899 99999999999987765 689999999999999998743 36889999875 331 13679999998 332
Q ss_pred c----CC-C---------------C----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHH
Q 023974 188 A----MP-F---------------P----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 188 ~----~~-~---------------d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
. .. + | .++.++.+.+.|||||++++.+...+ .+++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~--------------------~~~v~ 225 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ--------------------APLAV 225 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch--------------------HHHHH
Confidence 1 00 0 1 23666777799999999999754321 24677
Q ss_pred HHHHhCCCcEeEEEecCCeEEEEE
Q 023974 244 KAAGNHCFQIDNFVDESGFYLVVL 267 (274)
Q Consensus 244 ~ll~~aGF~~v~~~d~~~~yl~v~ 267 (274)
++|++.||+. .+...+++|-.|.
T Consensus 226 ~~l~~~g~~~-~~~~~~~~~~~~~ 248 (251)
T TIGR03704 226 EAFARAGLIA-RVASSEELYATVV 248 (251)
T ss_pred HHHHHCCCCc-eeeEcccccceee
Confidence 8899999975 4556666676664
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-13 Score=124.45 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=79.6
Q ss_pred HHHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE----EeeccCCCCC--C
Q 023974 104 RIDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW----QGELIYVPDK--W 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~----~gDae~LPf~--~ 175 (274)
|...+. ...++++++ ||||||..+..++.. +..|+|+|+|++||++|+++.+...+. ..+.+-.++. +
T Consensus 23 w~~~ia---~~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 23 WFKKIA---SRTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGE 98 (261)
T ss_pred HHHHHH---hhCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCC
Confidence 777765 345666555 999999544455444 369999999999999999887654332 3333445555 8
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvI 212 (274)
+|+|.|+++-++||+ |++++++++.|||||.| .++|
T Consensus 99 ~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 999999999999998 89999999999999988 4444
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-12 Score=120.35 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCce----EEEeeccCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVK----CWQGELIYVP 172 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~----~~~gDae~LP 172 (274)
.+.+|+.+.+. ++.+|| +|||||.++.+.++.|..+|+|+|+.+.-++.|+++. .++. .-..+....+
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~ 225 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP 225 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc
Confidence 45556655553 788999 9999999999998888888999999999999999863 2333 2334433333
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
. .++||+|++|- +..+ ..+...++.+.|||||+++.+- .+... .+.+.+.++++||.
T Consensus 226 ~-~~~~DvIVANI-LA~v--l~~La~~~~~~lkpgg~lIlSG-----Il~~q--------------~~~V~~a~~~~gf~ 282 (300)
T COG2264 226 E-NGPFDVIVANI-LAEV--LVELAPDIKRLLKPGGRLILSG-----ILEDQ--------------AESVAEAYEQAGFE 282 (300)
T ss_pred c-cCcccEEEehh-hHHH--HHHHHHHHHHHcCCCceEEEEe-----ehHhH--------------HHHHHHHHHhCCCe
Confidence 2 36999999984 3222 3578889999999999999972 22222 25677888899999
Q ss_pred EeEEEecCCeEEEEEEe
Q 023974 253 IDNFVDESGFYLVVLKF 269 (274)
Q Consensus 253 ~v~~~d~~~~yl~v~~~ 269 (274)
++.....++-.-++++|
T Consensus 283 v~~~~~~~eW~~i~~kr 299 (300)
T COG2264 283 VVEVLEREEWVAIVGKR 299 (300)
T ss_pred EeEEEecCCEEEEEEEc
Confidence 99887776655555554
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-12 Score=123.48 Aligned_cols=134 Identities=12% Similarity=0.154 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCC-CC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPD-KW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf-~~ 175 (274)
.++..+++.+ .++.+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++.. +++++++|+.+..+ .+
T Consensus 240 ~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~ 317 (423)
T PRK14966 240 HLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE 317 (423)
T ss_pred HHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence 3555555443 4567999 99999999999887665 799999999999999998632 58899999865432 24
Q ss_pred CCccEEEec--ccCcCC-------------------CC----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc
Q 023974 176 GPLDVVFLY--FLPAMP-------------------FP----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD 230 (274)
Q Consensus 176 ~sFD~V~~~--f~l~~~-------------------~d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~ 230 (274)
++||+|+++ +..... .| .++.++++.+.|+|||++++.....
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~------------- 384 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD------------- 384 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------
Confidence 689999997 322110 01 2355666678999999998754321
Q ss_pred cccccCCCHHHHHHHHHhCCCcEeE-EEe
Q 023974 231 VIVSDLPDQMTLQKAAGNHCFQIDN-FVD 258 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v~-~~d 258 (274)
..+++.+++++.||..++ ++|
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kD 406 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPD 406 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEc
Confidence 136788899999997654 445
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-12 Score=116.90 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCC
Q 023974 103 QRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPD 173 (274)
Q Consensus 103 ~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf 173 (274)
.++..++..+. ..+..+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++. . +++++++|+.+ ++
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~ 178 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PL 178 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cC
Confidence 35555554432 23336999 99999999999988776 79999999999999999752 2 38899999866 34
Q ss_pred CCCCccEEEec--ccCc-----------CCC------------CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 174 KWGPLDVVFLY--FLPA-----------MPF------------PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 174 ~~~sFD~V~~~--f~l~-----------~~~------------d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.+++||+|+++ +... +.+ ..++.++++.+.|+|||.+++.+..
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 44589999997 2211 111 2456788899999999999986543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-13 Score=119.89 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=82.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~ 174 (274)
.-..++++.+.+++|++|| ||||||.+++.|++. ++ ++|++||..+++.+.|+++. .++.+++||+..-...
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 3567889999999999999 999999999999886 55 68999999999999999873 4789999998775546
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++||.|++.++...+ | ..+.+.||+||+||+-
T Consensus 139 ~apfD~I~v~~a~~~i--p----~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEI--P----EALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchH--H----HHHHHhcCCCcEEEEE
Confidence 7899999999777433 2 3355569999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-12 Score=115.78 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
.+++.+..-++.++| +|||.|+.+.+|+++|- .|+|+|.|+..|+++++. .-+++..+.|+++..+. +.||+|
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 344455665677999 99999999999999985 999999999999876642 22488899999988874 789999
Q ss_pred EecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccccc-ccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 182 FLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIV-SDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 182 ~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si-~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++..++++.. ...+.++.|...++|||.++|....... .++.... .-+....||...+. ||+++.|.+
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~-------d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP-------DYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S-------SS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC-------CCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 9876665543 4457899999999999999883221100 1111111 12335688988877 799998876
Q ss_pred cC
Q 023974 259 ES 260 (274)
Q Consensus 259 ~~ 260 (274)
+-
T Consensus 170 ~~ 171 (192)
T PF03848_consen 170 DV 171 (192)
T ss_dssp EE
T ss_pred cc
Confidence 53
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=125.09 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=82.1
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+..+.+.+|++|| +|||+|..+..+++.. . ++|+|+|+|++|++.++++. .+++++++|+..++ .+++||+
T Consensus 243 ~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 243 CLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCE
Confidence 3456778899999 9999999888887653 3 69999999999999998763 35789999999886 5679999
Q ss_pred EEec-----cc-C-cC-----CCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VFLY-----FL-P-AM-----PFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~-----f~-l-~~-----~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|++- .+ + ++ ..+ ..++|.++++.|||||++++++
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9952 11 1 11 111 2368999999999999999965
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-13 Score=113.46 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=80.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEE
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V 181 (274)
++.+...++.+|| +|||+|.++..+++.++ .+|+++|+++.+++.|++.. .+++++.+|+-+- ..+++||+|
T Consensus 24 ~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~I 102 (170)
T PF05175_consen 24 LDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKFDLI 102 (170)
T ss_dssp HHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCEEEE
T ss_pred HHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccceeEE
Confidence 3333333678999 99999999999999887 57999999999999998752 3378889998553 237999999
Q ss_pred EecccCcCCCC-----HHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFP-----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d-----~~~al~el~RvLKPGGrlvIs 213 (274)
+++--++...+ .++.+++..+.|||||++++.
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99954444333 578899999999999999763
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=120.34 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=82.4
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCc
Q 023974 108 IISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sF 178 (274)
+...+.+.++.+|| +|||+|..+..+++.. + ++|+|+|+++.|++.++++. .+++++++|+.+++. ..++|
T Consensus 242 v~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 242 VAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 34456778899999 9999999999888763 4 89999999999999998753 458899999988742 23789
Q ss_pred cEEEecc---cCc----CC-----CC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 179 DVVFLYF---LPA----MP-----FP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f---~l~----~~-----~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+|++.. +.. ++ .+ ..++++++.++|||||+|+.++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9999752 111 11 11 1357999999999999999753
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=94.62 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=80.9
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC-CCCCccEEEecccCcC-C
Q 023974 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD-KWGPLDVVFLYFLPAM-P 190 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf-~~~sFD~V~~~f~l~~-~ 190 (274)
+|| +|||+|.++..+++....+++++|.++.+++.+++. ...++++.+|+.+.+. ..++||+|+++..+++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 478 999999999888773237999999999999988822 3457899999988764 5688999999988877 7
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+..+.++.+.+.|||||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=112.85 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~s 177 (274)
-..++++.+.++++++|| ||||+|..++.|++.. ++|+.||..++..+.|+++ +.|+.+++||...=-.+.++
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 456888899999999999 9999999999998876 4999999999999999986 56799999999774446799
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||.|++..+.-.+ |+..++ -|||||+++|-
T Consensus 139 yD~I~Vtaaa~~v--P~~Ll~----QL~~gGrlv~P 168 (209)
T COG2518 139 YDRIIVTAAAPEV--PEALLD----QLKPGGRLVIP 168 (209)
T ss_pred cCEEEEeeccCCC--CHHHHH----hcccCCEEEEE
Confidence 9999998766554 234444 59999999994
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=115.38 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=93.7
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--ccC
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--FLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f~l 187 (274)
.+|| +|||||.++..++...+ .+|+|+|+|+.|++.|+++. .+++++++|+.+. +.+++||+|+++ +..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 6899 99999999999988876 79999999999999999763 2488999998542 235689999987 211
Q ss_pred -----------cCCC------------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHH
Q 023974 188 -----------AMPF------------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQK 244 (274)
Q Consensus 188 -----------~~~~------------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ 244 (274)
++.+ ..+++++++.++|||||++++..... ++++.+
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---------------------~~~~~~ 272 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---------------------RVHLEE 272 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---------------------HHHHHH
Confidence 1111 12467889999999999999853321 234666
Q ss_pred HHHhCCCcEeEEEecCCeEEEEEEec
Q 023974 245 AAGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 245 ll~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
++.+.||.-... ...+.++.+++++
T Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 297 (307)
T PRK11805 273 AYPDVPFTWLEF-ENGGDGVFLLTRE 297 (307)
T ss_pred HHhhCCCEEEEe-cCCCceEEEEEHH
Confidence 677777765444 3455556665544
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=107.49 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=86.0
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCccE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+++++.+++.++++|| +|||+|.++..+++++ .+|+|||+++.|++.++++. ++++++++|+.++++.+..||.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence 45778888889999999 9999999999998875 59999999999999999885 4689999999999988888999
Q ss_pred EEecccCcCCCCHHHHHHHHHHh--cCCCCEEEEEc
Q 023974 181 VFLYFLPAMPFPLDQVFETLANR--CSPGARVVISH 214 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~Rv--LKPGGrlvIs~ 214 (274)
|+++.-++.. .+.+..+.+. +.+||.+++.+
T Consensus 81 vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYNIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCcccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 9998544432 3445544433 45888888854
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=114.44 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=127.5
Q ss_pred ccccccccccccC-CccchhHHHHHHHHHHhC-CCCCCC--eEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHH
Q 023974 82 DFTEIDWSFLDSD-ELNFKEHIQRIDQIISAG-EIDESS--KVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAG 153 (274)
Q Consensus 82 ~~~~~~Wd~~~~~-~~~~~~~~~w~~~ll~~~-~~~~~~--rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~ 153 (274)
.-..+.||..+-. ...-.-++.|+.+=...+ .....+ ++| ||||.|..+..|++..+ -.|.+.|+|+.-++.
T Consensus 33 ~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred cchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 3466779955443 222235666775544333 333333 799 99999999888877653 689999999999999
Q ss_pred HHHhCC------CceEEEeeccC--CCCCCCCccEEEecccCcC--CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH
Q 023974 154 IKEKYD------TVKCWQGELIY--VPDKWGPLDVVFLYFLPAM--PFPLDQVFETLANRCSPGARVVISHPQGREALQK 223 (274)
Q Consensus 154 Ar~k~~------~v~~~~gDae~--LPf~~~sFD~V~~~f~l~~--~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~ 223 (274)
.++.-. ...++..+.++ -|...+++|.|++-|++-- +..-..|+.+++++|||||.|++.+ +|+.-+.+
T Consensus 113 vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD-Yg~~Dlaq 191 (264)
T KOG2361|consen 113 VKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD-YGRYDLAQ 191 (264)
T ss_pred HHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee-cccchHHH
Confidence 987632 12333333333 3567799999999887654 3455699999999999999999984 66777777
Q ss_pred HHhhCccc-----------ccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEecC
Q 023974 224 QRKQFPDV-----------IVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 224 ~~~~~~~~-----------si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~~~ 271 (274)
++..-..+ ....|-+.++|..++.++||..++..-+ .-++|-|++.
T Consensus 192 lRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~--~rl~vNr~k~ 248 (264)
T KOG2361|consen 192 LRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVD--CRLLVNRKKQ 248 (264)
T ss_pred HhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccce--eeeeeehhcc
Confidence 76442111 2245778999999999999987654333 3455555543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.6e-12 Score=114.63 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=82.8
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEE
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
.+.+.++++|| +|||+|..+..+++.. + +.|+|+|.++.|++.++++. .+++++++|+..++...++||+|+
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEE
Confidence 45778999999 9999999998887763 3 79999999999999998763 467899999998877677899999
Q ss_pred ec---ccC---cCCC----------------CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LY---FLP---AMPF----------------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~---f~l---~~~~----------------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+. .+. +.-+ ...++|+++.+.|||||+|+.++
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 64 121 1111 12358999999999999999864
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-11 Score=111.47 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=91.8
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CC-ceEEEeeccCCCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DT-VKCWQGELIYVPDKWG 176 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~-v~~~~gDae~LPf~~~ 176 (274)
..++..+++.+|+||| .|+|+|.++.+|++. ++ ++|+..|.-+++++.|+++. .+ +.+..+|+.+.-+.+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-
Confidence 3677889999999999 999999999999974 77 99999999999999999874 33 788889998877655
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.||+||. -++||-++++.+..+|||||++++..|.
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9999995 3468999999999999999999997664
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=121.22 Aligned_cols=125 Identities=11% Similarity=0.141 Sum_probs=90.6
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--c
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--F 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f 185 (274)
++.+|| +|||||.++..++...+ .+|+|+|+|+.|++.|+++. .+++++++|+.+ ++.+++||+|+++ |
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 346899 99999999998887755 79999999999999999762 247899999754 2335689999996 2
Q ss_pred cCcCC------------------------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023974 186 LPAMP------------------------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 186 ~l~~~------------------------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
..... ...++.++++.++|||||++++..... ..+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~--------------------q~~~ 276 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK--------------------QEEA 276 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc--------------------hHHH
Confidence 22110 012345678889999999999853321 1357
Q ss_pred HHHHHHhCCCcEeE-EEecCC
Q 023974 242 LQKAAGNHCFQIDN-FVDESG 261 (274)
Q Consensus 242 L~~ll~~aGF~~v~-~~d~~~ 261 (274)
+.+++++.||..+. +.|-.+
T Consensus 277 v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 277 VTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred HHHHHHhcCCCceEEEecCCC
Confidence 78888899997554 455333
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-12 Score=116.69 Aligned_cols=142 Identities=10% Similarity=0.090 Sum_probs=117.3
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CC--ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DT--VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~--v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
...++ ||||-|.+.+.|...+-.+++-+|.|..|++.++.-. |. +....+|-|.|||.+++||+|+++.++||..|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND 152 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence 34789 9999999999998876679999999999999998753 44 45678999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc----------ccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 193 LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP----------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~----------~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+...+..+...|||.|.|+-+ ..+...+.+++-... ..++..|....++-.++..+||.....-.+
T Consensus 153 LPg~m~~ck~~lKPDg~Fias-mlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 153 LPGSMIQCKLALKPDGLFIAS-MLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred CchHHHHHHHhcCCCccchhH-HhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 999999999999999999765 444556666653321 125677888899999999999988765333
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=115.87 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=94.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--C--ceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--T--VKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~--v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
..++.+|| ||||||.++...++.|..+|+|+|+++..++.|+++.. + .++......+.+ .+.||+|++|-...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~--~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLV--EGKFDLVVANILAD 236 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTC--CS-EEEEEEES-HH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccc--cccCCEEEECCCHH
Confidence 45778999 99999999988888887899999999999999998631 1 133222333333 49999999983321
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLK 268 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~ 268 (274)
-+......+.+.|||||+|+++-.... ..+++.+.+++ ||+++....+++-..++++
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~-------------------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEE-------------------QEDEVIEAYKQ-GFELVEEREEGEWVALVFK 293 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGG-------------------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHH-------------------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEE
Confidence 235677788999999999999722111 13577788877 9999888877776666666
Q ss_pred e
Q 023974 269 F 269 (274)
Q Consensus 269 ~ 269 (274)
|
T Consensus 294 K 294 (295)
T PF06325_consen 294 K 294 (295)
T ss_dssp E
T ss_pred e
Confidence 5
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=111.09 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=80.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCCCCccEEEec
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKWGPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~~sFD~V~~~ 184 (274)
..++.+|| ||||+|.++..+++..| .+|++||++++|++.|++.+ ++++++.+|+.+ ++...++||+|++.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 34567999 99999999999988777 89999999999999999864 357899999865 34445789999986
Q ss_pred cc-CcCCC---CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 FL-PAMPF---PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~-l~~~~---d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.. -...+ ...+.++++.++|+|||+++|..
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 32 11111 23699999999999999999963
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-12 Score=123.15 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=103.0
Q ss_pred HHHHHHHhCCCC------CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--------C-------C
Q 023974 104 RIDQIISAGEID------ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--------D-------T 160 (274)
Q Consensus 104 w~~~ll~~~~~~------~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--------~-------~ 160 (274)
|++.+|=..-.. ++.+|| +|||- |++..+.. .+...++|+|+|.+-|++|++|+ . .
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 777654222233 788999 99995 56666653 34479999999999999999998 1 1
Q ss_pred ceEEEeeccC------CCCCCCCccEEEecccCcCCCC----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh----
Q 023974 161 VKCWQGELIY------VPDKWGPLDVVFLYFLPAMPFP----LDQVFETLANRCSPGARVVISHPQGREALQKQRK---- 226 (274)
Q Consensus 161 v~~~~gDae~------LPf~~~sFD~V~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~---- 226 (274)
..|+.+|... ++.....||+|.|-|++|.... -+..|+.+...|||||+|+.+.+.+...+..++.
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~ 202 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSN 202 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEE
T ss_pred hheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhccc
Confidence 4677888753 3333469999999999997542 2357889999999999999987755443333322
Q ss_pred hC----c--------------------------c---cccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023974 227 QF----P--------------------------D---VIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 227 ~~----~--------------------------~---~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
.. . + .....+...+.+.+++++.|++.+...+-.+
T Consensus 203 ~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 203 SEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp CCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred ccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 00 0 0 0123466789999999999999887665443
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=115.96 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccC-CCCCCCCcc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~-LPf~~~sFD 179 (274)
....+|| ||||+|..+..+++..+ .+|++||++++|++.|++. -++++++.+|+.+ ++..++.||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4446999 99999998888887655 7999999999999999961 2468899999987 566678999
Q ss_pred EEEecccCcCC-----CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 180 VVFLYFLPAMP-----FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~-----~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++.+.-... .--.+.++.+.+.|+|||.+++... +. ... ... ...+.+.++++||.+.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~-sp-~~~--~~~-----------~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN-SP-ADA--PLV-----------YWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC-Ch-hhh--HHH-----------HHHHHHHHHHhCCceE
Confidence 99988421110 0115789999999999999988522 11 100 000 1236678888888877
Q ss_pred EEEe
Q 023974 255 NFVD 258 (274)
Q Consensus 255 ~~~d 258 (274)
.|..
T Consensus 294 ~y~t 297 (374)
T PRK01581 294 SYHT 297 (374)
T ss_pred EEEE
Confidence 7665
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=110.62 Aligned_cols=107 Identities=9% Similarity=0.178 Sum_probs=86.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC--CCCCCccEE
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP--DKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP--f~~~sFD~V 181 (274)
..+....+|| +|||+|.+...++++.+ .+|+|||+.++|.+.|++.. ..++++++|+.++. ..-.+||+|
T Consensus 40 ~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 40 APVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred cccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEE
Confidence 3455578999 99999999999999865 89999999999999999864 35899999999875 334579999
Q ss_pred Eec--ccCcCCC----------------CHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 182 FLY--FLPAMPF----------------PLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 182 ~~~--f~l~~~~----------------d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
+|| |.-.... +.++.++...+.|||||++++-++..+
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 999 4332221 577788888999999999999876533
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=114.37 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=79.3
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeeccC-CCCCCCCccEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGELIY-VPDKWGPLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDae~-LPf~~~sFD~V 181 (274)
+...+|| ||||+|.++..+++... .+|++||++++|++.|++.+ ++++++.+|+.+ ++..+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4557999 99999999998887644 79999999999999999854 357899999876 44456899999
Q ss_pred EecccCcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
++.....+... -++.++++.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 98754332221 267889999999999999984
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=105.99 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=100.9
Q ss_pred HHHHHHHhCCCCCCC-eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCC
Q 023974 104 RIDQIISAGEIDESS-KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~-rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~ 174 (274)
|+...+....+.+.+ ||| +|||.|.+...|++.+- +..+|||+|++-++.|+.. +++ ++|.|+|+.+-.+.
T Consensus 54 wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~ 133 (227)
T KOG1271|consen 54 WLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFL 133 (227)
T ss_pred HHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccc
Confidence 444444333466665 999 99999999999998864 7799999999999888753 444 89999999887777
Q ss_pred CCCccEEE-------ecccCcCCC-CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHH
Q 023974 175 WGPLDVVF-------LYFLPAMPF-PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 175 ~~sFD~V~-------~~f~l~~~~-d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll 246 (274)
.+.||+|. ++..+-... .+..-+..+.+.|+|||+++|+... -|.+||.+.+
T Consensus 134 ~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN--------------------~T~dELv~~f 193 (227)
T KOG1271|consen 134 SGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN--------------------FTKDELVEEF 193 (227)
T ss_pred ccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC--------------------ccHHHHHHHH
Confidence 78888886 222221211 2233456778899999999997442 2357899999
Q ss_pred HhCCCcEeEEEecC
Q 023974 247 GNHCFQIDNFVDES 260 (274)
Q Consensus 247 ~~aGF~~v~~~d~~ 260 (274)
+..||.....+..+
T Consensus 194 ~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTP 207 (227)
T ss_pred hcCCeEEEEeeccc
Confidence 99999888777666
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=120.34 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=93.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--C----------CCceEEEeeccC-CCCCCCCcc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--Y----------DTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--~----------~~v~~~~gDae~-LPf~~~sFD 179 (274)
++..+|| ||||+|.++..+++..+ .+|++||++++|++.||+. . |+++++.+|+.+ +...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999 99999999998887655 7999999999999999983 1 568899999987 444467999
Q ss_pred EEEecccCcCCCC-----HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 180 VVFLYFLPAMPFP-----LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 180 ~V~~~f~l~~~~d-----~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+|++.+.....++ -++.++++.+.|||||++++.... ...... .-.++.+.+++.||.+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~--~~~~~~-------------~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS--PYFAPK-------------AFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC--cccchH-------------HHHHHHHHHHHcCCEEE
Confidence 9999854322221 136889999999999999985321 110000 01356677777788544
Q ss_pred EEEec
Q 023974 255 NFVDE 259 (274)
Q Consensus 255 ~~~d~ 259 (274)
.+...
T Consensus 441 ~~~~~ 445 (521)
T PRK03612 441 PYHVN 445 (521)
T ss_pred EEEeC
Confidence 44443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-11 Score=106.44 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 104 RIDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
-++.+++.+.-.+...|+ +|||.+.++..+... ..|.-.|+-.. +-....+|+.++|++++++|+|
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~--~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~ 126 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK--HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVA 126 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------STTEEES-TTS-S--TT-EEEE
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC--ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEE
Confidence 356667776655555444 999999999776321 46999998752 3356789999999999999999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-cC
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-ES 260 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-~~ 260 (274)
+++..+ +-.|....++|..|+|||||.|.|.+. .++|.+.+++.+.+++.||+...-.. +.
T Consensus 127 VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV-----------------~SRf~~~~~F~~~~~~~GF~~~~~d~~n~ 188 (219)
T PF05148_consen 127 VFCLSL-MGTNWPDFIREANRVLKPGGILKIAEV-----------------KSRFENVKQFIKALKKLGFKLKSKDESNK 188 (219)
T ss_dssp EEES----SS-HHHHHHHHHHHEEEEEEEEEEEE-----------------GGG-S-HHHHHHHHHCTTEEEEEEE--ST
T ss_pred EEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEe-----------------cccCcCHHHHHHHHHHCCCeEEecccCCC
Confidence 988665 334888999999999999999999753 34556788999999999998876433 56
Q ss_pred CeEEEEEEecCC
Q 023974 261 GFYLVVLKFSKS 272 (274)
Q Consensus 261 ~~yl~v~~~~~~ 272 (274)
-|++..++|.+.
T Consensus 189 ~F~~f~F~K~~~ 200 (219)
T PF05148_consen 189 HFVLFEFKKIRK 200 (219)
T ss_dssp TEEEEEEEE-SS
T ss_pred eEEEEEEEEcCc
Confidence 667777777653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-11 Score=109.01 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=97.3
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCC--
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDK-- 174 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~-- 174 (274)
-.++..+++.||++|| .|+|+|.++.+|++. +| ++|+..|+.++..+.|++.+ .++++..+|+.+--|.
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4667789999999999 999999999999975 67 99999999999999999863 2589999999654332
Q ss_pred -CCCccEEEecccCcCCCCHHHHHHHHHHhc-CCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 175 -WGPLDVVFLYFLPAMPFPLDQVFETLANRC-SPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 175 -~~sFD~V~~~f~l~~~~d~~~al~el~RvL-KPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
++.+|+||.= +++|-+++..+.++| ||||++++.-|. +++. ....+.|++.||.
T Consensus 110 ~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~----ieQv---------------~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 110 LESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC----IEQV---------------QKTVEALREHGFT 165 (247)
T ss_dssp -TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS----HHHH---------------HHHHHHHHHTTEE
T ss_pred ccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC----HHHH---------------HHHHHHHHHCCCe
Confidence 4789999863 358889999999999 999999997553 3333 3455677888997
Q ss_pred EeEEEe
Q 023974 253 IDNFVD 258 (274)
Q Consensus 253 ~v~~~d 258 (274)
.++..+
T Consensus 166 ~i~~~E 171 (247)
T PF08704_consen 166 DIETVE 171 (247)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 665544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=112.77 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=84.4
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC----CC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY----VP 172 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~----LP 172 (274)
...+.+++.+.+.++.+|| +|||||.++..+++.+ .+|+|+|+|++|++.|+++. .+++|+++|+++ ++
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 3566777777888889999 9999999999998876 59999999999999999753 468999999975 34
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.+++||+|+++ -++.. ..+.++.+.+ ++|++.++|+.
T Consensus 363 ~~~~~fD~Vi~d-PPr~g--~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLD-PPRAG--AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEEC-cCCcC--hHHHHHHHHh-cCCCeEEEEEe
Confidence 556789999986 23332 3456665555 79999999973
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=108.73 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHhCCCCCCCeEE--EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 105 IDQIISAGEIDESSKVL--VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL--vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
++.+++.+...++.-|+ +|||-+.++. .. ...|...|+-+ .+-+.+.+|+.++|.+|++.|+++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec----------CCCceeeccccCCcCccCcccEEE
Confidence 46778888888888888 9999998775 11 24788888864 245667899999999999999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-cCC
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-ESG 261 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-~~~ 261 (274)
++..+ +..|....++|++|+|||||.++|..- .++|++..++.+.+...||.+....+ +..
T Consensus 234 ~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv-----------------~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~ 295 (325)
T KOG3045|consen 234 FCLSL-MGTNLADFIKEANRILKPGGLLYIAEV-----------------KSRFSDVKGFVRALTKLGFDVKHKDVSNKY 295 (325)
T ss_pred eeHhh-hcccHHHHHHHHHHHhccCceEEEEeh-----------------hhhcccHHHHHHHHHHcCCeeeehhhhcce
Confidence 77554 456899999999999999999999743 24567888899999999998665444 566
Q ss_pred eEEEEEEecC
Q 023974 262 FYLVVLKFSK 271 (274)
Q Consensus 262 ~yl~v~~~~~ 271 (274)
|++..++|..
T Consensus 296 F~lfefkK~~ 305 (325)
T KOG3045|consen 296 FTLFEFKKTP 305 (325)
T ss_pred EEEEEEecCC
Confidence 6777777654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=106.37 Aligned_cols=95 Identities=12% Similarity=-0.007 Sum_probs=75.6
Q ss_pred CCCeEE-EEcCchHHHHHHHHhC---C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec--ccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESS---P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY--FLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~---~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~ 188 (274)
.+.+|| +|||||.++..++++. + ..|+|||+++.|++.|++..+++.++++|+...++ +++||+|++| |...
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKI 127 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCc
Confidence 367999 9999999999887752 2 58999999999999999999999999999988775 5799999999 5533
Q ss_pred CCCC----------HHHHHHHHHHhcCCCCEEEE
Q 023974 189 MPFP----------LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d----------~~~al~el~RvLKPGGrlvI 212 (274)
...+ ..++++...|.++||+ +++
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 3222 4457778888565555 555
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-11 Score=111.94 Aligned_cols=158 Identities=13% Similarity=0.131 Sum_probs=114.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCch-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-----------ceEEEeeccC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSE-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-----------VKCWQGELIY 170 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-----------v~~~~gDae~ 170 (274)
|++..|=..-.++++.|| +|||-| ++..+. +.+-+.++|+|+++.-+++|++||.+ +.|+.||...
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~-kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWD-KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhh-hhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 777666455567888999 999985 666555 33337999999999999999998642 5788888743
Q ss_pred ------CCCCCCCccEEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh----Cc-cc----
Q 023974 171 ------VPDKWGPLDVVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ----FP-DV---- 231 (274)
Q Consensus 171 ------LPf~~~sFD~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~----~~-~~---- 231 (274)
+++++.+||+|.|-|++|... ..+.+|+.+++.|||||.++=+-|.....+.+++.. |. ++
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~ 263 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVT 263 (389)
T ss_pred hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEe
Confidence 566666699999999988743 456789999999999999988766543344443322 10 00
Q ss_pred ---------------------------ccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 232 ---------------------------IVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 232 ---------------------------si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+..-+..-+.+..++++.|.+.+....-.++
T Consensus 264 y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df 321 (389)
T KOG1975|consen 264 YEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADF 321 (389)
T ss_pred eeeecccccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHH
Confidence 2334556778899999999988876654444
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=106.53 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=76.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
+...+|| ||||+|.++..+++..+ .+|++||++++|++.|++.+ ++++++.+|+.+ +...+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3446999 99999999988877654 78999999999999999864 346788888754 333357999999
Q ss_pred ecccCcCC--CC--HHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMP--FP--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~--~d--~~~al~el~RvLKPGGrlvIs 213 (274)
+....... .+ ..++++.+.+.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 86432111 11 358899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=103.08 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=82.4
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----------------CCCceEEEeeccC
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----------------YDTVKCWQGELIY 170 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----------------~~~v~~~~gDae~ 170 (274)
+..+.+.++.||| .|||.|.-+..|+++|. +|+|||+|+.-++.+.++ ..++++++||+-+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC
Confidence 3445556778999 99999999999999885 899999999999998663 2357999999999
Q ss_pred CCCC---CCCccEEEecc-cCcCCC-CHHHHHHHHHHhcCCCCEEEEE
Q 023974 171 VPDK---WGPLDVVFLYF-LPAMPF-PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 171 LPf~---~~sFD~V~~~f-~l~~~~-d~~~al~el~RvLKPGGrlvIs 213 (274)
++.. .+.||+|.-.. ..+..+ .+.+-.+.|.+.|+|||++++.
T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9742 26899997543 333333 4558888999999999999874
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=107.12 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCCCCCCc
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf~~~sF 178 (274)
....+.+++.+++.++++|| ||||||.++..|+++++ +|+|+|++++|++.++++. +++++++||+.++++.+-.+
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 34677888888999999999 99999999999999875 9999999999999999886 57999999999998765336
Q ss_pred cEEEecc
Q 023974 179 DVVFLYF 185 (274)
Q Consensus 179 D~V~~~f 185 (274)
|.|++|-
T Consensus 107 ~~vv~Nl 113 (272)
T PRK00274 107 LKVVANL 113 (272)
T ss_pred ceEEEeC
Confidence 8888873
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-09 Score=100.12 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=86.9
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEEec--ccCcC
Q 023974 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLY--FLPAM 189 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~ 189 (274)
+|| +|||||.++..++...+ ..|+|+|+|+.-|+.|+++. .++.++++|+-+ --.+.||+|++| |....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~--~~~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE--PLRGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc--ccCCceeEEEeCCCCCCCc
Confidence 799 99999999999999887 79999999999999999763 234566666532 223499999999 66554
Q ss_pred ---C------CC--------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHH
Q 023974 190 ---P------FP--------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 190 ---~------~d--------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll 246 (274)
. .+ .++.+.++.+.|+|||.+++.+..+. .+.+.+++
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q--------------------~~~v~~~~ 250 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ--------------------GEAVKALF 250 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc--------------------HHHHHHHH
Confidence 0 11 23456677889999999988644321 46788999
Q ss_pred HhCC-CcE-eEEEe
Q 023974 247 GNHC-FQI-DNFVD 258 (274)
Q Consensus 247 ~~aG-F~~-v~~~d 258 (274)
++.| |.. ..+++
T Consensus 251 ~~~~~~~~v~~~~d 264 (280)
T COG2890 251 EDTGFFEIVETLKD 264 (280)
T ss_pred HhcCCceEEEEEec
Confidence 9999 653 34444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-10 Score=118.42 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=76.2
Q ss_pred CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------------------CCceEEEeeccCCCC
Q 023974 117 SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------------------DTVKCWQGELIYVPD 173 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------------------~~v~~~~gDae~LPf 173 (274)
+.+|| +|||||.++..++...+ .+|+|+|+|++|++.|+++. .+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899 99999999999988876 89999999999999998652 247999999876432
Q ss_pred C-CCCccEEEec--ccCcCC----------CC--------------------------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 174 K-WGPLDVVFLY--FLPAMP----------FP--------------------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 174 ~-~~sFD~V~~~--f~l~~~----------~d--------------------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
. ...||+|++| +..... .+ .++++.+..++|||||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 2379999988 443210 00 1567778889999999999864
Q ss_pred C
Q 023974 215 P 215 (274)
Q Consensus 215 ~ 215 (274)
.
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=104.65 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=103.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-------CCCceEEEeeccCC--CCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-------YDTVKCWQGELIYV--PDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-------~~~v~~~~gDae~L--Pf~~~sF 178 (274)
+...+++.|.+|| .|+|-|..+...++++..+|+-|+-.+..|+.|+-+ -..++.+.||+.++ .|.|++|
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 3445677899999 999999999998888867999999999999998854 12579999999885 3889999
Q ss_pred cEEEec---ccCcCCCCHHHHHHHHHHhcCCCCEEEE--EcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 179 DVVFLY---FLPAMPFPLDQVFETLANRCSPGARVVI--SHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 179 D~V~~~---f~l~~~~d~~~al~el~RvLKPGGrlvI--s~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
|+|+-- |.+.---=-++..+|++|+|||||++.= ..|..+ .+ -.+. +.++.+.++++||++
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-----yr-------G~d~--~~gVa~RLr~vGF~~ 272 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-----YR-------GLDL--PKGVAERLRRVGFEV 272 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-----cc-------cCCh--hHHHHHHHHhcCcee
Confidence 999832 2221111125789999999999999954 333211 11 1122 368889999999998
Q ss_pred eEEEecCCe
Q 023974 254 DNFVDESGF 262 (274)
Q Consensus 254 v~~~d~~~~ 262 (274)
+....+...
T Consensus 273 v~~~~~~~g 281 (287)
T COG2521 273 VKKVREALG 281 (287)
T ss_pred eeeehhccc
Confidence 888776643
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=116.72 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCC-CCCCCccEEEec--
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVP-DKWGPLDVVFLY-- 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LP-f~~~sFD~V~~~-- 184 (274)
.+.+|| +|||||.++..++..+..+|++||+|+.|++.|+++. .+++++++|+.+.. ...++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 578999 9999999999998865567999999999999999863 25789999986632 225789999986
Q ss_pred -ccCc--------CCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 -FLPA--------MPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 -f~l~--------~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|... ...+..+.+..+.++|+|||.++++.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2211 01234567888899999999998863
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=102.33 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----------------CCceEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----------------DTVKCWQ 165 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----------------~~v~~~~ 165 (274)
.+.+.++.+...++.||| .|||.|.-+..|+++|. +|+|||+|+.-++.|.++. .++++++
T Consensus 25 ~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 25 ALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 455666667788888999 99999999999999884 9999999999999985432 1358899
Q ss_pred eeccCCCCCC-CCccEEEec-ccCc-CCCCHHHHHHHHHHhcCCCCEE-EEEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023974 166 GELIYVPDKW-GPLDVVFLY-FLPA-MPFPLDQVFETLANRCSPGARV-VISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 166 gDae~LPf~~-~sFD~V~~~-f~l~-~~~d~~~al~el~RvLKPGGrl-vIs~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
||.-+++..+ ++||+|.=. +... ....+++-.+.|.+.|||||++ .|+-...... . .-+- - -.+.+|
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~----~-~GPP---f-~v~~~e 174 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE----M-EGPP---F-SVTEEE 174 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC----S-SSSS--------HHH
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC----C-CCcC---C-CCCHHH
Confidence 9999987655 589999844 2222 3446668888999999999993 3321110000 0 0000 0 124688
Q ss_pred HHHHHHhCCCcEeEEEe
Q 023974 242 LQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d 258 (274)
+.+++. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 888887 6788776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.1e-10 Score=105.37 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=77.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCC-CC-CCCCccE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYV-PD-KWGPLDV 180 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~L-Pf-~~~sFD~ 180 (274)
.....+|| ||||+|.++..+++..+ .+|+.||++++|++.||+.+ ++++++.+|+.+. .. .++.||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35568999 99999999999987644 78999999999999999864 3588999997543 21 2578999
Q ss_pred EEecccCcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
|++-..-.+.+. -.+.++.+.++|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 998643222111 247899999999999999873
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-10 Score=100.55 Aligned_cols=104 Identities=23% Similarity=0.217 Sum_probs=85.6
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEe
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
..++......+..+|| ||+|+|.++..++++.| .+++..|+ |++++.+++ .++++++.||.. =|++. +|+|++
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l 164 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLL 164 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEE
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceee
Confidence 3445666778888999 99999999999999998 89999999 889999999 778999999996 34433 999999
Q ss_pred cccCcCCCCHH--HHHHHHHHhcCCC--CEEEEEc
Q 023974 184 YFLPAMPFPLD--QVFETLANRCSPG--ARVVISH 214 (274)
Q Consensus 184 ~f~l~~~~d~~--~al~el~RvLKPG--GrlvIs~ 214 (274)
...+|+..|.+ ++|+.+++.|+|| |+|+|.+
T Consensus 165 ~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 165 RHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99998876544 7899999999999 9999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.1e-10 Score=102.17 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+..+++.+++.+++.++++|| ||||+|.++..+++++ .+|+|||+++.|++.++++. ++++++++|+.++++.
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP- 90 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch-
Confidence 4556888999999999999999 9999999999999886 58999999999999999874 4689999999998864
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
.||.|+++.-.+
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 489999984443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-10 Score=101.39 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=78.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CC-----CCCC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PD-----KWGP 177 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf-----~~~s 177 (274)
...+..+|| ||||||.-+..+++. .+ ++|+++|.++++++.|++.. ..+++++||+.+. +. .+++
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 334567999 999999988777765 33 89999999999999999763 2478999999774 21 2478
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||+|++...- ......+.++.+.|||||.+++-+..
T Consensus 145 fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 145 FDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999987432 34467899999999999999985443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=99.19 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+..+.+++++.+++.++++|| ||||+|.++..|+++++ .|+|+|+++.|++.++++. ++++++++|+.++|+.
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP- 90 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh-
Confidence 3445888999999999999999 99999999999998875 7999999999999999875 5789999999999875
Q ss_pred CCcc---EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 176 GPLD---VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD---~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+| +|+++--++. ....+..+.. .+|+..++
T Consensus 91 -~~d~~~~vvsNlPy~i---~~~il~~ll~--~~~~~~~~ 124 (253)
T TIGR00755 91 -DFPKQLKVVSNLPYNI---SSPLIFKLLE--KPKFRLAV 124 (253)
T ss_pred -HcCCcceEEEcCChhh---HHHHHHHHhc--cCCCceEE
Confidence 566 7776643322 1233444332 56655444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=101.69 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC----CCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV----PDK 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L----Pf~ 174 (274)
.+.+++.+.+.++++|| +|||+|.++..+++.. .+|+|||+++.|++.|+++ ..+++|+++|++++ ++.
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 34556666777888999 9999999999998765 4899999999999999976 35789999999763 344
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++||+|++. -++.-. ..++++.+.+ ++|+|.++|+.
T Consensus 360 ~~~~D~vi~d-PPr~G~-~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 360 GQIPDVLLLD-PPRKGC-AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCCCCEEEEC-cCCCCC-CHHHHHHHHh-cCCCEEEEEcC
Confidence 6789999975 223211 2466666554 89999888863
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.4e-10 Score=97.69 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=75.8
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC-CC--CCCCCccEEEecccCc
Q 023974 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY-VP--DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~-LP--f~~~sFD~V~~~f~l~ 188 (274)
-+| ||||.|.++..++...| ..++|||++...++.|.++ .+|+.++++|+.. |+ ++++++|.|+++|-=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 677 99999999999999988 9999999999999887765 6789999999988 33 4679999999997422
Q ss_pred CCC--------CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 189 MPF--------PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~--------d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+- =-.+.+.+++++|||||.|.+.+.
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 221 113789999999999999999543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-09 Score=100.88 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCCC----CCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYVP----DKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~LP----f~~~sFD~V~ 182 (274)
.++.+|| +|||||.++..++..+..+|++||.|+.|++.|++.. . ++++++||+.+.. ...++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4578999 9999999877655444469999999999999999752 2 5789999997742 2356899999
Q ss_pred ec--ccCcCCC-------CHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LY--FLPAMPF-------PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~--f~l~~~~-------d~~~al~el~RvLKPGGrlvIs 213 (274)
+. +....-. +..+.++...++|||||.|+.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 88 2211111 2233444568999999999984
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-09 Score=91.15 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=82.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEec--c
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLY--F 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~--f 185 (274)
+.-+|.+|+ +|||||.++...+-.++.+|+|||+.+++++.++++.. +++|+.+|+.+.. ..||.|++| |
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence 444677899 99999999988877888899999999999999998755 7999999998774 669999999 7
Q ss_pred cCcCC-CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 186 LPAMP-FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 186 ~l~~~-~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+.+.- .|. .++....+.. .+|- ++++-.+.+-+++..+.+|+++.
T Consensus 119 G~~~rhaDr-~Fl~~Ale~s----~vVY-------------------siH~a~~~~f~~~~~~~~G~~v~ 164 (198)
T COG2263 119 GSQRRHADR-PFLLKALEIS----DVVY-------------------SIHKAGSRDFVEKFAADLGGTVT 164 (198)
T ss_pred ccccccCCH-HHHHHHHHhh----heEE-------------------EeeccccHHHHHHHHHhcCCeEE
Confidence 76532 232 4444444443 1211 23333455666777777777544
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=95.02 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=77.6
Q ss_pred HHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCCCCCC
Q 023974 106 DQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf~~~s 177 (274)
..+++.+. ..++.+|| +|||||.++..++.++..+|++||.+++.++.|++.. .+++++++|+.+ ++...++
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~ 121 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP 121 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence 33444432 24678999 9999999998655555579999999999999998752 358899999876 3333467
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHH--hcCCCCEEEEEcCC
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLAN--RCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~R--vLKPGGrlvIs~~~ 216 (274)
||+|+++=-++.- -.+++++.+.. .|+|+|.++|.|..
T Consensus 122 fDlV~~DPPy~~g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 122 HNVVFVDPPFRKG-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred ceEEEECCCCCCC-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 9999988221221 13455555544 37999999998653
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-09 Score=91.89 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=92.9
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~s 177 (274)
+++.+..+...|--|| +|.|||.++.++++++. ..+++++.|++......+++|+++++.||+.++- +.+.-
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 4556667888888999 99999999999999863 8999999999999999999999999999999886 56778
Q ss_pred ccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs 213 (274)
||+|+|+.-+.+++- .-+.++++...|.+||.++-.
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 999999976666542 337889999999999999864
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-09 Score=78.02 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=72.4
Q ss_pred EE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC--CC---ceEEEeeccC--CCCCC-CCccEEEecccCc
Q 023974 120 VL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY--DT---VKCWQGELIY--VPDKW-GPLDVVFLYFLPA 188 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~--~~---v~~~~gDae~--LPf~~-~sFD~V~~~f~l~ 188 (274)
+| +|||+|... .+..... ..++|+|+++.|++.++.+. .. +.+..+|... +|+.+ ..||++......+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 89 999999965 3333332 37999999999999976654 22 5788899887 88887 5999993334444
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+. ++...+.++.++|+|||.+++...
T Consensus 131 ~~-~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 131 LL-PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred cC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 44 488999999999999999999643
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=100.45 Aligned_cols=83 Identities=12% Similarity=0.276 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP 172 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP 172 (274)
.+..+++++++.+++.++++|| ||||+|.++..+++.+ .+|+|+|+++.|++.+++++ ++++++++|+.+.+
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3445889999999999999999 9999999999998876 48999999999999999863 46899999998876
Q ss_pred CCCCCccEEEecc
Q 023974 173 DKWGPLDVVFLYF 185 (274)
Q Consensus 173 f~~~sFD~V~~~f 185 (274)
+ ..||+|+++.
T Consensus 99 ~--~~~d~VvaNl 109 (294)
T PTZ00338 99 F--PYFDVCVANV 109 (294)
T ss_pred c--cccCEEEecC
Confidence 5 4789999873
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=99.69 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=75.3
Q ss_pred CeEE-EEcCchH----HHHHHHHhC-----CCcEEEEeCcHHHHHHHHHh-CC---------------------------
Q 023974 118 SKVL-VSISSEE----FVDRVVESS-----PSLLLVVHDSLFVLAGIKEK-YD--------------------------- 159 (274)
Q Consensus 118 ~rVL-vGcGTG~----l~~~L~~~~-----~~~V~gVD~S~~ML~~Ar~k-~~--------------------------- 159 (274)
=||+ .||+||. ++..|.+.. .-+|+|.|+|+.+|++|++- |+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999 9999994 333344432 14799999999999999953 11
Q ss_pred --------CceEEEeeccCCCCC-CCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 160 --------TVKCWQGELIYVPDK-WGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 160 --------~v~~~~gDae~LPf~-~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.|.|.+.|+.+-|+. .+.||+|+|-.++.++ +..+++++.+++.|+|||.|++.|..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 147888888875543 5899999997665554 35679999999999999999998754
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=94.46 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=90.8
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce------EEEeeccCCCCCC
Q 023974 104 RIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK------CWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~------~~~gDae~LPf~~ 175 (274)
++..+++..++ .++.+|| +|||||.++..+++.+..+|+|||++++||+...+..+.+. +...++++++.+-
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 56677777766 4677899 99999999999999866799999999999987444444432 2223344444334
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccc---cCCCHHHHHHHHHhCCC
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVS---DLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~---~fps~~eL~~ll~~aGF 251 (274)
..+|++|++..+ .+..+.+.|+| |.+++. .|+-.-......+ ..++.+ ..--.+++...+.+.||
T Consensus 142 ~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~--~giv~~~~~~~~~~~~~~~~~~~~~~ 210 (228)
T TIGR00478 142 ATFDVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNK--KGVVRDKEAIALALHKVIDKGESPDF 210 (228)
T ss_pred eeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCc--CCeecCHHHHHHHHHHHHHHHHcCCC
Confidence 578888876433 47888889999 887763 3321110000000 011100 01113566667888899
Q ss_pred cEeEEEe
Q 023974 252 QIDNFVD 258 (274)
Q Consensus 252 ~~v~~~d 258 (274)
.+..+.+
T Consensus 211 ~~~~~~~ 217 (228)
T TIGR00478 211 QEKKIIF 217 (228)
T ss_pred eEeeEEE
Confidence 8776654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=89.40 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=106.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHH-----hCCCc-eEEEeeccCCCC--
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKE-----KYDTV-KCWQGELIYVPD-- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~-----k~~~v-~~~~gDae~LPf-- 173 (274)
-+-.+|+..-...+.+|| ||||||.-+.++++..| ....--|..+..+.-.++ ..+++ .-+.-|+.+-+-
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 344455444233333699 99999999999999887 677778888887643332 23443 223455554432
Q ss_pred ------CCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChh---------HHH-HHHhhCccccccc
Q 023974 174 ------KWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGRE---------ALQ-KQRKQFPDVIVSD 235 (274)
Q Consensus 174 ------~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~---------~l~-~~~~~~~~~si~~ 235 (274)
..++||+|++.-.+|-.+ .-+..|+...++|+|||.|++--|..+. .++ .++...+ ...
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp---~~G 169 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP---EWG 169 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC---CcC
Confidence 346999999887776543 4468899999999999999995443211 111 1122221 245
Q ss_pred CCCHHHHHHHHHhCCCcEeEEEecC-CeEEEEEEe
Q 023974 236 LPDQMTLQKAAGNHCFQIDNFVDES-GFYLVVLKF 269 (274)
Q Consensus 236 fps~~eL~~ll~~aGF~~v~~~d~~-~~yl~v~~~ 269 (274)
+.+.+++.++++++|++....++=+ ...++|.||
T Consensus 170 iRD~e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 170 IRDIEDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCHHHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 7889999999999999877766622 224666654
|
The function of this family is unknown. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-09 Score=98.24 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=74.0
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCccEEEec
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sFD~V~~~ 184 (274)
+...++.+|| +|||+|.++..+++.+ .+|+|+|.|+.|++.|+++. .+++|+++|++++.. .++.||+|++.
T Consensus 169 l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 169 VRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred HHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3333568999 9999999999998866 59999999999999998753 468999999988653 34679999987
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
-++.- ....+.++...++|++.++|+.
T Consensus 248 -PPr~G--~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 248 -PPRRG--IGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred -CCCCC--ccHHHHHHHHHcCCCeEEEEEC
Confidence 33331 1223334445578988888864
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-09 Score=104.92 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=95.7
Q ss_pred eEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCCCCCCccEEEec-ccCcCCCCH
Q 023974 119 KVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPDKWGPLDVVFLY-FLPAMPFPL 193 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf~~~sFD~V~~~-f~l~~~~d~ 193 (274)
.+| ||||+|.|+++|.+++- -.+..-|..+..++.|.++ .|.+--+.| ...|||.+++||.|=|+ +...|..+-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~-s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLG-SQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhc-cccccCCccchhhhhcccccccchhcc
Confidence 577 99999999999988763 1111226666788888877 443322222 36899999999999777 667777666
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEecC
Q 023974 194 DQVFETLANRCSPGARVVISHPQGR-EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~~~ 271 (274)
.-.|-|+-|||||||.++.+-+.-. ...+...+. ..+++++.+...|+.+..+++ ++|-+|+.
T Consensus 199 g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~-----------~~~~~~l~~~lCW~~va~~~~----~aIwqKp~ 262 (506)
T PF03141_consen 199 GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEE-----------WNAMEDLAKSLCWKKVAEKGD----TAIWQKPT 262 (506)
T ss_pred cceeehhhhhhccCceEEecCCcccccchHHHHHH-----------HHHHHHHHHHHHHHHheeeCC----EEEEeccC
Confidence 6789999999999999999755321 111111112 356777888888987766555 78888774
|
; GO: 0008168 methyltransferase activity |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=94.15 Aligned_cols=139 Identities=10% Similarity=0.081 Sum_probs=95.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
...++| ||+|-|.++..++... .+|.+-+.|+.|....++|- .+.+ |+.++...+.+||+|.|--.+--+.+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~kg--~~vl--~~~~w~~~~~~fDvIscLNvLDRc~~P~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKKG--FTVL--DIDDWQQTDFKFDVISCLNVLDRCDRPL 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhCC--CeEE--ehhhhhccCCceEEEeehhhhhccCCHH
Confidence 346899 9999999999997655 58999999999988877753 2222 3333444567899999998998889999
Q ss_pred HHHHHHHHhcCCCCEEEEEc--CC------ChhHHHHHHhhCcccccccCC-CHHHHHHHHHhCCCcEeEEEecC
Q 023974 195 QVFETLANRCSPGARVVISH--PQ------GREALQKQRKQFPDVIVSDLP-DQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvIs~--~~------gr~~l~~~~~~~~~~si~~fp-s~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
..|++|.+.|+|+|+++++- |. +.+....-.+.. .+....|= ..+.+.+.++.+||++..|..-+
T Consensus 169 ~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l-~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL-PVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 99999999999999999841 11 000000000000 00000000 12345578999999999987655
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=88.78 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-Cc---------EEEEeCcHHHHHHHHHhCC------CceEEE
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SL---------LLVVHDSLFVLAGIKEKYD------TVKCWQ 165 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~---------V~gVD~S~~ML~~Ar~k~~------~v~~~~ 165 (274)
.....++...+..+++.|| --||||.+....+..+. .. ++|+|++++|++.|+++.. .+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3456777788899999999 99999999766544433 33 8999999999999997632 368899
Q ss_pred eeccCCCCCCCCccEEEec--ccCcCCC--CH----HHHHHHHHHhcCCCCEEEEE
Q 023974 166 GELIYVPDKWGPLDVVFLY--FLPAMPF--PL----DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~--f~l~~~~--d~----~~al~el~RvLKPGGrlvIs 213 (274)
+|+.++|+.++++|+|+++ |+.+... +. .+.++++.|+|+| +.++++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 9999999888999999999 8877642 11 2557889999999 444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=87.76 Aligned_cols=123 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred ccccccCCccch--hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----
Q 023974 88 WSFLDSDELNFK--EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----- 158 (274)
Q Consensus 88 Wd~~~~~~~~~~--~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----- 158 (274)
+.+.+.-.-|+. .+. -.+-+++.+....+.+|| +|||.|.++..+++..| .+++-+|.+..-|+.||+..
T Consensus 129 ~~~~t~pGVFS~~~lD~-GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 129 LTFKTLPGVFSRDKLDK-GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred eEEEeCCCCCcCCCcCh-HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC
Confidence 445555444432 221 235567777777777999 99999999999999998 99999999999999999863
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CH---HHHHHHHHHhcCCCCEEEEE
Q 023974 159 DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PL---DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~---~~al~el~RvLKPGGrlvIs 213 (274)
.+..++..|. ..+-.+ +||.|+||=-+|--. .. ++.+++..+.|++||.|.|-
T Consensus 208 ~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 208 ENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred CccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 2234566665 344444 999999994334311 11 27888999999999999884
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=90.24 Aligned_cols=160 Identities=12% Similarity=0.080 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHhCC---C--CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CC----CceEE
Q 023974 99 KEHIQRIDQIISAGE---I--DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YD----TVKCW 164 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~---~--~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~----~v~~~ 164 (274)
.....|+.+++.... + ..+.+|| ||||+|-+...|+.+.+ .+++|+|+++.+++.|++. .+ .++++
T Consensus 92 ~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~ 171 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLR 171 (321)
T ss_pred HHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence 344467778875431 2 2567999 99999999888877655 7999999999999999975 32 25554
Q ss_pred -EeeccCCC----CCCCCccEEEec--ccCcCCCC---HHHHHHHH----------------HHhcCCCCEEEEEcCCCh
Q 023974 165 -QGELIYVP----DKWGPLDVVFLY--FLPAMPFP---LDQVFETL----------------ANRCSPGARVVISHPQGR 218 (274)
Q Consensus 165 -~gDae~LP----f~~~sFD~V~~~--f~l~~~~d---~~~al~el----------------~RvLKPGGrlvIs~~~gr 218 (274)
+.|..++. ..++.||+|+|| |.-..... -.+-.+.+ .+.+.+||.+.+..+.-.
T Consensus 172 ~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~ 251 (321)
T PRK11727 172 LQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIE 251 (321)
T ss_pred EccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhH
Confidence 44544433 246789999999 44332211 01112222 233457787766433222
Q ss_pred hHHHHHHh-hCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 219 EALQKQRK-QFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 219 ~~l~~~~~-~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
.......+ .|-...+..-.+.+.+.+.+++.|...+...+
T Consensus 252 eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 252 ESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEE
Confidence 22111111 12222345567889999999999996666555
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=94.93 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-----CceEEEe-eccCC
Q 023974 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-----TVKCWQG-ELIYV 171 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~g-Dae~L 171 (274)
..++.-.+.++....+.+|++|| ==||||.++....-.| .+++|.|++..|++-|+.+.. +..+..+ ||.++
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 35556667788888999999999 9999999887775555 699999999999999998743 3445555 99999
Q ss_pred CCCCCCccEEEec--ccCcC---CCC----HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 172 PDKWGPLDVVFLY--FLPAM---PFP----LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 172 Pf~~~sFD~V~~~--f~l~~---~~d----~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+.+++||+|++- ++-.- ... .+++|+.+.++||+||++++.-+
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999999999965 44322 112 46899999999999999999644
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=89.97 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHhCCCC------CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-----ceEEEee
Q 023974 100 EHIQRIDQIISAGEID------ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-----VKCWQGE 167 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~------~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-----v~~~~gD 167 (274)
.+.+.-+..|+.+... ...++| .|+|-|+++..|+-..-.+|--||+.+..+++|++.... .++.+.-
T Consensus 33 ~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~g 112 (218)
T PF05891_consen 33 IDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVG 112 (218)
T ss_dssp HHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecC
Confidence 4444455666665444 357899 999999999977543226999999999999999976543 4566666
Q ss_pred ccCCCCCCCCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEc---CCChhHHHHHHhhCcccccccCCCHHHH
Q 023974 168 LIYVPDKWGPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISH---PQGREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 168 ae~LPf~~~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~---~~gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
+++.-...+.||+|.+-+++.+..|.+ +.|+.+...|+|||.++|-+ ..+...+++ .+-|+ -.+.+.+
T Consensus 113 LQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~-----~DsSv--TRs~~~~ 185 (218)
T PF05891_consen 113 LQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDE-----EDSSV--TRSDEHF 185 (218)
T ss_dssp GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEET-----TTTEE--EEEHHHH
T ss_pred HhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCC-----ccCee--ecCHHHH
Confidence 676644567999999998887776544 88999999999999999932 111100000 11122 2456899
Q ss_pred HHHHHhCCCcEeEEEecCCe
Q 023974 243 QKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d~~~~ 262 (274)
.+++++||++++..+...+|
T Consensus 186 ~~lF~~AGl~~v~~~~Q~~f 205 (218)
T PF05891_consen 186 RELFKQAGLRLVKEEKQKGF 205 (218)
T ss_dssp HHHHHHCT-EEEEEEE-TT-
T ss_pred HHHHHHcCCEEEEeccccCC
Confidence 99999999999988776655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-08 Score=91.71 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=98.0
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH-------h--------------------------CC---
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE-------K--------------------------YD--- 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~-------k--------------------------~~--- 159 (274)
.-+|| -|||.|+++-.++.+|- .+.|.++|--||-..+- . +|
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 46899 99999999999999875 89999999999866441 0 12
Q ss_pred ---------CceEEEeeccCCCCCC---CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 160 ---------TVKCWQGELIYVPDKW---GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 160 ---------~v~~~~gDae~LPf~~---~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
++....||..++...+ ++||+|+.+|.+---.|.-+-++.|.++|||||.-+=.-|..-+ ...
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh-----~~~ 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYH-----FEP 210 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCcccc-----CCC
Confidence 1356679988887665 89999999998887778889999999999999944322121000 001
Q ss_pred C--c-ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 228 F--P-DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 228 ~--~-~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
. . +.++ + .+.+||..++++.||+++..+.
T Consensus 211 ~~~~~~~sv-e-Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 MSIPNEMSV-E-LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCCccc-C-CCHHHHHHHHHHCCCEEEEEEE
Confidence 1 0 1111 2 5689999999999999876554
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=93.93 Aligned_cols=98 Identities=10% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEEe
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVFL 183 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~~ 183 (274)
...+|| ||+|+|.++..+++..+ .+|+.||++++|++.|++.+ ++++++.+|+.+ |...+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 446899 99999999988877544 78999999999999999764 457899999877 4555689999997
Q ss_pred cccCcC---CC---CHHHHHH-HHHHhcCCCCEEEEE
Q 023974 184 YFLPAM---PF---PLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~---~~---d~~~al~-el~RvLKPGGrlvIs 213 (274)
-..-.+ .. =-.+.++ .+.+.|+|||.+++.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632100 00 0246787 889999999999874
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-08 Score=89.11 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCCeEE-EEcCchH----HHHHHHHh--C--C--CcEEEEeCcHHHHHHHHHh-C-------------------------
Q 023974 116 ESSKVL-VSISSEE----FVDRVVES--S--P--SLLLVVHDSLFVLAGIKEK-Y------------------------- 158 (274)
Q Consensus 116 ~~~rVL-vGcGTG~----l~~~L~~~--~--~--~~V~gVD~S~~ML~~Ar~k-~------------------------- 158 (274)
..=||+ +||+||. ++..|.+. . + -+|+|.|+|+.+|++|++- |
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 445899 9999994 33344441 1 1 4899999999999999953 0
Q ss_pred -------CCceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 159 -------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 159 -------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..+.|.+.|+.+.+...+.||+|+|--++-.+. ..+++++.+++.|+|||.|++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 125899999988445679999999986665543 3459999999999999999998654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=90.94 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
+..+.+..+++. ....+|| ||||||..+..++... + ++|+++|.++++++.|++.+ ..++++.||+.+
T Consensus 105 ~~g~lL~~L~~~---~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 105 DQAQLLAMLVQI---LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred HHHHHHHHHHHh---cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 333444444433 3467999 9999999999888753 3 78999999999999999753 258999999866
Q ss_pred -CCC-----CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 171 -VPD-----KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 -LPf-----~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||. .+++||.||+-..- .+....++.+.+.|+|||.+++-+..
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 332 24689999987542 34567888889999999999985443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-08 Score=89.00 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=79.4
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC---CCCCCccEEEecccC
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP---DKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l 187 (274)
-.+| ||||.|.++..++.+.| ..++||++...-+..|.++ .+|+.++++||.++- ++++++|-|+++|-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 4788 99999999999999998 9999999999887777665 348899999998853 355699999999853
Q ss_pred cCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 188 AMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 188 ~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
-|.-. -...+++++|+|||||.|.+.+.
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 23221 13689999999999999999643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-07 Score=88.91 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=74.2
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC-CCCCCccEEEec
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP-DKWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP-f~~~sFD~V~~~ 184 (274)
+...++.+|| ++||||.++..++..+ .+|+|||.++.+++.|+++. .+++|.++|+++.. ...++||+|++.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3334567999 9999999999998765 58999999999999999752 46889999997743 223569999987
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
-++.-.+ .++++.+. .++|++.++|++
T Consensus 308 -PPr~G~~-~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 308 -PPRRGIG-KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred -CCCCCCc-HHHHHHHH-hcCCCeEEEEEe
Confidence 3443212 35555554 489999999975
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-08 Score=87.08 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=78.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCC------CceEEE-eeccCCC--CCCCCccE
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYD------TVKCWQ-GELIYVP--DKWGPLDV 180 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~------~v~~~~-gDae~LP--f~~~sFD~ 180 (274)
......+|| ||+++|.-+.+++..-+ ++++.+|..++|.+.|++... .+..+. ||+.+.- +..++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 344667999 99999999988887654 899999999999999998632 366777 5876643 34799999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
||+=..-. +..+.+..+.+.|||||.+++
T Consensus 136 iFIDadK~---~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 136 VFIDADKA---DYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEeCChh---hCHHHHHHHHHHhCCCcEEEE
Confidence 99886543 346889999999999999998
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.8e-08 Score=87.05 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHhCC--CCCCCeEE-EEcCchHHHHHHHHh-C-C-CcEEEEeCcHHHHHHHHHhC---------------CCceEEE
Q 023974 107 QIISAGE--IDESSKVL-VSISSEEFVDRVVES-S-P-SLLLVVHDSLFVLAGIKEKY---------------DTVKCWQ 165 (274)
Q Consensus 107 ~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~-~-~-~~V~gVD~S~~ML~~Ar~k~---------------~~v~~~~ 165 (274)
.+++.+. +.||.+.| ||.|||.++...++. + + ..++|||.=++.++.++++. +++.++.
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4444554 78999999 999999999887754 3 3 34599999999999998763 2468899
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||....--+.++||+|.+.++- .+..+++...|||||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 9999988889999999998543 34456666679999999994
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=82.74 Aligned_cols=131 Identities=12% Similarity=0.029 Sum_probs=101.3
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC---CCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD---KWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf---~~~sFD~V~~~f~l~~~~d~ 193 (274)
-++| |||=+...... ..+--.|++||+.+. . -.+.+.|..+.|. +++.||+|+++.++..++++
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~--------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ--------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC--------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 4899 99875443222 112246999999862 2 3447888888775 57899999999999999877
Q ss_pred H---HHHHHHHHhcCCCCE-----EEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEE
Q 023974 194 D---QVFETLANRCSPGAR-----VVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLV 265 (274)
Q Consensus 194 ~---~al~el~RvLKPGGr-----lvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~ 265 (274)
. +.++.+++.|||+|. |.|..|.. .+...++.+.+.+..+|+..||..+.++..+.....
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~ 188 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP------------CVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYW 188 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch------------HhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEE
Confidence 6 789999999999999 77754532 123356788899999999999999999999999888
Q ss_pred EEEecCC
Q 023974 266 VLKFSKS 272 (274)
Q Consensus 266 v~~~~~~ 272 (274)
+.++...
T Consensus 189 l~r~~~~ 195 (219)
T PF11968_consen 189 LFRKSGK 195 (219)
T ss_pred EEeecCC
Confidence 8888754
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-07 Score=82.13 Aligned_cols=167 Identities=19% Similarity=0.105 Sum_probs=100.4
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHH----HHHHHH
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFV----LAGIKE 156 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~M----L~~Ar~ 156 (274)
..|.|+..-+-+.- .+-..++.+.+.+|++|| +|..+|...-.+..- ++ +.|.||++|+.+ ++.| +
T Consensus 47 eYR~W~P~RSKLaA------ai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~ 119 (229)
T PF01269_consen 47 EYRVWNPFRSKLAA------AILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-K 119 (229)
T ss_dssp EEEEE-TTT-HHHH------HHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-H
T ss_pred ceeecCchhhHHHH------HHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-c
Confidence 77889974442111 122234556789999999 999999998888774 55 899999999954 4444 4
Q ss_pred hCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh-hCcccc
Q 023974 157 KYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRK-QFPDVI 232 (274)
Q Consensus 157 k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~-~~~~~s 232 (274)
+.+|+--+.+||..-. .--+.+|+|++--. ....-+-+...+..-||+||.++|. ...+. +.. .-++.
T Consensus 120 ~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~-iKa~s----iD~t~~p~~- 191 (229)
T PF01269_consen 120 KRPNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS-IKARS----IDSTADPEE- 191 (229)
T ss_dssp HSTTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE-EEHHH----H-SSSSHHH-
T ss_pred cCCceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE-EecCc----ccCcCCHHH-
Confidence 5678888899986411 12358999997643 2234456677777899999999985 11110 100 00000
Q ss_pred cccCCCHHHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023974 233 VSDLPDQMTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 233 i~~fps~~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
--.+-.+.+++.||+..+..+ +.+++++|++..
T Consensus 192 -----vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y~ 228 (229)
T PF01269_consen 192 -----VFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRYR 228 (229)
T ss_dssp -----HHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE-
T ss_pred -----HHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEec
Confidence 012334567888999888776 566788888754
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=83.51 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeec
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGEL 168 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDa 168 (274)
+.+.-+.+..+++..+ ..+|| ||||+|.-+..+++.-| ++|+.+|.++++.+.|++.+ ..++++.||+
T Consensus 30 ~~~~g~lL~~l~~~~~---~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTR---PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHHT----SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHhcC---CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 3344456666665543 35899 99999999999987643 89999999999999999743 2589999999
Q ss_pred cC-CC---C--CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 169 IY-VP---D--KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 169 e~-LP---f--~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+ |+ - ..++||.||+-..- .+....+..+.+.|+|||.+++-+...
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred HhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEccccc
Confidence 76 23 1 13689999988644 345678888889999999999965443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-06 Score=81.65 Aligned_cols=133 Identities=11% Similarity=0.069 Sum_probs=85.4
Q ss_pred cccccccccccccccCCccchhHHH------HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-CCcEEEEeC
Q 023974 79 NFEDFTEIDWSFLDSDELNFKEHIQ------RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-PSLLLVVHD 146 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~------w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-~~~V~gVD~ 146 (274)
-+|+.-.+-|+..+........+.+ ....+.+. +.++..++ +|||+|.=+..|++. + +.++++||+
T Consensus 35 ~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI 112 (319)
T TIGR03439 35 LYDDEGLKLFEEITYSPEYYLTNDEIEILKKHSSDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDV 112 (319)
T ss_pred hhcchHHHHHHHHHcCCccCChHHHHHHHHHHHHHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3444455556655554333222211 12234433 45777899 999999876655442 2 267999999
Q ss_pred cHHHHHHHHHh-----CCCceE--EEeeccC----CCC--CCCCccEEE-ecccCcCCCCHH--HHHHHHHH-hcCCCCE
Q 023974 147 SLFVLAGIKEK-----YDTVKC--WQGELIY----VPD--KWGPLDVVF-LYFLPAMPFPLD--QVFETLAN-RCSPGAR 209 (274)
Q Consensus 147 S~~ML~~Ar~k-----~~~v~~--~~gDae~----LPf--~~~sFD~V~-~~f~l~~~~d~~--~al~el~R-vLKPGGr 209 (274)
|.++|+.+.++ +|.+++ ++||.++ +|- ......+|+ ....+.|+...+ ..|+++++ .|+|||.
T Consensus 113 S~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~ 192 (319)
T TIGR03439 113 SRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDS 192 (319)
T ss_pred CHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCE
Confidence 99999998875 455655 7888765 332 223456664 446788975433 56678899 9999999
Q ss_pred EEEE
Q 023974 210 VVIS 213 (274)
Q Consensus 210 lvIs 213 (274)
|+|+
T Consensus 193 lLiG 196 (319)
T TIGR03439 193 FLIG 196 (319)
T ss_pred EEEe
Confidence 9995
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=87.24 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+...++++++.+++.++++|| ||+|+|.+|..|++++. +|+||++.+.|++..+++. ++++.++||+...++..
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 3445688999999999999999 99999999999999885 8999999999999999884 57999999999998865
Q ss_pred C-CccEEEec
Q 023974 176 G-PLDVVFLY 184 (274)
Q Consensus 176 ~-sFD~V~~~ 184 (274)
- .++.|++|
T Consensus 93 l~~~~~vVaN 102 (259)
T COG0030 93 LAQPYKVVAN 102 (259)
T ss_pred hcCCCEEEEc
Confidence 4 78999987
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=91.44 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=79.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC-CCCCCccEEE-
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP-DKWGPLDVVF- 182 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP-f~~~sFD~V~- 182 (274)
.+.+|++|| +|||+|-=+..++... . +.|+++|+++..++..+++ ..++.....|+..++ ...+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 678999999 9999998888887763 3 7999999999999988865 346777889988764 3356899998
Q ss_pred ---ec-c-cCcCCCCH----------------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 183 ---LY-F-LPAMPFPL----------------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ---~~-f-~l~~~~d~----------------~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ - .++--++. .+.|...++.|||||+||-++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 44 1 23321111 5678888999999999988754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.7e-08 Score=92.28 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=107.1
Q ss_pred CCCcccccccc-ccccccccccccCCcc--ch-hHHHHHHH---HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEE
Q 023974 71 DEGTVSVVNFE-DFTEIDWSFLDSDELN--FK-EHIQRIDQ---IISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLL 142 (274)
Q Consensus 71 ~~~~~~~~~f~-~~~~~~Wd~~~~~~~~--~~-~~~~w~~~---ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~ 142 (274)
+|....|.+-. |++.+.|....+.... +. ....|++. .+-.....+++.++ +|||-|-...++..-....++
T Consensus 58 ~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~ 137 (364)
T KOG1269|consen 58 PEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVV 137 (364)
T ss_pred chHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCcc
Confidence 44444444444 7788889866554221 21 22225431 12224667888999 999999998888665447999
Q ss_pred EEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 143 VVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 143 gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|.++.-+.++..+. ....++.+|+.+.||+++.||.|-+.-...+.+++..+++|++||+||||.+++-
T Consensus 138 Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 138 GLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999888877542 2245688999999999999999988888888899999999999999999999984
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=82.68 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CC-C-CCC-CccEEEec
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VP-D-KWG-PLDVVFLY 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LP-f-~~~-sFD~V~~~ 184 (274)
++.+|| ++||||.++..++.++..+|++||.++.+++.+++.. .+++++++|+.+ +. . ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 578999 9999999999999887678999999999999988752 247899999955 32 1 123 47888865
Q ss_pred --ccCcCCCCHHHHHHHHH--HhcCCCCEEEEEcCC
Q 023974 185 --FLPAMPFPLDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 185 --f~l~~~~d~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
|.-. ..++++..+. ..|++||.+++.|..
T Consensus 129 PPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG---ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4432 2345555554 469999999987653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=92.95 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEeccc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLYFL 186 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~f~ 186 (274)
.+..+| ||||.|.++..++...| ..++|||.+..-+++|.++ ..|+.++.+|++.+. ++++++|.|+++|-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 345678 99999999999999988 8999999999987776655 457888888886543 67899999999985
Q ss_pred CcCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 187 PAMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 187 l~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
=-|+-. -.+.+++++++|||||.+.+.+.
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 333221 13688999999999999999643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-06 Score=79.05 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=101.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHh-----CCCc-eEEEeeccC---CCCCCCCccEEE
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAGIKEK-----YDTV-KCWQGELIY---VPDKWGPLDVVF 182 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k-----~~~v-~~~~gDae~---LPf~~~sFD~V~ 182 (274)
..-+|| |+||.|......++..+ ..|+-.|+|+.-++++++- +.++ +|.++||-+ +...+-..|+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 445899 99999987665555433 6899999999999988753 4555 999999866 222234568888
Q ss_pred ecccCcCCCC---HHHHHHHHHHhcCCCCEEEEEc-CCChhHHHHHHhhCc-----ccccccCCCHHHHHHHHHhCCCcE
Q 023974 183 LYFLPAMPFP---LDQVFETLANRCSPGARVVISH-PQGREALQKQRKQFP-----DVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 183 ~~f~l~~~~d---~~~al~el~RvLKPGGrlvIs~-~~gr~~l~~~~~~~~-----~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++-.+-.++| ..+.++-+++.+.|||.++-+- |.-+. ++.+.+... ..=+..--|+.|+.++.+++||+-
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-hHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 7755666666 3467889999999999999862 22111 111111110 012456679999999999999955
Q ss_pred eEEEecCCeEEEEE
Q 023974 254 DNFVDESGFYLVVL 267 (274)
Q Consensus 254 v~~~d~~~~yl~v~ 267 (274)
+.-.-++...+.|-
T Consensus 294 ~~q~ID~~GIFTVS 307 (311)
T PF12147_consen 294 IDQRIDEWGIFTVS 307 (311)
T ss_pred hhheeccCCceEEE
Confidence 54444444445553
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-08 Score=92.42 Aligned_cols=95 Identities=15% Similarity=0.195 Sum_probs=79.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
....++-+| +|||-|..+. ..| ..++|.|.+.+.+..|+++.+. ....+|+.++|+.+.+||.+++..++||.
T Consensus 42 ~~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhl 116 (293)
T KOG1331|consen 42 SQPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHL 116 (293)
T ss_pred ccCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhh
Confidence 345578888 9999997432 224 7899999999999999988775 55789999999999999999988888886
Q ss_pred C---CHHHHHHHHHHhcCCCCEEEE
Q 023974 191 F---PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~---d~~~al~el~RvLKPGGrlvI 212 (274)
. ...++++|+.|+|||||...|
T Consensus 117 sT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 117 STRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEE
Confidence 5 345899999999999999877
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=80.22 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=87.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCC--------------------------------
Q 023974 115 DESSKVL-VSISSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDT-------------------------------- 160 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~-------------------------------- 160 (274)
-++..+| |||-.|.++..+++.. +..|+|||+.+..++.|++..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 4556899 9999999999998874 48899999999999999975321
Q ss_pred --------c-----eEEEeeccCCCCCCCCccEEEec---ccCc--C-CCCHHHHHHHHHHhcCCCCEEEEEcCCC-hhH
Q 023974 161 --------V-----KCWQGELIYVPDKWGPLDVVFLY---FLPA--M-PFPLDQVFETLANRCSPGARVVISHPQG-REA 220 (274)
Q Consensus 161 --------v-----~~~~gDae~LPf~~~sFD~V~~~---f~l~--~-~~d~~~al~el~RvLKPGGrlvIs~~~g-r~~ 220 (274)
+ .+++-..+=|.+....||+|.|. -|+| | -+-+.+.|+.+.+.|.|||+||+. |+. ..+
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpWksY 215 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPWKSY 215 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCchHHH
Confidence 0 11111111133456789999977 3333 2 234668999999999999999985 432 222
Q ss_pred HHHHH---hhCcccccccCCCHHHHHHHHHhC--CCc
Q 023974 221 LQKQR---KQFPDVIVSDLPDQMTLQKAAGNH--CFQ 252 (274)
Q Consensus 221 l~~~~---~~~~~~si~~fps~~eL~~ll~~a--GF~ 252 (274)
.+.-+ ..+.. --.-+..++....++.+. ||+
T Consensus 216 ~kaar~~e~~~~n-y~~i~lkp~~f~~~l~q~~vgle 251 (288)
T KOG2899|consen 216 KKAARRSEKLAAN-YFKIFLKPEDFEDWLNQIVVGLE 251 (288)
T ss_pred HHHHHHHHHhhcC-ccceecCHHHHHhhhhhhhhhee
Confidence 11111 11111 012245567777777766 454
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.7e-07 Score=81.98 Aligned_cols=110 Identities=7% Similarity=0.027 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeecc
Q 023974 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELI 169 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae 169 (274)
.+.-+.+..+++.. ...+|| |||++|.-+.++++.. + ++|+.+|.++++.+.|++.+ ..+++++||+.
T Consensus 65 ~~~g~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 65 ADEGQFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 34444556666544 346899 9999999988887753 4 89999999999999998753 35899999997
Q ss_pred C-CCC------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 170 Y-VPD------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 170 ~-LPf------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+ ||. ..++||.||+-..-. ....-++.+.+.|+|||.+++-.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcC
Confidence 7 342 136999999885533 33566777788999999998843
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=73.24 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=79.4
Q ss_pred CCCCCCCeEE-EEcCchH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC-CCCccEEEecccCc
Q 023974 112 GEIDESSKVL-VSISSEE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK-WGPLDVVFLYFLPA 188 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~-~~sFD~V~~~f~l~ 188 (274)
+....+.+|| ||||+|. ++..|.+.+ ..|+|+|.++..++.|+++ .+.++++|+-+-.+. -+.+|+|. .+|
T Consensus 12 ~~~~~~~kileIG~GfG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~~a~liy---sir 85 (134)
T PRK04148 12 YEKGKNKKIVELGIGFYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYKNAKLIY---SIR 85 (134)
T ss_pred cccccCCEEEEEEecCCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHhcCCEEE---EeC
Confidence 3444567999 9999995 888888777 4999999999999989876 468899998776554 36788887 457
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
-..+....+.++++.+ |.-++|.+..+.
T Consensus 86 pp~el~~~~~~la~~~--~~~~~i~~l~~e 113 (134)
T PRK04148 86 PPRDLQPFILELAKKI--NVPLIIKPLSGE 113 (134)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence 7788899999999988 889999865443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=76.03 Aligned_cols=173 Identities=18% Similarity=0.134 Sum_probs=114.8
Q ss_pred cccccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHH
Q 023974 75 VSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLA 152 (274)
Q Consensus 75 ~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~ 152 (274)
+-.+.+++-..|.|+..-+-+.- .+-..++.+.+++|++|| +|.-+|+..-....-.+ +.|.||.+|+.|..
T Consensus 41 E~ii~~~~~eYR~Wnp~RSKLaA------aIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r 114 (231)
T COG1889 41 ERIIKVEGEEYREWNPRRSKLAA------AILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR 114 (231)
T ss_pred ceeEEecCcceeeeCcchhHHHH------HHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH
Confidence 34566778788899985443211 223345567789999999 99999998888877644 89999999999775
Q ss_pred HHH---HhCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh-----HH
Q 023974 153 GIK---EKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE-----AL 221 (274)
Q Consensus 153 ~Ar---~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~-----~l 221 (274)
..- ++.+|+--+.+||..-- .-=+.+|+|+.--.=. ..-+-+..++..-||+||.++|. ...|. ..
T Consensus 115 eLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp--~Qa~I~~~Na~~FLk~~G~~~i~-iKArSIdvT~dp 191 (231)
T COG1889 115 ELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP--NQAEILADNAEFFLKKGGYVVIA-IKARSIDVTADP 191 (231)
T ss_pred HHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCCc--hHHHHHHHHHHHhcccCCeEEEE-EEeecccccCCH
Confidence 532 44678888899985421 2236699998653221 23345667888999999988774 11111 00
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023974 222 QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
++.. .+|+ +.+++.||++....+ +.++++.|.+..
T Consensus 192 ~~vf-------------~~ev-~kL~~~~f~i~e~~~LePye~DH~~i~~~~~ 230 (231)
T COG1889 192 EEVF-------------KDEV-EKLEEGGFEILEVVDLEPYEKDHALIVAKYK 230 (231)
T ss_pred HHHH-------------HHHH-HHHHhcCceeeEEeccCCcccceEEEEEeec
Confidence 1110 1234 456777899888877 567788887653
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=89.30 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=73.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCCCCCccEEEec--
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDKWGPLDVVFLY-- 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~~~sFD~V~~~-- 184 (274)
+=.+..|| ||||||.+....++.|..+|.|||.|. |.+.|++- +.+ +++++|.+|++-++-+.+|+|++-
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 44678999 999999999988888888999999997 44777754 233 789999999865557999999976
Q ss_pred -ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 -FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 -f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+++-.-.-++.++-.=-+.|+|||.++=
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2222222344555555689999998753
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=80.81 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCeEE-EEcCchH----HHHHHHHhC------CCcEEEEeCcHHHHHHHHHh-CC-------------------------
Q 023974 117 SSKVL-VSISSEE----FVDRVVESS------PSLLLVVHDSLFVLAGIKEK-YD------------------------- 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~----l~~~L~~~~------~~~V~gVD~S~~ML~~Ar~k-~~------------------------- 159 (274)
.=||. +||+||. ++..|.+.. .-+|+|.|+|..+|++|++- |+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 35899 9999993 444444433 16899999999999999842 21
Q ss_pred --------CceEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 160 --------TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 160 --------~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.|.|.+.|+.+-+...+.||+|+|--++-.+. ..+++++.++..|+|||.|+|.|..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 14677777766554568899999975555443 4459999999999999999998754
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.4e-07 Score=86.35 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=74.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
+.+|| ++||+|.++..++...+ ..|+++|.++..++.+++.. .++.+.++|+..+....+.||+|++.= +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899 99999999999877644 68999999999999998753 356789999987543256799999871 2
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+...+....+.++|||.++|+
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 23467777777889999999997
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-07 Score=82.27 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCC-CCCCC-CccEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYV-PDKWG-PLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~L-Pf~~~-sFD~V 181 (274)
+...+|| ||-|.|..+..+.+..+ .+|++||+++.+++.|++-+ ++++++.+|+... -...+ .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3567999 99999999999987654 79999999999999999743 4678999998663 23334 89999
Q ss_pred Eeccc-CcCCCC---HHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFL-PAMPFP---LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~-l~~~~d---~~~al~el~RvLKPGGrlvIs 213 (274)
++-.. +..... -.+.++.+.+.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 97522 221111 258999999999999999984
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=80.03 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=77.2
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccCC-CCCCCCccEEEecc
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIYV-PDKWGPLDVVFLYF 185 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~L-Pf~~~sFD~V~~~f 185 (274)
.+|| ||-|.|.+++.+++..+ .+++.||+.+++++.+|+-+| .++.+.+|+-+. ....++||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 5999 99999999999988776 899999999999999998643 467888998774 33445899999763
Q ss_pred cCc----CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPA----MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~----~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.-. -.---.+.++.+.|.|+++|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 322 1111268999999999999999985
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=79.99 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhCCCCC---CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEE----
Q 023974 100 EHIQRIDQIISAGEIDE---SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCW---- 164 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~---~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~---- 164 (274)
+-.+|++.+++.++-.+ +..+| +|||+|.++..++..-+ ++|+|||.|+.-+..|.++.. .+..+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 55568888888775443 34599 99999999998877645 899999999999999987632 23333
Q ss_pred EeeccC-CCCCCCCccEEEec--ccCcCC-C---------CH--------------HHHHHHHHHhcCCCCEEEEE
Q 023974 165 QGELIY-VPDKWGPLDVVFLY--FLPAMP-F---------PL--------------DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 165 ~gDae~-LPf~~~sFD~V~~~--f~l~~~-~---------d~--------------~~al~el~RvLKPGGrlvIs 213 (274)
++|+.. .|..++..|++++| |...-- . ++ ...+.-..|.|+|||.+.+.
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 555533 45678999999998 433211 0 11 12334457999999999885
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-06 Score=79.62 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC-CC-C---
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV-PD-K--- 174 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L-Pf-~--- 174 (274)
..+.+.+... +.+|| ++||+|.++..|++.. .+|+|||.|+.|++.|+++ ..+++|+.+|+++. +. .
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~ 274 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVR 274 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcc
Confidence 3444444332 35799 9999999999888765 4899999999999999975 34688999999873 21 0
Q ss_pred -----------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 175 -----------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 -----------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
...||+|+.- -++.- --+++++.+. +|++.++|+.
T Consensus 275 ~~~~~~~~~~~~~~~D~v~lD-PPR~G-~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 275 EFNRLKGIDLKSYNFSTIFVD-PPRAG-LDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred cccccccccccCCCCCEEEEC-CCCCC-CcHHHHHHHH---ccCCEEEEEe
Confidence 2258999874 33421 1245555554 4788888874
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-06 Score=79.19 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=106.1
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccC-CCCCCCCccEEEecccCcCCCCHH
Q 023974 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIY-VPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~-LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
...+ ||.|+|+++..+....| +|-++++...-+-.++..+ ++++.+-||.-+ +|.. |+|++-..+|++.|.+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~mkWiLhdwtDed 253 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWMKWILHDWTDED 253 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhcCCcceecccccccCCCc----CeEEEEeecccCChHH
Confidence 5667 99999999999988776 7999999999998888888 889888888643 6654 4999999988877655
Q ss_pred --HHHHHHHHhcCCCCEEEEEcCCChh--HHH-----------HHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 195 --QVFETLANRCSPGARVVISHPQGRE--ALQ-----------KQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 195 --~al~el~RvLKPGGrlvIs~~~gr~--~l~-----------~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+.|+.++.-|+|||.++|-+..-.. ... .+.... .+...=.+.+|.+.++.++||.+..+...
T Consensus 254 cvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~--~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 254 CVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQ--TSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHH--hccceeccHHHHHhcchhhcCceeEEEec
Confidence 8999999999999999995431110 000 000000 01122356899999999999999999887
Q ss_pred CCeEEEE
Q 023974 260 SGFYLVV 266 (274)
Q Consensus 260 ~~~yl~v 266 (274)
...|=++
T Consensus 332 ~~~~~~I 338 (342)
T KOG3178|consen 332 AYSYSVI 338 (342)
T ss_pred cCccchh
Confidence 7765443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.3e-06 Score=73.48 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=88.9
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCC----CCCCC-eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHH-
Q 023974 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGE----IDESS-KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAG- 153 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~----~~~~~-rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~- 153 (274)
+...+ |.......+.......|.+.+++.+. +.... +++ ||+|.|--+..|+=..| .+++-||....-++-
T Consensus 10 ~lL~~-~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL 88 (184)
T PF02527_consen 10 ELLLE-WNKKINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFL 88 (184)
T ss_dssp HHHHH-HHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHH
T ss_pred HHHHH-hCceeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHH
Confidence 33344 77666665555455667777766542 33333 899 99999977776665566 789999999985543
Q ss_pred --HHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 154 --IKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 154 --Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.++ .+|++++.+.+|+ +...++||+|++- -+.+....++-+.+.|||||+++..
T Consensus 89 ~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR----Av~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 89 KEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR----AVAPLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp HHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE----SSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee----hhcCHHHHHHHHHHhcCCCCEEEEE
Confidence 4443 5689999999999 6678999999985 4457789999999999999999985
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=76.10 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=69.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccC-C--C-CCCCCc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIY-V--P-DKWGPL 178 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~-L--P-f~~~sF 178 (274)
....+.+|| +|||||-.+..++.. +..+|+.-|..+ -++..+... +++.+..-|+.+ + . ...++|
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 345678999 999999888888777 347999999999 777666541 346666666544 1 1 234689
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|+|+++-.+.+....+..++-+.+.|+|+|.+++++..
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 99999977777777888999999999999998887654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=82.47 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=77.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC--CC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD--KW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf--~~ 175 (274)
-++.+++.+.+.++..+| ++||+|..+..+++..+ ++|+|+|.+++|++.|+++. .+++++++|..++.. .+
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~ 86 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAE 86 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHc
Confidence 367888889889999999 99999999999998853 89999999999999999886 368999999987642 11
Q ss_pred --CCccEEEecccCc--CCCCHHHHHH
Q 023974 176 --GPLDVVFLYFLPA--MPFPLDQVFE 198 (274)
Q Consensus 176 --~sFD~V~~~f~l~--~~~d~~~al~ 198 (274)
.++|+|++.++.- .+.++++.|.
T Consensus 87 ~~~~vDgIl~DLGvSs~Qld~~~RGFS 113 (296)
T PRK00050 87 GLGKVDGILLDLGVSSPQLDDAERGFS 113 (296)
T ss_pred CCCccCEEEECCCccccccCCCcCCcc
Confidence 2899999886643 3557777776
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=80.90 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC----
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK---- 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~---- 174 (274)
...+++.+...+ .+|| ++||||.++..|++.. .+|+|||.+++|++.|+++. .+++|+++|++++-..
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhc
Confidence 445555544333 4799 9999999999888766 49999999999999999763 3688999999873211
Q ss_pred ------------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 175 ------------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ------------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
...||+|+.- -++.-. ..++++.+ ++|++.++|+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lD-PPR~G~-~~~~l~~l---~~~~~ivYvsC 311 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVD-PPRAGL-DPDTCKLV---QAYERILYISC 311 (353)
T ss_pred cccccccccccccCCCCEEEEC-CCCCCC-cHHHHHHH---HcCCcEEEEEc
Confidence 1237998864 334321 23555554 44889999974
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.6e-06 Score=80.53 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=68.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC------ceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT------VKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~------v~~~~gDae~LPf~~~ 176 (274)
.+..+++...+++++.|| ||.|||.++..|++.+. +|+|+++.+.|++...++..+ ++.++||....++ -
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P 122 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--P 122 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--c
Confidence 567888899999999999 99999999999999884 999999999999999998643 6788999977643 4
Q ss_pred CccEEEec
Q 023974 177 PLDVVFLY 184 (274)
Q Consensus 177 sFD~V~~~ 184 (274)
-||.++++
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 59999975
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=75.31 Aligned_cols=104 Identities=20% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC--
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD-- 173 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf-- 173 (274)
+..++.++++.||++|| -|+|+|.+.-++++. +| +++.-.|+-+.--++|++.+ .++++..-|+...-|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 45778889999999999 999999999999886 67 99999999888888888753 357887777776544
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCC-EEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA-RVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG-rlvIs 213 (274)
++..+|+||.- ++.|-.|+-.++.+||.+| +|+..
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEec
Confidence 46889999863 3467789999999999988 66654
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.4e-06 Score=79.40 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=77.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-------CceEEEeeccCCC----CCCCCccEEEec
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-------TVKCWQGELIYVP----DKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-------~v~~~~gDae~LP----f~~~sFD~V~~~ 184 (274)
|.||| +-|=||.++...+..|..+||.||.|..-|+.|++++. .++|+++|+-+.- -....||+|++-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 89999 99999999988877776799999999999999998742 3689999996632 344699999965
Q ss_pred ---cc------CcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 185 ---FL------PAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 185 ---f~------l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ ++-..|....+....++|+|||.++++..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 11122445667778899999999999644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-06 Score=80.09 Aligned_cols=148 Identities=9% Similarity=0.081 Sum_probs=91.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---C-----------------------------
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---D----------------------------- 159 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---~----------------------------- 159 (274)
-..|.++| ||||+ .+-..|....- .+|+..|+++.=++..++=. .
T Consensus 54 ~~~g~~llDiGsGP-tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGP-TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT---GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCc-HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 34577999 99999 34344433222 68999999998776554310 0
Q ss_pred -Cc-eEEEeeccCCC-CCC-----CCccEEEecccCc----CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 160 -TV-KCWQGELIYVP-DKW-----GPLDVVFLYFLPA----MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 160 -~v-~~~~gDae~LP-f~~-----~sFD~V~~~f~l~----~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
.+ +.+..|+.+.+ +.. ..||+|++.|.+- ..+....|++.+.+.|||||.|++....+.. .
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-------~ 205 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-------Y 205 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-------E
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-------e
Confidence 02 46678988754 322 2499999887653 2334558999999999999999996332211 1
Q ss_pred Ccc---cccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEe
Q 023974 228 FPD---VIVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKF 269 (274)
Q Consensus 228 ~~~---~si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~ 269 (274)
|.. .-..--.+.+.+++.++++||.+..++. .++++++|.||
T Consensus 206 Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 206 YMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred EEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 110 0011124689999999999999888763 34567777776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.6e-07 Score=78.41 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=69.1
Q ss_pred HHHHHHHhCC-CCCC--CeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC------C
Q 023974 104 RIDQIISAGE-IDES--SKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY------V 171 (274)
Q Consensus 104 w~~~ll~~~~-~~~~--~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~------L 171 (274)
++.++.+..+ +.++ .+|| +||++|-++..++++. + .+|+|||+.+. ...+++.+++||..+ +
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHSHHG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHHHhh
Confidence 5667777777 5554 8999 9999999999999987 4 89999999986 333566666666543 1
Q ss_pred C----CCCCCccEEEecccCcCCC----CH-------HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 172 P----DKWGPLDVVFLYFLPAMPF----PL-------DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 172 P----f~~~sFD~V~~~f~l~~~~----d~-------~~al~el~RvLKPGGrlvIs~~~ 216 (274)
. ...+.||+|++=.++.... |. ..++.-+.+.|||||.+++-...
T Consensus 82 ~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 82 RKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 1236999999876332221 11 23444445779999999985433
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.8e-06 Score=79.52 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccC-
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIY- 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~- 170 (274)
+++..++.+-+. ..+.+|| +-|=||.++.+.+..|..+|+.||.|...|+.|++.+ ..++|+++|+-+
T Consensus 110 DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 110 DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 444444444333 3578999 9999999998876655568999999999999999862 357899999865
Q ss_pred CC--CCCCCccEEEec---ccCcCC---CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 171 VP--DKWGPLDVVFLY---FLPAMP---FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 171 LP--f~~~sFD~V~~~---f~l~~~---~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. -..+.||+|++- |.-.-. .+..+.+..+.++|+|||.|+++
T Consensus 187 l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 187 LKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp HHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 135799999975 432221 14446677788999999999874
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=84.40 Aligned_cols=112 Identities=11% Similarity=0.042 Sum_probs=79.8
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHh-------------------------------------------CC
Q 023974 104 RIDQIISAGEI-DESSKVL-VSISSEEFVDRVVES-------------------------------------------SP 138 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~-------------------------------------------~~ 138 (274)
....++...+. .++..++ -.||+|.+....+.. .+
T Consensus 177 lAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 177 LAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 34456666676 5677888 999999997554321 01
Q ss_pred CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC--CCCccEEEec--ccCcCCC--CHHHH---HHHHHHh
Q 023974 139 SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK--WGPLDVVFLY--FLPAMPF--PLDQV---FETLANR 203 (274)
Q Consensus 139 ~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~--~~sFD~V~~~--f~l~~~~--d~~~a---l~el~Rv 203 (274)
.+++|+|++++|++.|+++. . .+.+.++|+.+++.. .++||+|++| |+-+... +.++. +.+..+.
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 26999999999999999863 2 378999999998754 3589999999 7777643 23334 3444555
Q ss_pred cCCCCEEEEEcC
Q 023974 204 CSPGARVVISHP 215 (274)
Q Consensus 204 LKPGGrlvIs~~ 215 (274)
..||+++++..+
T Consensus 337 ~~~g~~~~llt~ 348 (702)
T PRK11783 337 QFGGWNAALFSS 348 (702)
T ss_pred hCCCCeEEEEeC
Confidence 559999988544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-06 Score=76.94 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=76.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh--------CCCcEEEEeCcHHHHHHHHHhC-------CCceEEEee
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES--------SPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGE 167 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~--------~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gD 167 (274)
..+-+++.+...++.+|| -+||||.|+..+.+. ....++|+|+++.+++.|+-+. .+..+.++|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 455666677888888999 999999998777652 2378999999999999888541 224578888
Q ss_pred ccCCCCC--CCCccEEEec--ccCc-CCC-----------------CHH-HHHHHHHHhcCCCCEEEEEcC
Q 023974 168 LIYVPDK--WGPLDVVFLY--FLPA-MPF-----------------PLD-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 168 ae~LPf~--~~sFD~V~~~--f~l~-~~~-----------------d~~-~al~el~RvLKPGGrlvIs~~ 215 (274)
.-.-+.. ...||+|+++ |+.. +.. +.+ ..+..+.+.||+||++++.-|
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 7665543 4799999998 6544 100 111 466788999999999877434
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.7e-06 Score=81.33 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=63.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhC-----CCcEEEEeCcHHHHHHHHHh-----C-CCceEEEeeccCCCCCCCCccEEEec
Q 023974 117 SSKVL-VSISSEEFVDRVVESS-----PSLLLVVHDSLFVLAGIKEK-----Y-DTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~-----~~~V~gVD~S~~ML~~Ar~k-----~-~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
+..|| ||||||-+....++.+ ..+|+||+-++......+++ . ..|+++++|++++..+ +.+|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 45688 9999999987665543 27999999998765444322 2 4699999999998753 599999966
Q ss_pred -cc--CcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 185 -FL--PAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 185 -f~--l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
.+ .-|- --.++|....|.|||||.++
T Consensus 266 lLGsfg~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccc-cCHHHHHHHHhhcCCCCEEe
Confidence 11 2222 23367888899999998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.6e-06 Score=75.13 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=74.7
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--------------CCC
Q 023974 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--------------YDT 160 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--------------~~~ 160 (274)
.|.....-..++++.+++.+++..+ ||||.|......+-..+ .+.+||++.+.--+.|++. ...
T Consensus 23 YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~ 102 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGK 102 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---E
T ss_pred eeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3555666788899999999999999 99999998776654434 5799999998866665531 224
Q ss_pred ceEEEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 161 VKCWQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 161 v~~~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++.+||..+-++. ...-|+|+++-.. +.++....+.+++.-||||-++|-+.
T Consensus 103 v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 103 VELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp EEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred ceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 67788887654421 2457999998332 33466788999999999998876543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=70.45 Aligned_cols=127 Identities=14% Similarity=0.218 Sum_probs=86.5
Q ss_pred EE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCCCCccEEEec-ccCcC
Q 023974 120 VL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKWGPLDVVFLY-FLPAM 189 (274)
Q Consensus 120 VL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~ 189 (274)
|. |||-=|.+..+|.+++. .+++++|++++-|+.|++.. ..++++.||.-+ ++ ..+..|.|+++ .+=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHHH
Confidence 56 89999999999999987 78999999999999999763 248999999754 43 23347888766 44322
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE--EEecCCeEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN--FVDESGFYLVVL 267 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~--~~d~~~~yl~v~ 267 (274)
..+.+.+....++...+|++. |... ...|++++.+.||.++. ...+++.|+-|+
T Consensus 80 ---I~~ILe~~~~~~~~~~~lILq-P~~~--------------------~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi 135 (205)
T PF04816_consen 80 ---IIEILEAGPEKLSSAKRLILQ-PNTH--------------------AYELRRWLYENGFEIIDEDLVEENGRFYEII 135 (205)
T ss_dssp ---HHHHHHHTGGGGTT--EEEEE-ESS---------------------HHHHHHHHHHTTEEEEEEEEEEETTEEEEEE
T ss_pred ---HHHHHHhhHHHhccCCeEEEe-CCCC--------------------hHHHHHHHHHCCCEEEEeEEEeECCEEEEEE
Confidence 357788777888877788876 4421 46899999999997665 344555555555
Q ss_pred EecC
Q 023974 268 KFSK 271 (274)
Q Consensus 268 ~~~~ 271 (274)
..++
T Consensus 136 ~~~~ 139 (205)
T PF04816_consen 136 VAER 139 (205)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=72.46 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=67.4
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEec--ccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLY--FLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~--f~l~ 188 (274)
+|..++ +|||+|.+.....-.++..|+|+|+.++-|+.++++.. ++.++|+|+.++-+..+.||.++++ |+-.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGTk 127 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGTK 127 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCcc
Confidence 567888 99999999855544445799999999999999998754 4689999999999899999999999 7755
Q ss_pred CC-CCHHHHHHHHHHhc
Q 023974 189 MP-FPLDQVFETLANRC 204 (274)
Q Consensus 189 ~~-~d~~~al~el~RvL 204 (274)
+- .|- +++.....+.
T Consensus 128 ~~~aDm-~fv~~al~~~ 143 (185)
T KOG3420|consen 128 KKGADM-EFVSAALKVA 143 (185)
T ss_pred cccccH-HHHHHHHHHH
Confidence 42 232 3444443444
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=73.96 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=68.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccCCCC-CCCCccEEEe
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIYVPD-KWGPLDVVFL 183 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~LPf-~~~sFD~V~~ 183 (274)
+...+|| ||-|-|..++.+++.. .+|+-||+.+++++.+|+-+| +++++. . +.. ..++||+|++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhccCCcCCEEEE
Confidence 4457999 9999999999988764 499999999999999998543 345543 1 222 2378999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
-.. ...+..+.+.|.|+|||.++.
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 643 235778999999999999998
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.1e-05 Score=65.52 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEEEec--ccC
Q 023974 117 SSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVVFLY--FLP 187 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V~~~--f~l 187 (274)
.+-+| ||||+|..+..|+.. ++ ....+.|+++.-++.-++. --.+..+++|...-- ..++.|+++.+ |++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 56799 999999999999876 45 8899999999988885542 334677888876533 34999999988 655
Q ss_pred cC
Q 023974 188 AM 189 (274)
Q Consensus 188 ~~ 189 (274)
.-
T Consensus 123 t~ 124 (209)
T KOG3191|consen 123 TS 124 (209)
T ss_pred CC
Confidence 43
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.3e-06 Score=74.65 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+....+++++.+++.++..|| ||+|+|.++..|++.+ .+|++|+.++.+.+..++++ ++++++.+|+.++...+
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 4556788999999999999999 9999999999999988 69999999999999999975 47999999999987654
Q ss_pred ---CCccEEEecccCcCCCCHHHHHHHHHHhcCC
Q 023974 176 ---GPLDVVFLYFLPAMPFPLDQVFETLANRCSP 206 (274)
Q Consensus 176 ---~sFD~V~~~f~l~~~~d~~~al~el~RvLKP 206 (274)
+.-..|+++- +.+. -...+..+...-+.
T Consensus 93 ~~~~~~~~vv~Nl-Py~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNL-PYNI--SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEE-TGTG--HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEe-cccc--hHHHHHHHhhcccc
Confidence 4556677663 3233 23566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.8e-05 Score=67.61 Aligned_cols=173 Identities=13% Similarity=0.053 Sum_probs=119.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCC----CC-CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI----DE-SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLF 149 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~----~~-~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ 149 (274)
...|-+...+ |.......+.......|.+.+++.+.+ .. +.+++ ||+|.|-=+.-|+=..| .+|+-||....
T Consensus 24 l~~Y~~lL~~-wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 24 LEAYVELLLK-WNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred HHHHHHHHHH-hhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 4556666666 998888777766777798888777643 22 57999 99999976666654445 67999999876
Q ss_pred ---HHHHHHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023974 150 ---VLAGIKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 150 ---ML~~Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
.|+.+++. .+|++++++.+|++.-...-||+|++- -+.+....+.-....+|+||.++..... +.
T Consensus 103 k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~~k~~------~~ 172 (215)
T COG0357 103 KIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLAYKGL------AG 172 (215)
T ss_pred HHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEee----hccchHHHHHHHHHhcccCCcchhhhHH------hh
Confidence 56666665 468999999999997422229999985 3446677788888899999998763211 11
Q ss_pred HhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEecC
Q 023974 225 RKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKFSK 271 (274)
Q Consensus 225 ~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~~~ 271 (274)
... ..+.++.+...||++..+.. +....+.|+++.+
T Consensus 173 ~~e-----------~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 173 KDE-----------LPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred hhh-----------HHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEeccC
Confidence 111 24566677777886665443 2235677777765
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-05 Score=71.98 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=64.5
Q ss_pred CeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHh-------CCCceEEEeeccCCCCCCCCccEEEeccc
Q 023974 118 SKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEK-------YDTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k-------~~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
++|+ ||||.=-++..+..+ ++ ..|+++|.+++-++.|++- ...++|+.+|+.+++.+-..||+|+.+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 5999 999998777765542 44 6799999999999999763 23579999999998876789999998865
Q ss_pred CcC-CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAM-PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~-~~d~~~al~el~RvLKPGGrlvIs 213 (274)
... -.+.++++..+.+.++||.++++-
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 542 337889999999999999999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=71.25 Aligned_cols=140 Identities=14% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCc----------HHHHHHHHHh-CCCceEEEeeccCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDS----------LFVLAGIKEK-YDTVKCWQGELIYVP 172 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S----------~~ML~~Ar~k-~~~v~~~~gDae~LP 172 (274)
++|...++++|++|+ +-.|.|.++..+... ++ +.|++.-.. +.|=..+++. +.|++.+-++.-.++
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC
Confidence 566778999999999 999999999998775 56 788877433 3344455544 446666666666666
Q ss_pred CCCCCccEEEec---ccCc--C--CCCHHHHHHHHHHhcCCCCEEEEEc-CC--ChhHHHHHHhhCcccccccCCCHHHH
Q 023974 173 DKWGPLDVVFLY---FLPA--M--PFPLDQVFETLANRCSPGARVVISH-PQ--GREALQKQRKQFPDVIVSDLPDQMTL 242 (274)
Q Consensus 173 f~~~sFD~V~~~---f~l~--~--~~d~~~al~el~RvLKPGGrlvIs~-~~--gr~~l~~~~~~~~~~si~~fps~~eL 242 (274)
.....|++.-+ ..+| + ....+++.++++++|||||.++|.+ -. |.+. .+.......+....
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~--------~dt~~~~ri~~a~V 189 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL--------SDTITLHRIDPAVV 189 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh--------hhhhhhcccChHHH
Confidence 55666776542 1122 2 3466799999999999999998852 21 1221 11123445667888
Q ss_pred HHHHHhCCCcEeE
Q 023974 243 QKAAGNHCFQIDN 255 (274)
Q Consensus 243 ~~ll~~aGF~~v~ 255 (274)
.+..+++||+...
T Consensus 190 ~a~veaaGFkl~a 202 (238)
T COG4798 190 IAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHhhcceeee
Confidence 8999999997653
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-06 Score=74.47 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=72.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccC-CC---CCCCCccEEEe
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIY-VP---DKWGPLDVVFL 183 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~-LP---f~~~sFD~V~~ 183 (274)
-+|.+|| +-||||.++...+.+|..+|+.||.++.-++..+++.. .++.+.+|+.. ++ -....||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 3788999 99999999998888887899999999999999987632 36778888543 32 24789999997
Q ss_pred cccCcCCCC-HHHHHHHHH--HhcCCCCEEEEEcCC
Q 023974 184 YFLPAMPFP-LDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 184 ~f~l~~~~d-~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
- -+-.... ..+++..+. ..|+++|.+++-|..
T Consensus 121 D-PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 D-PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp ---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred C-CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 6 1111122 367888887 799999999997643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00022 Score=68.49 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=75.6
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC---CCCc
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK---WGPL 178 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~---~~sF 178 (274)
.++..+|++|| +|++.|-=+..++.... ..|+|+|.|+.=++..+++. .++.....|+..++.. .+.|
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence 46889999999 99999977777766542 35699999999888877653 3567788888766532 2369
Q ss_pred cEEE----ec-c-cCcCCC------C----------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 179 DVVF----LY-F-LPAMPF------P----------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 179 D~V~----~~-f-~l~~~~------d----------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|.|. |+ . ++|--+ . ..+.|....+.|||||+|+-++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9998 33 2 232111 1 23677788999999999999753
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=67.06 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=61.7
Q ss_pred CeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCC---ceE--EEeec--cCCCCCCCCccEEEecccC
Q 023974 118 SKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDT---VKC--WQGEL--IYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~---v~~--~~gDa--e~LPf~~~sFD~V~~~f~l 187 (274)
.+|| +|||+|.-+-++.+.- . .++++||.|+.|++.++.-..+ ... +..+. +..++. ..|+|++++++
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~~L 112 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASYVL 112 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEehhh
Confidence 5899 9999998665555432 2 7899999999999998864322 110 11111 112332 23999999887
Q ss_pred cCCCC--HHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 188 AMPFP--LDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 188 ~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
.-..+ ..++++.+.+.+.+ .|||-++..+
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 76554 34556666565644 8888655443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=70.16 Aligned_cols=129 Identities=11% Similarity=0.040 Sum_probs=90.0
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC------C-----------------
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP------S----------------- 139 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~------~----------------- 139 (274)
-.|.|-..++..+. ..-....++...+..++..++ -=||+|++....+-.++ .
T Consensus 162 hkRGyR~~~g~ApL---ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 162 HKRGYRVYDGPAPL---KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhccccccCCCCCc---hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 34555554443222 222344667778888888888 99999998765544331 0
Q ss_pred -----------------cEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec--ccCcCCCC--
Q 023974 140 -----------------LLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY--FLPAMPFP-- 192 (274)
Q Consensus 140 -----------------~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~~d-- 192 (274)
.++|+|+++.||+.|+.+. ..++|.++|+..|+..-+.+|+|+|| |+.|....
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence 3779999999999999763 24799999999998655899999999 89887644
Q ss_pred HH----HHHHHHHHhcCCCCEEEEEcC
Q 023974 193 LD----QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 193 ~~----~al~el~RvLKPGGrlvIs~~ 215 (274)
.+ +..+.+.|.++-.++.+++..
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 11 122355577777778888644
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.2e-05 Score=73.37 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC--
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW-- 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~-- 175 (274)
-...+++.++..++++|| +=||.|.++..|+++. .+|+||++++++++.|++. ..|+.|..+|++++....
T Consensus 281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 445667777888889999 9999999999998665 5999999999999999975 346899999999987665
Q ss_pred -CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH
Q 023974 176 -GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQK 223 (274)
Q Consensus 176 -~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~ 223 (274)
..+|.|+.- -+|--.+ +++++.+. .++|-..++|| .+..++.+
T Consensus 360 ~~~~d~VvvD-PPR~G~~-~~~lk~l~-~~~p~~IvYVS--CNP~TlaR 403 (432)
T COG2265 360 GYKPDVVVVD-PPRAGAD-REVLKQLA-KLKPKRIVYVS--CNPATLAR 403 (432)
T ss_pred cCCCCEEEEC-CCCCCCC-HHHHHHHH-hcCCCcEEEEe--CCHHHHHH
Confidence 588999975 4444323 24444443 37888999997 33444443
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=69.28 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=66.7
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~~s 177 (274)
.++.+. +.+++.|| +-||-|.++..+++.+. ..|+|+|+.|.-++.+++. .. .+...++|+.+++. .+.
T Consensus 93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~ 169 (200)
T PF02475_consen 93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGK 169 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-
T ss_pred HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccc
Confidence 345433 67899999 99999999999887444 6899999999977776653 33 36889999999876 899
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
||-|+++. +. .-.+.+.++.+.+|+||.+.
T Consensus 170 ~drvim~l-p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 170 FDRVIMNL-PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEEE---TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred cCEEEECC-hH---HHHHHHHHHHHHhcCCcEEE
Confidence 99999974 22 22457777888899999764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=64.35 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=81.0
Q ss_pred HHHHHHhCCC--CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CC-
Q 023974 105 IDQIISAGEI--DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PD- 173 (274)
Q Consensus 105 ~~~ll~~~~~--~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf- 173 (274)
+..+...+.. -+|.++| +-+|||.++...+.++...++.||.+..-..+.++.. .+.+++..|+... +-
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 3344555543 4788999 9999999999888888789999999999999999863 3467888898843 11
Q ss_pred -CCCCccEEEec--ccCcCCCCHHHHHHH--HHHhcCCCCEEEEEcC
Q 023974 174 -KWGPLDVVFLY--FLPAMPFPLDQVFET--LANRCSPGARVVISHP 215 (274)
Q Consensus 174 -~~~sFD~V~~~--f~l~~~~d~~~al~e--l~RvLKPGGrlvIs~~ 215 (274)
..++||+|+.= |.-.. .+...++.. -..+|+|||.+++-+.
T Consensus 110 ~~~~~FDlVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCcccEEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22359999976 44222 244555555 4678999999999654
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.5e-05 Score=74.53 Aligned_cols=110 Identities=11% Similarity=0.153 Sum_probs=83.2
Q ss_pred HHHHHHHHhC-----CCCCCC-eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCC
Q 023974 103 QRIDQIISAG-----EIDESS-KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYV 171 (274)
Q Consensus 103 ~w~~~ll~~~-----~~~~~~-rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~L 171 (274)
.|.-+.+... .+.+-. ++| +|||-=.+...+.+.+-..|+-+|.|+--++.+..++ +...+.+.|+..+
T Consensus 29 ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l 108 (482)
T KOG2352|consen 29 EWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL 108 (482)
T ss_pred HHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc
Confidence 4655554432 235556 899 9999999988887766579999999999998888765 4578899999999
Q ss_pred CCCCCCccEEEecccCc----------CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 172 PDKWGPLDVVFLYFLPA----------MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~----------~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.|++++||+|+-=-.+. |..-...-+.|++|+|+|||+++.
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 99999999998432221 112233567899999999999765
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7e-05 Score=71.81 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEec---c
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLY---F 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~---f 185 (274)
.+..|| ||||+|.+....+..|..+|.||+-| +|-+.|++-.. .+..+.|-+|++.+ .+..|++++- +
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEeccchh
Confidence 345678 99999999988888777899999987 59999987542 36788899999765 4789999966 3
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+-|- .--+-.-...|.|||.|++.=+
T Consensus 255 mL~NE-RMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 255 MLVNE-RMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhH-HHHHHHHHHHhhcCCCCcccCc
Confidence 33332 1113333456999999998653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=70.53 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=70.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+.+|.+|| |||+||-.+..|++++. +|+|||..+ |+..-...++|+.+++|.....-..+.+|.|+|= ....
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD----mve~ 281 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD----MVEK 281 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe----cccC
Confidence 46889999 99999999999999884 999999554 4443455678999999987654336899999985 3458
Q ss_pred HHHHHHHHHHhcCCC
Q 023974 193 LDQVFETLANRCSPG 207 (274)
Q Consensus 193 ~~~al~el~RvLKPG 207 (274)
|.++.+-|.+.|..|
T Consensus 282 P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 PARVAELMAQWLVNG 296 (357)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999999887
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.1e-05 Score=71.39 Aligned_cols=168 Identities=15% Similarity=0.120 Sum_probs=105.1
Q ss_pred cccccccccccCCccchhHHHHHHHHHHhCC---C-----CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHH
Q 023974 83 FTEIDWSFLDSDELNFKEHIQRIDQIISAGE---I-----DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAG 153 (274)
Q Consensus 83 ~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~---~-----~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~ 153 (274)
.+.|+|+.-... +..+.-+.+++.+. + +..-+|| =|||+|.++-.|+..|. .+-|-++|--||=.
T Consensus 114 ~i~RdwssE~~~-----ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 114 QICRDWSSEGQR-----ERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC 187 (369)
T ss_pred HHHHHhhhccch-----hhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH
Confidence 578889874332 22223334444331 1 2245899 99999999999999887 77788999999855
Q ss_pred HH-------Hh-----C---------------------CC------------ceEEEeeccCCC---CCCCCccEEEecc
Q 023974 154 IK-------EK-----Y---------------------DT------------VKCWQGELIYVP---DKWGPLDVVFLYF 185 (274)
Q Consensus 154 Ar-------~k-----~---------------------~~------------v~~~~gDae~LP---f~~~sFD~V~~~f 185 (274)
.. .+ | |+ ...+.||..+.- -..++||+|+.+|
T Consensus 188 S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf 267 (369)
T KOG2798|consen 188 SSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF 267 (369)
T ss_pred HHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE
Confidence 32 11 1 11 122557776542 2235899999888
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.+---.+.-+-+..+..+|||||.-+=.-|.--+. +..+..-...++. ++-+++..+++..||++...+.-
T Consensus 268 FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF-~d~~g~~~~~siE--ls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 268 FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHF-EDTHGVENEMSIE--LSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EeechHHHHHHHHHHHHhccCCcEEEeccceeeec-cCCCCCccccccc--ccHHHHHHHHHhcCcEEEEeeee
Confidence 87666666788899999999999886532210000 0000000011222 56799999999999998876643
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.9e-05 Score=72.75 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD 173 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf 173 (274)
........+++.++..++ +|| +-||+|.++..|++.. .+|+|||.+++|++.|++. ..+++|+.++++++..
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 444566777888887766 899 9999999999998766 5999999999999999965 4578999998876532
Q ss_pred ----------------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 ----------------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ----------------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
....+|+|+.- -+|--.+ +.+++.+. ++.=.++|+
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilD-PPR~G~~-~~~~~~~~---~~~~ivYvS 309 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILD-PPRAGLD-EKVIELIK---KLKRIVYVS 309 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE----TT-SC-HHHHHHHH---HSSEEEEEE
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEc-CCCCCch-HHHHHHHh---cCCeEEEEE
Confidence 12368888754 3333323 23444432 344455665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.1e-05 Score=72.83 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=76.8
Q ss_pred HHHHHHhCCC---CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 105 IDQIISAGEI---DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 105 ~~~ll~~~~~---~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
-++++..-+. .+..++| +|+|.|+++...+... .+|.|-++|..|..+.++|--++- +.. +.-..+-.||+
T Consensus 98 F~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~ynVl---~~~-ew~~t~~k~dl 172 (288)
T KOG3987|consen 98 FRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYNVL---TEI-EWLQTDVKLDL 172 (288)
T ss_pred HHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCcee---eeh-hhhhcCceeeh
Confidence 3445444333 2346899 9999999998885433 589999999999999988744431 111 11223456999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCC-CCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSP-GARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKP-GGrlvIs 213 (274)
|.|--.+.-+.+|-+.++.++-||+| .||++++
T Consensus 173 i~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 173 ILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 99887777778999999999999999 9999884
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00018 Score=69.67 Aligned_cols=92 Identities=7% Similarity=-0.037 Sum_probs=74.6
Q ss_pred CeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC-CCCCccEEEecccCc
Q 023974 118 SKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD-KWGPLDVVFLYFLPA 188 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf-~~~sFD~V~~~f~l~ 188 (274)
-+|| +-||||.++.+++.+. ...|+++|.+++-++.++++. .++++.++|+..+-. ....||+|++-= +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 4899 9999999999988773 378999999999999998753 357889999987642 236799998752 2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+...+..+.+.+++||.|+|+
T Consensus 124 --Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 --GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --CCcHHHHHHHHHhcccCCEEEEE
Confidence 24567888999999999999996
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=72.98 Aligned_cols=71 Identities=7% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC---------CcEEEEeCcHHHHHHHHHhC---C--CceEEEeeccCC-----CCCC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP---------SLLLVVHDSLFVLAGIKEKY---D--TVKCWQGELIYV-----PDKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~---------~~V~gVD~S~~ML~~Ar~k~---~--~v~~~~gDae~L-----Pf~~ 175 (274)
.+.+|| .|||||.++..+++..+ ..++|+|+++..++.|+... . ++....+|...- ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345899 99999999887765421 47899999999999998763 2 234444443221 1123
Q ss_pred CCccEEEec--cc
Q 023974 176 GPLDVVFLY--FL 186 (274)
Q Consensus 176 ~sFD~V~~~--f~ 186 (274)
+.||+|+.| |+
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 589999999 55
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=67.28 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=73.3
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeecc-----CC-CC-CCCCcc
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELI-----YV-PD-KWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-----~L-Pf-~~~sFD 179 (274)
+...+.++++|| +|||+ |.++..+++... .+|+++|.++++++.+++... ..++...-+ .+ .+ ....+|
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 456778899999 99998 888888887654 469999999999999988643 333321111 11 11 234699
Q ss_pred EEEecccC---------------cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLP---------------AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l---------------~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ....|...++.++.+.|+|||++++.
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 99875432 12245577899999999999999985
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00064 Score=60.95 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-------
Q 023974 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------- 172 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------- 172 (274)
++.++.+.-. +.++.+|+ +|+-.|--+..++++. + +.|+|||+-+- +-.+++.++|+|+.+-+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------KPIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------ccCCCceEEeeeccCccHHHHHHH
Confidence 4445554443 46789999 9999999999888874 3 66999999873 33567999999997644
Q ss_pred -CCCCCccEEEecccC-----cCCCC-----H-HHHHHHHHHhcCCCCEEEEEcCCChh
Q 023974 173 -DKWGPLDVVFLYFLP-----AMPFP-----L-DQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 173 -f~~~sFD~V~~~f~l-----~~~~d-----~-~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
+....+|+|++=..+ +..+. + ..|+.-..++|+|||.+++-..+|..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 334568999966444 22211 1 23444456799999999997776653
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00053 Score=62.47 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
+.-+-+..+++..+ .+++| ||.=||.-+..++..-| ++|+++|+.++-.+.+.+.+ ..+++++|++.+
T Consensus 60 d~g~fl~~li~~~~---ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 60 DKGQFLQMLIRLLN---AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHHhC---CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 33345666666553 46899 99999987777766644 89999999999999987653 247899998855
Q ss_pred -CC-----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 171 -VP-----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 171 -LP-----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+ .+.++||.||.-..=.+. ..-+.++.+.+|+||.|++-.
T Consensus 137 sLd~l~~~~~~~tfDfaFvDadK~nY---~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDADKDNY---SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccchHHH---HHHHHHHHhhcccccEEEEec
Confidence 22 246899999987544333 367888899999999999943
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00046 Score=62.70 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHh---CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCC-C-
Q 023974 103 QRIDQIISA---GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYV-P- 172 (274)
Q Consensus 103 ~w~~~ll~~---~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~L-P- 172 (274)
.|-+.++.+ .-...|.||| ||-|-|...-.+-++.|.+=+.++.-++.+++.|+-- .+|..+.|-+|+. |
T Consensus 85 ~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 85 RWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhhhHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 355444332 2346788999 9999998777776666666677899999999998753 3677778877773 2
Q ss_pred CCCCCccEEEec-ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKWGPLDVVFLY-FLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~-f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..|+.||.|..- |+.. -+|.....+.+.|.|||||.+-.....
T Consensus 165 L~d~~FDGI~yDTy~e~-yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL-YEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred ccccCcceeEeechhhH-HHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 467889999854 4444 368889999999999999999775443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=60.30 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=107.5
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-EeeccCCCC--CCCCc
Q 023974 104 RIDQIISAGEID-ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELIYVPD--KWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae~LPf--~~~sF 178 (274)
++..+++..++. +|..+| ||.-||-|+..+++++..+|+|||...+.|.---+.-|.+... .-++.++-. -.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 567778887775 456778 9999999999999998789999999998887766666665443 345554431 12378
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCCChhHHHHHHhhCcccccc---cCCCHHHHHHHHHhCCCcEe
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS-HPQGREALQKQRKQFPDVIVS---DLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~gr~~l~~~~~~~~~~si~---~fps~~eL~~ll~~aGF~~v 254 (274)
|.++|-..+. .+..+|..+..+++|||-++.. .|+-...-+... ...+..+ .-.-.+++.+.+++.||++.
T Consensus 146 d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~--kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 146 DLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG--KKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred CeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC--cCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 8999875542 5689999999999999998873 332111101111 0111111 11235678889999999887
Q ss_pred EEEecC-----C--eEEEEEEec
Q 023974 255 NFVDES-----G--FYLVVLKFS 270 (274)
Q Consensus 255 ~~~d~~-----~--~yl~v~~~~ 270 (274)
....-+ + -|++-++++
T Consensus 221 gl~~Spi~G~~GNiE~l~~~~k~ 243 (245)
T COG1189 221 GLIKSPIKGGKGNIEFLLLLKKS 243 (245)
T ss_pred eeEccCccCCCCcEeeeeeeecc
Confidence 665422 1 366666554
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=62.57 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhCCCC-CCCeEE-EEcCch--HHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC---CC--ceEEEeec
Q 023974 100 EHIQRIDQIISAGEID-ESSKVL-VSISSE--EFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY---DT--VKCWQGEL 168 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~-~~~rVL-vGcGTG--~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~---~~--v~~~~gDa 168 (274)
+.+.++++.++.+.-. .=...| ||||-= ..+-.++++ .| ++|+=||..+--++.++... ++ ..+++||+
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~ 130 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--T
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCC
Confidence 3344556666654333 235689 999952 223334443 56 89999999999999888753 44 78999998
Q ss_pred cCCC------------CCCCCccEEEecccCcCCC---CHHHHHHHHHHhcCCCCEEEEEcCCChh---HHHHHHhhCcc
Q 023974 169 IYVP------------DKWGPLDVVFLYFLPAMPF---PLDQVFETLANRCSPGARVVISHPQGRE---ALQKQRKQFPD 230 (274)
Q Consensus 169 e~LP------------f~~~sFD~V~~~f~l~~~~---d~~~al~el~RvLKPGGrlvIs~~~gr~---~l~~~~~~~~~ 230 (274)
.+.. ..+.++ +|.+...+|++. ++.++++.+...|-||..|+|+|..... ...+....|..
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~ 209 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQ 209 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHH
T ss_pred CCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHc
Confidence 6622 112333 445555777764 6889999999999999999999864322 22233333322
Q ss_pred -cccccCCCHHHHHHHHHhCCCcEeE
Q 023974 231 -VIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 231 -~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
.....+-+.+|+.+++. ||+.+.
T Consensus 210 ~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 210 AGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp CCS----B-HHHHHHCCT--TSEE-T
T ss_pred CCCCceecCHHHHHHHcC--CCccCC
Confidence 23345778999999887 887653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00056 Score=65.57 Aligned_cols=99 Identities=9% Similarity=-0.012 Sum_probs=68.8
Q ss_pred HHHHhCCCCCCCeEE-EEcC-chHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEe
Q 023974 107 QIISAGEIDESSKVL-VSIS-SEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcG-TG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+.++..++.||++|+ +|+| -|.++..+++. + .+|+++|.|++=++.|++--.+.-..-.|...+..-.+.||+|+.
T Consensus 157 ~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 157 RALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred eehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 345557899999999 7777 35777777774 5 799999999999999987644332221233233322234999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
... ...+....+.||+||++++.
T Consensus 236 tv~-------~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 236 TVG-------PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CCC-------hhhHHHHHHHHhcCCEEEEE
Confidence 644 24556666679999999983
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.001 Score=62.16 Aligned_cols=98 Identities=13% Similarity=0.025 Sum_probs=65.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEE---EeeccCCCCCCCCccEEE
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCW---QGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~---~gDae~LPf~~~sFD~V~ 182 (274)
+......++++|| .|||+ |.++..+++... .+|+++|.+++-++.|++ +..-..+ ..+..++....+.+|+|+
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 4445566789999 88765 556666666533 479999999999999876 3321222 122333332234699998
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-..+- ...+....+.|+|||++++.
T Consensus 241 d~~G~------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 241 EVSGH------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 76542 24677888899999999984
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=62.91 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEE--e-ec-cCC-CCCC-CCccEEEec
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQ--G-EL-IYV-PDKW-GPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~--g-Da-e~L-Pf~~-~sFD~V~~~ 184 (274)
..++.+|+ +|||+ |-++..+++.. ..+|+++|.+++-|+.|++....-.+.. . +. +.+ -... ..+|+|+=+
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 34445999 99999 77777777764 4899999999999999999654321111 1 11 111 1112 369999977
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+ -..++..+.+.+||||++++.
T Consensus 246 ~G------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 246 VG------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CC------CHHHHHHHHHHhcCCCEEEEE
Confidence 66 135889999999999999983
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00015 Score=62.83 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=48.0
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CC---CceEEEeeccCCC--CCCCC-ccEEEec
Q 023974 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YD---TVKCWQGELIYVP--DKWGP-LDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~---~v~~~~gDae~LP--f~~~s-FD~V~~~ 184 (274)
.|+ +.||.|-.+..+++... +|+|||+++..++.|+.. |. ++.|++||+.++. +.... ||+||++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 578 99999999999998874 999999999999999976 43 6899999998864 22222 8999976
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00094 Score=64.81 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccCC-CCCCCCcc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIYV-PDKWGPLD 179 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~L-Pf~~~sFD 179 (274)
+...+|| +|-|-|--.+.|.+... .+|+-||+.|+|++.+++. -|.++.+..|+.+. --..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4557899 99999988888876532 8999999999999999843 14578888888774 34457999
Q ss_pred EEEeccc-CcCCCC----HHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFL-PAMPFP----LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~-l~~~~d----~~~al~el~RvLKPGGrlvIs 213 (274)
+|+.-+- ++++.- -.+...-+.|.|+++|++|+.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 9997642 333211 125666778999999999994
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=53.26 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHH-----hCCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccCCCCCCCCc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVE-----SSPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~-----~~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~LPf~~~sF 178 (274)
...+..+|+ +|||.|.++..|+. ....+|+|||.++.+++.|.++. .++.+++++..+.+. ....
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 100 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP 100 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence 346677999 99999999999988 42379999999999998888652 235666776654432 4556
Q ss_pred cEEEecccCcCCCCHH-HHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLD-QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~-~al~el~RvLKPGGrlvIs 213 (274)
|+++ ++|-+.|+- .+++-+.+ |+-++++.
T Consensus 101 ~~~v---gLHaCG~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 101 DILV---GLHACGDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred eEEE---EeecccchHHHHHHHHHH---cCCCEEEE
Confidence 6666 678887776 44444434 77666553
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0031 Score=57.22 Aligned_cols=130 Identities=12% Similarity=0.166 Sum_probs=92.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCCCCCccEEEec-c
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDKWGPLDVVFLY-F 185 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~~~sFD~V~~~-f 185 (274)
..+.++. |||--+.+..+|.+.++ ..++++|++++-++.|++.++ .++..+||.-..-..+..+|+|+++ .
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3456788 99999999999999888 899999999999999998754 3677788883332345589999876 3
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE--EecCCeE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF--VDESGFY 263 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~--~d~~~~y 263 (274)
+=. -..+.+++-...|+.==++++. |... ..+|++++.+.+|++..- ..+++++
T Consensus 95 GG~---lI~~ILee~~~~l~~~~rlILQ-Pn~~--------------------~~~LR~~L~~~~~~I~~E~ileE~~ki 150 (226)
T COG2384 95 GGT---LIREILEEGKEKLKGVERLILQ-PNIH--------------------TYELREWLSANSYEIKAETILEEDGKI 150 (226)
T ss_pred cHH---HHHHHHHHhhhhhcCcceEEEC-CCCC--------------------HHHHHHHHHhCCceeeeeeeecccCeE
Confidence 322 2357788777777544467664 4322 368999999999977653 3344444
Q ss_pred EEEEE
Q 023974 264 LVVLK 268 (274)
Q Consensus 264 l~v~~ 268 (274)
+-|+.
T Consensus 151 YEIlv 155 (226)
T COG2384 151 YEILV 155 (226)
T ss_pred EEEEE
Confidence 44433
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=64.47 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=66.5
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc-----------CCCC------
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI-----------YVPD------ 173 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-----------~LPf------ 173 (274)
+..++++|+ +|||+ |-.+...++.....|+++|.+++-+++|++- +.+++.-|.. ++..
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GAEFLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCeEEEeccccccccccchhhhcchhHHHHH
Confidence 356789999 99999 6666666554224899999999999999873 2333221111 1111
Q ss_pred ----C--CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 ----K--WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ----~--~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. -..+|+|+.+.+.-.-..|.-+.+++.+.+||||+++..
T Consensus 239 ~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 239 MALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 1 146999998865433223444469999999999999873
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=3.9e-05 Score=66.30 Aligned_cols=94 Identities=11% Similarity=-0.020 Sum_probs=58.7
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc---cccc
Q 023974 159 DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP---DVIV 233 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~---~~si 233 (274)
+.+.+++-.-.+.+|.++|.|+|.+..++-+. ..-..+++|.+|+|||||.|-|+-|... ...+.+.... ..-.
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~-f~~~~Y~~~vqvggpgp 107 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK-FLDWLYQHDVQVGGPGP 107 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc-hhHHHHhhhhhccCCCC
Confidence 34555443345679999999999988665543 2445889999999999999999866543 2333322210 0011
Q ss_pred ccCC------CHHHHHHHHHhCCCcE
Q 023974 234 SDLP------DQMTLQKAAGNHCFQI 253 (274)
Q Consensus 234 ~~fp------s~~eL~~ll~~aGF~~ 253 (274)
.+.| +..++.+.+..+||.+
T Consensus 108 ndhP~~r~v~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 108 NDHPLHRIVKTMRMMFNGFMDAGFVV 133 (185)
T ss_pred CCCcHHHHHHHHHHHHHHHHhhhhee
Confidence 1122 4556666777777744
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0025 Score=61.19 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=76.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCC-ceEEEeeccCCCCCCCCccEEEecccC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDT-VKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+|++|| .=+|-|.++..+++.+...|+|+|+.|.-++-.++. ..+ +..++||+.+++..-+.+|-|+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 4599999 999999999999888763499999999988887765 233 788999999998877999999998543
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-.+.+....+.+|+||.+..-
T Consensus 267 ----~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 267 ----SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred ----cchhhHHHHHHHhhcCcEEEEE
Confidence 2235566666678999998774
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=59.21 Aligned_cols=92 Identities=10% Similarity=-0.010 Sum_probs=61.5
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHh-C-CCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 112 GEIDESSKVL-VSISS-EEFVDRVVES-S-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~-~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+.+.++++|| +|||+ |.++..++++ . ..+|+++|.+++-++.|++ .... .. .+++. ++..+|+|+=..+-
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-~~---~~~~~-~~~g~d~viD~~G~ 232 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-YL---IDDIP-EDLAVDHAFECVGG 232 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-ee---hhhhh-hccCCcEEEECCCC
Confidence 3567899999 99987 5555565553 3 3689999999998888875 2221 11 11122 12248999865442
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. .-..++.+..+.|++||++++
T Consensus 233 ~---~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 233 R---GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred C---ccHHHHHHHHHhCcCCcEEEE
Confidence 1 124578888899999999987
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0043 Score=60.51 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=56.8
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHHH--------------------------------------HHHHHHHhcCCC
Q 023974 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLDQ--------------------------------------VFETLANRCSPG 207 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~~--------------------------------------al~el~RvLKPG 207 (274)
|....--|+.++.+.+++++.+||.....+ .|+-=++-|+||
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpG 230 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRG 230 (386)
T ss_pred ccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444478899999999999999763111 111124569999
Q ss_pred CEEEEEcCCCh--------h----HHHH-HHhhCcc---------------cccccCCCHHHHHHHHHhCC-CcEeEEEe
Q 023974 208 ARVVISHPQGR--------E----ALQK-QRKQFPD---------------VIVSDLPDQMTLQKAAGNHC-FQIDNFVD 258 (274)
Q Consensus 208 GrlvIs~~~gr--------~----~l~~-~~~~~~~---------------~si~~fps~~eL~~ll~~aG-F~~v~~~d 258 (274)
|+++++- .|| . .+.. +...|.+ ......|+.+|+++..++.| |.+...+.
T Consensus 231 G~mvl~~-~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 231 GAMFLVC-LGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred cEEEEEE-ecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEE
Confidence 9999962 111 0 1111 1112211 13467899999999999998 66655543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00082 Score=62.01 Aligned_cols=122 Identities=19% Similarity=0.106 Sum_probs=81.0
Q ss_pred ccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHH----HHHHH
Q 023974 82 DFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLF----VLAGI 154 (274)
Q Consensus 82 ~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~----ML~~A 154 (274)
.+..|-|..+-+.+.- -+---++.+.+++|++|| +|+++|........- +| +-|.||++|+. .+..|
T Consensus 128 kvEyRVWnPfrSKLAA------~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmA 201 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAA------GILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMA 201 (317)
T ss_pred cEEEEEeChHHHHHHH------HhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHh
Confidence 3566778764332211 123346677899999999 999999988777664 67 89999999974 44555
Q ss_pred HHhCCCceEEEeeccCCC---CCCCCccEEEecccCcCCCCHHHHH-HHHHHhcCCCCEEEEE
Q 023974 155 KEKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPAMPFPLDQVF-ETLANRCSPGARVVIS 213 (274)
Q Consensus 155 r~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~~~~d~~~al-~el~RvLKPGGrlvIs 213 (274)
+|.+|+--+.-||..-- ..-..+|+||+-. .+ +|..+++ -+..--||+||.++|+
T Consensus 202 -kkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDv-aq--pdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 202 -KKRTNIIPIIEDARHPAKYRMLVGMVDVIFADV-AQ--PDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred -hccCCceeeeccCCCchheeeeeeeEEEEeccC-CC--chhhhhhhhhhhhhhccCCeEEEE
Confidence 45567766777775421 1124789988652 22 2333333 3566789999999995
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0062 Score=58.24 Aligned_cols=100 Identities=15% Similarity=0.089 Sum_probs=67.0
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCC-ceEEEee---ccCC------CC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGE---LIYV------PD 173 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gD---ae~L------Pf 173 (274)
...+..+++.|++|| +|+|+ |-++-..++. +..+|+.+|+++.-|+.||+ +.. +...... .+++ -.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhc
Confidence 455668999999999 99998 5444444554 44899999999999999998 432 1111111 1110 02
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+..+|++|-..+.+.. .+.+ ...||+||.+++.
T Consensus 239 g~~~~d~~~dCsG~~~~--~~aa----i~a~r~gGt~vlv 272 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAEVT--IRAA----IKATRSGGTVVLV 272 (354)
T ss_pred cccCCCeEEEccCchHH--HHHH----HHHhccCCEEEEe
Confidence 23459999977776543 3444 4469999998874
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0078 Score=54.94 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=65.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC------CCCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV------PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L------Pf~~~sFD~V 181 (274)
+...+.++++|| .|+|. |.++..+++....+|++++.++++.+.+++ +. +..+..+-+.. ......+|+|
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LG-ADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hC-CCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 345678899999 87763 677777777543579999999999999865 32 22222111110 1234679998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+. ...++++.+.|++||+++..
T Consensus 237 id~~g~------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDFVGT------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 865332 46788999999999999874
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=60.21 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=76.4
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHh---C--CCceEEEeeccCC-C-CCCCCccE
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEK---Y--DTVKCWQGELIYV-P-DKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k---~--~~v~~~~gDae~L-P-f~~~sFD~ 180 (274)
.+...++++|| +|+|.|-=+..++... .+.|+|+|+++.-++..++. . .++.....|+..+ + .....||.
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccch
Confidence 46788999999 9999998877777763 38999999999988887754 3 3566777888876 2 23346999
Q ss_pred EEe----c-c-cCcCCCC----------------HHHHHHHHHHhc----CCCCEEEEEc
Q 023974 181 VFL----Y-F-LPAMPFP----------------LDQVFETLANRC----SPGARVVISH 214 (274)
Q Consensus 181 V~~----~-f-~l~~~~d----------------~~~al~el~RvL----KPGGrlvIs~ 214 (274)
|.+ + . .++--++ ..+.|+..++.+ ||||++|-++
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 983 2 1 2332222 135678889999 9999999864
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=52.56 Aligned_cols=50 Identities=8% Similarity=0.002 Sum_probs=41.5
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeec
Q 023974 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGEL 168 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDa 168 (274)
.|| ||||+|.++..+++.++ .+|+++|++++|.+.++++. +++.++++.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 378 99999999999988877 68999999999999988763 4567776554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0035 Score=59.41 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCC----
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPD---- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf---- 173 (274)
-++.+++.+.+.++..++ .=||.|--+..+++..+ ++|+|+|.++.+++.|+++.. ++.+++++..+++.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~ 87 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDE 87 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHh
Confidence 367888899989999999 99999999888888744 899999999999999998642 58888988877541
Q ss_pred -CCCCccEEEecccC--cCCCCHHHHHH
Q 023974 174 -KWGPLDVVFLYFLP--AMPFPLDQVFE 198 (274)
Q Consensus 174 -~~~sFD~V~~~f~l--~~~~d~~~al~ 198 (274)
..+++|.|++..+. ..+.++++.|.
T Consensus 88 ~~~~~vDgIl~DLGvSS~Qld~~~RGFS 115 (305)
T TIGR00006 88 LLVTKIDGILVDLGVSSPQLDDPERGFS 115 (305)
T ss_pred cCCCcccEEEEeccCCHhhcCCCCCCCc
Confidence 33679999987654 33457777776
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0069 Score=51.30 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=70.7
Q ss_pred cEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC--CCCCccEEEecccCcCCC------CHH---HHHHHHHH
Q 023974 140 LLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD--KWGPLDVVFLYFLPAMPF------PLD---QVFETLAN 202 (274)
Q Consensus 140 ~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf--~~~sFD~V~~~f~l~~~~------d~~---~al~el~R 202 (274)
+|.|.|+=++-|+..+++. .+++++..+=+++.. +.+++|+|+.|++.---. .++ .|++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5899999999999999874 248888877777653 225899999995532212 233 78999999
Q ss_pred hcCCCCEEEEE----cCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC----CeEEEEEEe
Q 023974 203 RCSPGARVVIS----HPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES----GFYLVVLKF 269 (274)
Q Consensus 203 vLKPGGrlvIs----~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~----~~yl~v~~~ 269 (274)
.|+|||+++|. |+.|.. +. .+ ..++.+-+.+..|++..+.--+ .-++++++|
T Consensus 81 lL~~gG~i~iv~Y~GH~gG~e---E~-~a-----------v~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHPGGKE---ES-EA-----------VEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HEEEEEEEEEEE--STCHHHH---HH-HH-----------HHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred hhccCCEEEEEEeCCCCCCHH---HH-HH-----------HHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 99999999884 443322 11 11 1233444455678887776532 335666554
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00081 Score=67.33 Aligned_cols=62 Identities=8% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCC
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYV 171 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~L 171 (274)
=+.+++..+..+| |+||||.+...+++.. .+|+||.++++-++-|++.. .|.+|++|-+|++
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 3456888888888 9999999999997754 69999999999999998752 3689999988875
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00027 Score=55.21 Aligned_cols=92 Identities=22% Similarity=0.167 Sum_probs=42.3
Q ss_pred E-EEcCchHHHHHHHHhCC----CcEEEEeCcH---HHHHHHHH-hC-CCceEEEeeccCC-C-CCCCCccEEEecccCc
Q 023974 121 L-VSISSEEFVDRVVESSP----SLLLVVHDSL---FVLAGIKE-KY-DTVKCWQGELIYV-P-DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 121 L-vGcGTG~l~~~L~~~~~----~~V~gVD~S~---~ML~~Ar~-k~-~~v~~~~gDae~L-P-f~~~sFD~V~~~f~l~ 188 (274)
| |||..|..+..+++..+ .++++||..+ ..-+..++ .+ .++++++||..+. + +.++++|+|++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 5 78889988877765421 3799999999 44444443 23 3589999998653 2 2258999999764 33
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
........++.+.+.|+|||.+++-
T Consensus 80 ~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 SYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3345567888899999999988763
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.039 Score=48.13 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=62.1
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEEEecc
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVVFLYF 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V~~~f 185 (274)
.+.++++|| .|+|+ |..+..+++....+|++++.+++..+.+++... ...+...-... ....+.+|+|+.+.
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA-DHVIDYKEEDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-ceeccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence 347899999 99986 666666666533699999999998888865421 11111110011 11246799999654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- ...+..+.+.|+++|+++..
T Consensus 210 ~~------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 210 GG------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CC------HHHHHHHHHhcccCCEEEEE
Confidence 32 14577778889999999974
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=54.00 Aligned_cols=97 Identities=11% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---ec----cCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---EL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---Da----e~LPf~~~sF 178 (274)
.....+.++++|| .|||+ |.++..+++... .+|+++|.+++-++.+++ +..-.++.. |. .++. ....+
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~i~~~~-~~~g~ 246 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGATHTVNSSGTDPVEAIRALT-GGFGA 246 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEEcCCCcCHHHHHHHHh-CCCCC
Confidence 4446788999999 88765 555666666533 369999999999999865 332222211 11 1111 22468
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-..+- ..++.+..+.|++||++++.
T Consensus 247 d~vid~~g~------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 247 DVVIDAVGR------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CEEEECCCC------HHHHHHHHHHhccCCEEEEE
Confidence 999855432 24677788899999999973
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=55.37 Aligned_cols=98 Identities=15% Similarity=0.020 Sum_probs=63.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~ 180 (274)
.+...+.++++|| .|+|. |.++..+++... .+|+++|.+++-++.|++ +....++..+-++ +- ...+.+|+
T Consensus 184 ~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 184 VNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 4456788999999 88765 556666666533 379999999999998865 3321222111111 11 11236899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ...+.+..+.|++||++++.
T Consensus 263 vid~~G~------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGS------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCC------hHHHHHHHHHHhcCCEEEEE
Confidence 9865331 25677788899999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0066 Score=60.82 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=83.7
Q ss_pred CeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCc---CCC
Q 023974 118 SKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPA---MPF 191 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~---~~~ 191 (274)
-.|+ ..+|.|-|+++|.+..- -.|+-+ ..+..|.+.-+|-- +-...--.|.++..+.+||+|=++..+. +--
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL-IG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC 444 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL-IGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRC 444 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc-chhccchhhccCCCCcchhheehhhhhhhhcccc
Confidence 4689 99999999999976532 344444 44445555544411 1111112466888899999998773332 223
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCC----eEEEEE
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESG----FYLVVL 267 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~----~yl~v~ 267 (274)
+.+.++-||-|+|||||.++|-+.. .. .++++.++.+..|+...+..+++ -=++|+
T Consensus 445 ~~~~illEmDRILRP~G~~iiRD~~--~v------------------l~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~ 504 (506)
T PF03141_consen 445 EMEDILLEMDRILRPGGWVIIRDTV--DV------------------LEKVKKIAKSLRWEVRIHDTEDGPDGPEKILIC 504 (506)
T ss_pred cHHHHHHHhHhhcCCCceEEEeccH--HH------------------HHHHHHHHHhCcceEEEEecCCCCCCCceEEEE
Confidence 7889999999999999999997542 22 24666777777787665544442 235555
Q ss_pred Ee
Q 023974 268 KF 269 (274)
Q Consensus 268 ~~ 269 (274)
+|
T Consensus 505 ~K 506 (506)
T PF03141_consen 505 QK 506 (506)
T ss_pred EC
Confidence 54
|
; GO: 0008168 methyltransferase activity |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.023 Score=53.15 Aligned_cols=94 Identities=7% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEeccc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+....+.+|++|| .|+|. |.++..+++....+|+++|.+++=++.|++---+. .+ |..+. ..+.+|+++..-+
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-vi--~~~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-AG--GAYDT--PPEPLDAAILFAP 232 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-ec--ccccc--CcccceEEEECCC
Confidence 3446788999999 99764 55555566553357999999999888887632221 11 11111 1246887765432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. ...+.+..+.|++||++++.
T Consensus 233 ~------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 A------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred c------HHHHHHHHHhhCCCcEEEEE
Confidence 2 24688888999999999883
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0093 Score=60.18 Aligned_cols=96 Identities=10% Similarity=0.044 Sum_probs=65.1
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----------------------
Q 023974 115 DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY---------------------- 170 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~---------------------- 170 (274)
.++++|| +|+|. |..+..+++.....|+++|.+++-++.+++ ++ .+++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-AEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-CeEEeccccccccccccceeecCHHHHHHHHH
Confidence 4568999 99998 566555555422479999999998888876 33 2332222111
Q ss_pred -CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 171 -VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 171 -LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++..-..+|+|+.+..+.-...|.-+.+++.+.+|||+.++-
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 332346799998776443333555688999999999999874
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0092 Score=53.53 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccE
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~ 180 (274)
+.+.+....-.|.||| +|+|+|-.+...++.+...|++.|+.+..++.++-+.. ++.+...|..- .+..||+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDL 145 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeE
Confidence 4555666677889999 99999988877777776899999999888777664432 35677777533 6789999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|..+-.+-+-.--.+.+.-..|....|-.++|.+|.
T Consensus 146 ~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 146 LLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred EEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999855544434456666445555555566667654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0098 Score=53.75 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=38.4
Q ss_pred eEEEeeccCC--CCCCCCccEEEec--ccC--cCCCC-----------HHHHHHHHHHhcCCCCEEEEE
Q 023974 162 KCWQGELIYV--PDKWGPLDVVFLY--FLP--AMPFP-----------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 162 ~~~~gDae~L--Pf~~~sFD~V~~~--f~l--~~~~d-----------~~~al~el~RvLKPGGrlvIs 213 (274)
++.+||+.++ .++++++|+|+.. |.. +.-.+ .++++.|++|||||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5678898775 5778999999976 432 11000 257899999999999999884
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=53.91 Aligned_cols=91 Identities=9% Similarity=0.005 Sum_probs=60.0
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeC---cHHHHHHHHHhCCCceEEE---eeccCCCCCCCCccEEEec
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHD---SLFVLAGIKEKYDTVKCWQ---GELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~---S~~ML~~Ar~k~~~v~~~~---gDae~LPf~~~sFD~V~~~ 184 (274)
++.++++|| +|+|+ |.++..+++....+|+++|- +++=++.+++ +.. ..+. .|.++. ...+.+|+|+-+
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~Ga-~~v~~~~~~~~~~-~~~~~~d~vid~ 245 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LGA-TYVNSSKTPVAEV-KLVGEFDLIIEA 245 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC-EEecCCccchhhh-hhcCCCCEEEEC
Confidence 356889999 98876 66666776653358999986 6777777765 321 2221 111111 123569999876
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+- ...+.+..+.||+||++++
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 246 TGV------PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred cCC------HHHHHHHHHHccCCcEEEE
Confidence 542 2467888899999999987
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.029 Score=51.88 Aligned_cols=98 Identities=12% Similarity=-0.034 Sum_probs=62.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEe---eccCCC-C-CCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQG---ELIYVP-D-KWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~g---Dae~LP-f-~~~sFD~ 180 (274)
+..+.+.++++|| .|+|+ |.++..+++....+ |+++|.+++-++.+++ +..-.++.. +.+.+. . ....+|+
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA-LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 4556788899999 88765 45555565553345 9999999998888865 332122211 111111 1 2347999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..++.+..+.|++||++++.
T Consensus 235 vid~~g~------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 235 AIECSGN------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 9865332 34567778889999999873
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.023 Score=51.69 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=62.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-----eccCCCCCCCCcc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-----ELIYVPDKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-----Dae~LPf~~~sFD 179 (274)
.+......++++|| .|+|+ |.++..+++... ..|+++|.+++-++.|++---+ .++.. .+.++. ....+|
T Consensus 112 al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~-~~~g~d 189 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-ALAEPEVLAERQGGLQ-NGRGVD 189 (280)
T ss_pred HHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-EecCchhhHHHHHHHh-CCCCCC
Confidence 34445566899999 98865 555666666533 3599999999988888763221 11110 011111 224689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ..++++..+.|+|||++++.
T Consensus 190 ~vid~~G~------~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEFSGA------TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEECCCC------hHHHHHHHHHhcCCCEEEEe
Confidence 99865432 35788888999999999973
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=53.37 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=57.3
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 115 DESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
.++++|| +|||+ |.++..+++... ..|+++|..++.++.|++.. .+ |..+. ....+|+|+-+.+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----~i--~~~~~--~~~g~Dvvid~~G~---- 210 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----VL--DPEKD--PRRDYRAIYDASGD---- 210 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----cc--Chhhc--cCCCCCEEEECCCC----
Confidence 3578999 99876 667777766533 45778899999988886531 11 11110 23569999876442
Q ss_pred CHHHHHHHHHHhcCCCCEEEE
Q 023974 192 PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvI 212 (274)
...+.++.+.|+|||++++
T Consensus 211 --~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 211 --PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred --HHHHHHHHHhhhcCcEEEE
Confidence 2456777888999999997
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0066 Score=54.38 Aligned_cols=92 Identities=9% Similarity=-0.023 Sum_probs=70.8
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh--CC---CceEEEeeccCCCCCCCCccEEEeccc--CcC
Q 023974 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK--YD---TVKCWQGELIYVPDKWGPLDVVFLYFL--PAM 189 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k--~~---~v~~~~gDae~LPf~~~sFD~V~~~f~--l~~ 189 (274)
+.+- +|+|||.++...++.. .+|+||...+..-+.|+++ .+ +++.+.|||.+..| +.-|+|+|-.. .-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaLi 110 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTALI 110 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHhh
Confidence 5677 9999999887776654 5999999999999999988 33 57889999999988 77899998732 112
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+..-.+++.+..-||-.|.++=
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 22333677777778888888753
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.13 Score=46.18 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-eccCC--------CCCCCCccEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-ELIYV--------PDKWGPLDVV 181 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-Dae~L--------Pf~~~sFD~V 181 (274)
+.|+++|| +||-+|.-+....++ +| +.|.|||+=.- .-.+++.+++| |+.+- -+++-..|+|
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------cCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 36899999 999999999888777 47 99999998531 12235667766 55331 0245889999
Q ss_pred EecccCcC----CCCHHH-------HHHHHHHhcCCCCEEEEEcCCC
Q 023974 182 FLYFLPAM----PFPLDQ-------VFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 182 ~~~f~l~~----~~d~~~-------al~el~RvLKPGGrlvIs~~~g 217 (274)
++-..+.- .-|... ++.-....++|+|.+++--..|
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 97654422 124333 2333345689999999953333
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.05 Score=51.34 Aligned_cols=96 Identities=9% Similarity=0.048 Sum_probs=64.7
Q ss_pred HhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC-CC-CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY-VP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~-LP-f~~~sFD~ 180 (274)
+...+.+|++|| .|+ | .|.++..+++....+|++++.+++-++.+++++..-.++.. |..+ +. ...+.+|+
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEE
Confidence 446788999999 887 3 57777777775335899999999998888755543222221 1111 10 11246899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.+..+.|++||++++
T Consensus 232 v~d~vG-------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 232 YFDNVG-------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEE
Confidence 986543 1467788889999999987
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.048 Score=49.98 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=63.2
Q ss_pred HhCCCCCCCeEE-EEcC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-CCCCCccEEEeccc
Q 023974 110 SAGEIDESSKVL-VSIS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-DKWGPLDVVFLYFL 186 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-f~~~sFD~V~~~f~ 186 (274)
....+.++++|| .||| .|..+..+++....+|++++.++++++.+++ ...-.++..+-+... ...+.+|+|+...+
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-LGADEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-hCCcEEeccCCcchHHhccCCCCEEEECCC
Confidence 346788899999 8886 5666666666533589999999999998855 332122211111110 01246999886432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ..++.++.+.|+++|+++..
T Consensus 235 ~------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 235 S------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred c------HHHHHHHHHhcccCCEEEEE
Confidence 1 34678888999999999874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.062 Score=49.07 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=62.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
++....+.++++|| .|+|. |.++..+++....+|++++.+++.++.+++ +. +... -+..+. ...+.+|+|+-+.
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g-~~~~-~~~~~~-~~~~~~d~vid~~ 222 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG-VETV-LPDEAE-SEGGGFDVVVEAT 222 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC-CcEE-eCcccc-ccCCCCCEEEECC
Confidence 44566788999999 76543 333334444322479999999999999987 43 2111 111111 2446799998653
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- ...+..+.+.|++||++++.
T Consensus 223 g~------~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 223 GS------PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred CC------hHHHHHHHHHhhcCCEEEEE
Confidence 21 35677888899999999973
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.046 Score=52.08 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=62.4
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----c----cCCCCCCCC
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----L----IYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----a----e~LPf~~~s 177 (274)
+...+.+|++|| .|||+ |.++..+++... .+|+++|.+++-++.|++ +..-.++..+ . .++. .+.
T Consensus 192 ~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~~i~~~~~~~~~~~~v~~~~--~~g 268 (381)
T PLN02740 192 NTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGITDFINPKDSDKPVHERIREMT--GGG 268 (381)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCCcEEEecccccchHHHHHHHHh--CCC
Confidence 446788999999 98876 555566666533 369999999999999965 3322222211 1 1121 226
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvI 212 (274)
+|+|+-..+- ..++.+..+.+++| |++++
T Consensus 269 ~dvvid~~G~------~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 269 VDYSFECAGN------VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCEEEECCCC------hHHHHHHHHhhhcCCCEEEE
Confidence 9999865442 24677777789997 99887
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.049 Score=50.22 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee---ccCCCCCCCCccEEEecc
Q 023974 112 GEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE---LIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---ae~LPf~~~sFD~V~~~f 185 (274)
+...++.+|| .|||. |..+..+++... .+|++++.++++.+.+++ ++.-.++..+ ..++....+.+|+|+-+.
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-MGADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 3333889999 87765 666666666533 379999999999986655 3321222111 112332334599998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...++++.+.|+++|+++..
T Consensus 240 g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 240 GA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CC------HHHHHHHHHHHhcCCEEEEE
Confidence 32 35688889999999999863
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.03 Score=57.63 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=62.5
Q ss_pred CeEE-EEcCchHHHHHHHH-------hCC------CcEEEEeC---cHHHHHHHHHhC--------------C-------
Q 023974 118 SKVL-VSISSEEFVDRVVE-------SSP------SLLLVVHD---SLFVLAGIKEKY--------------D------- 159 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~-------~~~------~~V~gVD~---S~~ML~~Ar~k~--------------~------- 159 (274)
=+|| +|=|||.....+.+ ..+ -++++++. +.+-|+.+-+.+ |
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 4788 99999975443321 111 47899984 455555543221 1
Q ss_pred ---------CceEEEeeccC-CCCCCCCccEEEec-ccCcCCCCH--HHHHHHHHHhcCCCCEEEE
Q 023974 160 ---------TVKCWQGELIY-VPDKWGPLDVVFLY-FLPAMPFPL--DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 160 ---------~v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~~~d~--~~al~el~RvLKPGGrlvI 212 (274)
.++++.||+.+ ++.-...||+++.= |.+...++. ++.|++|+|.++|||+++=
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 13467799876 45434679999976 777543222 5899999999999999974
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.072 Score=51.37 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=62.5
Q ss_pred hCCCCCCCeEE-EE-cCc-hHHHHHHHHh-C--CCcEEEEeCcHHHHHHHHHhCC------Cce--EEEe----ecc---
Q 023974 111 AGEIDESSKVL-VS-ISS-EEFVDRVVES-S--PSLLLVVHDSLFVLAGIKEKYD------TVK--CWQG----ELI--- 169 (274)
Q Consensus 111 ~~~~~~~~rVL-vG-cGT-G~l~~~L~~~-~--~~~V~gVD~S~~ML~~Ar~k~~------~v~--~~~g----Dae--- 169 (274)
...+.++++|| +| +|+ |.++..+++. + ..+|+++|.+++-++.|++.++ ... ++.. |..
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATL 249 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHH
Confidence 45678899999 87 454 7777767665 2 2479999999999999988633 222 2211 110
Q ss_pred -CCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 170 -YVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 170 -~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++. ....+|+|+...+- ..++.+..+.++++|++++
T Consensus 250 ~~~t-~g~g~D~vid~~g~------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 250 MELT-GGQGFDDVFVFVPV------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHh-CCCCCCEEEEcCCC------HHHHHHHHHHhccCCeEEE
Confidence 111 23469998865331 3577888889999998765
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.068 Score=47.71 Aligned_cols=97 Identities=12% Similarity=-0.037 Sum_probs=62.4
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
+....+.++++|| .|||. |..+..+++....+ |+++|.+++.++.+++.-..-.++...- .. .....+|+|+-+.
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~~~~d~vl~~~ 167 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-DE-IGGRGADVVIEAS 167 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-hh-hcCCCCCEEEEcc
Confidence 3456788999999 87765 55555555543345 9999999999997776430111111110 11 1345699998643
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...+.+..+.|+++|+++..
T Consensus 168 ~~------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 168 GS------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CC------hHHHHHHHHHhcCCcEEEEE
Confidence 22 34678888899999999863
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.056 Score=50.36 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=60.9
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee---ccCCC--CCCCCcc-
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE---LIYVP--DKWGPLD- 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---ae~LP--f~~~sFD- 179 (274)
+....+.++++|| .|+|+ |.++..+++... ..|+++|.+++-++.+++ +..-.++..+ .+++- .....+|
T Consensus 153 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 153 FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCceEecCcccCHHHHHHHhcCCCCCe
Confidence 3445678899999 88766 555555665533 348999999999988854 3321222111 11110 1234677
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ...+.+..+.|+|||++++.
T Consensus 232 ~v~d~~G~------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILETAGV------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 65543332 35778888999999999884
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.037 Score=52.43 Aligned_cols=95 Identities=5% Similarity=-0.013 Sum_probs=57.7
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEecccCcC
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+.++++|| .|+|+ |.++..+++....+|+++|.+.+-...+.+++..-.++. .+.+.+....+.+|+|+-..+-
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-- 257 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-- 257 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC--
Confidence 456889999 88765 555556666533578999888766544444443212221 1111111111358999865441
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..++.+..+.|++||++++.
T Consensus 258 ----~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 258 ----VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred ----HHHHHHHHHHhcCCcEEEEe
Confidence 24678888999999999863
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=52.84 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=60.4
Q ss_pred HHHHHhCCCCCCC--eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH---hC-----------CCceEEEeec
Q 023974 106 DQIISAGEIDESS--KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE---KY-----------DTVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~~--rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~---k~-----------~~v~~~~gDa 168 (274)
..+++++++++|. +|| +-+|+|..+..++.+| +.|++||-++.+.+..++ +. .+++.+.+|+
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4678888999998 999 9999999999998887 479999999997766553 21 2366778888
Q ss_pred cCC-CCCCCCccEEEec
Q 023974 169 IYV-PDKWGPLDVVFLY 184 (274)
Q Consensus 169 e~L-Pf~~~sFD~V~~~ 184 (274)
.+. .-...+||+|++=
T Consensus 155 ~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 155 LTALTDITPRPQVVYLD 171 (250)
T ss_pred HHHHhhCCCCCcEEEEC
Confidence 664 2223479999954
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.081 Score=51.10 Aligned_cols=102 Identities=11% Similarity=-0.043 Sum_probs=64.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEE---eec----cCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa----e~LPf~~~sF 178 (274)
+....+.++++|| .|+|+ |.++..+++. +...|+++|.+++-++.|++---. .+.. .+. .++. ....+
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~-~~~g~ 255 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQIL-GEPEV 255 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHc-CCCCC
Confidence 3446788999999 77765 5555556554 334577789999888888874211 1211 111 1111 23469
Q ss_pred cEEEecccCc--------CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 179 DVVFLYFLPA--------MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~--------~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-..+.. ...++..++++..+.+++||++++
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 256 DCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 9998654432 112334689999999999999998
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.048 Score=53.75 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=63.2
Q ss_pred HHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 105 IDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
+..+++..++ -+|++|+ +|||. |..+..+++....+|+++|.++.-++.|++- ++... +.++. -..+|+|
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~--G~~~~--~~~e~---v~~aDVV 261 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME--GYEVM--TMEEA---VKEGDIF 261 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc--CCEEc--cHHHH---HcCCCEE
Confidence 4566666554 5789999 99998 6666655554325899999999988888763 22221 11111 1357999
Q ss_pred EecccCcCCCCHHHHHH-HHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+.+-+- ..++. +..+.+|+||+++..
T Consensus 262 I~atG~------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTGN------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCCC------HHHHHHHHHhcCCCCcEEEEe
Confidence 876432 23454 458899999999763
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.094 Score=48.84 Aligned_cols=96 Identities=14% Similarity=0.080 Sum_probs=63.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++++|| .|+|+ |.++..+++... ..|+++|.+++.++.+++ +..-.++..+ +..+. ....+
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGATDIVDYKNGDVVEQILKLT-GGKGV 236 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCceEecCCCCCHHHHHHHHh-CCCCC
Confidence 3456788999999 87653 555556665533 469999999999888876 3321222111 11111 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-+.+- ..++.++.+.|+++|+++.
T Consensus 237 d~vld~~g~------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 237 DAVIIAGGG------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred cEEEECCCC------HHHHHHHHHHhhcCCEEEE
Confidence 999865332 3578899999999999986
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.099 Score=48.30 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=61.7
Q ss_pred HhCCCCCC--CeEE-EEc--CchHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCc
Q 023974 110 SAGEIDES--SKVL-VSI--SSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~--~rVL-vGc--GTG~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sF 178 (274)
+...+.++ ++|| .|+ |.|.++..+++.... +|++++-+++..+.+++++..-.++..+-+++. ..+..+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCc
Confidence 34456665 8999 775 457777777665434 799999999988888876543222221111110 122569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-..+ . ..+.+..+.|++||+++.
T Consensus 226 d~vid~~g-----~--~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDNVG-----G--EISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEECCC-----c--HHHHHHHHHhccCCEEEE
Confidence 99986433 1 235778889999999986
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=48.07 Aligned_cols=97 Identities=15% Similarity=0.070 Sum_probs=64.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee----------ccCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE----------LIYVPDKW 175 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD----------ae~LPf~~ 175 (274)
+....+.++++|| .|+|+ |.++..+++....+ |++++-+++..+.+++. ..-.++..+ +.++ ...
T Consensus 155 ~~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~~vi~~~~~~~~~~~~~~~~~-~~~ 232 (343)
T cd05285 155 CRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GATHTVNVRTEDTPESAEKIAEL-LGG 232 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCcEEeccccccchhHHHHHHHH-hCC
Confidence 4567889999999 77665 56666666654345 99999999988888653 221222111 1112 234
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- ...+.++.+.|+++|+++..
T Consensus 233 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 569999865432 23688889999999999874
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.077 Score=48.58 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=63.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCC----CCCCCCccEEE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYV----PDKWGPLDVVF 182 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L----Pf~~~sFD~V~ 182 (274)
....+.++++|| .|+|. |..+..+++....+ |++++-+++..+.+++.... .++..+-... ......+|+|+
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 556788999999 87653 55555565553334 89999999999988654322 2222221111 11346799999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+ ....+.++.+.|+++|+++..
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEE
Confidence 6532 136788889999999999874
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0094 Score=54.43 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCC----CCCCCCccEEEec
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYV----PDKWGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~L----Pf~~~sFD~V~~~ 184 (274)
.+.|+ ..||-|--+...+.+++ .|++||+++.=|+.||+.. | .++|+|||..++ -+...-+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 35777 77777666666666675 8999999999999999873 2 489999998764 3555557787765
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.095 Score=49.09 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE---eeccCC----C--CCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GELIYV----P--DKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDae~L----P--f~~~s 177 (274)
+....+.++++|| .|||+ |.++..+++....+|+++|.+++.++.|++ +..-.++. -|.+++ . -....
T Consensus 159 ~~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-FGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hCCceEecCccccHHHHHHHHHhhcccCC
Confidence 3446788899999 99976 666666666533589999999999999865 33211221 110011 0 01123
Q ss_pred cc----EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LD----VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD----~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+| +|+-+.+- ..++....+.|++||++++.
T Consensus 238 ~d~~~d~v~d~~g~------~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 238 LRSTGWKIFECSGS------KPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCCcCEEEECCCC------hHHHHHHHHHHhcCCeEEEE
Confidence 44 56533221 34677778889999999874
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.14 Score=44.32 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=71.9
Q ss_pred EEcCchHHHHHHHHh-C-CCcEEEEeCcHHHHHHHHHhCC------------CceE-EEeeccCCCC----CCCCccEEE
Q 023974 122 VSISSEEFVDRVVES-S-PSLLLVVHDSLFVLAGIKEKYD------------TVKC-WQGELIYVPD----KWGPLDVVF 182 (274)
Q Consensus 122 vGcGTG~l~~~L~~~-~-~~~V~gVD~S~~ML~~Ar~k~~------------~v~~-~~gDae~LPf----~~~sFD~V~ 182 (274)
||=|-=.++..|++. + +..++|--+..+ +...+||+ ++.. ..-||++|.. ....||.|+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~--~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSE--EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCch--HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 555555566677775 3 356666544333 33334443 2232 3578887763 458999999
Q ss_pred ecccCcCC---C-----------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHh
Q 023974 183 LYFLPAMP---F-----------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 183 ~~f~l~~~---~-----------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~ 248 (274)
.+|- |.- . =....|+...++|+++|.+.|++..+.+ +..| ++.+++++
T Consensus 81 FNFP-H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-----y~~W------------~i~~lA~~ 142 (166)
T PF10354_consen 81 FNFP-HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-----YDSW------------NIEELAAE 142 (166)
T ss_pred EeCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----Cccc------------cHHHHHHh
Confidence 8863 221 0 0235677889999999999998766543 1222 45567788
Q ss_pred CCCcEeEEEe
Q 023974 249 HCFQIDNFVD 258 (274)
Q Consensus 249 aGF~~v~~~d 258 (274)
+||....-.+
T Consensus 143 ~gl~l~~~~~ 152 (166)
T PF10354_consen 143 AGLVLVRKVP 152 (166)
T ss_pred cCCEEEEEec
Confidence 8887766554
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.15 Score=46.57 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=63.0
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V 181 (274)
...++.+|++|| .|. |.|.++..+++....+|++++-+++-.+.+++ +.--.++...-+++ ....+.+|+|
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFDAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCCEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 456788999999 773 44667777766543589999999998888876 43222222111111 0112568998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+-..+ ...+.+..+.|++||++++
T Consensus 216 ld~~g-------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 216 FDNVG-------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred EECCC-------HHHHHHHHHhhccCCEEEE
Confidence 85433 2457888899999999986
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.1 Score=49.78 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=60.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe-----eccC-CC-CCCCCcc
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG-----ELIY-VP-DKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-----Dae~-LP-f~~~sFD 179 (274)
+...+.++++|| .|+|+ |.++..+++... ..|+++|.+++-++.|++ +.--.++.. ++.+ +. ...+.+|
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~-lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT-FGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 345678899999 98766 555555655433 469999999999988865 332112211 1111 10 1123699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvI 212 (274)
+|+-..+- ..++.+..+.|++| |++++
T Consensus 266 ~vid~~G~------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGD------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCC------hHHHHHHHHhhccCCCEEEE
Confidence 99865432 24677778889999 99986
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.016 Score=53.80 Aligned_cols=55 Identities=9% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CceEEEeeccCC--CCCCCCccEEEec--ccCc-CCC-------------CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 160 TVKCWQGELIYV--PDKWGPLDVVFLY--FLPA-MPF-------------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 160 ~v~~~~gDae~L--Pf~~~sFD~V~~~--f~l~-~~~-------------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.++++||+.++ .+++++||+|++. |... ... -.++.+.++.|+|||||.++|..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 356788999884 3568999999986 4331 100 12578999999999999999863
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.18 Score=46.81 Aligned_cols=96 Identities=9% Similarity=0.058 Sum_probs=64.5
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE---e-eccC-C-CCCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---G-ELIY-V-PDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---g-Dae~-L-Pf~~~sFD~ 180 (274)
+..++.+|++|| .|+ |.|.++..+++....+|++++-+++-.+.+++++..-.++. . |..+ + -...+.+|+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~ 224 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDI 224 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEE
Confidence 446788999999 876 34677777776533589999999999888887554222222 1 1111 0 011257999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-..+ ...+.+..+.|++||++++
T Consensus 225 v~d~~g-------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 225 YFDNVG-------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred EEECCC-------HHHHHHHHHHhccCcEEEE
Confidence 986533 2467888899999999987
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.14 Score=48.56 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=62.2
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE-e----e----ccCCCCCCCC
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ-G----E----LIYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~-g----D----ae~LPf~~~s 177 (274)
+...+.++++|| .|||+ |.++..+++... .+|+++|.+++-++.|++- ..-..+. . + +.++. .+.
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga~~~i~~~~~~~~~~~~v~~~~--~~g 255 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GATDCVNPNDYDKPIQEVIVEIT--DGG 255 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCeEEcccccchhHHHHHHHHh--CCC
Confidence 456788999999 98865 566666666543 3799999999999998653 2211111 1 1 11111 236
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-..+- ..++.+..+.+++| |++++.
T Consensus 256 ~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 256 VDYSFECIGN------VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCCeEEEE
Confidence 8998865331 34677778889997 999863
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.16 Score=46.76 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=63.3
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC-C-CCCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY-V-PDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~-L-Pf~~~sFD 179 (274)
.+..++.+|++|| .|. |.|.++..+++....+|++++-+++-++.+++ +.--.++.. +.++ + ....+.+|
T Consensus 131 ~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 131 LEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGFDVAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred HHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCCEEEeccccccHHHHHHHhCCCCeE
Confidence 3556788999999 874 35777777777533589999999998888865 332112211 1111 0 01134699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ..+.++.+.|+|||++++.
T Consensus 210 vv~d~~G~-------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 210 CYFDNVGG-------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEECCCH-------HHHHHHHHHhCcCcEEEEe
Confidence 99854331 3457788899999999973
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=47.52 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=61.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
....+.++++|| .|+|+ |..+..+++... ..|++++-+++..+.+++.. ...++... +..+. .++.+|
T Consensus 161 ~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~~~vi~~~~~~~~~~i~~~~-~~~~~d 238 (347)
T cd05278 161 ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-ATDIINPKNGDIVEQILELT-GGRGVD 238 (347)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-CcEEEcCCcchHHHHHHHHc-CCCCCc
Confidence 345677889999 66653 556666666543 47999999998888877542 21222111 11111 235799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+- ...+.++.+.|+++|+++..
T Consensus 239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 99854321 25788889999999999864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.15 Score=48.03 Aligned_cols=94 Identities=6% Similarity=-0.014 Sum_probs=58.8
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEecccCcCC
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
..++++|| .|+|. |.++..+++....+|++++.+++..+.+.+++..-..+. .+.+.+......+|+|+-..+-
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~--- 254 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPV--- 254 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCc---
Confidence 46889999 87654 555556665533578999999888777766665322221 1111111112358988854331
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|++||+++..
T Consensus 255 ---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 255 ---FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred ---hHHHHHHHHHhccCCEEEEE
Confidence 24677778899999999874
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=41.45 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCCCCeEE-EEcCchHHHHHH-HHhC-CCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccC-CCC-CCCCccEEEe
Q 023974 113 EIDESSKVL-VSISSEEFVDRV-VESS-PSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIY-VPD-KWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L-~~~~-~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~-LPf-~~~sFD~V~~ 183 (274)
+--.|.+|| || -++++... +-.+ +.+|+.+|+.+.+|+-.++. --++++.+.|+.+ ||. --+.||+++.
T Consensus 41 gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 41 GDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp T-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred CcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence 333567888 77 55554322 2223 48999999999999775532 2248999999876 663 3589999997
Q ss_pred c--ccCcCCCCHHHHHHHHHHhcCCCC-EEEE
Q 023974 184 Y--FLPAMPFPLDQVFETLANRCSPGA-RVVI 212 (274)
Q Consensus 184 ~--f~l~~~~d~~~al~el~RvLKPGG-rlvI 212 (274)
- +++ +-..-.+..-...||.-| ..++
T Consensus 119 DPPyT~---~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 119 DPPYTP---EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---SSH---HHHHHHHHHHHHTB-STT-EEEE
T ss_pred CCCCCH---HHHHHHHHHHHHHhCCCCceEEE
Confidence 5 333 233455666667788767 4344
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.23 Score=45.43 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=59.8
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
....+.++++|| .|||. |.++..+++....+|++++.+.+..+.+++ +. +.... +.... ..+.+|+++.....
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~-~~~~~--~~~~vD~vi~~~~~ 235 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LG-ADWAG-DSDDL--PPEPLDAAIIFAPV 235 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hC-CcEEe-ccCcc--CCCcccEEEEcCCc
Confidence 556788899999 76553 333334444433689999999998888844 43 22211 11112 23568988753221
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.++.|.|++||++++.
T Consensus 236 ------~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 236 ------GALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ------HHHHHHHHHHhhcCCEEEEE
Confidence 24788899999999999974
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=46.35 Aligned_cols=97 Identities=19% Similarity=0.055 Sum_probs=65.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
+....+.++++|| .|+|. |..+..+++....+|+++.-+++..+.+++.. .-.++... +..+ ..+..+|
T Consensus 152 ~~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~~~v~~~~~~~~~~~l~~~-~~~~~vd 229 (337)
T cd08261 152 VRRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-ADDTINVGDEDVAARLREL-TDGEGAD 229 (337)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-CCEEecCcccCHHHHHHHH-hCCCCCC
Confidence 3456788999999 87764 66666676653368999989999998886533 21222111 1111 1345699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+...+- ...+.++.+.|+++|+++..
T Consensus 230 ~vld~~g~------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 99865431 35688889999999999864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.23 Score=46.95 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee---------ccCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE---------LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---------ae~LPf~~~ 176 (274)
.+...+.++++|| .|+|. |.++..+++.... .|+++|.+++-++.+++ +..-.++..+ +.++ .++
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa~~~i~~~~~~~~~~~~v~~~--~~~ 255 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGATDCVNPKDHDKPIQQVLVEM--TDG 255 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCEEEcccccchHHHHHHHHH--hCC
Confidence 3456788999999 88764 5555556655333 79999999999998865 3322222111 1111 123
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
.+|+|+-..+- ..++.+..+.|++| |++++.
T Consensus 256 g~d~vid~~g~------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 256 GVDYTFECIGN------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCcEEEECCCC------hHHHHHHHHhhccCCCeEEEE
Confidence 69999865331 34677788889997 999873
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.044 Score=50.66 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=54.1
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC--CCCccEEEec
Q 023974 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK--WGPLDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~--~~sFD~V~~~ 184 (274)
+|+ +-||.|-+...+.+.+-..|.++|+.+..++..++++++. .+++|+.++... ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeC
Confidence 689 9999999988887766567899999999999999998865 678999888643 3679999966
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.27 Score=45.93 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=57.6
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee----------ccCCCCCCCCccE
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE----------LIYVPDKWGPLDV 180 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD----------ae~LPf~~~sFD~ 180 (274)
..++++|| .|+|. |.++..+++.... +|++++-+++-.+.+++ ..--.++..+ +.++. ....+|+
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~d~ 252 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGADATIDIDELPDPQRRAIVRDIT-GGRGADV 252 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCCeEEcCcccccHHHHHHHHHHh-CCCCCcE
Confidence 34889999 76653 4444555555334 89999999998887754 3321222111 11111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..++.+..+.|+++|++++.
T Consensus 253 vid~~g~------~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 253 VIEASGH------PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred EEECCCC------hHHHHHHHHHhccCCEEEEE
Confidence 9855322 34677888999999999874
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.24 Score=46.70 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=61.5
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCC-CCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYV-PDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~L-Pf~~~sF 178 (274)
.+...+.++++|| .|+|+ |.++..+++... .+|+++|.+++-++.+++ +.--.++... .+.+ ......+
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCcEeccccccchHHHHHHHHhCCCC
Confidence 3446788999999 87764 455555655533 479999999999998865 3221121110 0001 0112468
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
|+|+-+.+- ..++.+..+.|+|| |++++.
T Consensus 256 d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 256 DYSFECTGN------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CEEEECCCC------hHHHHHHHHhcccCCCEEEEE
Confidence 999854331 25678888899986 999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.21 Score=47.09 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=61.9
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----c----cCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----L----IYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----a----e~LPf~~~ 176 (274)
.+..++.++++|| .|+|. |.++..+++... .+|+++|.+++-++.+++ +....++.-+ . .++ ..+
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~Ga~~~i~~~~~~~~~~~~v~~~--~~~ 256 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-FGVTEFVNPKDHDKPVQEVIAEM--TGG 256 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEEcccccchhHHHHHHHH--hCC
Confidence 3446788999999 87654 455555665533 479999999999999865 4422222111 0 112 123
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
.+|+|+-..+- ..++....+.+++| |++++.
T Consensus 257 ~~d~vid~~G~------~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 257 GVDYSFECTGN------IDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCCEEEECCCC------hHHHHHHHHHhhcCCCEEEEE
Confidence 68988854321 35677778889996 999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.19 Score=46.32 Aligned_cols=99 Identities=17% Similarity=0.075 Sum_probs=61.4
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh--CCCcEEEEeCcHHHHHHHHHhCCCceEE---Eeec-cCCCCCCCCcc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES--SPSLLLVVHDSLFVLAGIKEKYDTVKCW---QGEL-IYVPDKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~--~~~~V~gVD~S~~ML~~Ar~k~~~v~~~---~gDa-e~LPf~~~sFD 179 (274)
++...++.++++|| .|+|. |.++..+++. +...++++|-+++-++.+++---+ .++ ..+. +.++.....+|
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-WVINNAQEPLGEALEEKGIKPT 230 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHhcCCCCCC
Confidence 44556788999999 88764 4445555553 435699999999988888753211 111 1111 11221222356
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+ . ..++.+..+.|++||+++..
T Consensus 231 ~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 231 LIIDAAC-----H-PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCEEEEE
Confidence 7775433 1 34788889999999999873
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.19 Score=46.53 Aligned_cols=98 Identities=10% Similarity=0.086 Sum_probs=61.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-CCCCCCccEEEecc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-PDKWGPLDVVFLYF 185 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-Pf~~~sFD~V~~~f 185 (274)
+..+.+.++++|| .|||. |.++..+++....+|++++.+++.++.+++ +..-.++...-... ....+.+|+|+...
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCcEEecCcchhhhhhccCCceEEEECC
Confidence 3445678899999 77643 444555555433589999999999988864 43212221111111 11146799998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-. ..+.++.+.|+++|+++..
T Consensus 241 g~~------~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SAS------HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCc------chHHHHHHHhcCCCEEEEE
Confidence 321 2467778889999999874
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.28 Score=45.65 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=62.2
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEE---eec----cCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL----IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa----e~LPf~~~sF 178 (274)
+....+.++++|| .|+|. |.++..+++.... +|++++-+++.++.+++ +..-.++. .+. .++ .....+
T Consensus 165 l~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~ga~~~i~~~~~~~~~~l~~~-~~~~~~ 242 (351)
T cd08233 165 VRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-LGATIVLDPTEVDVVAEVRKL-TGGGGV 242 (351)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCCEEECCCccCHHHHHHHH-hCCCCC
Confidence 3556788899999 87643 4455555555333 79999999999988865 33211221 111 111 122459
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. ...++++.+.|++||+++..
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEE
Confidence 999865432 24678888999999999873
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.2 Score=48.65 Aligned_cols=105 Identities=13% Similarity=0.056 Sum_probs=67.8
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC-C----CcEEEEeCcHHHHHH---HHHhCCC--ceEEEeeccCCC-------
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESS-P----SLLLVVHDSLFVLAG---IKEKYDT--VKCWQGELIYVP------- 172 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~----~~V~gVD~S~~ML~~---Ar~k~~~--v~~~~gDae~LP------- 172 (274)
.+++++|++|| +|+-.|.=+..|.+.. + +.|++-|.+..-+.. .-++.+. +.....|+...|
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 35889999999 9999997777776642 1 389999999874444 3344443 333444444444
Q ss_pred --CCCCCccEEEec-----c-cCcCCC----------------CHH-HHHHHHHHhcCCCCEEEEEcC
Q 023974 173 --DKWGPLDVVFLY-----F-LPAMPF----------------PLD-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 --f~~~sFD~V~~~-----f-~l~~~~----------------d~~-~al~el~RvLKPGGrlvIs~~ 215 (274)
.+-..||-|.|- - +++.-. .++ +.++.-.|.||+||++|-++.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 233568888732 1 122111 111 567778899999999999754
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.29 Score=49.16 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-CCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeec
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-PSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGEL 168 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDa 168 (274)
.+...+-+++.+.+.+..+|. -+||||.+.....+. . ...+.|.+..+.+.+.|+-+. . ++....+|.
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 344556667777777888999 999999875544332 1 256999999999999999762 2 244555655
Q ss_pred cCCCC-----CCCCccEEEec--cc-CcCCC---------------------CH-HHHHHHHHHhcCCCCEEEEE
Q 023974 169 IYVPD-----KWGPLDVVFLY--FL-PAMPF---------------------PL-DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 169 e~LPf-----~~~sFD~V~~~--f~-l~~~~---------------------d~-~~al~el~RvLKPGGrlvIs 213 (274)
-.=|- ..+.||.|+++ |. -.|.. .- ...++.+...|+|||+..|-
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 44332 34779999987 43 11211 11 46788999999999988874
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.29 Score=45.32 Aligned_cols=97 Identities=7% Similarity=0.021 Sum_probs=61.1
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEec
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLY 184 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~ 184 (274)
..+.+.++++|| .|||. |..+..+++....+|++++.+++-++.+++ +..-.++...-+++. -....+|+|+..
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 445788899999 88654 444555555433579999999999998854 442222221111110 011358998854
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- ...+.++.+.|++||+++..
T Consensus 236 ~g~------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 236 APN------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCc------hHHHHHHHHHcccCCEEEEE
Confidence 321 35788888999999999873
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.13 Score=49.28 Aligned_cols=92 Identities=8% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHH-HHHHHHhCCCceEEEe-eccCCCCCCCCccEEEecccCcCC
Q 023974 115 DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFV-LAGIKEKYDTVKCWQG-ELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~M-L~~Ar~k~~~v~~~~g-Dae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
.++++|| .|+|. |.++..+++....+|+++|.+.+- ++.++ ++.--.++.. +.+.+......+|+|+-..+-
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~-~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~--- 252 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID-RLGADSFLVTTDSQKMKEAVGTMDFIIDTVSA--- 252 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH-hCCCcEEEcCcCHHHHHHhhCCCcEEEECCCc---
Confidence 5789999 88865 555566666533579999988655 44553 3332112211 111111111258998865331
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
..++.+..+.|++||+++..
T Consensus 253 ---~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 253 ---EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred ---HHHHHHHHHhhcCCCEEEEE
Confidence 34678888899999999873
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.13 Score=40.81 Aligned_cols=116 Identities=14% Similarity=-0.030 Sum_probs=70.3
Q ss_pred CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----CC-C-CCCCCccEEEecccCcCCCCHHHHHH
Q 023974 125 SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----YV-P-DKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 125 GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----~L-P-f~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
|.|.++..+++....+|+++|.+++=++.+++-. .-.++..+-. ++ . ..+..+|+|+-+.+- ...++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G-a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------~~~~~ 73 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG-ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------GDTLQ 73 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------HHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc-ccccccccccccccccccccccccceEEEEecCc------HHHHH
Confidence 4677888887763379999999999999998743 2222221111 11 1 223589999976542 57899
Q ss_pred HHHHhcCCCCEEEEEcCCC--hh--HHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 199 TLANRCSPGARVVISHPQG--RE--ALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 199 el~RvLKPGGrlvIs~~~g--r~--~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
+....|+|||++++.-..+ .. ....+...-..+......+.++..+.++
T Consensus 74 ~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 126 (130)
T PF00107_consen 74 EAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQ 126 (130)
T ss_dssp HHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence 9999999999999953222 10 1122222222223344555677777665
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.41 Score=44.13 Aligned_cols=96 Identities=14% Similarity=0.055 Sum_probs=62.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~ 180 (274)
....+.++.+|| .|+|+ |.++..+++....+ |++++-++++.+.+++ +....++..+ +..+. ....+|+
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~d~ 230 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-LGADDTINPKEEDVEKVRELT-EGRGADL 230 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCCCEEecCccccHHHHHHHh-CCCCCCE
Confidence 356778899999 88765 66666666654344 9999999999888754 3322222211 11121 2245999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+ ....+.++.+.|+++|+++..
T Consensus 231 vld~~g------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC------CHHHHHHHHHHhhcCCEEEEE
Confidence 985521 245788889999999999874
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.092 Score=47.22 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHH---HHh-CC-CcEEEEeCcHHHHHHHHHhC----CCceEEEeec
Q 023974 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRV---VES-SP-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGEL 168 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L---~~~-~~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDa 168 (274)
+++.....+++-.+ +| +.|+ +|.=.|--+..+ .+. ++ ++|+|||+...-........ +.+++++||.
T Consensus 18 P~Dm~~~qeli~~~--kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 18 PQDMVAYQELIWEL--KP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp HHHHHHHHHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred HHHHHHHHHHHHHh--CC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 34555566676554 34 5788 888665333322 333 34 89999999765554433332 6799999998
Q ss_pred cCCC------CCCCCccE-EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 169 IYVP------DKWGPLDV-VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 169 e~LP------f~~~sFD~-V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+.- ......+- +++--+-|.-...-+.|+-.+..++||+.+||.+.
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 6532 11112232 23334555555677888889999999999999654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.072 Score=51.50 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
++.+|+ +|+|. |..+...+.....+|+++|.+++-++.+.+++.. +.....+.+++...-..+|+|+.+..+.-...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~ 245 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA 245 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence 345799 98884 5555555444224899999999888777776653 21111222223222246899997642211112
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023974 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
+.-+-+++.+.+|||+.++-
T Consensus 246 p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 246 PKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CcCcCHHHHhcCCCCCEEEE
Confidence 22234666677899988764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.31 Score=45.98 Aligned_cols=97 Identities=10% Similarity=-0.023 Sum_probs=61.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~V 181 (274)
....+.++++|| .|+|. |.++..+++... ..|+++|.+++.++.+++ +..-.++..+-+. +- .....+|+|
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~-~g~~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGATHVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCcEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 345678899999 77654 555555655533 469999999999988865 3221222211111 10 113569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ...+.++.+.|+++|+++..
T Consensus 259 ld~~g~------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 259 LDTTGV------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred EECCCC------cHHHHHHHHHhccCCEEEEe
Confidence 865332 24678889999999999874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.38 Score=45.41 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=60.8
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE---e--e----ccCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ---G--E----LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~---g--D----ae~LPf~~~ 176 (274)
.....+.++++|| .|+|. |.++..+++... ..|+++|.+++-++.+++ +.-..++. . + +.++. ++
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~l~~~~--~~ 252 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATECINPRDQDKPIVEVLTEMT--DG 252 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCeecccccccchHHHHHHHHh--CC
Confidence 3456788999999 76643 444444555433 458999999998888854 43222221 1 1 11121 35
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcC-CCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCS-PGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLK-PGGrlvIs 213 (274)
.+|+|+-..+- ..++.+..+.|+ +||++++.
T Consensus 253 ~~d~vid~~g~------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 253 GVDYAFEVIGS------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CCcEEEECCCC------HHHHHHHHHHhccCCCEEEEE
Confidence 69999865331 356778888999 99999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.49 Score=44.46 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=59.2
Q ss_pred hCCCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeeccCC------CCCCCCccEE
Q 023974 111 AGEIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELIYV------PDKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L------Pf~~~sFD~V 181 (274)
...+.++++|| .|+| .|.++..+++..... |++++-+++..+.+++ +.-..++..+-..+ ...+..+|+|
T Consensus 182 ~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g~~~v~~~~~~~~~~~l~~~~~~~~~d~v 260 (367)
T cd08263 182 AADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LGATHTVNAAKEDAVAAIREITGGRGVDVV 260 (367)
T ss_pred cccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCceEecCCcccHHHHHHHHhCCCCCCEE
Confidence 34567889999 7554 244455555543334 9999999998888754 33222222211111 0124569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+...+- ...+.++.+.|+++|+++..
T Consensus 261 ld~vg~------~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 261 VEALGK------PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEeCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 865321 13678888999999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.033 Score=48.62 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=59.5
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHH-HHHHhCCCc---eEEEeeccCCCCCCCCccEEEecccCcC--
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLA-GIKEKYDTV---KCWQGELIYVPDKWGPLDVVFLYFLPAM-- 189 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~-~Ar~k~~~v---~~~~gDae~LPf~~~sFD~V~~~f~l~~-- 189 (274)
+.+++ +|...=.+-......+.++|+-|+..+--++ ..+.+...+ +|. .++ -...++||.+.|...+-+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~-~~~---~~y~~~fD~~as~~siEh~G 77 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA-KNW---QKYAGSFDFAASFSSIEHFG 77 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH-HHH---HHhhccchhhheechhcccc
Confidence 56788 8888766554444555578999987753221 222232211 111 111 123477999876543322
Q ss_pred ------CCCH---HHHHHHHHHhcCCCCEEEEEcCCChh
Q 023974 190 ------PFPL---DQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 190 ------~~d~---~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
+-|| .+++.++.++|||||+|+++-|.|..
T Consensus 78 LGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 78 LGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 1122 26788899999999999998887653
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.48 Score=44.50 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=62.2
Q ss_pred HHhCCCCCCCeEE-EEcC-chHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSIS-SEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sF 178 (274)
.....+.++++|| .|+| .|..+..+++.... .|++++-+++..+.+++ +.-..++..+- ..+. ....+
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~~~vv~~~~~~~~~~l~~~~-~~~~v 252 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGATHTVNASEDDAVEAVRDLT-DGRGA 252 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCCeEEeCCCCccHHHHHHHHc-CCCCC
Confidence 3446778899999 8765 25555566655433 59999999998887753 33212222111 1111 24569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ..++.++.+.|++||+++..
T Consensus 253 d~vld~~~~------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 253 DYAFEAVGR------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CEEEEcCCC------hHHHHHHHHHhhcCCeEEEE
Confidence 988854321 35678889999999999874
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.48 Score=45.08 Aligned_cols=95 Identities=9% Similarity=-0.037 Sum_probs=59.0
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEe------e----ccCCCCCCCCc
Q 023974 112 GEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQG------E----LIYVPDKWGPL 178 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~g------D----ae~LPf~~~sF 178 (274)
..+.++++|| .|+|. |..+..+++.... .|+++|.+++-++.+++- .--.++.. + +.++. ....+
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~~~~v~~~~~~~~~~~~~v~~~~-~g~gv 276 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GADYVFNPTKMRDCLSGEKVMEVT-KGWGA 276 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCCEEEcccccccccHHHHHHHhc-CCCCC
Confidence 4778999999 76543 3333344444333 799999999877777663 21111111 0 11222 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+...+ +...++.++.+.|+++|+++..
T Consensus 277 Dvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 277 DIQVEAAG-----APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CEEEECCC-----CcHHHHHHHHHHHHcCCEEEEE
Confidence 99886533 2346788889999999999863
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.8 Score=42.66 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=59.9
Q ss_pred HHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 105 IDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
+..+++..++ -.|.+|+ +|+|. |......++....+|+++|.++.-...|+.. ..... +.++. -...|+|
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~--G~~v~--~leea---l~~aDVV 254 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD--GFRVM--TMEEA---AKIGDIF 254 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc--CCEeC--CHHHH---HhcCCEE
Confidence 3455555443 5788999 99998 6666655554336899999988765555432 22221 22221 1346998
Q ss_pred EecccCcCCCCHHHHHH-HHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+..-+ . ..++. +....+|||++++..
T Consensus 255 ItaTG-----~-~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 255 ITATG-----N-KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EECCC-----C-HHHHHHHHHhcCCCCcEEEEE
Confidence 87532 2 34454 588899999999875
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.53 Score=43.23 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccCCCCCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~LPf~~~sFD~ 180 (274)
+....+.++++|| .|+|. |..+..+++. ...+|++++-+++-++.+++ +.--.++... .+.+-...+.+|.
T Consensus 155 ~~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADLTINSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcEEecccccccHHHHHHHhcCCCcE
Confidence 3556788999999 88654 5556666664 23689999999999999954 4321222211 0111101124785
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+.... . ...+.+..+.|++||+++..
T Consensus 234 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 234 AVVTAV-----A-KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEEeCC-----C-HHHHHHHHHhccCCCEEEEE
Confidence 543321 1 35688889999999999873
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.051 Score=47.72 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHH-HHHhCC-CcEEEEeCcHHHHHHHHHhC-CC-------c---eEE-EeeccCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDR-VVESSP-SLLLVVHDSLFVLAGIKEKY-DT-------V---KCW-QGELIYV 171 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~-L~~~~~-~~V~gVD~S~~ML~~Ar~k~-~~-------v---~~~-~gDae~L 171 (274)
.+++..+.-.|.+|| +|.|---++-. ++...+ ..|.--|-.++-++-.++-. .+ + ++. .++- .
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq--s 97 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ--S 97 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH--H
Confidence 344444444567899 99985444444 444445 78888898888776655421 11 1 111 1221 2
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
..+.+.||.|+++-.+-+-+-.+...+-+.+.|+|-|+-++..|.....++++
T Consensus 98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF 150 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKF 150 (201)
T ss_pred HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHH
Confidence 33567999999995543433445667788999999999988877644455544
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.13 Score=48.86 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=56.8
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC-----C
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP-----D 173 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP-----f 173 (274)
++.+++.+.+.++...+ .--|.|--+..+++..+ ++|+|+|-.+++++.|+++.. ++.++.++..+++ .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHT
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHc
Confidence 56788888889988889 77788878888888755 999999999999999998853 5788888877755 2
Q ss_pred -CCCCccEEEec
Q 023974 174 -KWGPLDVVFLY 184 (274)
Q Consensus 174 -~~~sFD~V~~~ 184 (274)
....+|.|++=
T Consensus 89 ~~~~~~dgiL~D 100 (310)
T PF01795_consen 89 NGINKVDGILFD 100 (310)
T ss_dssp TTTS-EEEEEEE
T ss_pred cCCCccCEEEEc
Confidence 34688998854
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.3 Score=45.63 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023974 117 SSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
..+|+ +|||. |.......+.....++.+|.+++.++.+++ .+.+.+.||+.+.. ..-+..|+|++.. .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~d- 474 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI--DD- 474 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--CC-
Confidence 35788 99997 655444333322489999999999999976 35778999998854 2235788888753 22
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.....-+..|.+.|.-+++..
T Consensus 475 ~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 475 PQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEE
Confidence 12234445667778888887763
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.79 Score=42.37 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---e----ccCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---E----LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D----ae~LPf~~~sF 178 (274)
.....+.++++|| .|+|. |..+..+++... .+|+++|.+++.++.+++ +.--.++.. + +.++. .+..+
T Consensus 159 ~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~i~~~~-~~~~~ 236 (345)
T cd08286 159 VLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK-LGATHTVNSAKGDAIEQVLELT-DGRGV 236 (345)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCCceeccccccHHHHHHHHh-CCCCC
Confidence 3445678899999 66533 334444555433 579999999988887765 321111211 1 11121 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+ . ...+..+.+.|+++|+++..
T Consensus 237 d~vld~~g-----~-~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAVG-----I-PATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECCC-----C-HHHHHHHHHhccCCcEEEEe
Confidence 99986532 2 34678888999999999863
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.6 Score=43.87 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 115 DESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
-++.+|+ +|+|. |..+.. |...+...|+.+|.+++-.+...++++. ..+ +.+++...-...|+|+.+-....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~--~~~~~~~~l~~aDvVi~at~~~~-- 250 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAV--PLDELLELLNEADVVISATGAPH-- 250 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEE--eHHHHHHHHhcCCEEEECCCCCc--
Confidence 4678999 98876 443333 3332436899999998876655565653 222 22222222245799998744322
Q ss_pred CHHHHHHHHHHhcCCCCEEEE
Q 023974 192 PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvI 212 (274)
+...+.++.+..+.+|+++|
T Consensus 251 -~~~~~~~~~~~~~~~~~~vi 270 (311)
T cd05213 251 -YAKIVERAMKKRSGKPRLIV 270 (311)
T ss_pred -hHHHHHHHHhhCCCCCeEEE
Confidence 23444444433433567776
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=1 Score=44.63 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=55.7
Q ss_pred CCC-CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 113 EID-ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 113 ~~~-~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
++. .|.+|+ +|+|. |..+...++....+|+.+|.++.-...|... ..... +.+++ -...|+|+..-+
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--G~~v~--~l~ea---l~~aDVVI~aTG--- 276 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--GFRVM--TMEEA---AELGDIFVTATG--- 276 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--CCEec--CHHHH---HhCCCEEEECCC---
Confidence 443 788999 99997 5555444443225899999998766555442 22221 22222 136899987532
Q ss_pred CCCHHHHHH-HHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFE-TLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~-el~RvLKPGGrlvIs 213 (274)
+ ..++. +..+.+|+|+.++..
T Consensus 277 --~-~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 277 --N-KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred --C-HHHHHHHHHhcCCCCCEEEEc
Confidence 2 33554 788899999988773
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.31 Score=47.54 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=62.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCC-----ceE----EEeeccCCCCCCCCccE
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDT-----VKC----WQGELIYVPDKWGPLDV 180 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~-----v~~----~~gDae~LPf~~~sFD~ 180 (274)
++.+ .++| ||.|.|.-+-++...-| ..++-+..|+..-++.-.-..+ ..+ ++-|-..||. ...+++
T Consensus 111 dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~-ad~ytl 188 (484)
T COG5459 111 DFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA-ADLYTL 188 (484)
T ss_pred CcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc-cceeeh
Confidence 3444 4699 99999976666655445 6788888888776664432211 122 2333334553 355666
Q ss_pred EEecccCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 181 VFLYFLPAMP---FPLDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 181 V~~~f~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
|+..--+-.. .....-++.+...+.|||.|||.++...
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 6654322221 1223467888999999999999765443
|
|
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.77 Score=42.43 Aligned_cols=97 Identities=10% Similarity=-0.087 Sum_probs=61.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-cCCC-----CCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-IYVP-----DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-e~LP-----f~~~sFD~V 181 (274)
....+.++++|| .|+|. |.++..+++....+|++++-+++..+.+++ +.--.++...- .+++ ...+.+|+|
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-LGAVATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-hCCCEEEccccchhHHHHHHHHhCCCCCEE
Confidence 345678889999 88653 455555555433689999999999888854 43222222111 1111 112279999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+...+- ...+.+..+.|+++|+++..
T Consensus 238 i~~~g~------~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 238 VDALGI------PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred EEcCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 865321 35677889999999999863
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.16 Score=46.82 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=64.7
Q ss_pred CeEE-EEcCchHHHHHHHHh--C--C------CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCCc
Q 023974 118 SKVL-VSISSEEFVDRVVES--S--P------SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGPL 178 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~--~--~------~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~sF 178 (274)
.||+ +|.-.|.-...|.++ . + ..|++||+-+ | .-.+++..+|||++... |..+.-
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-----aPI~GV~qlq~DIT~~stae~Ii~hfggekA 116 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-----APIEGVIQLQGDITSASTAEAIIEHFGGEKA 116 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-----CccCceEEeecccCCHhHHHHHHHHhCCCCc
Confidence 5899 999999887777654 1 1 1299999854 3 23568899999998754 667899
Q ss_pred cEEEeccc-----CcCCCC------HHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFL-----PAMPFP------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~-----l~~~~d------~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+|--. +|-+.+ +-.||.-..+||||||.||--
T Consensus 117 dlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 117 DLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred cEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99998733 443321 124666778999999999863
|
|
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.4 Score=41.37 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=60.7
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEE-E---eeccC----CC-CCCCC
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCW-Q---GELIY----VP-DKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~-~---gDae~----LP-f~~~s 177 (274)
....+.++++|| .|+|. |.++..+++... ..|+++|.+++-++.+++-.-..... . .+..+ +. .....
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGG 254 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCC
Confidence 456788899999 87653 455555555433 46899999998888776532111111 0 11110 10 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-..+- ..++.++.+.|+++|+++..
T Consensus 255 ~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 255 IDVSFDCVGF------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred CCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 8998864221 24788889999999999864
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=48.48 Aligned_cols=104 Identities=11% Similarity=0.039 Sum_probs=70.7
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC---CCCCCc
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP---DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP---f~~~sF 178 (274)
..+..++|.||| +|+-.|-=+-+++.. .. +.|+|.|-+..-+...++.. .+......|..++| +. ++|
T Consensus 235 ~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 235 MALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred eecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC-ccc
Confidence 346789999999 998887444444443 22 79999999999888877653 34566778887777 33 389
Q ss_pred cEEE----ecc-cCcC-------CCC----------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 179 DVVF----LYF-LPAM-------PFP----------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~----~~f-~l~~-------~~d----------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|-|. |+- ++.+ ..+ .++.|-.....+||||.||-++
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 9997 221 1111 100 1345556678899999999864
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.4 Score=45.22 Aligned_cols=103 Identities=11% Similarity=0.193 Sum_probs=64.4
Q ss_pred CeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023974 118 SKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 118 ~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
.+|+ +|+|. |..... |.+.+ ..++++|.+++-++.+++ .+...+.||+.+.. ..-+..|+|++.. .+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g-~~vvvID~d~~~v~~~~~--~g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~d~ 475 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK-MRITVLERDISAVNLMRK--YGYKVYYGDATQLELLRAAGAEKAEAIVITC--NEP 475 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHh--CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe--CCH
Confidence 4677 77776 443332 33333 589999999999999876 35778899998743 2235788887652 221
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 191 FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
+-....-...|.+.|..+++.. ..++...+.+++.
T Consensus 476 -~~n~~i~~~~r~~~p~~~IiaR-a~~~~~~~~L~~~ 510 (601)
T PRK03659 476 -EDTMKIVELCQQHFPHLHILAR-ARGRVEAHELLQA 510 (601)
T ss_pred -HHHHHHHHHHHHHCCCCeEEEE-eCCHHHHHHHHhC
Confidence 2223444567778899898874 2333333444433
|
|
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.2 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=58.7
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~ 180 (274)
+....+.++++|| .|+ +.|..+..+++....++++++-+. .++.+++ +. +.++.-..+. .. .....+|+
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~d~ 246 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA-LG-ADTVILRDAPLLADAKALGGEPVDV 246 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh-cC-CeEEEeCCCccHHHHHhhCCCCCcE
Confidence 4456788999999 887 235555555554335788988665 7777754 33 2222111000 00 12356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.++.+.|+++|+++.
T Consensus 247 vi~~~g-------~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 247 VADVVG-------GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred EEecCC-------HHHHHHHHHHhccCCEEEE
Confidence 986543 1367788899999999985
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.8 Score=41.53 Aligned_cols=94 Identities=11% Similarity=0.039 Sum_probs=61.8
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe---e-c-cCC--CCCCCCccEE
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG---E-L-IYV--PDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D-a-e~L--Pf~~~sFD~V 181 (274)
..+.++++|| .|+ +.|..+..+++.....++.++-+++..+.+++ +.--.++.. | . +.+ ......+|++
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAAIILIRYPDEEGFAPKVKKLTGEKGVNLV 214 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEecCChhHHHHHHHHHhCCCCceEE
Confidence 5678899999 874 45777777766543567779999999999854 542222211 1 0 000 0123569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+ ...+.++.+.|+++|+++..
T Consensus 215 i~~~~-------~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 215 LDCVG-------GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred EECCc-------hHHHHHHHHHhccCCeEEEE
Confidence 86543 25778888999999999873
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.65 Score=40.30 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LP----------f~~~s 177 (274)
.+.+|| .|++. .++.. |++.+ .+|++++-+++=++.+.+. ..++.++++|+.+-. ..-+.
T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356888 77754 34333 33444 5899999998766555332 235778888876532 01245
Q ss_pred ccEEEecccCcCCC---C--------------HHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPF---P--------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~---d--------------~~~al~el~RvLKPGGrlvIs 213 (274)
+|.++.+.+..... + +-.+++.+.+.+++||++++.
T Consensus 82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 79998775432211 1 112345556667789988874
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.7 Score=40.90 Aligned_cols=69 Identities=12% Similarity=-0.088 Sum_probs=47.1
Q ss_pred eEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCC-----CC------CCCccEE
Q 023974 119 KVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVP-----DK------WGPLDVV 181 (274)
Q Consensus 119 rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LP-----f~------~~sFD~V 181 (274)
+|| .|+++| .++..|++++ .+|+++|-+++-++...+..+ ++.++++|+.+.. +. .+.+|+|
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v 81 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL 81 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence 577 665543 2344455555 589999999988887776654 5788899987632 00 4678999
Q ss_pred EecccCc
Q 023974 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 82 i~~ag~~ 88 (260)
T PRK08267 82 FNNAGIL 88 (260)
T ss_pred EECCCCC
Confidence 9886653
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.13 Score=42.60 Aligned_cols=85 Identities=19% Similarity=0.303 Sum_probs=53.7
Q ss_pred ceEEEeeccC-CCCCCCCccEEEec-ccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccC
Q 023974 161 VKCWQGELIY-VPDKWGPLDVVFLY-FLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDL 236 (274)
Q Consensus 161 v~~~~gDae~-LPf~~~sFD~V~~~-f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~f 236 (274)
++++.||+.+ |+.-+..||+|+.- |.+.-.++. .+.+++++|.++|||.++-...
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~--------------------- 91 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS--------------------- 91 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec---------------------
Confidence 4678899966 56556899999976 666432221 4899999999999998875211
Q ss_pred CCHHHHHHHHHhCCCcEeEEEec-CCeEEEEEE
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDE-SGFYLVVLK 268 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~-~~~yl~v~~ 268 (274)
...+++.|.++||.+....-. ...-+++..
T Consensus 92 --a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 92 --AGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred --hHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 135778899999987766542 222344443
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.1 Score=41.45 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeec----cCCC-CCCCCccEEEecc
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGEL----IYVP-DKWGPLDVVFLYF 185 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa----e~LP-f~~~sFD~V~~~f 185 (274)
..++++|| .|+|+ |.++..+++... ..|++++.+++-++.+++ +.-..++..+- +.+. ...+.+|+|+-..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCcEEecCCCccHHHHHHHHhCCCCcEEEECC
Confidence 34788999 76553 444555555433 479999999998888854 43212221110 0111 1112689998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+. ...+.++.+.|+++|+++..
T Consensus 252 g~------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 252 NN------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred CC------HHHHHHHHHHhhcCCeEEEE
Confidence 32 34688889999999999874
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.94 Score=41.61 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=53.0
Q ss_pred CCCeEE-E--EcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEecc
Q 023974 116 ESSKVL-V--SISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-v--GcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~f 185 (274)
++.++| + |+|+ |.++..+++....+|++++.+++-++.+++ +..-.++..+-+++. .....+|+|+-+.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~ 220 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-IGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAV 220 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEECCCccHHHHHHHHhCCCCCcEEEECC
Confidence 455677 6 3332 444555555433589999999999888876 332222221111111 1224689998654
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+- .......+.|++||++++.
T Consensus 221 g~-------~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 221 GG-------GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred Cc-------HHHHHHHHhhCCCCEEEEE
Confidence 41 2345567789999999873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.1 Score=40.78 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=61.7
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccE
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~ 180 (274)
...+.++++|| .|. +.|..+..+++....+|++++-++...+.+++.+.--.++..+ +.++- .+.+|+
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~ 217 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDV 217 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceE
Confidence 34677889999 874 3466666666653368999999998888887644422222211 11121 256999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+-+.+ ...+.+..+.|+++|+++.
T Consensus 218 vi~~~g-------~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 218 YFDNVG-------GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred EEEcch-------HHHHHHHHHhcCCCceEEE
Confidence 886533 1367888899999999986
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.3 Score=40.73 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=61.7
Q ss_pred HHhCCCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++++|| .|+| .|.++..+++....+ |++++-+++..+.+++ +..-.++..+ +.++. .+..+
T Consensus 158 l~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~-~g~~~~~~~~~~~~~~~i~~~~-~~~~v 235 (343)
T cd08235 158 QRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK-LGADYTIDAAEEDLVEKVRELT-DGRGA 235 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCCcEEecCCccCHHHHHHHHh-CCcCC
Confidence 3445788999999 8765 355555565553346 9999999998888753 3321222211 11111 23458
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ...+.++.+.|+++|+++..
T Consensus 236 d~vld~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 236 DVVIVATGS------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CEEEECCCC------hHHHHHHHHHhhcCCEEEEE
Confidence 999864331 35778888999999999873
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.98 Score=41.81 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=57.2
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEe
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~ 183 (274)
...++++|| .|+|+ |.++..+++.... .|++++-+++=.+.+++ +.--.++..+ +.++. ..+.+|+|+-
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~vd~vld 237 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK-MGADVVINPREEDVVEVKSVT-DGTGVDVVLE 237 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCcceeeCcccccHHHHHHHc-CCCCCCEEEE
Confidence 346788999 66654 5555566665434 68888888776666654 3211111111 11111 2357999986
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+- ..+..++.+.|++||++++.
T Consensus 238 ~~g~------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 238 MSGN------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCC------HHHHHHHHHHhccCCEEEEE
Confidence 5321 35678888999999999874
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=92.90 E-value=1.7 Score=38.41 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=55.6
Q ss_pred CCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--CCCCCccEEEecccC
Q 023974 113 EIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--DKWGPLDVVFLYFLP 187 (274)
Q Consensus 113 ~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l 187 (274)
.+.++++|| .|+ | .|..+..+++....+|+.++.+. ..+.+++ +.--.++...-.+.. .....+|+|+...+-
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~ 218 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGADEVIDYTKGDFERAAAPGGVDAVLDTVGG 218 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCCCEEEeCCCCchhhccCCCCceEEEECCch
Confidence 477889999 886 2 35555555554335788888777 6777643 331222221111111 233568988854221
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
....++.+.|+++|+++..
T Consensus 219 -------~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 219 -------ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred -------HHHHHHHHHHhcCcEEEEE
Confidence 2677788899999999864
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.68 E-value=1.7 Score=38.89 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=60.7
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----C-CCCCCCccEEEe
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----V-PDKWGPLDVVFL 183 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----L-Pf~~~sFD~V~~ 183 (274)
..+.++++|| .|+ +.|..+..+++....+|++++.+++-.+.+++ +. +..+..+-.. + .. ...+|+|+-
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~i~~~-~~~~d~vl~ 214 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE-LG-ADEVVIDDGAIAEQLRAA-PGGFDKVLE 214 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC-CcEEEecCccHHHHHHHh-CCCceEEEE
Confidence 4578889999 886 34666666766543689999999988888854 33 2222111111 1 11 457999985
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+ ...+.++.+.|+++|+++..
T Consensus 215 ~~~-------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 215 LVG-------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCC-------hHHHHHHHHHhccCCEEEEE
Confidence 432 24678888999999999863
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.25 Score=48.24 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k 157 (274)
++.+++.++++|| |+.|......+| ..+|.+|++||+++.-++..+=|
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL-~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYL-LAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHH-hcCCceEEEEeCCHHHHHHHHHH
Confidence 3457899999999 877766666665 45678999999999988776655
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.4 Score=40.77 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=57.8
Q ss_pred CCCCCCeEE-EEcC-chHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEeecc-------CCCCCCCCccEEE
Q 023974 113 EIDESSKVL-VSIS-SEEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGELI-------YVPDKWGPLDVVF 182 (274)
Q Consensus 113 ~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-------~LPf~~~sFD~V~ 182 (274)
...++.+|| .|+| .|..+..+++....+ |++++-+++-.+.+++... -.++..+.. ++. ..+.+|+|+
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-~~~v~~~~~~~~~~l~~~~-~~~~~d~vl 235 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-TYVVNPFKEDVVKEVADLT-DGEGVDVFL 235 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-cEEEcccccCHHHHHHHhc-CCCCCCEEE
Confidence 356788999 6654 244555555543344 8999989888887765322 112211111 111 235699998
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-+.+- ..++.++.+.|+++|+++..
T Consensus 236 d~~g~------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 236 EMSGA------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred ECCCC------HHHHHHHHHhhcCCCEEEEE
Confidence 65321 35788899999999999874
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.3 Score=39.26 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=59.9
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCccE
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sFD~ 180 (274)
...+.++++|| .|+ +.|..+..+++.....|++++.+++..+.+++ +.--.++..+- ..+. ....+|+
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 208 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-AGADHVINYRDEDFVERVREIT-GGRGVDV 208 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-CCCCEEEeCCchhHHHHHHHHc-CCCCeeE
Confidence 45677899999 884 34666666666533689999999999988854 43212222111 1111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+.+.+- ..+.+..+.|+++|+++.
T Consensus 209 vl~~~~~-------~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 209 VYDGVGK-------DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred EEECCCc-------HhHHHHHHhhccCcEEEE
Confidence 9864331 356677788999999985
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.53 Score=44.62 Aligned_cols=157 Identities=8% Similarity=0.026 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhCCCC--CCCeEE-EEcCchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhC---C----CceEEEee-
Q 023974 100 EHIQRIDQIISAGEID--ESSKVL-VSISSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKY---D----TVKCWQGE- 167 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~--~~~rVL-vGcGTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~---~----~v~~~~gD- 167 (274)
....|+.+++...... ..-++| ||||.-.+-+.|..+. .-+++|.|+++.-++.|++.. + .+++++-.
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 4446899988765332 245788 9999988877776542 379999999999999999752 2 35665322
Q ss_pred ccC----CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhc----CC-----CCEEEEEcC-------CCh-hHHHHH--
Q 023974 168 LIY----VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRC----SP-----GARVVISHP-------QGR-EALQKQ-- 224 (274)
Q Consensus 168 ae~----LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvL----KP-----GGrlvIs~~-------~gr-~~l~~~-- 224 (274)
-.. +-..++.||..+|+=-+ ..+.+++.....|-. +| .....++-. .|. ..+.++
T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPF--y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ 241 (299)
T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPF--YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIK 241 (299)
T ss_dssp T-SSTTTSTT--S-EEEEEE-------SS--------------------------------TTTTHHHHTHHHHHHHHHH
T ss_pred ccccchhhhcccceeeEEecCCcc--ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHH
Confidence 111 22345789999998211 123444444333333 11 223333210 010 112221
Q ss_pred -HhhCc------ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 225 -RKQFP------DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 225 -~~~~~------~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
...+. ..-+...-+-..|.+.+++.|-..+...+
T Consensus 242 ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 242 ESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp HHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEE
Confidence 11111 11234556678899999999876555444
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.47 Score=41.76 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCC-----C-----C
Q 023974 113 EIDESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPD-----K-----W 175 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf-----~-----~ 175 (274)
..-++.+|| .|++ |.++..+ ++++ .+|++++-+++.++...+..++ +.++.+|+.+... + -
T Consensus 7 ~~~~~~~vlItGa~-g~iG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (264)
T PRK12829 7 KPLDGLRVLVTGGA-SGIGRAIAEAFAEAG-ARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERF 84 (264)
T ss_pred hccCCCEEEEeCCC-CcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 334667889 6654 5455444 4444 5899999999888776665543 4778888765331 1 1
Q ss_pred CCccEEEecccC
Q 023974 176 GPLDVVFLYFLP 187 (274)
Q Consensus 176 ~sFD~V~~~f~l 187 (274)
+.+|+|+.+.+.
T Consensus 85 ~~~d~vi~~ag~ 96 (264)
T PRK12829 85 GGLDVLVNNAGI 96 (264)
T ss_pred CCCCEEEECCCC
Confidence 478999987654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.5 Score=40.79 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=54.0
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|. ||+|. | .++..|.+.+. .+|+++|.+++-++.+++...... ...+.++ .-+..|+|+.+.-.. ..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~---~~~~aDvViiavp~~---~~ 79 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAE---AVKGADLVILCVPVG---AS 79 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHH---HhcCCCEEEECCCHH---HH
Confidence 5788 99987 3 44555655553 489999999998887765321111 1112111 124579998774332 23
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 023974 194 DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvI 212 (274)
..+++++...++||+.++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 5677777778888875544
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.6 Score=39.34 Aligned_cols=97 Identities=14% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHhCCCCCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD 179 (274)
.....+.++.+|| .|.|. |..+..++.....+|+.++.+++-++.+++......+-..+ +..+. ....+|
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d 237 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELT-GKRGVD 237 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHh-CCCCCc
Confidence 3446778889999 88754 55555555543368999999998888775432211111111 00111 134689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.++.+.+- ..+.++.+.|+++|+++..
T Consensus 238 ~~i~~~g~-------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 238 VVVEHVGA-------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred EEEECCcH-------HHHHHHHHHhhcCCEEEEE
Confidence 99876542 3567778889999999873
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.91 Score=42.99 Aligned_cols=100 Identities=12% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe---e----ccCCCCCCCCcc
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG---E----LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D----ae~LPf~~~sFD 179 (274)
....+.++++|| .|+|. |..+..+++... .+|+++|.+++-++.+++- .. ..+.. + +.++. ...+|
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~-g~-~~v~~~~~~~~~~i~~~~--~~~~d 245 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI-GA-IPIDFSDGDPVEQILGLE--PGGVD 245 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC-eEeccCcccHHHHHHHhh--CCCCC
Confidence 456778899999 77764 555555655433 3799999999988888753 21 11111 1 11121 24689
Q ss_pred EEEecccCc----CC-CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPA----MP-FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~----~~-~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+-. +. .+....+.++.+.|+++|++++.
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 998654321 11 14456789999999999999763
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.6 Score=38.84 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=59.3
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEE
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V 181 (274)
...+.++.+|| .|| +.|..+..+++.....|++++.+++..+.+++. .--.++..+-.+.. .....+|.+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~~~~~~~d~v 212 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL-GADHVIDYRDPDLRERVKALTGGRGVDVV 212 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc-CCceeeecCCccHHHHHHHHcCCCCcEEE
Confidence 45677889999 998 345555555554335899999999998888653 21112211111110 123468998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+.+- ..+..+.+.++++|+++..
T Consensus 213 ~~~~g~-------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 213 YDPVGG-------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EECccH-------HHHHHHHHhhccCCEEEEE
Confidence 865431 3456667889999999863
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.7 Score=39.76 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=57.8
Q ss_pred CCeEE-EEcCchHHHHHHHH---hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCc
Q 023974 117 SSKVL-VSISSEEFVDRVVE---SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~---~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~ 188 (274)
..+|+ +|+|. ++..+++ .....|+++|.+++.++.++++.+++.++.||+.+.- ..-+.+|+|++...
T Consensus 231 ~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~-- 306 (453)
T PRK09496 231 VKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN-- 306 (453)
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC--
Confidence 46788 88754 4444333 2225899999999999999998888889999986532 22357888876432
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. .+..-....++|.+.+. +++.
T Consensus 307 ~-~~~n~~~~~~~~~~~~~-~ii~ 328 (453)
T PRK09496 307 D-DEANILSSLLAKRLGAK-KVIA 328 (453)
T ss_pred C-cHHHHHHHHHHHHhCCC-eEEE
Confidence 1 12333444556667554 4433
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.73 Score=46.38 Aligned_cols=98 Identities=8% Similarity=-0.027 Sum_probs=60.2
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 104 RIDQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
-++.+++..++ -.|.+|+ +|+|. |..+...++....+|+++|.++.-...|... ...+. +.+++ -...|+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~--G~~vv--~leEa---l~~ADV 312 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME--GYQVL--TLEDV---VSEADI 312 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc--CCeec--cHHHH---HhhCCE
Confidence 35566666554 5678999 99997 6555555443225899999998755455432 12211 22221 135799
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+.+-+-++ -+..+..+.+||||.|+..
T Consensus 313 VI~tTGt~~-----vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 313 FVTTTGNKD-----IIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred EEECCCCcc-----chHHHHHhcCCCCCEEEEc
Confidence 987543322 2336677789999999874
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.5 Score=42.53 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=64.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHH-HHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEe----eccC--CCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRV-VES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----ELIY--VPDKW 175 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L-~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Dae~--LPf~~ 175 (274)
+-..+..+++++|++|. +|||.=-++... ++. +..+|+|||+.++=++.|++- ....++.. |+-+ .-..+
T Consensus 174 ~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f-GAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 174 IGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF-GATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred hHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc-CCceeecchhhhhHHHHHHHhcC
Confidence 34667778999999999 999984343332 222 348999999999999999874 22222221 1111 11233
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.-.|.+|-.-+ +. ++++.....+.++|+.+|
T Consensus 253 gG~d~~~e~~G--~~----~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 253 GGADYAFECVG--NV----EVMRQALEATHRGGTSVI 283 (366)
T ss_pred CCCCEEEEccC--CH----HHHHHHHHHHhcCCeEEE
Confidence 46777764432 22 366666667888999988
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.18 Score=47.88 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCCC--CCCCCcc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYVP--DKWGPLD 179 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~LP--f~~~sFD 179 (274)
.+....+|| ||-|-|-+.+..++... ..++-+|+....++..++-. +.+....||.-.+- .+.++||
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 445667999 99999988777665533 78899999888777777643 35788889975542 2469999
Q ss_pred EEEeccc-CcCC--C-CHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFL-PAMP--F-PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~-l~~~--~-d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+.-.. +--. . =.+..++.+.+.|||||.+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 9985421 1000 0 1235677889999999999884
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.48 Score=45.12 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCC---
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPD--- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf--- 173 (274)
-+++.++.+.+.++...+ .--|.|--+.+++++.+ ++++|+|-.+.+|+.|+++. +++.++++...++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALK 90 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHH
Confidence 467889999999998888 88888889999988865 78999999999999999875 258888887666542
Q ss_pred --CCCCccEEEec
Q 023974 174 --KWGPLDVVFLY 184 (274)
Q Consensus 174 --~~~sFD~V~~~ 184 (274)
.-+.+|.|..-
T Consensus 91 ~~~i~~vDGiL~D 103 (314)
T COG0275 91 ELGIGKVDGILLD 103 (314)
T ss_pred hcCCCceeEEEEe
Confidence 23588888743
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.84 Score=42.14 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=48.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.+.+|| .|++ |-++..+ ++++ .+|++++-+++-++.+.+...++.++++|+.+.. ...+..|+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~ 102 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAG-AHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDI 102 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence 346788 7754 4454444 4444 5899999998877776666666888899987643 11257899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 103 li~nAg~ 109 (315)
T PRK06196 103 LINNAGV 109 (315)
T ss_pred EEECCCC
Confidence 9988764
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.4 Score=39.86 Aligned_cols=97 Identities=8% Similarity=-0.028 Sum_probs=59.9
Q ss_pred HHhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD 179 (274)
+....+.++++|| .|+ | .|..+..+++.....++.+.-+.+..+.+++ ..--.++..+-..+. .....+|
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~d 210 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-LGIGPVVSTEQPGWQDKVREAAGGAPIS 210 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-cCCCEEEcCCCchHHHHHHHHhCCCCCc
Confidence 3446788999999 775 3 3666666666533578888888887777765 321122222111110 1234699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ..+.+..+.|+++|+++..
T Consensus 211 ~v~d~~g~-------~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 211 VALDSVGG-------KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred EEEECCCC-------hhHHHHHHhhcCCcEEEEE
Confidence 99865442 2356778889999999863
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.4 Score=40.35 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=58.3
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEe
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~ 183 (274)
.+.++++|| .|+|+ |.++..+++... .+|++++-+++-.+.+++ +.--.++..+ ..++. .+..+|+|+-
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~i~~~~-~~~~~dvvld 241 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER-LGADHVLNASDDVVEEVRELT-GGRGADAVID 241 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH-hCCcEEEcCCccHHHHHHHHh-CCCCCCEEEE
Confidence 466789999 88654 334444555433 589999999988887743 4321122111 11122 2346999986
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+- ...+.+..+.|+++|+++..
T Consensus 242 ~~g~------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 242 FVGS------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred cCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 4331 35678888999999999864
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.8 Score=39.80 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=60.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----------CCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----------YVPDKW 175 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----------~LPf~~ 175 (274)
+....+.++++|| .|+|. |..+..+++. +...+++++-+++.++.+++ +....++..+-+ .+ ...
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~-~~~ 231 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA-MGADIVVDPAADSPFAAWAAELAR-AGG 231 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cCCcEEEcCCCcCHHHHHHHHHHH-hCC
Confidence 4556788999999 76532 3334444444 32458899999999988865 332222221111 11 123
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+-..+ . ...+.++.+.|+++|+++..
T Consensus 232 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 232 PKPAVIFECVG-----A-PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred CCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEE
Confidence 56999985432 1 14678888899999999874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.5 Score=41.05 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=58.1
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-Eeecc------CCCCCCCCccEEEecccC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELI------YVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae------~LPf~~~sFD~V~~~f~l 187 (274)
.+|+ +|+|. | .++.+|.+.+ ..|+.++-+.+-++..+++.. +... .++.. ..+...+.||+|+++- =
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~~~~~~i~~~~G-l~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v-K 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGG-LTLVEQGQASLYAIPAETADAAEPIHRLLLAC-K 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEechHHHHHHhhcCC-eEEeeCCcceeeccCCCCcccccccCEEEEEC-C
Confidence 3789 99998 4 5566666655 489999999877777665321 1111 01100 1122235899998762 1
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. .+.+++++.+...+.|+..++..
T Consensus 80 ~--~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 80 A--YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred H--HhHHHHHHHHHhhCCCCCEEEEE
Confidence 1 25678999999999999877664
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.4 Score=42.89 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=58.2
Q ss_pred CeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023974 118 SKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 118 ~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
++|+ +|||. |.. +..|.+++ .+|+.||.+++.++.+++ .+...+.||+.+-- ..-+..|.|++... +.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~--~~ 492 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG-IPLVVIETSRTRVDELRE--RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP--NG 492 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH--CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC--Ch
Confidence 5788 88887 433 33343344 589999999999999986 36888999998732 22357887765421 11
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
+....+-...|...|.-+++..
T Consensus 493 -~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 493 -YEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred -HHHHHHHHHHHHHCCCCeEEEE
Confidence 1122233445667888887764
|
|
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.70 E-value=2.9 Score=37.45 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
....++++|| .|++ .|..+..+++....+|++++-+++-++.+++ +.--..+. +.+++ .++.+|+|+-..+-
T Consensus 128 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~-~~~~~--~~~~~d~vl~~~g~- 202 (305)
T cd08270 128 GGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE-LGAAEVVV-GGSEL--SGAPVDLVVDSVGG- 202 (305)
T ss_pred hCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCcEEEe-ccccc--cCCCceEEEECCCc-
Confidence 3444588999 8773 4555555555433689999999999988876 43212211 11122 22468999865331
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+.+..+.|+++|+++..
T Consensus 203 ------~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 203 ------PQLARALELLAPGGTVVSV 221 (305)
T ss_pred ------HHHHHHHHHhcCCCEEEEE
Confidence 3577788899999999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=43.05 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhC--C-CcEEEEeCcHHHHHHH
Q 023974 115 DESSKVL-VSISSEEFVDRVVESS--P-SLLLVVHDSLFVLAGI 154 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~--~-~~V~gVD~S~~ML~~A 154 (274)
.....|+ +|||.-.+...|...+ . ..++-||+++-.-.+.
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 4556788 9999999999998876 3 6788889887766666
|
|
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=91.63 E-value=2.1 Score=40.66 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=57.3
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEe---e------ccCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQG---E------LIYVPDKWG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D------ae~LPf~~~ 176 (274)
+....+.++++|| .|+|. |..+..+++.... +|+++|.+++-++.+++ +..-.++.. + +.++. ..
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-lGa~~~i~~~~~~~~~~~~v~~~~--~~ 259 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLTEMT--DG 259 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCceEecccccchhHHHHHHHHh--CC
Confidence 4456788899999 86653 3444444444333 79999999999999955 432122211 1 11121 24
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHH-hcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLAN-RCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~R-vLKPGGrlvIs 213 (274)
.+|+|+-..+- ..++.+..+ .+++||++++.
T Consensus 260 ~~d~vld~~g~------~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 260 GVDFSFEVIGR------LDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred CCeEEEECCCC------cHHHHHHHHhhccCCCEEEEE
Confidence 68988754321 345555444 45689999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.6 Score=37.93 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=65.7
Q ss_pred CCCeEE-EEcCchHHHHHHHH----hCC-CcEEEEeCcHHHHHHHH----HhCCCceE--EEeeccC----CCCCCCCcc
Q 023974 116 ESSKVL-VSISSEEFVDRVVE----SSP-SLLLVVHDSLFVLAGIK----EKYDTVKC--WQGELIY----VPDKWGPLD 179 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~----~~~-~~V~gVD~S~~ML~~Ar----~k~~~v~~--~~gDae~----LPf~~~sFD 179 (274)
.+...+ +|.|+-.=++.|.+ ++. .+.+.||+|...|+.-. ..||.++. ++||.+. +| ..+.==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 356788 99999766665544 333 78999999999996533 34777543 5676543 44 223333
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.++....+.|.. +....|..+..+|+||-.+.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 345556777752 3346678899999999999995
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.7 Score=33.95 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred cCchHHHHHHHHh---CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCCCCHHHH
Q 023974 124 ISSEEFVDRVVES---SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMPFPLDQV 196 (274)
Q Consensus 124 cGTG~l~~~L~~~---~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~~d~~~a 196 (274)
||.|.++..+++. ....|+.+|.+++-.+.++++. +.++.||+.+.. ..-+..|.|++... . ......
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--~-d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTD--D-DEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESS--S-HHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--cccccccchhhhHHhhcCccccCEEEEccC--C-HHHHHH
Confidence 4555666655443 2138999999999999998776 778899987743 22367888876532 1 122344
Q ss_pred HHHHHHhcCCCCEEEEE
Q 023974 197 FETLANRCSPGARVVIS 213 (274)
Q Consensus 197 l~el~RvLKPGGrlvIs 213 (274)
+....|-+-|..+++..
T Consensus 79 ~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 79 IALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHCCCCeEEEE
Confidence 55567778888888774
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.3 Score=39.24 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=59.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCcc
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD 179 (274)
....+.++++|| .|||. |..+..+++... ..+++++-+++-.+.+++ +..-.++... +.++. .+..+|
T Consensus 162 ~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~ga~~v~~~~~~~~~~~i~~~~-~~~~~d 239 (345)
T cd08287 162 VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE-FGATDIVAERGEEAVARVRELT-GGVGAD 239 (345)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cCCceEecCCcccHHHHHHHhc-CCCCCC
Confidence 345778899999 77654 444555555543 459999988866666654 3321112111 11222 234689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+ . ...+..+.+.|+++|++++.
T Consensus 240 ~il~~~g-----~-~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 240 AVLECVG-----T-QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred EEEECCC-----C-HHHHHHHHHhhccCCEEEEe
Confidence 8885432 1 45788889999999999884
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.055 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=39.1
Q ss_pred CccEEEecccCcCC------CCHHHHHHHHHHhcCCCCEEEEEcCCC-------hhHHHHHHhhCcccccccCCCHHHHH
Q 023974 177 PLDVVFLYFLPAMP------FPLDQVFETLANRCSPGARVVISHPQG-------REALQKQRKQFPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 177 sFD~V~~~f~l~~~------~d~~~al~el~RvLKPGGrlvIs~~~g-------r~~l~~~~~~~~~~si~~fps~~eL~ 243 (274)
.||+|.|-.+.-|+ +-+...|+.+++.|+|||+|++. |+. +.........|.. +. + .++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE-pQ~w~sY~~~~~~~~~~~~n~~~--i~-l-rP~~F~ 75 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE-PQPWKSYKKAKRLSEEIRENYKS--IK-L-RPDQFE 75 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTTS-HHHHHHHHH--------GGGHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe-CCCcHHHHHHhhhhHHHHhHHhc--eE-E-ChHHHH
Confidence 38999877443222 24557899999999999999985 431 0011112222221 22 2 234677
Q ss_pred HHHHh--CCCcEeEEEe
Q 023974 244 KAAGN--HCFQIDNFVD 258 (274)
Q Consensus 244 ~ll~~--aGF~~v~~~d 258 (274)
..+.+ .||..++...
T Consensus 76 ~~L~~~evGF~~~e~~~ 92 (110)
T PF06859_consen 76 DYLLEPEVGFSSVEELG 92 (110)
T ss_dssp HHHTSTTT---EEEEE-
T ss_pred HHHHhcccceEEEEEcc
Confidence 77776 6997765443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.9 Score=37.37 Aligned_cols=94 Identities=19% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCCeEE-EEcCchHHHH----HHHHhCCCcEEEEeC-cHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEe
Q 023974 116 ESSKVL-VSISSEEFVD----RVVESSPSLLLVVHD-SLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFL 183 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~-S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~ 183 (274)
.+.+|| .|++.| ++. .|++.+ .+|+.++. +++-++...++. ++.++.+|+.+.. ...+.+|+++.
T Consensus 5 ~~k~vlItGasgg-IG~~~a~~l~~~G-~~v~~~~~~~~~~~~~l~~~~-~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 81 (237)
T PRK12742 5 TGKKVLVLGGSRG-IGAAIVRRFVTDG-ANVRFTYAGSKDAAERLAQET-GATAVQTDSADRDAVIDVVRKSGALDILVV 81 (237)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEecCCCHHHHHHHHHHh-CCeEEecCCCCHHHHHHHHHHhCCCcEEEE
Confidence 356888 776443 333 344444 47777654 555555544443 3566777765421 11256899998
Q ss_pred cccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEE
Q 023974 184 YFLPAMPF-----PLD--------------QVFETLANRCSPGARVVI 212 (274)
Q Consensus 184 ~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvI 212 (274)
+.+..... +++ ...+++.+.++++|++++
T Consensus 82 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 129 (237)
T PRK12742 82 NAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIII 129 (237)
T ss_pred CCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 86543221 111 123466677788898887
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=91.38 E-value=2.7 Score=37.97 Aligned_cols=97 Identities=9% Similarity=0.012 Sum_probs=62.4
Q ss_pred HHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCC
Q 023974 108 IISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~s 177 (274)
++....+.++++|| .|+ +.|..+..+++....+|++++-+++..+.+++ +.--.++...- .++ .....
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~~~ 211 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA-LGADVAVDYTRPDWPDQVREA-LGGGG 211 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCCEEEecCCccHHHHHHHH-cCCCC
Confidence 34456778899999 774 44666666666533689999999999888854 33212221110 111 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+ . ....+..+.|+++|+++..
T Consensus 212 ~d~vl~~~g-----~--~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 212 VTVVLDGVG-----G--AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred ceEEEECCC-----h--HhHHHHHHHhccCcEEEEE
Confidence 999986543 1 2357788999999999863
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.5 Score=39.05 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=43.9
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
+.++| .|++. .++.. |++.+ .+|+.+|-+++-++...+.. .++.++++|+.+... .-+..|+
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAG-ARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788 66544 44444 44445 58999999887665555443 357788888865320 1246899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 84 lv~~ag~ 90 (261)
T PRK08265 84 LVNLACT 90 (261)
T ss_pred EEECCCC
Confidence 9988654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.4 Score=40.47 Aligned_cols=83 Identities=18% Similarity=0.018 Sum_probs=53.2
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+|. ||+|. |.++..|.+.+ .+|+++|.+++.++.++++.- +.....+.+ .-...|+|+.+.-... ..+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g~-~~~~~~~~~----~~~~aDlVilavp~~~---~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGL-VDEASTDLS----LLKDCDLVILALPIGL---LLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC-cccccCCHh----HhcCCCEEEEcCCHHH---HHH
Confidence 577 99887 56666776655 489999999999988876521 111111211 1245799998743322 346
Q ss_pred HHHHHHHhcCCCCEE
Q 023974 196 VFETLANRCSPGARV 210 (274)
Q Consensus 196 al~el~RvLKPGGrl 210 (274)
+++++...++|+-.+
T Consensus 73 ~~~~l~~~l~~~~ii 87 (279)
T PRK07417 73 PSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHhCCCCcEE
Confidence 778888888776433
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=3.2 Score=36.44 Aligned_cols=66 Identities=8% Similarity=-0.049 Sum_probs=41.9
Q ss_pred eEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC-------CCCCccEEEeccc
Q 023974 119 KVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD-------KWGPLDVVFLYFL 186 (274)
Q Consensus 119 rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf-------~~~sFD~V~~~f~ 186 (274)
+|| .|+. |-++. .|++++ .+|+.+|-+++.++...+...++.++++|+.+... .....|.++.+.+
T Consensus 3 ~vlItGas-~giG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 3 AVLITGAT-SGIGKQLALDYAKQG-WQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 567 6654 43444 444444 58999999988887766666678888998865320 0123577766654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=91.11 E-value=1.8 Score=35.34 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=60.5
Q ss_pred EE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CC--ceEEEe-eccCCCCCCCCccEEEecccCcC
Q 023974 120 VL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DT--VKCWQG-ELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 120 VL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~--v~~~~g-Dae~LPf~~~sFD~V~~~f~l~~ 189 (274)
|+ +|+|. |.+....+.+....|+.++-++ -++..+++- +. ..+... .....+...+.+|+|+++- ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--Ka 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--KA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--SG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe--cc
Confidence 46 78876 5555544433336999999999 666655431 11 111111 1111123568999999872 11
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
.+.+.+++.+.+.+.|+..+++.+- |-+..+.+.+.+
T Consensus 78 -~~~~~~l~~l~~~~~~~t~iv~~qN-G~g~~~~l~~~~ 114 (151)
T PF02558_consen 78 -YQLEQALQSLKPYLDPNTTIVSLQN-GMGNEEVLAEYF 114 (151)
T ss_dssp -GGHHHHHHHHCTGEETTEEEEEESS-SSSHHHHHHCHS
T ss_pred -cchHHHHHHHhhccCCCcEEEEEeC-CCCcHHHHHHHc
Confidence 2567899999999999988877632 223334444444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.4 Score=38.71 Aligned_cols=96 Identities=10% Similarity=-0.054 Sum_probs=60.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~ 180 (274)
+...+.++++|| .|. +.|.++..+++....+|++++.+++-.+.+++ +.--.++..+-.+++ .....+|+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 212 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKK-AGAWQVINYREENIVERVKEITGGKKVRV 212 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CCCCEEEcCCCCcHHHHHHHHcCCCCeEE
Confidence 345678899999 753 23666666666533689999999998888854 432222222111111 12356898
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+ ...+.++.+.|+++|+++..
T Consensus 213 vl~~~~-------~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 213 VYDSVG-------KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred EEECCc-------HHHHHHHHHHhccCCEEEEE
Confidence 875432 24567788899999999864
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=91.08 E-value=3.3 Score=38.05 Aligned_cols=96 Identities=9% Similarity=-0.047 Sum_probs=56.8
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC----C--CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV----P--DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L----P--f~~~sFD~ 180 (274)
....+.++++|| .|+|. |.++..+++... .+|++++-+++-.+.+++ +... .+..+-.++ - ...+.+|+
T Consensus 161 ~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 161 KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA-LGAE-PINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred HhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-hCCe-EEecCCcCHHHHHHHHhCCCCCCE
Confidence 335677889999 75432 333344444433 379999888777666654 4321 121111111 0 12356898
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ . ...+.+..+.|+++|+++..
T Consensus 239 vid~~~-----~-~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 239 VLEAVG-----G-AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEE
Confidence 885422 1 35688888999999999874
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=91.05 E-value=2 Score=40.21 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCc-hHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCcc
Q 023974 104 RIDQIISAGEID-ESSKVL-VSISS-EEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGT-G~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD 179 (274)
.+...++..... .+.+|+ +|+|. |..+...++ .+ .+|+++|.+++-++.+++. ..+++ +.++++..-..+|
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~--G~~~~--~~~~l~~~l~~aD 212 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM--GLSPF--HLSELAEEVGKID 212 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc--CCeee--cHHHHHHHhCCCC
Confidence 344444444433 578999 99986 333333333 34 5999999998766666542 23332 2223333335799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+... +. .-.-+++.+.++||+.++-
T Consensus 213 iVI~t~-p~-----~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTI-PA-----LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECC-Ch-----hhhhHHHHHcCCCCcEEEE
Confidence 999763 21 1234567778999887763
|
|
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.03 E-value=2.2 Score=39.35 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=57.6
Q ss_pred CCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEEEec
Q 023974 115 DESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V~~~ 184 (274)
.++++|| .|+|. |.++..+++... ..|++++-+++-++.+++...+ .++... ..++. ..+.+|+|+-+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~-~~~~~~~~~~~~~~~~~~-~~~~~d~v~d~ 239 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGAT-RAVNVAKEDLRDVMAELG-MTEGFDVGLEM 239 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc-EEecCccccHHHHHHHhc-CCCCCCEEEEC
Confidence 4788999 66654 555555555433 3688999999888777653211 122111 11121 24568999864
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- ...+.++.+.|+++|+++..
T Consensus 240 ~g~------~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 240 SGA------PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEE
Confidence 332 45788889999999999885
|
|
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.5 Score=39.22 Aligned_cols=97 Identities=12% Similarity=-0.076 Sum_probs=57.9
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeec----cCCC--CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL----IYVP--DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa----e~LP--f~~~sFD~ 180 (274)
....+.++++|| .|+|. |..+..+++. +...++++|-+++-++.+++ +.--.++..+- +++- .....+|+
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~~vdv 246 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK-FGADVVLNPPEVDVVEKIKELTGGYGCDI 246 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH-cCCcEEecCCCcCHHHHHHHHhCCCCCCE
Confidence 456788899999 55533 3444445554 32568899999888776654 33111221110 0111 02235899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ . ...+.++.+.|+++|+++..
T Consensus 247 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 247 YIEATG-----H-PSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred EEECCC-----C-hHHHHHHHHHhhcCCEEEEE
Confidence 886432 1 24678889999999999873
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.77 Score=42.34 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=76.5
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----ce-------------------E-EEeeccC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----VK-------------------C-WQGELIY 170 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----v~-------------------~-~~gDae~ 170 (274)
.+|. ||+|+ | .++..++..+ .+|+.+|.+++.++.++++..+ +. . ...|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE- 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH-
Confidence 4688 99997 3 4455555555 4899999999999876553211 00 0 111211
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--------------------c
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--------------------D 230 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--------------------~ 230 (274)
.-...|+|+.+... .....+.+++++.+.++|+.. +++...+- .+.++..... +
T Consensus 82 ---~~~~aDlVieav~e-~~~~k~~~~~~l~~~~~~~~i-l~S~tsg~-~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE 155 (291)
T PRK06035 82 ---SLSDADFIVEAVPE-KLDLKRKVFAELERNVSPETI-IASNTSGI-MIAEIATALERKDRFIGMHWFNPAPVMKLIE 155 (291)
T ss_pred ---HhCCCCEEEEcCcC-cHHHHHHHHHHHHhhCCCCeE-EEEcCCCC-CHHHHHhhcCCcccEEEEecCCCcccCccEE
Confidence 12457999876422 222356888999999988764 45533321 2233321110 0
Q ss_pred cccccCCCH---HHHHHHHHhCCCcEeEEEecCCe
Q 023974 231 VIVSDLPDQ---MTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 231 ~si~~fps~---~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+.....-+. +.+..+++..|...+...|.++|
T Consensus 156 v~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgf 190 (291)
T PRK06035 156 VVRAALTSEETFNTTVELSKKIGKIPIEVADVPGF 190 (291)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCe
Confidence 011112233 34455778889988877666655
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.8 Score=38.67 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=53.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------C-----------ceEEEeeccCCCC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------T-----------VKCWQGELIYVPD 173 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------~-----------v~~~~gDae~LPf 173 (274)
.+|- ||+|+ | .++..++..+ .+|+++|.+++.++.++++.. . ......+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE--- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH---
Confidence 4677 99986 3 4455555555 489999999999887654311 0 0111122222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
-..-|+|+.+ ..-.......+++++...++|+..|+
T Consensus 81 -~~~aD~Viea-v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 -LRDADFIIEA-IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -hCCCCEEEEc-CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2446999876 33233345578888999898877554
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.94 E-value=2.1 Score=40.58 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=81.4
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCC--C-CccEEEec-----c---c
Q 023974 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKW--G-PLDVVFLY-----F---L 186 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~--~-sFD~V~~~-----f---~ 186 (274)
+++ +-||-|-+-.-+...+-.-+.++|+.+.-++.=+..++...++++|+.++..+. . .+|+++.. | +
T Consensus 5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG 84 (328)
T COG0270 5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAG 84 (328)
T ss_pred eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchhhcC
Confidence 678 888888777667665546789999999999999999987777888887654322 1 79999955 2 2
Q ss_pred Cc-CCCCHH----HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 187 PA-MPFPLD----QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 187 l~-~~~d~~----~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
-+ ...|++ --+.++...++| -.|++-.- .+.+.. .-..-+++.+.|++.||.+
T Consensus 85 ~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV--~gl~~~-----------~~~~~~~i~~~L~~~GY~~ 142 (328)
T COG0270 85 KRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENV--KGLLSS-----------KGQTFDEIKKELEELGYGV 142 (328)
T ss_pred cccCCcCccceeeHHHHHHHHhhCC-CEEEEecC--chHHhc-----------CchHHHHHHHHHHHcCCcc
Confidence 23 445555 234566677888 34444322 122221 1234578999999999963
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.6 Score=37.41 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=45.4
Q ss_pred CeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC------CCCCccEEEeccc
Q 023974 118 SKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD------KWGPLDVVFLYFL 186 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf------~~~sFD~V~~~f~ 186 (274)
.++| .|+ ||.++.. |+++ .+|+++|-+.+.++...+..+++.++++|+.+... .-+..|+|+.+.+
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAPT--HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHhh--CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 4688 665 4445444 4444 58999999988877776666678899999876321 1126899997755
Q ss_pred C
Q 023974 187 P 187 (274)
Q Consensus 187 l 187 (274)
.
T Consensus 81 ~ 81 (227)
T PRK08219 81 V 81 (227)
T ss_pred c
Confidence 4
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.86 E-value=1.2 Score=46.16 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=59.9
Q ss_pred CCCeEE-EEcCch--H-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCC----------CCCCCc
Q 023974 116 ESSKVL-VSISSE--E-FVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVP----------DKWGPL 178 (274)
Q Consensus 116 ~~~rVL-vGcGTG--~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LP----------f~~~sF 178 (274)
.+.+|| .|++.| . ++..|++.+ .+|+++|.+++-++.+.+.. .++.++++|+.+.. ...+.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 457888 775443 2 233344445 58999999998776665543 25777888875532 112478
Q ss_pred cEEEecccCcCCCC-------------------HHHHHHHHHHhcCC---CCEEEEE
Q 023974 179 DVVFLYFLPAMPFP-------------------LDQVFETLANRCSP---GARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d-------------------~~~al~el~RvLKP---GGrlvIs 213 (274)
|+|+.+.+...... ....++.+.+.+++ ||++++.
T Consensus 500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99998876433211 23445566666766 7888874
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.34 Score=44.67 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=55.6
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------------------ceEEEeeccCCCC
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------------------VKCWQGELIYVPD 173 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------------------v~~~~gDae~LPf 173 (274)
+|. ||+|+ +.++..|++.+ .+|+.+|.+++.++.++++... +++ ..| +..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~~~ 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLD---LKA 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCc---HHH
Confidence 678 99986 34555565555 4899999999999987753211 111 112 211
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.-..-|+|+.+ .+-...-.+.+++++.+.++||..+++.
T Consensus 78 ~~~~aD~Vi~a-vpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 78 AVADADLVIEA-VPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hhcCCCEEEEe-ccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 22457999865 2222212347788899999998777664
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.3 Score=37.05 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=43.8
Q ss_pred CCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 117 SSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+.+|| .|+ +|.++..+ ++++ .+|++++-+++-++...+..+ ++.++++|..+.. ...+.+|+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEG-ARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788 555 44454444 4444 589999998877766665544 4667788865532 11247899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 84 vi~~ag~ 90 (249)
T PRK06500 84 VFINAGV 90 (249)
T ss_pred EEECCCC
Confidence 9977654
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.82 E-value=4.9 Score=36.07 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCc-EEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSL-LLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~-V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sF 178 (274)
+....+.++.+|| .|+|. |..+..+++....+ |++++-+++-++.+++ +.--.++... +.++. ....+
T Consensus 122 ~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~~-~~~~v 199 (312)
T cd08269 122 FRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE-LGATEVVTDDSEAIVERVRELT-GGAGA 199 (312)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCCceEecCCCcCHHHHHHHHc-CCCCC
Confidence 3356778899999 76432 34444444443346 9999988887775543 3211122111 11111 23569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. ...+.++.+.|+++|+++..
T Consensus 200 d~vld~~g~------~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 200 DVVIEAVGH------QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CEEEECCCC------HHHHHHHHHHhccCCEEEEE
Confidence 999865322 34678888999999999874
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.8 Score=39.47 Aligned_cols=88 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------cCCCCCCCCccEEEecccCc
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------IYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------e~LPf~~~sFD~V~~~f~l~ 188 (274)
+|+ +|+|. | .++..|.+.+ .+|+.+|-+++-++..+++.-.+. .++. .+.. ....+|+|+++.-.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~-~~~~~d~vila~k~- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLRLE--DGEITVPVLAADDPA-ELGPQDLVILAVKA- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCccc--CCceeecccCCCChh-HcCCCCEEEEeccc-
Confidence 578 99987 3 3455555555 489999998887777765422110 1111 1111 12679999877322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+.+++.+...+.++..++..
T Consensus 77 --~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 77 --YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred --ccHHHHHHHHhhhcCCCCEEEEe
Confidence 25688999999888887766653
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.9 Score=38.21 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=47.5
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
++.+|| .|++.| .++..|++.+ .+|+.+|-+++.++...+..+ ++.++++|+.+.- ...+..|+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 83 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEG-ARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC 83 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 356888 776554 2233444445 589999999988887776654 4777888876532 11247899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.++
T Consensus 84 li~~ag~ 90 (263)
T PRK06200 84 FVGNAGI 90 (263)
T ss_pred EEECCCC
Confidence 9988664
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.80 E-value=3.6 Score=37.82 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=60.8
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEE
Q 023974 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V 181 (274)
..+.++++|| .|+| .|..+..+++....+|+++.-+++-.+.+++ +.--.++... +.++. ....+|+|
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~-~~~~vd~v 238 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-LGADAFVDFKKSDDVEAVKELT-GGGGAHAV 238 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCcEEEcCCCccHHHHHHHHh-cCCCCCEE
Confidence 4788899999 8876 4666666666533589999999988887743 3311111111 11111 23568998
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-..+- ...+.++.+.|+++|+++..
T Consensus 239 l~~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 239 VVTAVS------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred EEcCCc------hHHHHHHHHHhhcCCEEEEe
Confidence 842211 34677888999999999974
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.45 Score=39.22 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=50.6
Q ss_pred CCCeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 116 ESSKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+.+|| ||+|- | ..+.+|...+..+|+.+.-+.+-.+...+.+++..+...+.++++.....+|+|+.+-..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SST
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCC
Confidence 567999 99986 3 334456666656799999999887777777765555555666776555789999977433
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.63 E-value=4.2 Score=36.36 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=54.3
Q ss_pred CCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CCCCCCccEEEeccc
Q 023974 113 EIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PDKWGPLDVVFLYFL 186 (274)
Q Consensus 113 ~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf~~~sFD~V~~~f~ 186 (274)
.+.++++|| .|+ +.|..+..+++....+|++++-+ +..+.+++ +.--.++...-... ....+.+|+|+.+.+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 217 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRS-LGADEVIDYTTEDFVALTAGGEKYDVIFDAVG 217 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHH-cCCCEeecCCCCCcchhccCCCCCcEEEECCC
Confidence 477899999 887 34666666666533589998855 77777744 33111111111111 123456999986543
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ........ ...|+++|+++..
T Consensus 218 ~----~~~~~~~~-~~~l~~~g~~i~~ 239 (319)
T cd08267 218 N----SPFSLYRA-SLALKPGGRYVSV 239 (319)
T ss_pred c----hHHHHHHh-hhccCCCCEEEEe
Confidence 2 11222322 2339999999874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.8 Score=38.35 Aligned_cols=89 Identities=16% Similarity=0.248 Sum_probs=52.7
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEEEecccCc
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V~~~f~l~ 188 (274)
+|+ +|+|. | .++..|++.+ .+|+.++- ++-++..++..-.+.-..++ ..+.......+|+|+++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g-~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 578 98887 3 3455555555 48999998 77777666532111111111 11111112679999876322
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+.+.+++++...++++..++.
T Consensus 79 --~~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 79 --YQLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred --cCHHHHHHHHHhhcCCCCEEEE
Confidence 2568899999988888765554
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.5 Score=38.97 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=45.9
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC---------CCCCccE
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD---------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf---------~~~sFD~ 180 (274)
+.+|| .|++.| .++..|++++ .+|++++-+++-++...+.. .++.++.+|+.+... ..+..|+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~ 83 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV 83 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence 45788 776653 3444555555 58999999988776665442 357788888765321 1256899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 84 lv~~ag~ 90 (263)
T PRK09072 84 LINNAGV 90 (263)
T ss_pred EEECCCC
Confidence 9988654
|
|
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.5 Score=40.16 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHhCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccCCCCCCCCccEEEe
Q 023974 109 ISAGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~LPf~~~sFD~V~~ 183 (274)
+..+.+.++++|| .|++ .|..+..+++....+|++++-+++..+.+++ + ...++..+ .+++... +.+|+++-
T Consensus 155 ~~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~~-~~~d~~ld 231 (334)
T PRK13771 155 LRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSK-Y-ADYVIVGSKFSEEVKKI-GGADIVIE 231 (334)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-H-HHHhcCchhHHHHHHhc-CCCcEEEE
Confidence 3345778899999 8883 3666666666543689999999998888754 2 11111111 1111111 25888886
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+ ...+.++.+.|++||+++..
T Consensus 232 ~~g-------~~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 232 TVG-------TPTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred cCC-------hHHHHHHHHHHhcCCEEEEE
Confidence 533 12567888889999999874
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.41 E-value=3.8 Score=36.53 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=57.8
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEE
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVV 181 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V 181 (274)
...+.++++|| .|+ |.|..+..+++....+++.++.+.+-++.+++ .+.-.++..+...++ .....+|++
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v 217 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA-LGAAHVIVTDEEDLVAEVLRITGGKGVDVV 217 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCCCEEEecCCccHHHHHHHHhCCCCceEE
Confidence 45677888999 886 33455555554433689999999988887754 322222222211111 123469999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+.+- ....+..+.++++|+++.
T Consensus 218 i~~~~~-------~~~~~~~~~l~~~g~~v~ 241 (328)
T cd08268 218 FDPVGG-------PQFAKLADALAPGGTLVV 241 (328)
T ss_pred EECCch-------HhHHHHHHhhccCCEEEE
Confidence 865432 245666778999999985
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=90.37 E-value=3.2 Score=37.65 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=56.1
Q ss_pred CCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEEeccc
Q 023974 116 ESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 116 ~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~~~f~ 186 (274)
++.+|| .|+ | .|.++..+++....+|++++-+++-.+.+++ +.--.++..+ +..+ ....+|+|+-..+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-LGAKEVIPREELQEESIKPL--EKQRWAGAVDPVG 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-cCCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence 467999 887 2 3555556666533589999999998888865 3311111111 1122 2346898875432
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|+++|+++..
T Consensus 223 -------~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 223 -------GKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -------HHHHHHHHHHhhcCCEEEEE
Confidence 24677888899999999874
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.5 Score=36.80 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=60.2
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----CCCCCCccEEE
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----PDKWGPLDVVF 182 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----Pf~~~sFD~V~ 182 (274)
...+.++++|| .|+ +.|..+..+++....+|++++-+++..+.+++ +.--.++..+-..+ ...+..+|+|+
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~ 212 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS-LGCDRPINYKTEDLGEVLKKEYPKGVDVVY 212 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH-cCCceEEeCCCccHHHHHHHhcCCCCeEEE
Confidence 35678899999 874 34666666666544579999999998888854 43212222211110 01124689888
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+.+ ...+.++.+.|+++|+++.
T Consensus 213 ~~~g-------~~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 213 ESVG-------GEMFDTCVDNLALKGRLIV 235 (329)
T ss_pred ECCc-------HHHHHHHHHHhccCCeEEE
Confidence 6432 2567888899999999985
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.92 Score=43.66 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=71.2
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
+.++ +|. +|-|. |.-++.++--..+.|+-+|+|.+-|.+...-+. ++..+.-...++-..-...|+|+.+-.+---
T Consensus 166 V~~~-kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPA-KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCc-cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3443 556 88887 555555544323799999999999988877654 3566666655565555779999987655555
Q ss_pred CCHHHHHHHHHHhcCCCCEEE
Q 023974 191 FPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlv 211 (274)
..|.-+.+|+..-+|||+.++
T Consensus 245 kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCceehhHHHHHhcCCCcEEE
Confidence 688899999999999999875
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.4 Score=39.22 Aligned_cols=93 Identities=15% Similarity=0.070 Sum_probs=58.9
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee---------------------
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--------------------- 167 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--------------------- 167 (274)
..+.++++|| .|+ +.|..+..+++....++++++.+++.++.+++ +.....+..+
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA-LGAEGVINRRDFDHWGVLPDVNSEAYTAWTK 267 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCCCEEEcccccccccccccccchhhhhhhh
Confidence 4677889999 886 33555666666533578899999999999876 4321111110
Q ss_pred --------ccCCCCCCC-CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 168 --------LIYVPDKWG-PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 168 --------ae~LPf~~~-sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.++. ... .+|+|+-..+ ...+.+..+.|+++|++++.
T Consensus 268 ~~~~~~~~v~~l~-~~~~g~d~vid~~g-------~~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 268 EARRFGKAIWDIL-GGREDPDIVFEHPG-------RATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred ccchHHHHHHHHh-CCCCCCeEEEECCc-------hHhHHHHHHHhccCCEEEEE
Confidence 00111 112 5898885432 13567778899999999874
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.95 E-value=3.1 Score=38.00 Aligned_cols=95 Identities=12% Similarity=0.099 Sum_probs=60.0
Q ss_pred HhCCCCC-----CCeEE-EEc--CchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCC
Q 023974 110 SAGEIDE-----SSKVL-VSI--SSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDK 174 (274)
Q Consensus 110 ~~~~~~~-----~~rVL-vGc--GTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~ 174 (274)
...++.+ +.+|| .|+ |.|..+..+++.. ..+|++++-+++..+.+++ +.--.++.-+ +.++ .
T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~i~~~--~ 213 (336)
T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE-LGAHHVIDHSKPLKAQLEKL--G 213 (336)
T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH-cCCCEEEECCCCHHHHHHHh--c
Confidence 3455555 88999 775 4566666666643 3589999999998888854 4321222101 1111 2
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+|+|+-..+ . ...+.+..+.|+++|+++..
T Consensus 214 ~~~vd~vl~~~~-----~-~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 214 LEAVSYVFSLTH-----T-DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCCCCEEEEcCC-----c-HHHHHHHHHHhccCCEEEEE
Confidence 346898874321 1 34677888999999999864
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.44 Score=46.56 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHhCCCceEEEeeccCCC--CCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023974 154 IKEKYDTVKCWQGELIYVP--DKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 154 Ar~k~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
.|++...++++.+++++.. ..++++|.++..-..-|++ +.++.++++.|+++||||++.-
T Consensus 270 lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 270 LRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred HhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3444566889999998854 3579999999987777764 3447788999999999999994
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.55 Score=44.92 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=49.5
Q ss_pred EEeeccCCCCCCCCccEEEecccCcCCCCH------------------------HHHHH---------------HHHHhc
Q 023974 164 WQGELIYVPDKWGPLDVVFLYFLPAMPFPL------------------------DQVFE---------------TLANRC 204 (274)
Q Consensus 164 ~~gDae~LPf~~~sFD~V~~~f~l~~~~d~------------------------~~al~---------------el~RvL 204 (274)
+-|....--|++++.|++++++++||.... ..+.+ -=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 346666655889999999999999996521 11111 114569
Q ss_pred CCCCEEEEEcC-------C---ChhHHHHHHhhCccc---------------ccccCCCHHHHHHHHHhCC-CcEeEE
Q 023974 205 SPGARVVISHP-------Q---GREALQKQRKQFPDV---------------IVSDLPDQMTLQKAAGNHC-FQIDNF 256 (274)
Q Consensus 205 KPGGrlvIs~~-------~---gr~~l~~~~~~~~~~---------------si~~fps~~eL~~ll~~aG-F~~v~~ 256 (274)
+|||+++++-. . ....++.+...|.+. ....+|+.+|+++.+++.| |.+...
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~l 251 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKL 251 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEE
Confidence 99999999521 1 011223332222211 3467899999999998888 665433
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.3 Score=35.37 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=52.4
Q ss_pred eEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHH
Q 023974 119 KVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 119 rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
+||+.||+|.-+-.+++ .|-+.++++.-++++.+....+++...+.+|+|+..=-+ +-.+.
T Consensus 2 ~Ill~C~~GaSSs~la~-------------km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv------~~~~~ 62 (99)
T cd05565 2 NVLVLCAGGGTSGLLAN-------------ALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM------ASYYD 62 (99)
T ss_pred EEEEECCCCCCHHHHHH-------------HHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChH------HHHHH
Confidence 57789999965555543 366777777667888888888888777889999876333 33455
Q ss_pred HHHHhcCCCCEEEE
Q 023974 199 TLANRCSPGARVVI 212 (274)
Q Consensus 199 el~RvLKPGGrlvI 212 (274)
++...+.+-|.-+.
T Consensus 63 ~i~~~~~~~~ipv~ 76 (99)
T cd05565 63 ELKKDTDRLGIKLV 76 (99)
T ss_pred HHHHHhhhcCCCEE
Confidence 56666777666444
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.32 Score=46.42 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=43.2
Q ss_pred ceEEEeeccCCCCCC-------CCccEEEecccCcC-----CCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 161 VKCWQGELIYVPDKW-------GPLDVVFLYFLPAM-----PFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 161 v~~~~gDae~LPf~~-------~sFD~V~~~f~l~~-----~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
++|.+.|+..+..++ ...|+|+.-|.++= ...--+.|..+..+|+||-.|.|.+..|
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 689999998887643 35788887776542 3344578899999999999999976554
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=89.57 E-value=4.4 Score=36.06 Aligned_cols=94 Identities=10% Similarity=-0.037 Sum_probs=58.8
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-Eeec-------cCCCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGEL-------IYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDa-------e~LPf~~~s 177 (274)
.....+.++++|| .|. |.|..+..+++....+|++++.+++..+.+++ .. ++.+ ...- ..+. ....
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~-~~~~ 208 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEA-LG-ADIAINYREEDFVEVVKAET-GGKG 208 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-CcEEEecCchhHHHHHHHHc-CCCC
Confidence 3456788899999 775 34555555555433689999999988887744 32 2211 1110 0111 2246
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+++.+.+ ...+.+..+.++++|+++.
T Consensus 209 ~d~~i~~~~-------~~~~~~~~~~l~~~g~~v~ 236 (325)
T TIGR02824 209 VDVILDIVG-------GSYLNRNIKALALDGRIVQ 236 (325)
T ss_pred eEEEEECCc-------hHHHHHHHHhhccCcEEEE
Confidence 999986543 1356677788999999986
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.77 Score=39.38 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE 156 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~ 156 (274)
-++++|+.. -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++..++|++
T Consensus 180 l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh-hccceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 556777655 46789999 8899998877776666 489999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=89.40 E-value=9.7 Score=35.03 Aligned_cols=138 Identities=13% Similarity=0.049 Sum_probs=75.6
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccC-CC--CCCCCcc-----E
Q 023974 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIY-VP--DKWGPLD-----V 180 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~-LP--f~~~sFD-----~ 180 (274)
..|+ +|||-=....++......+++=||.-. +++.-++.+ .+..++.+|+.+ +. +....|| +
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 4688 999997777666322115677777755 554444332 245677777641 11 1112232 3
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCC--ChhH----HHHHHhhCccc---ccccCCCHHHHHHHHHhC
Q 023974 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQ--GREA----LQKQRKQFPDV---IVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~--gr~~----l~~~~~~~~~~---si~~fps~~eL~~ll~~a 249 (274)
+++-.++-.+. +.++.|+.+.+...||+++++.... .... .....+..... ......+.+++..++++.
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER 241 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence 33333443432 3446788888888899999984321 1111 11111111100 111223579999999999
Q ss_pred CCcEeEE
Q 023974 250 CFQIDNF 256 (274)
Q Consensus 250 GF~~v~~ 256 (274)
||+....
T Consensus 242 Gw~~~~~ 248 (260)
T TIGR00027 242 GWRASEH 248 (260)
T ss_pred CCeeecC
Confidence 9987654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.7 Score=37.75 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=44.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC-----C-----CC
Q 023974 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD-----K-----WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf-----~-----~~ 176 (274)
++.+|| .|+ +|.++..+ ++++ .+|++++-+++-++...++ ..++.++++|+.+... . -+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356788 665 44455444 4444 4899999888766655433 2457888888865321 1 15
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 78999987654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.3 Score=36.97 Aligned_cols=70 Identities=9% Similarity=-0.054 Sum_probs=47.0
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccEEE
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDVVF 182 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~V~ 182 (274)
+.++| .|++.| .++..|++++ .+|+.++-+++-++...+....+.++++|+.+.. ...+..|+++
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG-ARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV 83 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45788 777554 2233444445 5899999999888776666656788888876532 1125789999
Q ss_pred ecccC
Q 023974 183 LYFLP 187 (274)
Q Consensus 183 ~~f~l 187 (274)
.+.+.
T Consensus 84 ~~ag~ 88 (273)
T PRK07825 84 NNAGV 88 (273)
T ss_pred ECCCc
Confidence 88654
|
|
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=89.25 E-value=4.3 Score=36.83 Aligned_cols=95 Identities=9% Similarity=-0.017 Sum_probs=56.2
Q ss_pred hCCCCCCC-eEE-EEc-Cc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-cc-CC-CCCCCCccEEEe
Q 023974 111 AGEIDESS-KVL-VSI-SS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-LI-YV-PDKWGPLDVVFL 183 (274)
Q Consensus 111 ~~~~~~~~-rVL-vGc-GT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-ae-~L-Pf~~~sFD~V~~ 183 (274)
...+.+++ +|| .|+ |+ |.++..+++....+++.++-+++-.+.+++ ..--.++..+ .. .+ ....+.+|+|+-
T Consensus 139 ~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~d~vld 217 (323)
T TIGR02823 139 RNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE-LGASEVIDREDLSPPGKPLEKERWAGAVD 217 (323)
T ss_pred hcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-cCCcEEEccccHHHHHHHhcCCCceEEEE
Confidence 34477888 999 887 32 555555655433578888888777777754 3211122111 00 00 011234898876
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+- ..+.++.+.|+++|+++..
T Consensus 218 ~~g~-------~~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 218 TVGG-------HTLANVLAQLKYGGAVAAC 240 (323)
T ss_pred CccH-------HHHHHHHHHhCCCCEEEEE
Confidence 5431 3467788889999999874
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.2 Score=41.59 Aligned_cols=87 Identities=18% Similarity=0.066 Sum_probs=54.8
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSISS--EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|+ +|.|- |.++..|.+.+. ..|+|.|.+.+-++.|.+.- +..-..+.. .-......|+|+.+--+. -.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--v~d~~~~~~-~~~~~~~aD~VivavPi~---~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--VIDELTVAG-LAEAAAEADLVIVAVPIE---AT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--cccccccch-hhhhcccCCEEEEeccHH---HH
Confidence 4677 88776 566777777776 67899999998888876532 211111110 012335689999773332 34
Q ss_pred HHHHHHHHHhcCCCCEE
Q 023974 194 DQVFETLANRCSPGARV 210 (274)
Q Consensus 194 ~~al~el~RvLKPGGrl 210 (274)
.++++++...||||-.+
T Consensus 78 ~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHhcccCCCCCEE
Confidence 67888888778876544
|
|
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=89.20 E-value=4.2 Score=35.22 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=60.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC------CCCCCcc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP------DKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP------f~~~sFD 179 (274)
+...+.++++|| .|+ +.|.++..+++....+|++++.+++..+.+++... ...++.....++. .....+|
T Consensus 102 ~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 181 (293)
T cd05195 102 DLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVD 181 (293)
T ss_pred HHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCce
Confidence 345778999999 763 34556666666543689999999888888876542 1111211100010 1134689
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+|+-..+ . ..+.++.+.|+++|+++.
T Consensus 182 ~vi~~~~-----~--~~~~~~~~~l~~~g~~v~ 207 (293)
T cd05195 182 VVLNSLS-----G--ELLRASWRCLAPFGRFVE 207 (293)
T ss_pred EEEeCCC-----c--hHHHHHHHhcccCceEEE
Confidence 8885433 1 267778888999999986
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=89.15 E-value=3.4 Score=37.59 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccCCCCCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~LPf~~~sFD~ 180 (274)
+....+.++++|| +|+ | .|..+..+++....+|++++-+ +.++ ++.--.++..+ +..+. +.+|+
T Consensus 155 l~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~-~~g~~~~~~~~~~~~~l~~~~---~~~d~ 226 (325)
T cd08264 155 LKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLK-EFGADEVVDYDEVEEKVKEIT---KMADV 226 (325)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHH-HhCCCeeecchHHHHHHHHHh---CCCCE
Confidence 3446788999999 886 3 3555555655433578888622 3342 23211111111 11221 56899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-..+ ...+.+..+.|+++|+++..
T Consensus 227 vl~~~g-------~~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 227 VINSLG-------SSFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred EEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 886432 14788889999999999974
|
This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.1 Score=40.81 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=54.8
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc-----e-----EE-EeeccCCCCCCCCccEEEe
Q 023974 118 SKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV-----K-----CW-QGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v-----~-----~~-~gDae~LPf~~~sFD~V~~ 183 (274)
.+|- ||.|- +.++..|++.+. +|+++|.+++-++..++....+ . .+ .|...... ..+.-|+|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEE
Confidence 3677 88875 355566666664 8999999999888654321110 0 00 00000000 1125799987
Q ss_pred cccCc-------CCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 184 YFLPA-------MPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 184 ~f~l~-------~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+..-- .......+++.+.+.|++|-.+++...
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 64321 112345677889999999777766433
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.2 Score=39.34 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccC-CC--CCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIY-VP--DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~-LP--f~~~sFD~ 180 (274)
.+..++++|++|| .|. |-|.++..|++.....++++--|++=.+.+++...+ +.+...|..+ +- .....+|+
T Consensus 135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 3346788899999 663 346777778776323788888888777766665443 2322332221 21 12347999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-.-+- ..+.+..+.|++||+++..
T Consensus 215 v~D~vG~-------~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 215 VLDTVGG-------DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred EEECCCH-------HHHHHHHHHhccCCEEEEE
Confidence 9976443 4456677789999999883
|
|
| >cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.01 E-value=5.8 Score=35.80 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=58.4
Q ss_pred hCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec--------cCCCCCCCCccE
Q 023974 111 AGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL--------IYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa--------e~LPf~~~sFD~ 180 (274)
...+.++++|| .|+|. |..+..+++....+|+.++.+++-++.+++. ..-.++..+- ..+. ..+.+|+
T Consensus 155 ~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 232 (336)
T cd08276 155 LGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL-GADHVINYRTTPDWGEEVLKLT-GGRGVDH 232 (336)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEEEcCCcccCHHHHHHHHc-CCCCCcE
Confidence 34678888999 65532 4444444444336899999999988888763 2212221111 1111 2356999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++-+.+ ...+.+..+.|+++|+++..
T Consensus 233 ~i~~~~-------~~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 233 VVEVGG-------PGTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred EEECCC-------hHHHHHHHHhhcCCCEEEEE
Confidence 985421 24677888999999999863
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.7 Score=42.39 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHhCCCCCCC--eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH---Hh---CC--------CceEEEeec
Q 023974 106 DQIISAGEIDESS--KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK---EK---YD--------TVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~~--rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar---~k---~~--------~v~~~~gDa 168 (274)
..++++++++++. +|| .-+|-|.=+..++..| ++|++++-|+-|-...+ ++ .+ .++.+.+|.
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence 3677888888875 899 8888887777676666 59999999998655443 22 11 368889998
Q ss_pred cC-CCCCCCCccEEEec
Q 023974 169 IY-VPDKWGPLDVVFLY 184 (274)
Q Consensus 169 e~-LPf~~~sFD~V~~~ 184 (274)
.+ |+..+++||+|.+-
T Consensus 142 ~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 142 LEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp CCHCCCHSS--SEEEE-
T ss_pred HHHHhhcCCCCCEEEEC
Confidence 77 66668999999865
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=88.93 E-value=3.2 Score=37.48 Aligned_cols=92 Identities=9% Similarity=-0.031 Sum_probs=57.4
Q ss_pred CCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccEE
Q 023974 112 GEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDVV 181 (274)
Q Consensus 112 ~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~V 181 (274)
..+.++++|| .|++ .|..+..+++....+++++.-+++-.+.+++ ..--.++..+ +..+. ....+|+|
T Consensus 134 ~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~v 211 (323)
T cd05282 134 LKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA-LGADEVIDSSPEDLAQRVKEAT-GGAGARLA 211 (323)
T ss_pred ccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh-cCCCEEecccchhHHHHHHHHh-cCCCceEE
Confidence 4567889999 8763 4666666666533688898888888888854 3211122111 11111 23569999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+.+- ....++.+.|+++|+++.
T Consensus 212 l~~~g~-------~~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 212 LDAVGG-------ESATRLARSLRPGGTLVN 235 (323)
T ss_pred EECCCC-------HHHHHHHHhhCCCCEEEE
Confidence 865431 124566789999999985
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=88.92 E-value=4 Score=36.13 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=58.5
Q ss_pred hCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCCccE
Q 023974 111 AGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~sFD~ 180 (274)
...+.++.+|| .|++ .|..+..+++.....|+.++.+++.++.+++ ...-..+... +..+. ....+|+
T Consensus 134 ~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 211 (323)
T cd05276 134 LGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRA-LGADVAINYRTEDFAEEVKEAT-GGRGVDV 211 (323)
T ss_pred hcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-cCCCEEEeCCchhHHHHHHHHh-CCCCeEE
Confidence 35678889999 8863 4555555555433689999999999888854 3211111111 01111 1246999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.+.+- ..+....+.++++|+++..
T Consensus 212 vi~~~g~-------~~~~~~~~~~~~~g~~i~~ 237 (323)
T cd05276 212 ILDMVGG-------DYLARNLRALAPDGRLVLI 237 (323)
T ss_pred EEECCch-------HHHHHHHHhhccCCEEEEE
Confidence 9876542 2255667789999999863
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.2 Score=43.28 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=48.8
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C-----CCcEEEEeCcHHHHHHHHHhCCC
Q 023974 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S-----PSLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~-----~~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
||..-..|.-++++..+.+..-.++ +|.|+|.++..+++. . +.++.-|.+|++..+.=|+...+
T Consensus 58 FGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 58 FGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4555556888888888877777888 999999987766542 2 27899999999988776666544
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.87 E-value=3.3 Score=40.59 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEeccc-CcCC
Q 023974 115 DESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFL-PAMP 190 (274)
Q Consensus 115 ~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~-l~~~ 190 (274)
.++.+|+ +|||. |..+.. |...+...|+.+|.+++-.+...++++. ... +.+++...-..+|+|+.+-+ .+.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-~~~--~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-EAI--PLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-cEe--eHHHHHHHhccCCEEEECCCCCCcE
Confidence 4678999 99876 444433 3333435899999999877655555542 121 11222222246899997743 4444
Q ss_pred CCHHHHHHHHHHhcCCCCEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvI 212 (274)
.+. +.++.+.+.=+.++.++|
T Consensus 257 i~~-~~l~~~~~~~~~~~~vvi 277 (423)
T PRK00045 257 IGK-GMVERALKARRHRPLLLV 277 (423)
T ss_pred EcH-HHHHHHHhhccCCCeEEE
Confidence 343 334443221113456666
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=88.85 E-value=1.7 Score=44.25 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc-cCcCCCC
Q 023974 117 SSKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMPFP 192 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~~d 192 (274)
+.+|+ ||+|. |.. +..|...+..+|+.++.+.+-.+...++++++.....+.++++..-...|+|+++- ..+.+-.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~ 345 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFL 345 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeC
Confidence 57899 99965 322 33343344357999999999888887777654333333334443346789998762 3333323
Q ss_pred HHHHHHHH
Q 023974 193 LDQVFETL 200 (274)
Q Consensus 193 ~~~al~el 200 (274)
.+.++++
T Consensus 346 -~e~l~~~ 352 (519)
T PLN00203 346 -KEHVEAL 352 (519)
T ss_pred -HHHHHHh
Confidence 3445554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=3.6 Score=40.14 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=54.2
Q ss_pred eEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--------------ceEEEeeccCCCCCCCCccEEE
Q 023974 119 KVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--------------VKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 119 rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--------------v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+|- ||+|. |.-+..+...+ ..|+++|.+++-++.+++.... .++. .+ .+....-..-|+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~-~t-~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQN-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFN-AT-LDKNEAYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE-Ee-cchhhhhcCCCEEE
Confidence 455 77664 43333333345 4899999999999988874311 1121 11 01111124568888
Q ss_pred eccc-Cc----CC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023974 183 LYFL-PA----MP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 183 ~~f~-l~----~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
.+.. .- .. ...+.+++++.+ ++||..+++......+..+++
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l 127 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAM 127 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHH
Confidence 7632 20 11 233567778887 788766666433333333333
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.8 Score=36.59 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=53.2
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcH-HHHHHHHHh----CCCceEEEeeccCCCC----------CC
Q 023974 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSL-FVLAGIKEK----YDTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~-~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~ 175 (274)
.+.++| .|+. |-++..+ ++.+ .+|++++-+. ..++...++ ..++.++++|+.+.-. ..
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 356788 7753 3344444 4444 4788887643 333333221 2356778888765321 11
Q ss_pred CCccEEEecccCcCC-------------CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMP-------------FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~-------------~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+.+.+.... .-+...++.+.+.++.+|++++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 468998877543211 11235666666666677888763
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.8 Score=36.73 Aligned_cols=70 Identities=4% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCeEEEEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCCc
Q 023974 117 SSKVLVSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 117 ~~rVLvGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~sF 178 (274)
+.+|||-.|||.++.. |++.+ .+|++++-+++.++.+.+. ..++.++++|+.+... ..++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5577744455555444 44444 4899999998666554443 2346778888765331 12468
Q ss_pred cEEEecccC
Q 023974 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 86 d~vi~~ag~ 94 (262)
T PRK13394 86 DILVSNAGI 94 (262)
T ss_pred CEEEECCcc
Confidence 999987654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.4 Score=39.91 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCC-CCeEE-EEcCchHHHHHHHHh-C---C-----CcEEEEeCcHHHHHHHHHhCCC
Q 023974 104 RIDQIISAGEIDE-SSKVL-VSISSEEFVDRVVES-S---P-----SLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 104 w~~~ll~~~~~~~-~~rVL-vGcGTG~l~~~L~~~-~---~-----~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
|+-...+..+-.. .-+|+ +|.|+|.++..+++. . | .+++-|+.|+.|.+.-+++..+
T Consensus 5 ~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 5 WIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5556666664322 35889 999999998877553 1 1 4799999999999888887654
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.4 Score=37.41 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~s 177 (274)
.+.++| .|+++| .++..|++.+ .+|+.++-+++-++...++. .++.++++|+.+.. ...+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 356788 787655 3344455555 48999999887776655432 34667788875522 11257
Q ss_pred ccEEEecccCc
Q 023974 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
.|+++.+.+..
T Consensus 87 id~lv~~ag~~ 97 (253)
T PRK05867 87 IDIAVCNAGII 97 (253)
T ss_pred CCEEEECCCCC
Confidence 99999886653
|
|
| >PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=2.1 Score=33.40 Aligned_cols=20 Identities=0% Similarity=-0.107 Sum_probs=14.2
Q ss_pred cCcCCCCHHHHHHHHHHhcC
Q 023974 186 LPAMPFPLDQVFETLANRCS 205 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLK 205 (274)
.+.+..|.++..+++..+|+
T Consensus 74 ~llt~~~~~~~~e~i~~~l~ 93 (94)
T PRK10310 74 PFVSGVGIEALQNKILTILQ 93 (94)
T ss_pred ecccccCHHHHHHHHHHHHc
Confidence 44455578888888887774
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.1 Score=40.87 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCC
Q 023974 129 FVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPG 207 (274)
Q Consensus 129 l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPG 207 (274)
++.+|.+.++ .+|+|.|.+++.++.|++.-- +.-...+.+.+ ..+|+|+.+--+. ...++++++...+++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-IDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-SSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHHCGS-TT
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-eeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhhhhcCCC
Confidence 4567877776 899999999999999976522 22222222333 3359998763322 2356677777767666
Q ss_pred CEEE
Q 023974 208 ARVV 211 (274)
Q Consensus 208 Grlv 211 (274)
+.++
T Consensus 73 ~iv~ 76 (258)
T PF02153_consen 73 AIVT 76 (258)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 5554
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=4 Score=36.43 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=55.8
Q ss_pred CCCeEE-EEcCc--h---HHHHHHHHhCCCcEEEEeCcHHH---HHHHHHhCCCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISS--E---EFVDRVVESSPSLLLVVHDSLFV---LAGIKEKYDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGT--G---~l~~~L~~~~~~~V~gVD~S~~M---L~~Ar~k~~~v~~~~gDae~LP----------f~~~ 176 (274)
.+..|| .|.++ | .++..|++.+ .+|+.+|.+.+. ++..++..+.+.++++|+.+.. ...+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 356788 88654 3 3344555555 488888887543 3444444455556777865432 1226
Q ss_pred CccEEEecccCcCC---------CCH---HHH-----------HHHHHHhcCCCCEEEE
Q 023974 177 PLDVVFLYFLPAMP---------FPL---DQV-----------FETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~---------~d~---~~a-----------l~el~RvLKPGGrlvI 212 (274)
..|+++.+.+.... .+. ++. .+.+.+.++.+|+++.
T Consensus 88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~ 146 (258)
T PRK07533 88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLT 146 (258)
T ss_pred CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEE
Confidence 78999988664321 122 222 2455666777898866
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.2 Score=41.17 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=53.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--------CceE--------------EEeeccCCC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--------TVKC--------------WQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--------~v~~--------------~~gDae~LP 172 (274)
.+|- ||+|+ | .++..++..+ .+|+.+|.+++-++.++++.. ...+ ...|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~--- 79 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA--- 79 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH---
Confidence 3678 99986 3 3444555555 489999999998888765421 1111 122221
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
..-..-|+|+.+. +-...-...+++++...++++-.|+.
T Consensus 80 ~a~~~aDlVieav-pe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 EAVKDADLVIEAV-PEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred HHhcCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1124568888763 32222246778888888877765544
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.8 Score=35.67 Aligned_cols=84 Identities=7% Similarity=-0.060 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-ee-ccCCCCCC
Q 023974 100 EHIQRIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GE-LIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gD-ae~LPf~~ 175 (274)
++..|+.---+...+ -.+.+|+ ||.+-|+-+.+.+-++...|+++..++.+.+..++.......+. |- -.+++-.=
T Consensus 11 ~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y 90 (156)
T PHA01634 11 ECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEY 90 (156)
T ss_pred cchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccC
Confidence 455566544333322 2457999 99999999988887877899999999999999988544322211 00 01234344
Q ss_pred CCccEEEe
Q 023974 176 GPLDVVFL 183 (274)
Q Consensus 176 ~sFD~V~~ 183 (274)
++||+.++
T Consensus 91 ~~~Di~~i 98 (156)
T PHA01634 91 EDVDIFVM 98 (156)
T ss_pred CCcceEEE
Confidence 66777664
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.2 Score=39.25 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCc
Q 023974 117 SSKVL-VSISS-EE-FVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 117 ~~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S 147 (274)
+.+|| +|||. |. ++..|++.+.++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899 99995 54 4555666665899999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.3 Score=37.14 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHH--HHHHHHHhCCCceEEEeeccCCCC----------CCCCcc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLF--VLAGIKEKYDTVKCWQGELIYVPD----------KWGPLD 179 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~--ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD 179 (274)
.+.+|| .|++.| .++..|++.+ .+|++++-+.. ..+..++....+.++.+|+.+.-. ..+..|
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 82 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG-ADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID 82 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 356888 777554 2334444445 48999987652 222222222357788888765321 124689
Q ss_pred EEEecccC
Q 023974 180 VVFLYFLP 187 (274)
Q Consensus 180 ~V~~~f~l 187 (274)
+|+.+.+.
T Consensus 83 ~li~~ag~ 90 (248)
T TIGR01832 83 ILVNNAGI 90 (248)
T ss_pred EEEECCCC
Confidence 99987654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.3 Score=41.05 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=80.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+.+.++|+ ||||.=-++..+....+ ..++|.|++..|++...+- .++.+....|...=+ .....|+...-=.+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 45568999 99999998888776655 7999999999999887753 245677777876654 35778998865344
Q ss_pred cCCCCHH-HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 188 AMPFPLD-QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 188 ~~~~d~~-~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
+-++..+ .+--++...+. .=.++|+.|.- .+..-.+.+.. .-..++.+.+...||.+...+-.+.+
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtr--SL~gR~~gm~~------~y~~~fe~~~~~~~~~~~~~~~~~El 248 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTR--SLGGRNKGMEQ------TYSAWFEALAAERGWIVDRLTFGNEL 248 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------TTHHH------CHHHHHHHHCCTTCEEEEEEEETTEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEecccc--ccccCcccccc------CHHHHHHHhcccCCceeeeeecccce
Confidence 3332222 22233444442 34677776531 11111000000 11467788888888887776665553
|
|
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=88.21 E-value=1.8 Score=33.79 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred eEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHH
Q 023974 119 KVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 119 rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
+||+.||+|--+..+++ .|-+.++++.-++++...+..++....+.+|+|+++ + ...--+.
T Consensus 1 kIl~~Cg~G~sTS~~~~-------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~--P----qv~~~~~ 61 (96)
T cd05564 1 KILLVCSAGMSTSILVK-------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG--P----QVRYMLD 61 (96)
T ss_pred CEEEEcCCCchHHHHHH-------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC--h----hHHHHHH
Confidence 36799999986665533 244555555445777777777776556779999875 2 2233455
Q ss_pred HHHHhc-CCCCEEEEEc
Q 023974 199 TLANRC-SPGARVVISH 214 (274)
Q Consensus 199 el~RvL-KPGGrlvIs~ 214 (274)
++.+.+ +.|-.+.+.+
T Consensus 62 ~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 62 EVKKKAAEYGIPVAVID 78 (96)
T ss_pred HHHHHhccCCCcEEEcC
Confidence 555433 3455555543
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.6 Score=34.48 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHhCCC-CCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEeeccCCCCCCCCcc
Q 023974 106 DQIISAGEI-DESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 106 ~~ll~~~~~-~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~gDae~LPf~~~sFD 179 (274)
...++..++ ..+.+|+ +|||. ..++..|.+.+...|+.+|.+++-++...+++.. +.....|..++ -+..|
T Consensus 7 ~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D 83 (155)
T cd01065 7 VRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL---LAEAD 83 (155)
T ss_pred HHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc---cccCC
Confidence 344444444 4467899 99874 2334444443325799999998766665544432 11222232222 36789
Q ss_pred EEEeccc
Q 023974 180 VVFLYFL 186 (274)
Q Consensus 180 ~V~~~f~ 186 (274)
+|+++-.
T Consensus 84 vvi~~~~ 90 (155)
T cd01065 84 LIINTTP 90 (155)
T ss_pred EEEeCcC
Confidence 9998743
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.5 Score=40.19 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=76.9
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----------C------------CceEEEeeccCCCC
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----------D------------TVKCWQGELIYVPD 173 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----------~------------~v~~~~gDae~LPf 173 (274)
+|- ||+|+ +.++..++..+ ..|+++|.+++.++.++++. . +++ ...|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH---
Confidence 677 99986 45566666655 48999999999997655321 1 111 1223222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--------------------cccc
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--------------------DVIV 233 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--------------------~~si 233 (274)
-+..|+|+.+.-. ...-..++++++.+.++|+..+ ++...+- .+.++..... ++..
T Consensus 80 -~~~aDlVi~av~e-~~~~k~~~~~~l~~~~~~~~il-~s~ts~~-~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~ 155 (282)
T PRK05808 80 -LKDADLVIEAATE-NMDLKKKIFAQLDEIAKPEAIL-ATNTSSL-SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIR 155 (282)
T ss_pred -hccCCeeeecccc-cHHHHHHHHHHHHhhCCCCcEE-EECCCCC-CHHHHHHhhCCCcceEEeeccCCcccCccEEEeC
Confidence 2557999876332 2223458999999999998766 4433321 1222221110 0000
Q ss_pred ccCC---CHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 234 SDLP---DQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 234 ~~fp---s~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..-- +.+.+..+++..|...+...|.+++
T Consensus 156 g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~ 187 (282)
T PRK05808 156 GLATSDATHEAVEALAKKIGKTPVEVKNAPGF 187 (282)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEecCccCh
Confidence 1111 2345667888999887777666554
|
|
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.19 E-value=18 Score=33.10 Aligned_cols=96 Identities=18% Similarity=0.120 Sum_probs=53.2
Q ss_pred HHhCCCCCCCeEEE-EcC-chHHHHHHHHhCCCcEEEE--eCcHHHHHHHHHhCCCceEE---Eeec----cCCCCCCCC
Q 023974 109 ISAGEIDESSKVLV-SIS-SEEFVDRVVESSPSLLLVV--HDSLFVLAGIKEKYDTVKCW---QGEL----IYVPDKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVLv-GcG-TG~l~~~L~~~~~~~V~gV--D~S~~ML~~Ar~k~~~v~~~---~gDa----e~LPf~~~s 177 (274)
.....+.++++||| |+| .|..+..+++....+|+.+ +-+.+-++.+++ +. ++.+ ..|. ..+. ....
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~l~~~~-~~~~ 233 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE-LG-ADAVNGGEEDLAELVNEIT-DGDG 233 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH-hC-CcccCCCcCCHHHHHHHHc-CCCC
Confidence 34456788899994 432 1334444555433567666 334444554443 22 1111 1111 1111 2356
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-..+- ...+....+.|+++|+++..
T Consensus 234 vd~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 234 ADVVIECSGA------VPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCEEEECCCC------hHHHHHHHHHhhcCCEEEEE
Confidence 8998865321 35788889999999999963
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=88.17 E-value=3.4 Score=40.57 Aligned_cols=95 Identities=11% Similarity=0.099 Sum_probs=51.9
Q ss_pred CCCCCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc-cCc
Q 023974 113 EIDESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF-LPA 188 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~ 188 (274)
+..++.+|+ +|||. |..+.. |...+..+|+.+|-+.+..+...++++.. .+ +.++++..-..+|+|+++- ..+
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i--~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AV--KFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-Ee--eHHHHHHHHhhCCEEEECCCCCC
Confidence 445678999 99976 444333 33334368999999988765444454431 11 2223333335789999773 344
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+-+.+ .++.+.+ -++++.++|
T Consensus 253 ~ii~~e-~l~~~~~-~~~~~~~vi 274 (417)
T TIGR01035 253 PIVSKE-DVERALR-ERTRPLFII 274 (417)
T ss_pred ceEcHH-HHHHHHh-cCCCCeEEE
Confidence 443433 3333211 123455666
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.1 Score=35.20 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=44.5
Q ss_pred CeEEEEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023974 118 SKVLVSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 118 ~rVLvGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
.+||+.||+|--+..++. .|-+.++++.-++++...+..+++.....+|+|+.+=-+ +--+
T Consensus 4 ~~ILl~C~~G~sSS~l~~-------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi------~~~~ 64 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVN-------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQV------AYML 64 (95)
T ss_pred cEEEEECCCchhHHHHHH-------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchH------HHHH
Confidence 478899999966655532 355666665556777777777776555678999876222 3334
Q ss_pred HHHHHhcCC
Q 023974 198 ETLANRCSP 206 (274)
Q Consensus 198 ~el~RvLKP 206 (274)
.++...+.+
T Consensus 65 ~~i~~~~~~ 73 (95)
T TIGR00853 65 PDLKKETDK 73 (95)
T ss_pred HHHHHHhhh
Confidence 455444544
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=5.8 Score=36.97 Aligned_cols=90 Identities=9% Similarity=0.093 Sum_probs=50.4
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+|+ ||+|. | .++..|.+.+ ..|+.++-++. +..+++. .+..+....+..-+.....+|+|+.+- .
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav-K 81 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL-K 81 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe-c
Confidence 5799 99987 4 4455565555 47777766652 2222221 111111111111222346799998762 2
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+ +..++++.+...++|++.++..
T Consensus 82 ~~--~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 82 TT--ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred CC--ChHhHHHHHhhhcCCCCEEEEe
Confidence 11 3467888888889999987664
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.9 Score=39.28 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=62.2
Q ss_pred eEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh------------CCCceEEEeeccC-CC--CCCCCccEE
Q 023974 119 KVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK------------YDTVKCWQGELIY-VP--DKWGPLDVV 181 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k------------~~~v~~~~gDae~-LP--f~~~sFD~V 181 (274)
... ||||=|-++..|+...| ..++|+++--..-+-.++| ++++......+.. +| |..+..+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 467 99999999999988888 8899996655444433333 4556666555544 44 344444444
Q ss_pred Eeccc-CcCCCC-------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 182 FLYFL-PAMPFP-------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 182 ~~~f~-l~~~~d-------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+..|- +|+... -...+.|.+=+|++||.++..+.
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 44331 222111 12567888999999999988643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.5 Score=36.87 Aligned_cols=68 Identities=10% Similarity=-0.037 Sum_probs=43.8
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC----------CCCCccEE
Q 023974 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD----------KWGPLDVV 181 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD~V 181 (274)
+.+|| .|++.| ++..++ +++ .+|++++-+++=++...+ .++.++++|+.+... ..+.+|+|
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G-~~V~~~~r~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQG-YTVYGAARRVDKMEDLAS--LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh--CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 45788 776443 444443 334 589999988876654433 247888888866431 12478999
Q ss_pred EecccCc
Q 023974 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 79 i~~ag~~ 85 (273)
T PRK06182 79 VNNAGYG 85 (273)
T ss_pred EECCCcC
Confidence 9887654
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.37 Score=46.01 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=83.9
Q ss_pred CCccccccccccccccccccccCCccchhHHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHH-HHHHhCCCcEEEEeCcH
Q 023974 72 EGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEI-DESSKVL-VSISSEEFVD-RVVESSPSLLLVVHDSL 148 (274)
Q Consensus 72 ~~~~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~-~L~~~~~~~V~gVD~S~ 148 (274)
.|=+.++. ++ |...||...+..++|. +....+.+.. ..++.|. +=+|-|.++. .|.+.+...|.|.|..+
T Consensus 156 ~gWV~~v~-NG-I~~~~d~t~~MFS~GN-----~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp 228 (351)
T KOG1227|consen 156 LGWVKHVQ-NG-ITQIWDPTKTMFSRGN-----IKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP 228 (351)
T ss_pred ccceeehh-cC-eEEEechhhhhhhcCc-----HHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH
Confidence 33444443 24 5556999999999983 3333333333 2345666 9999999988 78777778999999999
Q ss_pred HHHHHHHHhCC--Cc----eEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCE
Q 023974 149 FVLAGIKEKYD--TV----KCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGAR 209 (274)
Q Consensus 149 ~ML~~Ar~k~~--~v----~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGr 209 (274)
.-++..|+... ++ ....||- ..|-.+...|-|.....+ .-++-.--..++|||.|-
T Consensus 229 ~svEaLrR~~~~N~V~~r~~i~~gd~-R~~~~~~~AdrVnLGLlP----Sse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 229 WSVEALRRNAEANNVMDRCRITEGDN-RNPKPRLRADRVNLGLLP----SSEQGWPTAIKALKPEGG 290 (351)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhccc-cccCccccchheeecccc----ccccchHHHHHHhhhcCC
Confidence 99998887643 33 3445774 445567888888765443 445555556667888655
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=2.5 Score=37.19 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~ 176 (274)
.+.+|| .|. +|.++..+ ++++ .+|+++|-+++.++...++. .++.++++|+.+.. ..-+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 356888 774 45454444 4444 58999999988776555443 23667788876522 1124
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68999988654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=4.6 Score=34.90 Aligned_cols=69 Identities=12% Similarity=0.024 Sum_probs=43.5
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCC-----C-----CCCCc
Q 023974 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVP-----D-----KWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LP-----f-----~~~sF 178 (274)
+.+|| +| |||.++..++ +.+ .+|++++-+++-++...+.. ..+.++++|+.+.- + .-+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46788 77 4665655544 334 48999998887665554433 45778888876421 0 11478
Q ss_pred cEEEecccC
Q 023974 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 84 d~vi~~ag~ 92 (237)
T PRK07326 84 DVLIANAGV 92 (237)
T ss_pred CEEEECCCC
Confidence 999977543
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=5.1 Score=36.63 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=51.7
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHH--HHHH----HHHhCCCceEEEeeccCCC----------CCC
Q 023974 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLF--VLAG----IKEKYDTVKCWQGELIYVP----------DKW 175 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~--ML~~----Ar~k~~~v~~~~gDae~LP----------f~~ 175 (274)
+.+|| .|++. -++.. |++.+ .+|+.++.+.+ -++. .++...++.++++|+.+.. ..-
T Consensus 55 ~k~vlITGas~-gIG~~~a~~l~~~G-~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADS-GIGRATAIAFAREG-ADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCC-cHHHHHHHHHHHcC-CEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 56788 77544 34444 44444 47777665432 2222 2222234667788876532 112
Q ss_pred CCccEEEecccCcCC----C--CH--------------HHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMP----F--PL--------------DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~----~--d~--------------~~al~el~RvLKPGGrlvIs 213 (274)
+..|+++.+.+.... . +. -..++.+.+.+++||+++..
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 468999988764321 1 11 12445556667889998873
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=6.2 Score=34.76 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC--CceEEEeeccCCC----------CCCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD--TVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~--~v~~~~gDae~LP----------f~~~ 176 (274)
+.++| .|++.| .++..|++.+ .+|+.++-+.+-++...++ .+ ++.++++|+.+.. ..-+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788 776543 2333444445 4899999988877665543 22 4667788875421 1125
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
.+|+|+.+.+.
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 78999988664
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=87.59 E-value=4.8 Score=35.39 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=43.7
Q ss_pred CCeEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCCC
Q 023974 117 SSKVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~s 177 (274)
+..+| .|+.+| ++. .|++.+ .+|+.+|-+.+.++.+.+.. .++.++++|+.+.. ...+.
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 34677 665443 444 444445 58999999887776655432 35677888886532 11256
Q ss_pred ccEEEecccC
Q 023974 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
.|+|+.+.+.
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 8999988654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.56 E-value=4.1 Score=36.66 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=43.9
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----C------CCCCccE
Q 023974 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----D------KWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f------~~~sFD~ 180 (274)
+.+|| .|++.| ++.. |++++ .+|++++-+++-++..++ .++.++.+|+.+.- + ..+..|+
T Consensus 4 ~k~vlItGasgg-iG~~la~~l~~~G-~~Vi~~~r~~~~~~~l~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 4 KRSILITGCSSG-IGAYCARALQSDG-WRVFATCRKEEDVAALEA--EGLEAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH--CCceEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 45788 776543 4444 44444 589999999888776554 25777888876521 0 1247899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
|+.+.+.
T Consensus 80 li~~Ag~ 86 (277)
T PRK05993 80 LFNNGAY 86 (277)
T ss_pred EEECCCc
Confidence 9988654
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.4 Score=39.13 Aligned_cols=100 Identities=10% Similarity=0.232 Sum_probs=63.3
Q ss_pred CeEE-EEcCc--hHHHHHHHHhC--C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 118 SKVL-VSISS--EEFVDRVVESS--P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~--~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
.+|. ||||. +.++..|.+.+ + .+|++.|.+++-++.+.+++. ++. ..|..++. ..-|+|+.+.-+ .
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-~~~-~~~~~e~~---~~aDiIiLavkP---~ 74 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-ITI-TTNNNEVA---NSADILILSIKP---D 74 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-cEE-eCCcHHHH---hhCCEEEEEeCh---H
Confidence 3678 99997 45556666554 2 579999999988888776664 332 23333331 245999987655 3
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
+.+.+++++...+++ |.++|+-..| -.++.+.+.
T Consensus 75 ~~~~vl~~l~~~~~~-~~lvISi~AG-i~i~~l~~~ 108 (272)
T PRK12491 75 LYSSVINQIKDQIKN-DVIVVTIAAG-KSIKSTENE 108 (272)
T ss_pred HHHHHHHHHHHhhcC-CcEEEEeCCC-CcHHHHHHh
Confidence 457888888877765 5677764433 234555443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.8 Score=40.12 Aligned_cols=55 Identities=15% Similarity=-0.018 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
-++++|... -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++-.+.|++|...
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 456666554 36889999 9999998877776666 4999999999999999999753
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=87.24 E-value=2 Score=43.24 Aligned_cols=95 Identities=12% Similarity=-0.014 Sum_probs=56.5
Q ss_pred HHHHHhCCC-CCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 106 DQIISAGEI-DESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 106 ~~ll~~~~~-~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+++..+. -.|.+|+ +|+|. |..++..++....+|+++|.++.-...|.. .+++. .+.+++ -...|+|+
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~--~G~~~--~~leel---l~~ADIVI 314 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM--EGYQV--VTLEDV---VETADIFV 314 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh--cCcee--ccHHHH---HhcCCEEE
Confidence 445554332 3677899 99997 544444444322589999888765444433 23322 223222 24689999
Q ss_pred ecccCcCCCCHHHHH-HHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVF-ETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al-~el~RvLKPGGrlvIs 213 (274)
..-+-.+ ++ ++....+|||+.|+-.
T Consensus 315 ~atGt~~------iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 315 TATGNKD------IITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ECCCccc------ccCHHHHhccCCCcEEEEc
Confidence 8744322 33 3666779999999874
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.84 E-value=7.7 Score=36.62 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=62.6
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE--------EeeccCCCCCCCCccEEEecccC
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW--------QGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~--------~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+|+ +|+|. |.++.+|.+.+ ..|+.+--++. ++..+++ ++... ......-+.....+|+|+..- =
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~--GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v-K 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK--GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV-K 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC--CeEEecCCCccccccccccChhhcCCCCEEEEEe-c
Confidence 688 99997 45556666655 46666666655 7777775 21111 111222234445899999762 1
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
. .+.+++++.+.+.++|...+++.+. |-+..+.+.+.+
T Consensus 77 a--~q~~~al~~l~~~~~~~t~vl~lqN-G~g~~e~l~~~~ 114 (307)
T COG1893 77 A--YQLEEALPSLAPLLGPNTVVLFLQN-GLGHEEELRKIL 114 (307)
T ss_pred c--ccHHHHHHHhhhcCCCCcEEEEEeC-CCcHHHHHHHhC
Confidence 1 2668999999999999998887642 233444444333
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=86.75 E-value=7.1 Score=37.87 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCch----HHHHHHHHh--C-C-CcEEEEeC----cHHHHHHHHHhCC------C--ce
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSE----EFVDRVVES--S-P-SLLLVVHD----SLFVLAGIKEKYD------T--VK 162 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG----~l~~~L~~~--~-~-~~V~gVD~----S~~ML~~Ar~k~~------~--v~ 162 (274)
....+++.+.-...=+|+ +|.|.| .+...|+.+ + | -+||||+. +..-|+.+.++.. + ++
T Consensus 98 aNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 98 ANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred hhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 445777777666666889 999998 456677665 2 3 79999999 8888877776532 2 33
Q ss_pred EEE---eeccCC-----CCCCCCccEEEecccCcCCC-------CHHHHHHHHHHhcCCCCEEEE
Q 023974 163 CWQ---GELIYV-----PDKWGPLDVVFLYFLPAMPF-------PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 163 ~~~---gDae~L-----Pf~~~sFD~V~~~f~l~~~~-------d~~~al~el~RvLKPGGrlvI 212 (274)
|.. .+++++ -..++..=+|-+.+.+|+.. ++...+=...|-|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 333 344443 22223322333446667654 345556667789999866555
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=86.73 E-value=2.4 Score=38.75 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=56.1
Q ss_pred eEE-EEcCc--hHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 119 KVL-VSISS--EEFVDRVVESSP---SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+|. ||||. +.++..|.+.+. ..|++.|.+++-++.+.++++++... .|..++ -...|+|+.+.- ..+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~---~~~aDiVilav~---p~~ 74 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEV---ISQSDLIFICVK---PLD 74 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHH---HHhCCEEEEecC---HHH
Confidence 466 99887 345566655541 47999999998887777776555432 233332 135699987752 234
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 023974 193 LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs 213 (274)
..++++++...+++|. ++|+
T Consensus 75 ~~~vl~~l~~~l~~~~-~iis 94 (273)
T PRK07680 75 IYPLLQKLAPHLTDEH-CLVS 94 (273)
T ss_pred HHHHHHHHHhhcCCCC-EEEE
Confidence 5678888877787766 5553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=15 Score=34.19 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc------eE-E-E--eeccCCCCCCCCccEEEecc
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV------KC-W-Q--GELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v------~~-~-~--gDae~LPf~~~sFD~V~~~f 185 (274)
+|. ||+|. | .++..|.+.+ .+|+.+|.++. .+..+++.-.+ +. + . ..+..-+.....+|+|+.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 688 99986 3 4555665655 48999998753 34444321111 00 0 0 00011112235789998764
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
- ..+.+++++++...++++-.++.
T Consensus 82 k---~~~~~~~~~~l~~~~~~~~iii~ 105 (341)
T PRK08229 82 K---SAATADAAAALAGHARPGAVVVS 105 (341)
T ss_pred c---CcchHHHHHHHHhhCCCCCEEEE
Confidence 2 12457888999888887665443
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=5.9 Score=35.52 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=46.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC---------CCCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP---------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP---------f~~~s 177 (274)
.+.++| .|++.| .++..|++.+ .+|+.+|.+++=++.+.++. .++.++++|+.+.. ...+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 356778 777665 2344555555 58999999887766655432 25778888876632 01257
Q ss_pred ccEEEecccC
Q 023974 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
.|+++.+.+.
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8999988654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.3 Score=37.15 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LP----------f~~~s 177 (274)
.+.+|| .|++.| ++.. |++.+ .+|+.++-+++-++...+..+ .+..+++|+.+.- ..-+.
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARG-AKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456888 776554 4443 44444 589999999988877665543 2444557765421 11257
Q ss_pred ccEEEecccC
Q 023974 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
+|+|+.+.+.
T Consensus 86 id~vI~nAG~ 95 (296)
T PRK05872 86 IDVVVANAGI 95 (296)
T ss_pred CCEEEECCCc
Confidence 9999988765
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.54 E-value=5.1 Score=36.22 Aligned_cols=93 Identities=18% Similarity=0.146 Sum_probs=56.6
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccCCCCCCCCccEEEeccc
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~LPf~~~sFD~V~~~f~ 186 (274)
..+.++++|| .|. +.|..+..+++....+|++++-+++-.+.+++ +....++..+ .+.+-. ...+|+|+.+.+
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~d~v~~~~g 235 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKE-LGADYVIDGSKFSEDVKK-LGGADVVIELVG 235 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-cCCcEEEecHHHHHHHHh-ccCCCEEEECCC
Confidence 5678889999 775 33555544444433688999888887777744 2222222221 011111 125899886644
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
. ..+.++.+.++++|+++..
T Consensus 236 ~-------~~~~~~~~~~~~~g~~v~~ 255 (332)
T cd08259 236 S-------PTIEESLRSLNKGGRLVLI 255 (332)
T ss_pred h-------HHHHHHHHHhhcCCEEEEE
Confidence 2 2367778889999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.50 E-value=6.3 Score=34.17 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=43.0
Q ss_pred CCeEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC----------CCCCc
Q 023974 117 SSKVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf----------~~~sF 178 (274)
+.+|| .|+ ||.++. .|++++ .+|++++-+++=++...... .++.++++|+.+... ..+.+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 45788 655 343444 444445 48999999987665554433 246788888765331 11368
Q ss_pred cEEEecccC
Q 023974 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 83 d~vi~~ag~ 91 (251)
T PRK07231 83 DILVNNAGT 91 (251)
T ss_pred CEEEECCCC
Confidence 999987654
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.42 E-value=6.6 Score=41.36 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=81.7
Q ss_pred CeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------------------CceEEEeeccCCC
Q 023974 118 SKVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------------------TVKCWQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------------------~v~~~~gDae~LP 172 (274)
.+|- ||+|| |. ++..++..+ ..|+-+|.+++.|+.++++.. .+++ ..|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH--
Confidence 4788 99998 43 333444445 599999999999988765421 0111 122222
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC-ChhHHHHH----------HhhCc-------ccccc
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ-GREALQKQ----------RKQFP-------DVIVS 234 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~-gr~~l~~~----------~~~~~-------~~si~ 234 (274)
-...|+|+=+ .+-..+-..++|+++-++++|+-.|.-.+.. ....+.+. |...+ +++..
T Consensus 390 --~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 390 --FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred --hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCC
Confidence 2567888744 5555555669999999999998766553221 11112211 11111 11111
Q ss_pred cCCC---HHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 235 DLPD---QMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 235 ~fps---~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.--+ .+.+.+++++.|...+...|.++|.
T Consensus 467 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv 498 (715)
T PRK11730 467 EKTSDETIATVVAYASKMGKTPIVVNDCPGFF 498 (715)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCcCchh
Confidence 1122 3455668889999888887777663
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.38 E-value=2.8 Score=37.74 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=53.2
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCCC
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~~ 191 (274)
+++ +|||. | .++..|.+.+ ..|++||..++-+++..........++||+.+.- ..-..+|++++.-+- .
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~---d 77 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN---D 77 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC---C
Confidence 577 99997 3 4455555555 4999999999988875554445777889987632 234689999875322 2
Q ss_pred CHHHHHHHHHHh
Q 023974 192 PLDQVFETLANR 203 (274)
Q Consensus 192 d~~~al~el~Rv 203 (274)
...-++..++..
T Consensus 78 ~~N~i~~~la~~ 89 (225)
T COG0569 78 EVNSVLALLALK 89 (225)
T ss_pred HHHHHHHHHHHH
Confidence 334455555544
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.31 E-value=5.3 Score=34.77 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=44.0
Q ss_pred CCCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC-----CC-----CC
Q 023974 116 ESSKVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP-----DK-----WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP-----f~-----~~ 176 (274)
...++| .| |||.++..+ ++++ .+|++++-+++-++...++ ..++.++++|+.+.. +. -+
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 345777 66 455555544 4444 5899999987655444332 235778899987643 11 14
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 68999987664
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=86.21 E-value=6.5 Score=35.48 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=54.7
Q ss_pred CCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-c----cCCCCCCCCccEEEecccC
Q 023974 116 ESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-L----IYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-a----e~LPf~~~sFD~V~~~f~l 187 (274)
.+++|| .|+ +.|.++..+++....+|+.++.+++-++.+++ +..-.++... . ... ...+.+|+|+-..+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~~- 222 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKS-LGASEVLDREDLLDESKKP-LLKARWAGAIDTVG- 222 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCcEEEcchhHHHHHHHH-hcCCCccEEEECCc-
Confidence 346889 775 23555555655433579999999998888854 4321222111 0 001 11245898885432
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+.+..+.|+++|+++..
T Consensus 223 ------~~~~~~~~~~l~~~g~~v~~ 242 (325)
T cd05280 223 ------GDVLANLLKQTKYGGVVASC 242 (325)
T ss_pred ------hHHHHHHHHhhcCCCEEEEE
Confidence 13678888899999999873
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=86.16 E-value=2.7 Score=32.84 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred eEE-EEcCch-H-HHHHHHHhCC-CcEEE-EeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 119 KVL-VSISSE-E-FVDRVVESSP-SLLLV-VHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 119 rVL-vGcGTG-~-l~~~L~~~~~-~~V~g-VD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
||. ||+|.. . ....+.+..+ ..++| +|.+++..+.+.+++.- . .-.|.+++.. +...|+|+++--. . ..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-~-~~~~~~~ll~-~~~~D~V~I~tp~-~--~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-P-VYTDLEELLA-DEDVDAVIIATPP-S--SH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-E-EESSHHHHHH-HTTESEEEEESSG-G--GH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-c-chhHHHHHHH-hhcCCEEEEecCC-c--ch
Confidence 677 999774 2 2334444434 46654 59999999888777753 3 5566777653 3579999876322 1 12
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 194 DQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+.. .+.|+-|-.+++..|..
T Consensus 76 ~~~~---~~~l~~g~~v~~EKP~~ 96 (120)
T PF01408_consen 76 AEIA---KKALEAGKHVLVEKPLA 96 (120)
T ss_dssp HHHH---HHHHHTTSEEEEESSSS
T ss_pred HHHH---HHHHHcCCEEEEEcCCc
Confidence 2233 33466777888877754
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=86.10 E-value=13 Score=32.20 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=59.2
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ceEEEe---ec----cCCCCCCCC
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VKCWQG---EL----IYVPDKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~~~~g---Da----e~LPf~~~s 177 (274)
....+.++++|| .|. +.|.++..+++....+|++++.+++.++.+++ .+- -..+.. +. .++ .....
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~ 175 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRE-LGIPDDHIFSSRDLSFADEILRA-TGGRG 175 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCChhheeeCCCccHHHHHHHH-hCCCC
Confidence 445778899999 773 34666666666533589999999999998853 331 111111 11 011 12346
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+ ...+....+.|+++|+++..
T Consensus 176 ~d~vi~~~~-------~~~~~~~~~~l~~~g~~v~~ 204 (288)
T smart00829 176 VDVVLNSLA-------GEFLDASLRCLAPGGRFVEI 204 (288)
T ss_pred cEEEEeCCC-------HHHHHHHHHhccCCcEEEEE
Confidence 888885433 13566677889999999863
|
Enoylreductase in Polyketide synthases. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.10 E-value=1.6 Score=37.89 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=54.9
Q ss_pred eEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------c----------e-EEEeeccCCCCC
Q 023974 119 KVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------V----------K-CWQGELIYVPDK 174 (274)
Q Consensus 119 rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------v----------~-~~~gDae~LPf~ 174 (274)
+|- ||+|+ |.- +..++..+ ..|+-+|.+++.++.++++... + . -...|.+++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH---
Confidence 466 88888 433 33444445 5999999999999888764211 0 1 123454443
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ..|+|+=+ .+-..+-.+++++++.+++.|+-.|.-.
T Consensus 77 ~-~adlViEa-i~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 77 V-DADLVIEA-IPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp C-TESEEEE--S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred h-hhheehhh-ccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 2 67888844 4445445578999999999998887764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.86 E-value=3.6 Score=38.07 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=59.8
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH--h-------CC-CceEEE---eeccCCCCCCCC-ccE
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE--K-------YD-TVKCWQ---GELIYVPDKWGP-LDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~--k-------~~-~v~~~~---gDae~LPf~~~s-FD~ 180 (274)
..-+|| +|.|||-.+...+......|+--|...-+...... + +. .+.... +++...-+.... ||+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 345799 99999954444333233567777776665433222 1 22 233322 333222233344 999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+++-.+-....++.+..-++..|-.+|.+.+...
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99996665666677788888888999996655533
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=85.85 E-value=2.2 Score=41.66 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=66.8
Q ss_pred CCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCCC-CCCCCccEEEec-
Q 023974 117 SSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYVP-DKWGPLDVVFLY- 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~LP-f~~~sFD~V~~~- 184 (274)
+-+|| .=+|||.=+.+++.. .. .+|++.|+|++.++.++++. . .++..+.||..+- ...+.||+|=.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899 889999887777666 44 89999999999999998762 2 2567788987754 357899999654
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+ .|...+....+.+|.||.|.|+-+
T Consensus 130 fG-----Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 FG-----SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp SS-------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-----CccHhHHHHHHHhhcCCEEEEecc
Confidence 44 355677788888999999999643
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=6.1 Score=34.81 Aligned_cols=68 Identities=7% Similarity=0.061 Sum_probs=44.3
Q ss_pred CCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC----------CCCCCccE
Q 023974 117 SSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+.+|| .| |||.++..++ +++ .+|+.+|-+.+.++...++. .++.++++|+.+.. ...+..|+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45788 66 4444555444 444 58999999999887766554 35777888875421 11246899
Q ss_pred EEeccc
Q 023974 181 VFLYFL 186 (274)
Q Consensus 181 V~~~f~ 186 (274)
++.+.+
T Consensus 84 li~~ag 89 (257)
T PRK07067 84 LFNNAA 89 (257)
T ss_pred EEECCC
Confidence 987754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.9 Score=38.30 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=51.5
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHH-HHHHHHHh----CCCceEEEeeccCCCC----------CC
Q 023974 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLF-VLAGIKEK----YDTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~-ML~~Ar~k----~~~v~~~~gDae~LPf----------~~ 175 (274)
.+.+|| .|++. .++.. |++.+ .+|+.++.+.. .++...+. ..++.++.+|+.+... .-
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788 66544 44444 44444 58888877642 22222221 2346778888755221 11
Q ss_pred CCccEEEecccCcC----CC--C--------------HHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAM----PF--P--------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~----~~--d--------------~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+.+.+... .. + +-..++.+.+.++++|++++.
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 46899987755321 11 1 122334445556778888773
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.79 E-value=3.3 Score=38.16 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=54.3
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----------CC------------ceEEEeeccCCC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----------DT------------VKCWQGELIYVP 172 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----------~~------------v~~~~gDae~LP 172 (274)
.+|. ||+|+ | .++..++..+ ..|+..|.+++-++.+.++. .. +++ ..|.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHH--
Confidence 4688 99987 2 4455565555 48999999999888765321 10 111 233322
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
-...|+|+.+ .+-...-.+.+++++...++|+..++
T Consensus 81 --~~~aD~Viea-vpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 81 --LADCDLVIEA-ATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred --hcCCCEEEEc-CcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 2457988875 33222224577889999999987655
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.76 E-value=0.73 Score=44.84 Aligned_cols=102 Identities=9% Similarity=0.073 Sum_probs=69.3
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH----------hCCC----ceEEEeeccCCCCC-
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE----------KYDT----VKCWQGELIYVPDK- 174 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~----------k~~~----v~~~~gDae~LPf~- 174 (274)
.+.+.+|+-|. ==.|||.+....++-| +.|+|-|+.-.|+...|. +|+. +..+.+|...-|..
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 35678999999 5566666665555545 699999999999985432 2331 46678998887753
Q ss_pred CCCccEEEec--ccCcCCCC---------------------------H----HHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLY--FLPAMPFP---------------------------L----DQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~--f~l~~~~d---------------------------~----~~al~el~RvLKPGGrlvIs 213 (274)
...||+|+|- +++|--.. + ...+.=.+|+|+-|||+++-
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 5799999986 55542110 0 11233347899999999984
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=85.75 E-value=2.5 Score=31.86 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=48.8
Q ss_pred CchHHHHHHHH----hC--CCcEEEE-eCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHH
Q 023974 125 SSEEFVDRVVE----SS--PSLLLVV-HDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 125 GTG~l~~~L~~----~~--~~~V~gV-D~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al 197 (274)
|+|.++..|++ .+ +.+|+.+ +.+++-++..+++++ +.+...+.+++- ..-|+|+.+.-++. ..+++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~---~~advvilav~p~~---~~~v~ 78 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-VQATADDNEEAA---QEADVVILAVKPQQ---LPEVL 78 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-TEEESEEHHHHH---HHTSEEEE-S-GGG---HHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-cccccCChHHhh---ccCCEEEEEECHHH---HHHHH
Confidence 55556555543 44 2588845 999999999998887 333332333321 25799998866644 47788
Q ss_pred HHHHHhcCCCCEE
Q 023974 198 ETLANRCSPGARV 210 (274)
Q Consensus 198 ~el~RvLKPGGrl 210 (274)
+++ ..+.+|..+
T Consensus 79 ~~i-~~~~~~~~v 90 (96)
T PF03807_consen 79 SEI-PHLLKGKLV 90 (96)
T ss_dssp HHH-HHHHTTSEE
T ss_pred HHH-hhccCCCEE
Confidence 888 666665544
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.72 E-value=4.1 Score=36.88 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=75.5
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEc-CchHHHHHHHHhCCCcEEEEeCcHHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSI-SSEEFVDRVVESSPSLLLVVHDSLFVLAGI 154 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGc-GTG~l~~~L~~~~~~~V~gVD~S~~ML~~A 154 (274)
+..|+. -.+-||..+.+ ++...+.++ +.....++++|| +|. =||.+++.++... ++|+.+|+-+.|
T Consensus 12 vkT~~s-~~~v~Dvv~eI---~~~K~~ai~---~~~~~~E~~~vli~G~YltG~~~a~~Ls~~-~~vtv~Di~p~~---- 79 (254)
T COG4017 12 VKTIDS-KTRVVDVVNEI---AKKKYQAIR---DFLEGEEFKEVLIFGVYLTGNYTAQMLSKA-DKVTVVDIHPFM---- 79 (254)
T ss_pred HHHHhc-CCcHHHHHHHH---HHHHHHHhh---hhhcccCcceEEEEEeeehhHHHHHHhccc-ceEEEecCCHHH----
Confidence 334443 34558887775 322223333 334556778999 886 4788877776543 699999999988
Q ss_pred HHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 155 KEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 155 r~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
|.-.| +++|..+ +-+..+.+|+|+=.-++.-. +|+ .|+. +.| |.|++-+|.|
T Consensus 80 r~~lp~~v~Fr~~----~~~~~G~~DlivDlTGlGG~-~Pe-~L~~----fnp-~vfiVEdP~g 132 (254)
T COG4017 80 RGFLPNNVKFRNL----LKFIRGEVDLIVDLTGLGGI-EPE-FLAK----FNP-KVFIVEDPKG 132 (254)
T ss_pred HhcCCCCccHhhh----cCCCCCceeEEEeccccCCC-CHH-HHhc----cCC-ceEEEECCCC
Confidence 33333 5777665 44556889999977677665 443 3443 777 5677777765
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=85.66 E-value=4.5 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=21.2
Q ss_pred eEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCc
Q 023974 119 KVL-VSISS-EE-FVDRVVESSPSLLLVVHDS 147 (274)
Q Consensus 119 rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S 147 (274)
+|| +|||. |. ++..|++.+.++++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 578 99994 54 5556666665789999876
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.64 E-value=2.8 Score=38.61 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=53.9
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce----------E-EEeeccCCCCCCCCccEEEec
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK----------C-WQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~----------~-~~gDae~LPf~~~sFD~V~~~ 184 (274)
+|. ||+|. +.++..|++.+ ..|+.+|.+++.++..+++..... . ...|.++ .-...|+|+.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE---ALADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH---HHhCCCEEEEe
Confidence 577 98876 34455555555 489999999998887776531111 1 1112211 12457999876
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.-. ...+.+++++...++||..++.
T Consensus 79 v~~---~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 79 VPS---QALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred CCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence 433 2457888888888888765543
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=3.6 Score=36.41 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=45.4
Q ss_pred CeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCC----------CCCCCccE
Q 023974 118 SKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 118 ~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.+|| .|+.+| .++..|++.+ .+|+.+|-..+.++...+..+ ++.++++|+.+.. ...+..|+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 4788 776543 2333444445 489999999988877666543 5778888886532 11245899
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 82 lv~~ag~ 88 (257)
T PRK07024 82 VIANAGI 88 (257)
T ss_pred EEECCCc
Confidence 9988654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.8 Score=38.07 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=56.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------c----------eE-EEeeccCCCC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------V----------KC-WQGELIYVPD 173 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------v----------~~-~~gDae~LPf 173 (274)
.+|- ||+|+ | .++..++..+ ..|+..|.+++.++.++++..+ + +. ...|.+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF-- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh--
Confidence 3777 99997 3 4444555555 5999999999999987654211 0 01 12333222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhc-CCCCEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRC-SPGARVVI 212 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvL-KPGGrlvI 212 (274)
...|+|+-+ .+-...-.+++++++.+++ +||..++-
T Consensus 83 --~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 83 --ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred --CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888855 5555545568889999999 67655544
|
|
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.52 E-value=14 Score=33.46 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=55.4
Q ss_pred hCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEec
Q 023974 111 AGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLY 184 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~ 184 (274)
...+.++++|| .|+. .|..+..+++....+|++++. ++..+.+++ +. +..+.....+.. ..++.+|+|+-.
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~d~vl~~ 210 (331)
T cd08273 134 AAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRE-LG-ATPIDYRTKDWLPAMLTPGGVDVVFDG 210 (331)
T ss_pred hcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHH-cC-CeEEcCCCcchhhhhccCCCceEEEEC
Confidence 35778899999 8862 345555555543357888886 777777754 33 211111111111 122468888854
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+ ...+.+..+.|+++|+++.
T Consensus 211 ~~-------~~~~~~~~~~l~~~g~~v~ 231 (331)
T cd08273 211 VG-------GESYEESYAALAPGGTLVC 231 (331)
T ss_pred Cc-------hHHHHHHHHHhcCCCEEEE
Confidence 32 1236777889999999986
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.50 E-value=10 Score=36.26 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc----CCC------------
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI----YVP------------ 172 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae----~LP------------ 172 (274)
..+.++++|| .|+ +.|.++..+++....++++++.+++-.+.+++ .....++.-+-+ .++
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRE-LGAEAVIDRNDFGHWGRLPDLNTQAPKEWTK 263 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCCEEecCCCcchhhccccccccccchhhh
Confidence 4677889999 887 23555555665433578889999988888876 432111111000 000
Q ss_pred ------------CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 173 ------------DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 173 ------------f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.....+|+|+-..+ ...+....+.|+++|+++..
T Consensus 264 ~~~~~~~~~~~~~~~~g~d~vld~~g-------~~~~~~~~~~l~~~G~~v~~ 309 (398)
T TIGR01751 264 SFKRFGKRIRELTGGEDPDIVFEHPG-------RATFPTSVFVCRRGGMVVIC 309 (398)
T ss_pred cchhHHHHHHHHcCCCCceEEEECCc-------HHHHHHHHHhhccCCEEEEE
Confidence 01245888876432 24577788899999999884
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=5 Score=35.44 Aligned_cols=94 Identities=9% Similarity=0.072 Sum_probs=51.2
Q ss_pred CCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCc----HHHHHHHHH----hCCCceEEEeeccCCCC----------
Q 023974 117 SSKVL-VSISSEEFVDRV----VESSPSLLLVVHDS----LFVLAGIKE----KYDTVKCWQGELIYVPD---------- 173 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S----~~ML~~Ar~----k~~~v~~~~gDae~LPf---------- 173 (274)
+.+|| .|++.| ++..+ ++.+ .+|+.++.+ .+-++...+ .-.++.++++|+.+...
T Consensus 8 ~k~vlItGa~~g-IG~~~a~~l~~~G-~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 8 GKVVLIAGGAKN-LGGLIARDLAAQG-AKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHCC-CcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 45788 776554 44444 4334 466666532 233332222 12357788888865321
Q ss_pred CCCCccEEEecccCcCC-----CCHH--------------HHHHHHHHhcCCCCEEEE
Q 023974 174 KWGPLDVVFLYFLPAMP-----FPLD--------------QVFETLANRCSPGARVVI 212 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~-----~d~~--------------~al~el~RvLKPGGrlvI 212 (274)
.-+..|+++.+.+.... .+.+ ..++.+.+.++++|++++
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 12468999988664221 1222 124566677777888765
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.44 E-value=2.4 Score=41.72 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=48.8
Q ss_pred CeEE-EEcCc-hHHHHHH-HHhCCCcEEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCC---CCCCccEEEec
Q 023974 118 SKVL-VSISS-EEFVDRV-VESSPSLLLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPD---KWGPLDVVFLY 184 (274)
Q Consensus 118 ~rVL-vGcGT-G~l~~~L-~~~~~~~V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf---~~~sFD~V~~~ 184 (274)
.+|| ||||. |..++.. ++++..+|+..|-|.+-+++++.. .+++++++-|+.+.+. .-..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 4789 99977 5554443 444437999999999998888776 4678999999887652 12456999865
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.30 E-value=3.7 Score=41.37 Aligned_cols=95 Identities=13% Similarity=-0.059 Sum_probs=59.8
Q ss_pred CeEE-EEcCchHHHHHH--HHhCC-CcEEEEeCcHHHHHHHHHhCCC-----------ceEEEeeccCCCCCC-CCccEE
Q 023974 118 SKVL-VSISSEEFVDRV--VESSP-SLLLVVHDSLFVLAGIKEKYDT-----------VKCWQGELIYVPDKW-GPLDVV 181 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L--~~~~~-~~V~gVD~S~~ML~~Ar~k~~~-----------v~~~~gDae~LPf~~-~sFD~V 181 (274)
+.++ +|.|+|.-+-++ +-+.. ..++-||.|..|++.......+ +.|.. ..+|-.. +.||+|
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGYDLV 278 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccceeeE
Confidence 3566 777666543333 23332 5789999999999988765332 11222 2256443 559999
Q ss_pred EecccCcCCC---CHHHHHHHHHH-hcCCCCEEEEEcC
Q 023974 182 FLYFLPAMPF---PLDQVFETLAN-RCSPGARVVISHP 215 (274)
Q Consensus 182 ~~~f~l~~~~---d~~~al~el~R-vLKPGGrlvIs~~ 215 (274)
++++.++... ....+.++++| ..++||.+||.+.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9998776644 33455566554 5788999999543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.29 E-value=4 Score=35.57 Aligned_cols=70 Identities=7% Similarity=-0.004 Sum_probs=42.6
Q ss_pred CCCeEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHH----hCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKE----KYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~----k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .| |||.++..++ +++ .+|+++|-++.-++...+ +..++.++.+|+.+... ..+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788 77 4454555444 444 589999988754433322 22356678888766431 113
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
.+|+|+.+.+.
T Consensus 83 ~id~vi~~ag~ 93 (250)
T PRK07774 83 GIDYLVNNAAI 93 (250)
T ss_pred CCCEEEECCCC
Confidence 68999988654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 274 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 6e-04
Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 68/211 (32%)
Query: 34 NRHHH-DYNLPTLSHSLKPSLQLSLSTRKTSIGAASPPDEGTVSVVNFEDFTEIDWSFLD 92
+ HHH D+ + K L V + F +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILS-----------------------VFEDAFVD------- 31
Query: 93 SDELNFKEHIQRIDQIISAGEIDESSKVLVSISSEEFVDRVVESSPSLLLVVHDSL---F 149
+ K+ I+S EID +++S + R+ LL + + F
Sbjct: 32 --NFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFW----TLLSKQEEMVQKF 82
Query: 150 VLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY-------FLPAMPFPLDQVFETLAN 202
V ++ Y + I + P + +Y + F V +
Sbjct: 83 VEEVLRINYK----FLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNV-----S 132
Query: 203 RCSPGARVVISHPQGREALQKQRKQFPDVIV 233
R P + + R+AL + R +V++
Sbjct: 133 RLQP-------YLKLRQALLELRPA-KNVLI 155
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.93 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.93 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.92 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.92 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.91 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.91 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.91 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.91 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.91 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.91 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.91 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.91 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.91 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.91 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.9 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.9 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.9 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.9 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.9 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.9 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.89 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.89 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.89 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.89 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.89 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.89 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.89 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.89 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.89 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.89 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.89 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.88 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.88 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.88 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.88 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.88 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.88 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.88 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.88 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.87 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.87 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.87 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.87 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.87 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.87 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.87 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.87 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.87 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.86 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.86 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.86 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.86 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.86 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.86 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.86 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.85 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.85 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.85 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.85 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.85 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.85 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.85 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.84 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.83 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.83 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.83 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.82 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.82 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.82 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.82 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.81 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.81 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.81 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.81 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.81 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.81 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.81 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.81 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.8 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.8 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.8 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.8 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.8 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.8 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.8 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.8 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.79 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.79 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.79 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.79 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.79 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.79 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.79 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.79 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.79 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.79 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.79 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.78 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.78 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.78 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.78 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.77 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.77 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.77 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.77 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.76 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.76 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.76 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.76 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.76 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.76 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.76 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.76 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.76 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.75 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.75 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.75 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.75 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.75 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.74 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.74 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.73 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.73 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.73 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.73 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.73 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.72 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.72 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.72 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.72 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.72 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.71 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.7 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.7 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.7 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.7 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.69 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.69 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.69 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.69 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.69 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.68 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.68 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.68 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.68 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.67 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.66 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.66 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.66 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.65 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.65 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.65 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.65 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.65 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.64 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.64 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.64 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.64 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.63 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.63 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.63 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.63 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.63 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.63 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.63 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.63 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.62 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.62 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.62 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.62 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.62 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.61 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.61 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.6 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.59 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.58 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.58 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.58 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.57 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.56 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.56 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.56 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.55 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.54 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.53 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.53 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.52 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.52 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.52 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.52 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.52 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.51 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.51 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.51 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.5 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.5 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.5 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.49 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.49 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.49 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.49 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.49 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.49 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.48 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.48 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.48 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.48 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.47 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.47 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.47 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.46 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.46 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.46 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.46 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.45 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.45 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.45 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.44 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.44 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.4 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.4 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.4 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.4 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.38 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.37 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.35 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.35 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.33 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.33 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.32 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.3 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.29 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.26 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.25 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.23 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.22 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.2 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.19 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.19 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.19 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.18 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.17 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.17 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.16 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.15 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.15 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.14 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.13 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.11 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.11 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.09 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.06 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.01 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.95 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.94 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.92 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.85 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.84 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.8 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.8 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.75 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.58 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.55 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.54 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.49 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.39 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.34 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.34 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.31 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.29 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.26 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.18 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.12 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.11 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.01 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.92 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.88 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.83 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.8 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.76 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.67 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.66 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.62 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.57 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.57 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 97.55 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.55 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.52 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.48 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.45 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.45 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.44 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.43 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.42 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.39 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.38 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.36 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.33 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.31 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.26 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.25 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 97.23 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 97.22 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 97.22 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.2 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 97.19 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 97.15 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 97.13 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 97.11 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 97.11 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 97.07 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.07 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.04 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.02 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 97.01 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 97.0 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.99 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.99 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.96 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.94 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.92 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.92 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.92 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.91 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.9 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.86 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.84 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.82 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.75 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.71 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.7 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.7 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.69 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.67 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.66 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.64 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.61 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.6 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.58 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.53 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.44 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.43 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.4 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.35 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.31 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.3 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.29 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.26 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.25 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.23 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.23 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.22 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.07 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.93 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.9 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.87 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.72 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.4 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.38 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.28 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.24 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.13 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.05 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 94.97 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.9 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 94.87 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 94.81 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.65 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.58 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.49 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.4 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.21 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.19 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.16 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.08 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 94.06 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.03 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.0 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 93.38 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 93.37 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 93.23 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 93.19 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.19 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.11 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.09 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 93.02 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.0 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.98 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 92.93 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.78 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 92.77 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 92.68 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 92.67 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 92.63 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 92.63 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.59 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.57 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 92.53 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.52 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 92.44 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 92.4 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.38 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 92.29 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 92.29 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.28 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.26 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 92.18 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 92.1 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.05 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 91.87 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 91.86 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 91.78 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 91.71 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 91.51 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 91.5 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 91.45 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 91.42 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 91.38 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 91.32 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 91.28 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 91.17 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.17 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 91.15 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 91.12 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 91.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.93 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.89 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 90.85 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 90.83 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 90.82 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 90.81 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 90.79 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.78 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 90.71 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 90.68 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 90.66 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 90.61 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.55 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 90.51 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 90.51 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 90.51 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.5 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 90.45 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.44 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 90.42 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 90.34 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.31 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 90.15 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 90.09 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 89.99 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 89.87 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 89.8 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.79 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 89.74 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 89.7 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 89.66 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 89.47 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 89.46 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 89.45 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 89.38 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 89.32 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 89.31 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 89.27 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 89.24 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 89.22 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.21 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 89.16 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 89.1 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 89.08 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 89.04 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 89.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 88.99 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 88.92 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 88.9 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.87 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 88.82 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 88.77 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 88.76 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.76 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 88.72 |
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=192.80 Aligned_cols=165 Identities=11% Similarity=0.102 Sum_probs=135.8
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
...+++.+...++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.+ +++++++|++++|+. ++||+|+
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~ 111 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIV 111 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEE
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEE
Confidence 34566666666889999 9999999999998876 599999999999999999988 899999999999988 9999999
Q ss_pred ecccCcCCCCHHH--HHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHh-----hCc----ccccccCCCHHHHHHHHHhC
Q 023974 183 LYFLPAMPFPLDQ--VFETLANRCSPGARVVISHPQG--REALQKQRK-----QFP----DVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 183 ~~f~l~~~~d~~~--al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~-----~~~----~~si~~fps~~eL~~ll~~a 249 (274)
+..+++++.+++. +++++.|+|||||+++|.++.. ......... .+. ......+++.+++.++++++
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence 9999999988877 9999999999999999975432 111111111 111 11234688999999999999
Q ss_pred CCcEeEEEecCCeEEEEEEecC
Q 023974 250 CFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 250 GF~~v~~~d~~~~yl~v~~~~~ 271 (274)
||+++.....+..|++..+++.
T Consensus 192 Gf~v~~~~~~~~~w~~~~~~~~ 213 (220)
T 3hnr_A 192 GFHVTFTRLNHFVWVMEATKQL 213 (220)
T ss_dssp TEEEEEEECSSSEEEEEEEECS
T ss_pred CCEEEEeeccceEEEEeehhhh
Confidence 9999988888888999988874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=189.22 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=140.8
Q ss_pred ccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-
Q 023974 80 FEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK- 157 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k- 157 (274)
|++..+..|+...... +......+.+.+++.+...++ +|| ||||+|.++..+++....+|+|+|+|+.|++.|+++
T Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~ 86 (219)
T 3dlc_A 9 FDKKGAKNMDEISKTL-FAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNI 86 (219)
T ss_dssp TSHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHH
T ss_pred hhhcchhhHHHHHHHh-hccccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH
Confidence 3443444455443332 122344567788888887777 999 999999999999887226999999999999999987
Q ss_pred -----CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH-H----Hhh
Q 023974 158 -----YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQK-Q----RKQ 227 (274)
Q Consensus 158 -----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~-~----~~~ 227 (274)
.++++++++|++++|+.+++||+|++..+++++.++.+++++++|+|||||+++|.+..+...+.. . ...
T Consensus 87 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 166 (219)
T 3dlc_A 87 ADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRK 166 (219)
T ss_dssp HHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred HhccccCceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHh
Confidence 246899999999999999999999999999999999999999999999999999976554332221 1 111
Q ss_pred C---ccc--ccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEEecC
Q 023974 228 F---PDV--IVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 228 ~---~~~--si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~~~~ 271 (274)
. ... ....+.+.+++.++++++||+++....++..+.++.+|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~~ 215 (219)
T 3dlc_A 167 NPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD 215 (219)
T ss_dssp CTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBCCS
T ss_pred HHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCceEEEEeccc
Confidence 1 110 1123347799999999999988877765555555555543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=189.42 Aligned_cols=160 Identities=14% Similarity=0.044 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
.....+.+++.+.+.++.+|| ||||+|.++..+++....+|+|+|+|++|++.|+++. ++++++++|++++|+
T Consensus 46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 125 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF 125 (273)
T ss_dssp HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC
Confidence 344667888889999999999 9999999999998864479999999999999999873 258999999999999
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC----hhHHHH-HHhhCcccccccCCCHHHHHHHHHh
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG----REALQK-QRKQFPDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g----r~~l~~-~~~~~~~~si~~fps~~eL~~ll~~ 248 (274)
.+++||+|++...++++.++.++++++.|+|||||+++|.++.. ...... ....+.......+++.+++.+++++
T Consensus 126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 205 (273)
T 3bus_A 126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205 (273)
T ss_dssp CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965321 111111 1111111224568999999999999
Q ss_pred CCCcEeEEEecC
Q 023974 249 HCFQIDNFVDES 260 (274)
Q Consensus 249 aGF~~v~~~d~~ 260 (274)
+||+++...+..
T Consensus 206 aGf~~~~~~~~~ 217 (273)
T 3bus_A 206 AELVVTSTVDIS 217 (273)
T ss_dssp TTCEEEEEEECH
T ss_pred cCCeEEEEEECc
Confidence 999998877643
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=184.99 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=133.9
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
...+++.+.+.++.+|| +|||+|.++..+++.+ + .+|+|+|+|+.|++.|+++. ++++++++|++++|+.++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45677778888999999 9999999999998875 5 79999999999999999874 579999999999999999
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+||+|++..+++++.++..+++++.|+|||||+++|.+...... ........+.+.+++.++++++||+++..
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEER-------DKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCC-------SSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccc-------ccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 99999999999999999999999999999999999975432211 11112345678999999999999998886
Q ss_pred Ee-cCCeEEEEEEecC
Q 023974 257 VD-ESGFYLVVLKFSK 271 (274)
Q Consensus 257 ~d-~~~~yl~v~~~~~ 271 (274)
.+ .+..|.++.+|+.
T Consensus 179 ~~~~~~~~~~~~~k~~ 194 (219)
T 3dh0_A 179 VEVGKYCFGVYAMIVK 194 (219)
T ss_dssp EEETTTEEEEEEECC-
T ss_pred EeeCCceEEEEEEecc
Confidence 66 5677788888764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=190.75 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
......+.+++.+.+.++.+|| ||||+|.++..+++....+|+|+|+|+.|++.|+++. ++++++++|++++|+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 118 (266)
T 3ujc_A 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE 118 (266)
T ss_dssp THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCC
Confidence 3344677888888999999999 9999999999998873359999999999999999987 57899999999999999
Q ss_pred CCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCCh---hHHHHHHhhCcccccccCCCHHHHHHHHHhCC
Q 023974 176 GPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGR---EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC 250 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr---~~l~~~~~~~~~~si~~fps~~eL~~ll~~aG 250 (274)
++||+|++..+++++ .++.++++++.|+|||||+++|.++... .+...... +.......+++.+++.++++++|
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~G 197 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKE-YVKQRKYTLITVEEYADILTACN 197 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHH-HHHHHTCCCCCHHHHHHHHHHTT
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHH-HHhcCCCCCCCHHHHHHHHHHcC
Confidence 999999999999998 8999999999999999999999653211 11111111 11112245789999999999999
Q ss_pred CcEeEEEecC
Q 023974 251 FQIDNFVDES 260 (274)
Q Consensus 251 F~~v~~~d~~ 260 (274)
|+++...+..
T Consensus 198 f~~~~~~~~~ 207 (266)
T 3ujc_A 198 FKNVVSKDLS 207 (266)
T ss_dssp CEEEEEEECH
T ss_pred CeEEEEEeCC
Confidence 9998877644
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=190.49 Aligned_cols=155 Identities=9% Similarity=0.035 Sum_probs=124.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~s 177 (274)
.+..+++.+.+.++.+|| ||||+|.++..+++.++ +|+|+|+|++|++.|+++. +++.++++|++++|+.+++
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence 355677777888999999 99999999999988875 9999999999999999863 6799999999999999999
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhh---CcccccccCCCHHHHHHHHHhCCCc
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRKQ---FPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~---~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
||+|++.++++++.|+.+++++++|+|||||+|+|.++.. .......... ........+.+.+++.++++++||+
T Consensus 104 fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 183 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE 183 (260)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCe
Confidence 9999999999999999999999999999999999964321 1222222111 1111224567899999999999999
Q ss_pred EeEEEec
Q 023974 253 IDNFVDE 259 (274)
Q Consensus 253 ~v~~~d~ 259 (274)
++.....
T Consensus 184 ~~~~~~~ 190 (260)
T 1vl5_A 184 LEELHCF 190 (260)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8776654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=183.02 Aligned_cols=169 Identities=11% Similarity=0.035 Sum_probs=129.6
Q ss_pred cccccccccc-CCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc
Q 023974 84 TEIDWSFLDS-DELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV 161 (274)
Q Consensus 84 ~~~~Wd~~~~-~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v 161 (274)
.+..|+.... ..........++..++... +.+|| ||||+|.++..|++.+ .+|+|+|+|++|++.|+++.+++
T Consensus 12 ~a~~y~~~~~~~~~~~~~~~~~l~~~~~~~----~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~ 86 (203)
T 3h2b_A 12 PTFDAEALLGTVISAEDPDRVLIEPWATGV----DGVILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPSV 86 (203)
T ss_dssp TTTCHHHHTCSSCCTTCTTHHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHTT-CCEEEECCCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHhccC----CCeEEEecCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCCCC
Confidence 4444653322 2222223334455555432 67999 9999999999998886 49999999999999999999999
Q ss_pred eEEEeeccCCCCCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCH
Q 023974 162 KCWQGELIYVPDKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQ 239 (274)
Q Consensus 162 ~~~~gDae~LPf~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~ 239 (274)
+++++|++++|+.+++||+|++..+++++. ++.++++++.|+|||||+++|..+.... ............+.+.
T Consensus 87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~ 162 (203)
T 3h2b_A 87 TFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS----LEPMYHPVATAYRWPL 162 (203)
T ss_dssp EEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS----CEEECCSSSCEEECCH
T ss_pred eEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc----hhhhhchhhhhccCCH
Confidence 999999999999999999999999988886 8999999999999999999997654322 0001111123446789
Q ss_pred HHHHHHHHhCCCcEeEEEecCC
Q 023974 240 MTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
+++.++++++||+++.....+.
T Consensus 163 ~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 163 PELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHCCCcEEEEEecCC
Confidence 9999999999999988776443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=185.87 Aligned_cols=155 Identities=8% Similarity=0.108 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCc
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sF 178 (274)
.......+++.+.+.++.+|| ||||||.++..+++..+ .+|+|+|+|++|++.|+++.++++++++|++++| .+++|
T Consensus 18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~f 96 (259)
T 2p35_A 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKA 96 (259)
T ss_dssp GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCc
Confidence 334667888888888899999 99999999999988854 7999999999999999999999999999999999 78999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh-----HHHHHHhh--Cccc------ccccCCCHHHHHHH
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE-----ALQKQRKQ--FPDV------IVSDLPDQMTLQKA 245 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~-----~l~~~~~~--~~~~------si~~fps~~eL~~l 245 (274)
|+|+++.+++++.|+.+++++++|+|||||+++|..+.... .+.+.... |... ....+++.+++.++
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999997543211 12222221 2211 23468899999999
Q ss_pred HHhCCCcEeEE
Q 023974 246 AGNHCFQIDNF 256 (274)
Q Consensus 246 l~~aGF~~v~~ 256 (274)
++++||++...
T Consensus 177 l~~aGf~v~~~ 187 (259)
T 2p35_A 177 LSPKSSRVDVW 187 (259)
T ss_dssp HGGGEEEEEEE
T ss_pred HHhcCCceEEE
Confidence 99999975443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=186.33 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=127.5
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
..+..+++.+.+.++.+|| ||||||.++..+++....+|+|+|+|++|++.|+++. ++++++++|++++|+ +
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~ 101 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-N 101 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-S
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-C
Confidence 3577888888999999999 9999999999998874459999999999999999763 368999999999998 8
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++||+|++...+++..|+.+++++++|+|||||+++|.++... .........+.......+++.+++.++++++||++
T Consensus 102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 181 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDV 181 (256)
T ss_dssp SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCC
T ss_pred CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCee
Confidence 9999999998899888999999999999999999999754211 11122333333334457889999999999999988
Q ss_pred eEEEe
Q 023974 254 DNFVD 258 (274)
Q Consensus 254 v~~~d 258 (274)
+....
T Consensus 182 ~~~~~ 186 (256)
T 1nkv_A 182 VEMVL 186 (256)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 77644
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=181.33 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=116.3
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.++.+|| ||||||.++..+++.++ +|+|+|+|++|++.|+++.+ +++++++|+++++ .+++||+|++..+++++.|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC-cCCcccEEEEhhHHHhhcC
Confidence 4677999 99999999999988775 89999999999999999987 8999999999984 6899999999999999999
Q ss_pred HHHHHHHHH-HhcCCCCEEEEEcCCChhHHHHHH---hhCc----------ccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 193 LDQVFETLA-NRCSPGARVVISHPQGREALQKQR---KQFP----------DVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 193 ~~~al~el~-RvLKPGGrlvIs~~~gr~~l~~~~---~~~~----------~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
+++++++++ |+|||||+++|..+.......... ..+. ......+.+.+++.++++++||+++...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999 999999999998664332211111 1111 0012346789999999999999988765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=182.34 Aligned_cols=185 Identities=9% Similarity=-0.002 Sum_probs=134.0
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD- 159 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~- 159 (274)
.+..||........+ .....+.+++.+. ..++.+|| ||||||.++..+++..+ .+|+|+|+|+.|++.|+++.+
T Consensus 13 ~a~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 90 (234)
T 3dtn_A 13 VSGKYDEQRRKFIPC--FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90 (234)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred HHHHHHHhHHHhCcC--HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc
Confidence 455577655432222 1223356666654 56788999 99999999999999875 799999999999999999865
Q ss_pred --CceEEEeeccCCCCCCCCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC--hhHHHHH---------
Q 023974 160 --TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG--REALQKQ--------- 224 (274)
Q Consensus 160 --~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g--r~~l~~~--------- 224 (274)
+++++++|++++|+. ++||+|++..+++++.+++ +++++++|+|||||+++|.++.. .......
T Consensus 91 ~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (234)
T 3dtn_A 91 NLKVKYIEADYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYV 169 (234)
T ss_dssp CTTEEEEESCTTTCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHH
Confidence 689999999999987 9999999999999987666 59999999999999999975321 1111111
Q ss_pred ----------HhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-cCCeEEEEEEecC
Q 023974 225 ----------RKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-ESGFYLVVLKFSK 271 (274)
Q Consensus 225 ----------~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-~~~~yl~v~~~~~ 271 (274)
...+.......+++.+++.++++++||+++...- .-.+-+.+..+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~ 227 (234)
T 3dtn_A 170 ENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTE 227 (234)
T ss_dssp HTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC-
T ss_pred HhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEecc
Confidence 0111111345577899999999999998876544 3344455555543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=183.05 Aligned_cols=143 Identities=9% Similarity=0.047 Sum_probs=117.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
+.++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++ .++++++++|++++|+.+++||+|++..+++++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 34778999 9999999999998886 4999999999999999998 457899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
.++.+++++++|+|||||+++|..+... .........+.......+.+.+++.++++++||+++...
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 9999999999999999999999753221 111111112222223456789999999999999988765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=191.68 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=136.7
Q ss_pred ccccccccccccccccCC-ccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH
Q 023974 78 VNFEDFTEIDWSFLDSDE-LNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK 155 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~-~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar 155 (274)
..|++..++.||...... .........+.+++.. .+.++.+|| ||||||.++..|++.+. +|+|+|+|++|++.|+
T Consensus 12 ~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~ 89 (263)
T 3pfg_A 12 ADYSGEIAELYDLVHQGKGKDYHREAADLAALVRR-HSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIAR 89 (263)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHH
T ss_pred cccchhHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-hCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHH
Confidence 345534556677655421 1111111222233322 234668999 99999999999988774 8999999999999999
Q ss_pred HhCCCceEEEeeccCCCCCCCCccEEEecc-cCcCCC---CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH-------
Q 023974 156 EKYDTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMPF---PLDQVFETLANRCSPGARVVISHPQGREALQKQ------- 224 (274)
Q Consensus 156 ~k~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~~---d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~------- 224 (274)
++.++++++++|++++|+ +++||+|++.+ +++++. ++.+++++++|+|||||+|+|........+...
T Consensus 90 ~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 168 (263)
T 3pfg_A 90 RRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTV 168 (263)
T ss_dssp HHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEE
T ss_pred hhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhcccccccccee
Confidence 999999999999999998 89999999998 888874 666889999999999999999632111100000
Q ss_pred ----------------------H------------hhCcccccccCCCHHHHHHHHHhCCCcEeEEEec-CCeEEEEEEe
Q 023974 225 ----------------------R------------KQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE-SGFYLVVLKF 269 (274)
Q Consensus 225 ----------------------~------------~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~-~~~yl~v~~~ 269 (274)
. +.+...+...+.+.+++.++++++||+++..... ....+.|++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 169 EAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred ccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 0 0000112245778999999999999998886653 4567888888
Q ss_pred cCCC
Q 023974 270 SKSK 273 (274)
Q Consensus 270 ~~~~ 273 (274)
+..+
T Consensus 249 ~a~~ 252 (263)
T 3pfg_A 249 GAKG 252 (263)
T ss_dssp CC--
T ss_pred CCCC
Confidence 7654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=189.89 Aligned_cols=158 Identities=12% Similarity=0.146 Sum_probs=118.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhC--C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEE
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESS--P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~--~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
.+++|++|| ||||||.++..|+++. + .+|+|||+|++||+.||++. .++++++||++++|+ ++||+|+
T Consensus 67 ~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~ 144 (261)
T 4gek_A 67 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 144 (261)
T ss_dssp HCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEE
T ss_pred hCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccce
Confidence 367899999 9999999999998863 3 58999999999999999873 258999999999997 4699999
Q ss_pred ecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC--hhHHH----HHHhh------Cccc----------ccccCCC
Q 023974 183 LYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG--REALQ----KQRKQ------FPDV----------IVSDLPD 238 (274)
Q Consensus 183 ~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g--r~~l~----~~~~~------~~~~----------si~~fps 238 (274)
++++++++.+. .+++++++|+|||||+|+|++... ..... ..+.. +... .+....+
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s 224 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 224 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence 99999988644 478999999999999999975321 11111 11111 1110 1233457
Q ss_pred HHHHHHHHHhCCCcEeEE-EecCCeEEEEEEecCC
Q 023974 239 QMTLQKAAGNHCFQIDNF-VDESGFYLVVLKFSKS 272 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v~~-~d~~~~yl~v~~~~~~ 272 (274)
.+++.++|+++||+.+.. -..-.|.-.|.+|+..
T Consensus 225 ~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~~ 259 (261)
T 4gek_A 225 VETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 259 (261)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcCC
Confidence 899999999999977653 2233455677888764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=183.80 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=124.2
Q ss_pred HHHHHHHHhC-CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC
Q 023974 103 QRIDQIISAG-EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~-~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~ 174 (274)
.....+++.+ .+.++.+|| ||||+|.++..+++.++++|+|+|+|+.|++.|+++. + +++++++|++++|+.
T Consensus 32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (257)
T 3f4k_A 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ 111 (257)
T ss_dssp HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence 3455666666 678889999 9999999999999987679999999999999999873 2 389999999999999
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
+++||+|++..+++++ +++++++++.|+|||||+++|.++. ...........|.. ....+++.+++.++++++||+
T Consensus 112 ~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~ 189 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD-AYPEISVIPTCIDKMERAGYT 189 (257)
T ss_dssp TTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH-HCTTCCBHHHHHHHHHHTTEE
T ss_pred CCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH-hCCCCCCHHHHHHHHHHCCCe
Confidence 9999999999999998 8999999999999999999997531 11111112122211 123478899999999999999
Q ss_pred EeEEEec
Q 023974 253 IDNFVDE 259 (274)
Q Consensus 253 ~v~~~d~ 259 (274)
++.....
T Consensus 190 ~v~~~~~ 196 (257)
T 3f4k_A 190 PTAHFIL 196 (257)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 8886553
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-23 Score=188.47 Aligned_cols=154 Identities=10% Similarity=0.100 Sum_probs=125.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+.+.+++.+.+.++.+|| ||||||.++..+++.+ .+|+|+|+|++|++.|+++.+++.+.++|++++|+ +++||+|+
T Consensus 45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~ 122 (279)
T 3ccf_A 45 YGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVF 122 (279)
T ss_dssp SCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEE
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEE
Confidence 345666777788899999 9999999999998844 69999999999999999999999999999999997 68999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh---hHHHHHHhh-----C--c-ccccccCCCHHHHHHHHHhCCC
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR---EALQKQRKQ-----F--P-DVIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr---~~l~~~~~~-----~--~-~~si~~fps~~eL~~ll~~aGF 251 (274)
+..+++++.|+.+++++++|+|||||+++|..+... .....+... + . ......+++.+++.++++++||
T Consensus 123 ~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 202 (279)
T 3ccf_A 123 SNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGF 202 (279)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTE
T ss_pred EcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999654321 111111111 1 0 1122357899999999999999
Q ss_pred cEeEEEec
Q 023974 252 QIDNFVDE 259 (274)
Q Consensus 252 ~~v~~~d~ 259 (274)
+++.....
T Consensus 203 ~~~~~~~~ 210 (279)
T 3ccf_A 203 DVTYAALF 210 (279)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 98776543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=187.44 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=127.2
Q ss_pred HHHHHHHHHhC----CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 102 IQRIDQIISAG----EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 102 ~~w~~~ll~~~----~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
....+.+++.+ .+.++.+|| ||||+|.++..+++....+|+|+|+|+.|++.|+++. ++++++++|+++
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 33556777777 888999999 9999999999998873359999999999999999864 468999999999
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHHhhCcccccccCCCHHHHHHH
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG-----REALQKQRKQFPDVIVSDLPDQMTLQKA 245 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~~~~~~~si~~fps~~eL~~l 245 (274)
+|+.+++||+|++..+++++.++.+++++++|+|||||+|+|.++.. ...+..+... .....+++.+++.++
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 220 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR---IKLHDMGSLGLYRSL 220 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH---HTCSSCCCHHHHHHH
T ss_pred CCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHH---hcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999975321 1112222111 123457899999999
Q ss_pred HHhCCCcEeEEEec
Q 023974 246 AGNHCFQIDNFVDE 259 (274)
Q Consensus 246 l~~aGF~~v~~~d~ 259 (274)
++++||+++...+.
T Consensus 221 l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 221 AKECGLVTLRTFSR 234 (297)
T ss_dssp HHHTTEEEEEEEEC
T ss_pred HHHCCCeEEEEEEC
Confidence 99999998887663
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=175.59 Aligned_cols=163 Identities=15% Similarity=0.111 Sum_probs=127.7
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCCCCCCccEE
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf~~~sFD~V 181 (274)
...+++.+. +.++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++. ++++++++|++++ +.+++||+|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v 111 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAV 111 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEE
Confidence 334444443 67788999 9999999999998886 49999999999999999865 6899999999998 788999999
Q ss_pred EecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCCh-hHHHHHHh-----hCc----c----cccccCCCHHHHHHH
Q 023974 182 FLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQGR-EALQKQRK-----QFP----D----VIVSDLPDQMTLQKA 245 (274)
Q Consensus 182 ~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr-~~l~~~~~-----~~~----~----~si~~fps~~eL~~l 245 (274)
+++.+++++.++ ..+++++.|+|||||+++|.++... ..+..... .+. . .+...+++.+++.++
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTER 191 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHH
Confidence 999999998875 8999999999999999999754321 11111110 000 0 023458899999999
Q ss_pred HHhCCCcEeEEEecCCeEEEEEEe
Q 023974 246 AGNHCFQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 246 l~~aGF~~v~~~d~~~~yl~v~~~ 269 (274)
++++||++..+...+.+|..+.+.
T Consensus 192 l~~aGf~v~~~~~~~~~~~~~~~~ 215 (218)
T 3ou2_A 192 LTALGWSCSVDEVHPGFLYATCRP 215 (218)
T ss_dssp HHHTTEEEEEEEEETTEEEEEEEE
T ss_pred HHHCCCEEEeeeccccceEeecCC
Confidence 999999988887778787777664
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-24 Score=183.72 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=133.0
Q ss_pred ccccccccccccccCC-ccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh
Q 023974 80 FEDFTEIDWSFLDSDE-LNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~-~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k 157 (274)
|++..+..||...... .........+.+++.... .++.+|| ||||||.++..+++.++ +|+|+|+|++|++.|+++
T Consensus 4 y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~ 81 (239)
T 3bxo_A 4 YEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKR 81 (239)
T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHh
Confidence 4424555677654321 111122223333443322 6778999 99999999999988875 999999999999999999
Q ss_pred CCCceEEEeeccCCCCCCCCccEEEecc-cCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH--------
Q 023974 158 YDTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQR-------- 225 (274)
Q Consensus 158 ~~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~-------- 225 (274)
.++++++++|++++|+ +++||+|+|.+ .++++ .++.+++++++++|||||+++|..+..........
T Consensus 82 ~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 160 (239)
T 3bxo_A 82 LPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRR 160 (239)
T ss_dssp CTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEE
T ss_pred CCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEec
Confidence 9999999999999997 78999999765 67776 45679999999999999999997432211100000
Q ss_pred ---------------------hhC------------cccccccCCCHHHHHHHHHhCCCcEeEEEec-CCeEEEEEEec
Q 023974 226 ---------------------KQF------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE-SGFYLVVLKFS 270 (274)
Q Consensus 226 ---------------------~~~------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d~-~~~yl~v~~~~ 270 (274)
..+ .......+.+.+++.++++++||++...... ...+++|++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 161 DGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred CCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 000 0001225678999999999999977766553 45678888874
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-23 Score=180.09 Aligned_cols=154 Identities=10% Similarity=0.043 Sum_probs=125.5
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCc
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sF 178 (274)
...+++.+++.++.+|| ||||||.++..+++.++ +|+|+|+|++|++.|+++. ++++++++|++++|+.+++|
T Consensus 10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 88 (239)
T 1xxl_A 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 88 (239)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcE
Confidence 45667788999999999 99999999999988874 9999999999999999763 67999999999999999999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhhC---cccccccCCCHHHHHHHHHhCCCcE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRKQF---PDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~~---~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
|+|++...++++.|+.+++++++|+|||||+++|.+... ...+......+ .......+.+.+++.++++++||++
T Consensus 89 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 168 (239)
T 1xxl_A 89 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 168 (239)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred EEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcE
Confidence 999999999999999999999999999999999965332 12222221111 1112234668999999999999998
Q ss_pred eEEEec
Q 023974 254 DNFVDE 259 (274)
Q Consensus 254 v~~~d~ 259 (274)
+.....
T Consensus 169 ~~~~~~ 174 (239)
T 1xxl_A 169 QDIQKW 174 (239)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 776653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-23 Score=172.59 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=128.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecc
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
++++.+.+.++.+|| ||||+|.++..+++.+. +|+|+|+|++|++.|+++.+++++.++| +|+.+++||+|+++.
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFAN 83 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEES
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc
Confidence 445556678889999 99999999999988764 9999999999999999999999999999 788889999999999
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC-CeEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES-GFYL 264 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~-~~yl 264 (274)
+++++.++.++++++.|+|||||+++|.+...... .. ........+.+++.++++ ||+++...+.. ..|.
T Consensus 84 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~ 154 (170)
T 3i9f_A 84 SFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENT------GI-GPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFG 154 (170)
T ss_dssp CSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCC------SS-SSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEE
T ss_pred chhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccc------cc-CchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEE
Confidence 99999999999999999999999999975432110 00 011234468899999998 99998887754 7899
Q ss_pred EEEEecCCC
Q 023974 265 VVLKFSKSK 273 (274)
Q Consensus 265 ~v~~~~~~~ 273 (274)
+|+++...+
T Consensus 155 l~~~~~~~~ 163 (170)
T 3i9f_A 155 LVLKRKTSE 163 (170)
T ss_dssp EEEEECCCC
T ss_pred EEEecCCCC
Confidence 999887655
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=179.69 Aligned_cols=184 Identities=10% Similarity=0.047 Sum_probs=132.5
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--- 159 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--- 159 (274)
++..||..............++..++... ..++.+|| ||||||.++..+++.+ .+|+|+|+|+.|++.|+++.+
T Consensus 6 ~a~~yd~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~ 83 (246)
T 1y8c_A 6 FAHIYDKLIRADVDYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQG 83 (246)
T ss_dssp HHHHHHHHTTCSCCHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcC
Confidence 34446655442111112222333444332 23678999 9999999999998876 489999999999999998753
Q ss_pred -CceEEEeeccCCCCCCCCccEEEecc-cCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh--------
Q 023974 160 -TVKCWQGELIYVPDKWGPLDVVFLYF-LPAMP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQRK-------- 226 (274)
Q Consensus 160 -~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~-------- 226 (274)
+++++++|++++|+. ++||+|++.. +++++ .++.+++++++|+|||||++++..+. ...+.....
T Consensus 84 ~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~ 161 (246)
T 1y8c_A 84 LKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS-YYKLSQVLGNNDFNYDD 161 (246)
T ss_dssp CCCEEECCCGGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC-HHHHHTTTTTCCEEEEE
T ss_pred CCeEEEecccccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC-HHHHHhhcCcceEEecC
Confidence 689999999999987 8999999998 88888 67889999999999999999996432 221111100
Q ss_pred -----hCc--------------------------ccccccCCCHHHHHHHHHhCCCcEeEEEec---------CCeEEEE
Q 023974 227 -----QFP--------------------------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE---------SGFYLVV 266 (274)
Q Consensus 227 -----~~~--------------------------~~si~~fps~~eL~~ll~~aGF~~v~~~d~---------~~~yl~v 266 (274)
.|. ......+.+.+++.++++++||+++..... ...+++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~v 241 (246)
T 1y8c_A 162 DEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYL 241 (246)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEE
T ss_pred CcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEE
Confidence 000 001235678999999999999998887543 3567888
Q ss_pred EEecC
Q 023974 267 LKFSK 271 (274)
Q Consensus 267 ~~~~~ 271 (274)
++|++
T Consensus 242 arK~~ 246 (246)
T 1y8c_A 242 VKLGG 246 (246)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88863
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-23 Score=183.17 Aligned_cols=158 Identities=7% Similarity=0.009 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
....|.+.+++.+...++.+|| ||||+|.++..+++.+..+|+|+|+|+.|++.|+++. ++++++++|++++|+.+
T Consensus 77 ~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 156 (254)
T 1xtp_A 77 VDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS
T ss_pred HHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCC
Confidence 4556778889888888889999 9999999999988875457999999999999999987 46899999999999999
Q ss_pred CCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 176 GPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++||+|++..+++++ .++.+++++++|+|||||+++|.++..... . ..........+.+.+++.++++++||++
T Consensus 157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD--R--FLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C--C--EEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--c--ceecccCCcccCCHHHHHHHHHHCCCEE
Confidence 999999999999988 458899999999999999999976421110 0 0000011123568899999999999999
Q ss_pred eEEEecCC
Q 023974 254 DNFVDESG 261 (274)
Q Consensus 254 v~~~d~~~ 261 (274)
+.......
T Consensus 233 ~~~~~~~~ 240 (254)
T 1xtp_A 233 VKEAFQEE 240 (254)
T ss_dssp EEEEECTT
T ss_pred EEeeecCC
Confidence 88876554
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=179.91 Aligned_cols=155 Identities=12% Similarity=0.026 Sum_probs=123.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCCCCCCccE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf~~~sFD~ 180 (274)
....+++.+...++.+|| ||||+|.++..+++.++.+|+|+|+|++|++.|+++. ++++++++|++++|+.+++||+
T Consensus 32 ~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 32 EWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred hHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 344566666777889999 9999999999998887569999999999999999986 4789999999999999999999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc---------------------------cccc
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP---------------------------DVIV 233 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~---------------------------~~si 233 (274)
|++..+++++.++.+++++++|+|||||+++|+.+. ..........|. ....
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH-PVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC-HHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC-CccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999999999999999999999999997432 111000000000 0001
Q ss_pred ccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 234 SDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 234 ~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
....+.+++.++++++||+++...+.
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 11238999999999999999988753
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=186.78 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=124.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
.+.+.+++.+...++.+|| ||||||.++..+++.+ .+|+|+|+|+.|++.|+++. +++|+++|++++|+.+++||+|
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT-CEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCCEeEE
Confidence 4777888888888999999 9999999999998754 69999999999999998877 8999999999999999999999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh----HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE----ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~----~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
++..+++++.|+.+++++++|+|| ||+++|.++.... +...............+++.+++. +++++||+++...
T Consensus 99 ~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~ 176 (261)
T 3ege_A 99 ISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAI 176 (261)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEE
T ss_pred EEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEE
Confidence 999999999999999999999999 9998886443111 111000000111235688899999 9999999887765
Q ss_pred ec
Q 023974 258 DE 259 (274)
Q Consensus 258 d~ 259 (274)
..
T Consensus 177 ~~ 178 (261)
T 3ege_A 177 PF 178 (261)
T ss_dssp EC
T ss_pred Ee
Confidence 53
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=179.80 Aligned_cols=169 Identities=8% Similarity=-0.052 Sum_probs=129.3
Q ss_pred cccccccCCccchhHHHHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------
Q 023974 87 DWSFLDSDELNFKEHIQRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------ 158 (274)
Q Consensus 87 ~Wd~~~~~~~~~~~~~~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------ 158 (274)
.|+.+....... .....++++.+. +.++.+|| ||||||.++..+++.+..+|+|+|+|+.|++.|+++.
T Consensus 19 ~~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~ 95 (267)
T 3kkz_A 19 FFSNMERQGPGS---PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ 95 (267)
T ss_dssp HHHTSSCSSSCC---HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred HHhhccccCCCC---HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 355544443332 234556666665 78899999 9999999999998874369999999999999999874
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhhCcccccccC
Q 023974 159 DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRKQFPDVIVSDL 236 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~~~~~si~~f 236 (274)
++++++++|++++|+.+++||+|++...++++ ++.++++++.|+|||||+++|.++.. ..........|.. ....+
T Consensus 96 ~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 173 (267)
T 3kkz_A 96 NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD-AYPEI 173 (267)
T ss_dssp TTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH-HCTTC
T ss_pred cCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH-hCCCC
Confidence 45999999999999999999999999999888 89999999999999999999965320 0001111112211 11357
Q ss_pred CCHHHHHHHHHhCCCcEeEEEecC
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
++.+++.++++++||+++...+-+
T Consensus 174 ~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 174 DTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp EEHHHHHHHHHHTTEEEEEEEECC
T ss_pred CCHHHHHHHHHHCCCEEEEEEECC
Confidence 789999999999999998876643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=181.87 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=120.9
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC-CCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP-DKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP-f~~~ 176 (274)
+.++++.+... +.+|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++. ++++++++|++++| +.++
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERG-HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 34566666544 67999 9999999999998876 59999999999999999874 56899999999998 7889
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHH---------HHHhhCc-----ccccccCCCHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQ---------KQRKQFP-----DVIVSDLPDQMTL 242 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~---------~~~~~~~-----~~si~~fps~~eL 242 (274)
+||+|++..+++++.|+.++++++.|+|||||+++|..+....... ....... ......+.+.+++
T Consensus 136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999997543221111 1111110 1122357789999
Q ss_pred HHHHHhCCCcEeEEEe
Q 023974 243 QKAAGNHCFQIDNFVD 258 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d 258 (274)
.++++++||+++....
T Consensus 216 ~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 216 YLWLEEAGWQIMGKTG 231 (285)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCceeeeee
Confidence 9999999999887655
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=178.65 Aligned_cols=146 Identities=8% Similarity=0.019 Sum_probs=113.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----------------CCceEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----------------DTVKCWQ 165 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----------------~~v~~~~ 165 (274)
.+.+.++.+.+.++.+|| +|||||..+..|++++. +|+|||+|++||+.|+++. +++++++
T Consensus 10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 345556667788899999 99999999999998874 9999999999999999872 4789999
Q ss_pred eeccCCCCCC-CCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEE-EEcCCChhHHHHHHhhCcccccccCCCHHH
Q 023974 166 GELIYVPDKW-GPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVV-ISHPQGREALQKQRKQFPDVIVSDLPDQMT 241 (274)
Q Consensus 166 gDae~LPf~~-~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlv-Is~~~gr~~l~~~~~~~~~~si~~fps~~e 241 (274)
+|++++|+.+ ++||+|++..++++++ +..+++++++|+|||||+++ ++...... ... ......+.++
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~-------~~~--~~~~~~~~~e 159 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA-------LLE--GPPFSVPQTW 159 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS-------SSS--SCCCCCCHHH
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc-------ccC--CCCCCCCHHH
Confidence 9999999876 8999999987777664 34579999999999999943 33222111 000 0111257899
Q ss_pred HHHHHHhCCCcEeEEEecC
Q 023974 242 LQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 242 L~~ll~~aGF~~v~~~d~~ 260 (274)
+.+++++ ||++......+
T Consensus 160 l~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 160 LHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp HHHTSCS-SEEEEEEEESS
T ss_pred HHHHhcC-CcEEEEecccc
Confidence 9999998 99987766543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.8e-23 Score=182.74 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=139.6
Q ss_pred ccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC
Q 023974 80 FEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY 158 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~ 158 (274)
+++..++.|+.+...... ....+.+.+++.+...++.+|| ||||||.++..|++.+. +|+|+|+|+.|++.|+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~ 99 (293)
T 3thr_A 23 ADGEAARVWQLYIGDTRS--RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKER 99 (293)
T ss_dssp TTCHHHHHHHHHHTCCSC--BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhcCcc--hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhh
Confidence 445566668865543222 1223445555555556788999 99999999999988875 9999999999999998753
Q ss_pred ---------CCceEEEeeccCCC---CCCCCccEEEec-ccCcCCCC-------HHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 159 ---------DTVKCWQGELIYVP---DKWGPLDVVFLY-FLPAMPFP-------LDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 159 ---------~~v~~~~gDae~LP---f~~~sFD~V~~~-f~l~~~~d-------~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
.++.+.++|+.++| +.+++||+|++. .+++++.+ +.+++++++|+|||||+++|..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (293)
T 3thr_A 100 WNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 179 (293)
T ss_dssp HHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred hhcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence 45789999999998 889999999998 78999888 99999999999999999999765422
Q ss_pred hHHHHHHh-------hCcc-------c----------------------------------ccccCC-CHHHHHHHHHhC
Q 023974 219 EALQKQRK-------QFPD-------V----------------------------------IVSDLP-DQMTLQKAAGNH 249 (274)
Q Consensus 219 ~~l~~~~~-------~~~~-------~----------------------------------si~~fp-s~~eL~~ll~~a 249 (274)
. +..... +|.. . ....+| +.+++.++|+++
T Consensus 180 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~l~~a 258 (293)
T 3thr_A 180 Y-ILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEA 258 (293)
T ss_dssp H-HHHHTCCCSSCCSSBCCCSCEEEEEEEEEETTEEEEEEEEEEEEEC------CCEEEEEEEEECCCCHHHHHHHHHHT
T ss_pred H-HhhcCCCCCccceeeccccccccccceEEEcCCccEEEEEEEEecCCccccCCCCcceeeeecCHHHHHHHHHHHHHH
Confidence 2 111100 0000 0 012255 688999999999
Q ss_pred --CCcEeEE-----------EecCCeEEEEEEecC
Q 023974 250 --CFQIDNF-----------VDESGFYLVVLKFSK 271 (274)
Q Consensus 250 --GF~~v~~-----------~d~~~~yl~v~~~~~ 271 (274)
||+.+.. .++++||+-|++||+
T Consensus 259 f~GF~~v~~~gdf~~~~~~~~~~~~~~~~v~~k~~ 293 (293)
T 3thr_A 259 FGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG 293 (293)
T ss_dssp TTTCEEEEEEETTEECCTTCSCCCSEEEEEEEECC
T ss_pred hcCCceEEEecccccCccCccCCCceEEEEEeeCC
Confidence 9976652 256789999999985
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=174.62 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=128.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
++..++.. +.++.+|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++. ++.+.++|++++| .+++||+|+
T Consensus 33 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~ 107 (211)
T 3e23_A 33 TLTKFLGE--LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVW 107 (211)
T ss_dssp HHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEE
T ss_pred HHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEE
Confidence 56666654 45788999 9999999999998876 49999999999999999987 6888999999999 789999999
Q ss_pred ecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCC-CcEeEEEec
Q 023974 183 LYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC-FQIDNFVDE 259 (274)
Q Consensus 183 ~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aG-F~~v~~~d~ 259 (274)
+..+++++. ++..++++++|+|||||+++|..+..... ..... .....+.+.+++.++++++| |+++.....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE---GRDKL--ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSC---EECTT--SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcc---ccccc--chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 999999887 78899999999999999999975433211 00011 12345789999999999999 998887653
Q ss_pred C--------CeEEEEEEecCC
Q 023974 260 S--------GFYLVVLKFSKS 272 (274)
Q Consensus 260 ~--------~~yl~v~~~~~~ 272 (274)
. ..|+.+++++..
T Consensus 183 ~~~~~~~~~~~wl~~~~~~~~ 203 (211)
T 3e23_A 183 EGKGFDQELAQFLHVSVRKPE 203 (211)
T ss_dssp EEECTTSCEEEEEEEEEECCC
T ss_pred cCCCCCCCCceEEEEEEecCc
Confidence 3 348888877654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=177.54 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=126.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CCCCC-Cc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PDKWG-PL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf~~~-sF 178 (274)
+...+++.+...++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++ +++.+.++|++++ |+..+ +|
T Consensus 40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADRG-IEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCC-CEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence 445566666666778999 9999999999998876 4999999999999999998 7789999999888 65554 59
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH-HHhh-----Cc------ccccccCCCHHHHHHHH
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQK-QRKQ-----FP------DVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~-~~~~-----~~------~~si~~fps~~eL~~ll 246 (274)
|+|++..+++ ..++.+++++++|+|||||+++|..+........ .... |. ......+.+.+++.+++
T Consensus 118 D~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (227)
T 3e8s_A 118 DLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196 (227)
T ss_dssp EEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH
T ss_pred cEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH
Confidence 9999998888 7899999999999999999999975532111000 0000 10 01234567999999999
Q ss_pred HhCCCcEeEEEec-------CCeEEEEEEec
Q 023974 247 GNHCFQIDNFVDE-------SGFYLVVLKFS 270 (274)
Q Consensus 247 ~~aGF~~v~~~d~-------~~~yl~v~~~~ 270 (274)
+++||+++..++. +..+++|.+|+
T Consensus 197 ~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 197 DMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp HHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred HHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 9999999987761 23577777764
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=175.69 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=120.9
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCCCCCCCccEEE
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+.+.+...++.+|| ||||||.++..+++.+..+|+|+|+|++|++.|+++.. +++++++|++++|+.+++||+|+
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 112 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAY 112 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEE
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEE
Confidence 3455666777889999 99999999999988754599999999999999999875 58999999999999899999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--------------------------ccccccC
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--------------------------DVIVSDL 236 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--------------------------~~si~~f 236 (274)
+..++++..++.+++++++|+|||||+++|..+.. .........|. ......+
T Consensus 113 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (243)
T 3bkw_A 113 SSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP-IYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHH 191 (243)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH-HHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEE
T ss_pred EeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc-ccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEe
Confidence 99999999999999999999999999999975321 10000000000 0001122
Q ss_pred CCHHHHHHHHHhCCCcEeEEEec
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.+.+++.++++++||+++...+.
T Consensus 192 ~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 192 RTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHcCCEeeeeccC
Confidence 57999999999999999888763
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-23 Score=180.82 Aligned_cols=144 Identities=10% Similarity=0.054 Sum_probs=115.7
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.+.++.+|| ||||||.++..+++.+ .+|+|+|+|++|++.|+++. ++++++++|++++|+.+++||+|++..++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 677889999 9999999999998875 59999999999999999984 67999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hh---HHHHHHhhCccc-----ccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISHPQG--RE---ALQKQRKQFPDV-----IVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~---~l~~~~~~~~~~-----si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
+++.|+.++++++.|+|||||++++..... .. +...+....... ....+.+.+++.++++++||+++...
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTRE 194 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceEE
Confidence 999999999999999999999999962211 11 111111111100 02235678999999999999876553
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=186.78 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCCCCeEE-EEcCchHHHHH----HHHhCC-CcE--EEEeCcHHHHHHHHHhC------CCc--eEEEeeccCCC-----
Q 023974 114 IDESSKVL-VSISSEEFVDR----VVESSP-SLL--LVVHDSLFVLAGIKEKY------DTV--KCWQGELIYVP----- 172 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~----L~~~~~-~~V--~gVD~S~~ML~~Ar~k~------~~v--~~~~gDae~LP----- 172 (274)
..++.+|| ||||||.++.. +..+.+ ..| +|+|+|++||+.|+++. +++ .+.++++++++
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 35678999 99999976543 344444 444 99999999999999873 233 45578887765
Q ss_pred -CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH-hhCc---ccccccCCCHHHHHHHHH
Q 023974 173 -DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQR-KQFP---DVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 173 -f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~-~~~~---~~si~~fps~~eL~~ll~ 247 (274)
+.+++||+|++.++++|++|+++++++++|+|||||+++|........+..+. ..+. ......+++.+++.++++
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 209 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD 209 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence 67899999999999999999999999999999999999996443322233332 2221 112346789999999999
Q ss_pred hCCCcEeEEEe
Q 023974 248 NHCFQIDNFVD 258 (274)
Q Consensus 248 ~aGF~~v~~~d 258 (274)
++||+++.+..
T Consensus 210 ~aGf~~~~~~~ 220 (292)
T 2aot_A 210 NLGLKYECYDL 220 (292)
T ss_dssp HHTCCEEEEEE
T ss_pred HCCCceEEEEe
Confidence 99998876544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=174.43 Aligned_cols=141 Identities=14% Similarity=0.021 Sum_probs=118.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC--CCCCCCccEEEecccCcCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV--PDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L--Pf~~~sFD~V~~~f~l~~~ 190 (274)
+.++.+|| ||||+|.++..+++.+. +|+|+|+|++|++.|+++ ++++++|++++ |+.+++||+|++..+++++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 56778999 99999999999988864 899999999999999988 88999999986 8889999999999999998
Q ss_pred CCH--HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 191 FPL--DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 191 ~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.++ .++++++.|+|||||+++|..+.... +......+.......+++.+++.++++++||+++.....
T Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 184 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKYSSYIVIESPNPTS-LYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFF 184 (240)
T ss_dssp CGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-HHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-hHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence 844 89999999999999999997665433 233334443333456788999999999999998776553
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=167.73 Aligned_cols=160 Identities=12% Similarity=0.029 Sum_probs=122.0
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK 162 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~ 162 (274)
++..||...... .+........++++.... ++.+|| ||||||.++..+ +..+|+|+|+|++|++.|+++.++++
T Consensus 6 ~a~~y~~~~~~~-~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~~~~ 80 (211)
T 2gs9_A 6 LAEAYEAWYGTP-LGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAPEAT 80 (211)
T ss_dssp TTTTTTGGGGSH-HHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHhccc-chhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCCCcE
Confidence 455577654431 111111344556665544 788999 999999998887 21389999999999999999999999
Q ss_pred EEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh-----CcccccccCC
Q 023974 163 CWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ-----FPDVIVSDLP 237 (274)
Q Consensus 163 ~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~-----~~~~si~~fp 237 (274)
++++|++++|+.+++||+|++..+++++.++.++++++.|+|||||+++|..+.....+...... ........+.
T Consensus 81 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (211)
T 2gs9_A 81 WVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFL 160 (211)
T ss_dssp EECCCTTSCCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCC
T ss_pred EEEcccccCCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccC
Confidence 99999999999999999999999999999999999999999999999999765433222222111 1111235688
Q ss_pred CHHHHHHHHHhCC
Q 023974 238 DQMTLQKAAGNHC 250 (274)
Q Consensus 238 s~~eL~~ll~~aG 250 (274)
+.+++.++++ |
T Consensus 161 s~~~l~~~l~--G 171 (211)
T 2gs9_A 161 AREDLKALLG--P 171 (211)
T ss_dssp CHHHHHHHHC--S
T ss_pred CHHHHHHHhc--C
Confidence 9999999998 7
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=171.12 Aligned_cols=136 Identities=10% Similarity=0.046 Sum_probs=112.6
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+.+|| ||||+|.++..+++. +|+|+|++|++.|+++ +++++++|++++|+.+++||+|++..++++..++.+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 120 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPER 120 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHH
Confidence 78999 999999999888543 9999999999999998 799999999999998999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc----ccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 196 VFETLANRCSPGARVVISHPQGREALQKQRKQFP----DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 196 al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~----~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+++++.|+|||||+++|..+.....+........ ......+.+.+++.++++++||+++.....
T Consensus 121 ~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 121 ALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999976543333333322211 112245679999999999999998876654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=182.85 Aligned_cols=149 Identities=11% Similarity=0.022 Sum_probs=122.5
Q ss_pred HHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCC
Q 023974 106 DQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~s 177 (274)
+.+++.+. +.++.+|| ||||+|.++..++++...+|+|+|+|++|++.|+++. ++++++++|++++|+.+++
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGA 185 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCC
Confidence 45677777 88999999 9999999999998872259999999999999999862 3689999999999999999
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC-------hhHHHHHHhhCcccccccCCCHHHHHHHHHhCC
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG-------REALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC 250 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g-------r~~l~~~~~~~~~~si~~fps~~eL~~ll~~aG 250 (274)
||+|++..+++++ ++.++++++.|+|||||+++|.++.. ......+...+ ...+++.+++.++++++|
T Consensus 186 fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~l~~aG 260 (312)
T 3vc1_A 186 VTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF----ECNIHSRREYLRAMADNR 260 (312)
T ss_dssp EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH----TCCCCBHHHHHHHHHTTT
T ss_pred EeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh----cCCCCCHHHHHHHHHHCC
Confidence 9999999999988 79999999999999999999964211 11222222221 235789999999999999
Q ss_pred CcEeEEEec
Q 023974 251 FQIDNFVDE 259 (274)
Q Consensus 251 F~~v~~~d~ 259 (274)
|+++...+-
T Consensus 261 f~~~~~~~~ 269 (312)
T 3vc1_A 261 LVPHTIVDL 269 (312)
T ss_dssp EEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 998887763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-23 Score=179.27 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=114.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-----CceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-----TVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
.++.+|| ||||||.++..+++.+..+|+|+|+|++|++.|+++.+ +++++++|++++++.+++||+|++..+++
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 3678999 99999999999887754699999999999999999865 37899999999999888999999999999
Q ss_pred CCCCHH--HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023974 189 MPFPLD--QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 189 ~~~d~~--~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
++.+++ ++++++.|+|||||+++|.++.... ...+.........+.+++.++++++||+++.......
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-----GVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-----SEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-----cceecccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 988754 8999999999999999996543211 0111111111234789999999999999998876543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=172.68 Aligned_cols=177 Identities=10% Similarity=0.050 Sum_probs=131.5
Q ss_pred ccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----
Q 023974 84 TEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---- 158 (274)
Q Consensus 84 ~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---- 158 (274)
+++.||...... ....|.+.+++.+ .++.+|| ||||||.++..+++. .+|+|+|+|++|++.|+++.
T Consensus 7 ~a~~yd~~~~~~----~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~ 78 (243)
T 3d2l_A 7 FAYVYDELMQDV----PYPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN 78 (243)
T ss_dssp TTHHHHHHTTTC----CHHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhcc----cHHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC
Confidence 445577655422 2345777777665 4568999 999999999999776 59999999999999999874
Q ss_pred CCceEEEeeccCCCCCCCCccEEEecc-cCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh--------
Q 023974 159 DTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQRK-------- 226 (274)
Q Consensus 159 ~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~-------- 226 (274)
.+++++++|+.++|+. ++||+|++.+ .+++. .++.++++++.|+|||||++++..+. ...+.+...
T Consensus 79 ~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~ 156 (243)
T 3d2l_A 79 RHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS-PYKMETLFNGKTYATHA 156 (243)
T ss_dssp CCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC-HHHHHTTTSSEEEEEEC
T ss_pred CceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC-HHHHHHhcCCcceeEEC
Confidence 4689999999999876 8999999986 77776 56678999999999999999985332 111111100
Q ss_pred -----hCc-----------------------------ccccccCCCHHHHHHHHHhCCCcEeEEEec---------CCeE
Q 023974 227 -----QFP-----------------------------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE---------SGFY 263 (274)
Q Consensus 227 -----~~~-----------------------------~~si~~fps~~eL~~ll~~aGF~~v~~~d~---------~~~y 263 (274)
.|. ..+...+.+.+++.++++++||+++....+ ...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 236 (243)
T 3d2l_A 157 EQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERI 236 (243)
T ss_dssp SSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEE
T ss_pred CCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEE
Confidence 000 001224679999999999999998887643 4567
Q ss_pred EEEEEec
Q 023974 264 LVVLKFS 270 (274)
Q Consensus 264 l~v~~~~ 270 (274)
++|++|+
T Consensus 237 ~~va~K~ 243 (243)
T 3d2l_A 237 FFVAEKI 243 (243)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8888874
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=180.06 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf 173 (274)
...|++..+....+.++.+|| ||||||.++..+++.+..+|+|+|+|++|++.|+++.+ +++++++|++++|+
T Consensus 49 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 128 (298)
T 1ri5_A 49 ANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM 128 (298)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccccc
Confidence 345776665444567889999 99999999988887754699999999999999998743 47999999999998
Q ss_pred -CCCCccEEEecccCcC----CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh-C---------------cc--
Q 023974 174 -KWGPLDVVFLYFLPAM----PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ-F---------------PD-- 230 (274)
Q Consensus 174 -~~~sFD~V~~~f~l~~----~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~-~---------------~~-- 230 (274)
.+++||+|++.+++++ ..++.++++++.|+|||||+++|..+........+... + +.
T Consensus 129 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (298)
T 1ri5_A 129 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMES 208 (298)
T ss_dssp CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTT
T ss_pred CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccc
Confidence 6899999999988866 46778999999999999999999866533222221100 0 00
Q ss_pred -------------cccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 231 -------------VIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 231 -------------~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.....+.+.+++.++++++||+++....-
T Consensus 209 g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 209 VREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp CCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 01135778999999999999999887653
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.06 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=122.4
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
..++.+++.+++.++.+|| ||||+|.++..+++..+.+|+|+|+|++|++.|+++. ++++++++|++++|
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 3567788888899999999 9999999999998543359999999999999999873 36899999999887
Q ss_pred CCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHH-------------H----HHhhCcccccccC
Q 023974 176 GPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQ-------------K----QRKQFPDVIVSDL 236 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~-------------~----~~~~~~~~si~~f 236 (274)
++||+|++..+++++ .++.++++++.|+|||||+++|..+....... . +..... ....+
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 205 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF--PGGRL 205 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS--TTCCC
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeC--CCCCC
Confidence 899999999888888 68899999999999999999996432111100 0 111110 12457
Q ss_pred CCHHHHHHHHHhCCCcEeEEEecC
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
|+.+++.++++++||+++...+..
T Consensus 206 ~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 206 PSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCHHHHHHHHHhCCcEEEEEEeCc
Confidence 899999999999999998887643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-22 Score=177.92 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=125.1
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCCC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPDK 174 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf~ 174 (274)
...++.+++.+.+.++.+|| ||||+|.++..+++..+.+|+|+|+|++|++.|+++.. +++++++|++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--- 134 (302)
T 3hem_A 58 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--- 134 (302)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred HHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---
Confidence 33567888889999999999 99999999999988733699999999999999998732 588999999887
Q ss_pred CCCccEEEecccCcCCCCH---------HHHHHHHHHhcCCCCEEEEEcCCChhH--HHH---------------HHhhC
Q 023974 175 WGPLDVVFLYFLPAMPFPL---------DQVFETLANRCSPGARVVISHPQGREA--LQK---------------QRKQF 228 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~---------~~al~el~RvLKPGGrlvIs~~~gr~~--l~~---------------~~~~~ 228 (274)
+++||+|++..++++++|+ .++++++.|+|||||+++|........ ... +.++.
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 214 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhc
Confidence 7999999999999998666 799999999999999999965422111 110 01110
Q ss_pred cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 229 PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 229 ~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
. ....+|+.+++.++++++||+++...+....|
T Consensus 215 ~--p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 215 F--PGGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp C--TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred C--CCCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 0 12358999999999999999999887755443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=169.26 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=116.0
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----------CceEEEeeccCCCCCCCCccEEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----------TVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----------~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+.++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.. +++++++|++++|+.+++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35788999 9999999999998886 599999999999999998754 36899999999999999999999
Q ss_pred ecccCcCCCCHH---HHHHHHHHhcCCCCEEEEEcCCCh---hHHHHH-HhhCcc-----------------cccccCCC
Q 023974 183 LYFLPAMPFPLD---QVFETLANRCSPGARVVISHPQGR---EALQKQ-RKQFPD-----------------VIVSDLPD 238 (274)
Q Consensus 183 ~~f~l~~~~d~~---~al~el~RvLKPGGrlvIs~~~gr---~~l~~~-~~~~~~-----------------~si~~fps 238 (274)
+..+++++.+++ ++++++.|+|||||+++|.++... ...... ...+.. .....+.+
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 999999998988 999999999999999999654221 111111 110000 12235789
Q ss_pred HHHHHHHHHhCCCcEeEEEe
Q 023974 239 QMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v~~~d 258 (274)
.+++.++++++||+++.+..
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEe
Confidence 99999999999999988764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=176.10 Aligned_cols=158 Identities=9% Similarity=0.049 Sum_probs=123.7
Q ss_pred HHHHHHHhC-CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCC
Q 023974 104 RIDQIISAG-EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~-~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~ 175 (274)
+...+++.+ .+.++.+|| ||||||.++..+++..+ .+|+|+|+|+.|++.|+++.. +++++++|++++|+ +
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~ 87 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-N 87 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-S
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-C
Confidence 455555554 677889999 99999999999988744 699999999999999998743 68999999999998 5
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH----------------HHHHHhhC---cccccccC
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA----------------LQKQRKQF---PDVIVSDL 236 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~----------------l~~~~~~~---~~~si~~f 236 (274)
++||+|++..+++++.|+.+++++++|+|||||++++.++..... +......+ .......+
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG 167 (284)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCT
T ss_pred CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccc
Confidence 799999999999999999999999999999999999976641000 11111111 11123456
Q ss_pred CCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 237 PDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 237 ps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
.+.+++.++++++||+.+.....+..
T Consensus 168 ~~~~~l~~~l~~aGF~~v~~~~~~~~ 193 (284)
T 3gu3_A 168 NIGMKIPIYLSELGVKNIECRVSDKV 193 (284)
T ss_dssp TGGGTHHHHHHHTTCEEEEEEECCCC
T ss_pred cHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77789999999999988877654443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-23 Score=183.35 Aligned_cols=182 Identities=9% Similarity=-0.005 Sum_probs=127.9
Q ss_pred ccccccccCCc--cchh-HHHHHHHHHHhC---CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC
Q 023974 86 IDWSFLDSDEL--NFKE-HIQRIDQIISAG---EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY 158 (274)
Q Consensus 86 ~~Wd~~~~~~~--~~~~-~~~w~~~ll~~~---~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~ 158 (274)
..||.+..... +++. ...|..+.+..+ +..++.+|| ||||||.+...++..+..+|+|+|+|+.||+.|+++.
T Consensus 19 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~ 98 (263)
T 2a14_A 19 DYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWL 98 (263)
T ss_dssp HHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHH
Confidence 44666554322 2222 355765555433 566788999 9999998777666555357999999999999998742
Q ss_pred C----------------------------------Cce-EEEeeccC-CCCC---CCCccEEEecccCcCC----CCHHH
Q 023974 159 D----------------------------------TVK-CWQGELIY-VPDK---WGPLDVVFLYFLPAMP----FPLDQ 195 (274)
Q Consensus 159 ~----------------------------------~v~-~~~gDae~-LPf~---~~sFD~V~~~f~l~~~----~d~~~ 195 (274)
. +++ ++++|+.+ .|+. +++||+|+++++++++ +++.+
T Consensus 99 ~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~ 178 (263)
T 2a14_A 99 KKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRA 178 (263)
T ss_dssp HTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHH
T ss_pred hcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHH
Confidence 1 122 88999988 4543 6799999999988763 46679
Q ss_pred HHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe-----------cCCeEE
Q 023974 196 VFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-----------ESGFYL 264 (274)
Q Consensus 196 al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-----------~~~~yl 264 (274)
++++++|+|||||+|+++........ ..........+.+.+++.++++++||+++.... .+.+|+
T Consensus 179 ~l~~i~r~LKPGG~li~~~~~~~~~~----~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~ 254 (263)
T 2a14_A 179 ALCNLASLLKPGGHLVTTVTLRLPSY----MVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCC 254 (263)
T ss_dssp HHHHHHTTEEEEEEEEEEEESSCCEE----EETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEE
T ss_pred HHHHHHHHcCCCcEEEEEEeecCccc----eeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEE
Confidence 99999999999999999753221100 000000112245899999999999999888765 247889
Q ss_pred EEEEecC
Q 023974 265 VVLKFSK 271 (274)
Q Consensus 265 ~v~~~~~ 271 (274)
++++|.+
T Consensus 255 ~~a~K~~ 261 (263)
T 2a14_A 255 IVARKKP 261 (263)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999875
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=173.02 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=120.0
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccE
Q 023974 108 IISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+.....+.++.+|| ||||+|.++..+++..| .+|+|+|+|+.|++.|+++ .++++++++|++++|+.+++||+
T Consensus 29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 108 (276)
T 3mgg_A 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDH 108 (276)
T ss_dssp HHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEE
T ss_pred HhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeE
Confidence 33345668899999 99999999999999876 8999999999999999987 35799999999999999999999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC---------CChhHHHHHHhhCc---ccccccCCCHHHHHHHHHh
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP---------QGREALQKQRKQFP---DVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~---------~gr~~l~~~~~~~~---~~si~~fps~~eL~~ll~~ 248 (274)
|++..+++++.|++.+++++.|+|||||+++|.++ ..... .+....+. ........+.+++.+++++
T Consensus 109 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 109 IFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA-IEAWNCLIRVQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHH-HHHHHHHHHHHHHTTCCTTGGGGHHHHHHH
T ss_pred EEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHH-HHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999643 22211 11111110 0011233456899999999
Q ss_pred CCCcEeEEEec
Q 023974 249 HCFQIDNFVDE 259 (274)
Q Consensus 249 aGF~~v~~~d~ 259 (274)
+||+++.....
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99998877643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=159.99 Aligned_cols=145 Identities=13% Similarity=0.108 Sum_probs=120.0
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec-
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY- 184 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~- 184 (274)
++++.+ +.++.+|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.++++++++|+.++|+.+++||+|+++
T Consensus 38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAG 115 (195)
T ss_dssp HHHHHH-SCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred HHHHHh-ccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECC
Confidence 444444 56788999 9999999999998876 5999999999999999999999999999999999888999999998
Q ss_pred ccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec---
Q 023974 185 FLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE--- 259 (274)
Q Consensus 185 f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~--- 259 (274)
..+++. .+..++++++.++|||||++++..+..+ -.+.+++.++++++||+++.....
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-----------------~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 178 (195)
T 3cgg_A 116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-----------------GWVFGDFLEVAERVGLELENAFESWDL 178 (195)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-----------------SCCHHHHHHHHHHHTEEEEEEESSTTC
T ss_pred cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------CcCHHHHHHHHHHcCCEEeeeeccccc
Confidence 566665 3557999999999999999999754321 145789999999999998876543
Q ss_pred ------CCeEEEEEEec
Q 023974 260 ------SGFYLVVLKFS 270 (274)
Q Consensus 260 ------~~~yl~v~~~~ 270 (274)
..++++|.+|+
T Consensus 179 ~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 179 KPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp CBCCTTCSEEEEEEEEC
T ss_pred CcCCCCCcEEEEEEecC
Confidence 45667777663
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=175.38 Aligned_cols=153 Identities=11% Similarity=0.062 Sum_probs=121.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-------------------------------
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT------------------------------- 160 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~------------------------------- 160 (274)
...++.+|| ||||||.++..+++.+..+|+|+|+|+.|++.|+++...
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 446778999 999999999888776545899999999999999987532
Q ss_pred ---c-eEEEeeccCCC-CCC---CCccEEEecccCc----CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 161 ---V-KCWQGELIYVP-DKW---GPLDVVFLYFLPA----MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 161 ---v-~~~~gDae~LP-f~~---~sFD~V~~~f~l~----~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
+ .+.++|+.+++ +.+ ++||+|++.++++ +..++.++++++.|+|||||+|++....+.. .+
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~ 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-------YY 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-------EE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-------eE
Confidence 6 89999999874 356 8999999999888 6668899999999999999999997643321 11
Q ss_pred c--cc-ccccCCCHHHHHHHHHhCCCcEeEEEecC-----------CeEEEEEEecCC
Q 023974 229 P--DV-IVSDLPDQMTLQKAAGNHCFQIDNFVDES-----------GFYLVVLKFSKS 272 (274)
Q Consensus 229 ~--~~-si~~fps~~eL~~ll~~aGF~~v~~~d~~-----------~~yl~v~~~~~~ 272 (274)
. .. ......+.+++.++++++||+++...... .+++++.+|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 1 10 12345688999999999999998887654 577888888754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=178.36 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=120.7
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHH-HhCC-CcEEEEeCcHHHHHHHHHhCCC------ceEEEeeccCCCCCCCCccEEE
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVV-ESSP-SLLLVVHDSLFVLAGIKEKYDT------VKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~-~~~~-~~V~gVD~S~~ML~~Ar~k~~~------v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+.++.+|| ||||+|.++..++ ...+ .+|+|+|+|+.|++.|+++... ++++++|+.++|+. ++||+|+
T Consensus 114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~ 192 (305)
T 3ocj_A 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLT 192 (305)
T ss_dssp HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence 4567889999 9999999999885 3444 7999999999999999988542 89999999999987 9999999
Q ss_pred ecccCcCCCCHHH---HHHHHHHhcCCCCEEEEEcCCChh----------------HHHHH---HhhCcccccccCCCHH
Q 023974 183 LYFLPAMPFPLDQ---VFETLANRCSPGARVVISHPQGRE----------------ALQKQ---RKQFPDVIVSDLPDQM 240 (274)
Q Consensus 183 ~~f~l~~~~d~~~---al~el~RvLKPGGrlvIs~~~gr~----------------~l~~~---~~~~~~~si~~fps~~ 240 (274)
++..++++++++. ++++++|+|||||+++|.+..... ..... ...........+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 9988888888886 699999999999999997532100 00000 0111111233578999
Q ss_pred HHHHHHHhCCCcEeEEEecCCe--EEEEEEec
Q 023974 241 TLQKAAGNHCFQIDNFVDESGF--YLVVLKFS 270 (274)
Q Consensus 241 eL~~ll~~aGF~~v~~~d~~~~--yl~v~~~~ 270 (274)
++.++++++||+++...+.... ..++.+|+
T Consensus 273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999999999888864433 34455554
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=167.56 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=117.1
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEeccc--C
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFL--P 187 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~--l 187 (274)
.++.+|| ||||+|.++..+++.++ +|+|+|+|++|++.|+++. ++++++++|+.++|+.+++||+|+++.. +
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 4578999 99999999999988876 9999999999999999874 6799999999999988899999999977 6
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH-------HHhhCcc-c--------cc-------------ccCCC
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISHPQGREALQK-------QRKQFPD-V--------IV-------------SDLPD 238 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~-------~~~~~~~-~--------si-------------~~fps 238 (274)
++..++.++++++.++|||||++++.++.....+.. ...++.. . .. ...-.
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 195 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhc
Confidence 666688899999999999999999976542211111 0011100 0 00 01111
Q ss_pred HHHHHHHHHhCCCcEeEEEecCCe-EEEEEEe
Q 023974 239 QMTLQKAAGNHCFQIDNFVDESGF-YLVVLKF 269 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v~~~d~~~~-yl~v~~~ 269 (274)
.++.++++++||..+...+...+ |+.+..+
T Consensus 196 -~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 196 -KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp -HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred -hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 47889999999999998886644 7776654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-22 Score=178.16 Aligned_cols=105 Identities=12% Similarity=-0.033 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+.+.+.+.. ..+.+|| ||||||.++..|++.+ .+|+|||+|++||+.|++ .++++++++|++++|+++++||+|+
T Consensus 29 l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~-~~v~gvD~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~sfD~v~ 104 (257)
T 4hg2_A 29 LFRWLGEVA--PARGDALDCGCGSGQASLGLAEFF-ERVHAVDPGEAQIRQALR-HPRVTYAVAPAEDTGLPPASVDVAI 104 (257)
T ss_dssp HHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTC-SEEEEEESCHHHHHTCCC-CTTEEEEECCTTCCCCCSSCEEEEE
T ss_pred HHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhC-CEEEEEeCcHHhhhhhhh-cCCceeehhhhhhhcccCCcccEEE
Confidence 344444443 3457999 9999999999998877 499999999999999864 6889999999999999999999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.++||+ +++++++|++|+|||||+|++.
T Consensus 105 ~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 105 AAQAMHWF-DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp ECSCCTTC-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeeehhHh-hHHHHHHHHHHHcCCCCEEEEE
Confidence 99999887 7999999999999999999884
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=167.24 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=115.9
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----------CceEEEeeccC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----------TVKCWQGELIY 170 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----------~v~~~~gDae~ 170 (274)
+..+.+++.+...++.+|| ||||||.++..+++.++ .+|+|+|+|++|++.|+++.. +++++++|++.
T Consensus 16 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 16 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccc
Confidence 3445555555556788999 99999999999998776 799999999999999998853 68999999999
Q ss_pred CCCCCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh-----CcccccccCCCHHHHH
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREALQKQRKQ-----FPDVIVSDLPDQMTLQ 243 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~-----~~~~si~~fps~~eL~ 243 (274)
+++.+++||+|++..+++++.++ .++++++.|+|||||.++++.. ... ...... +.......+.+.+++.
T Consensus 96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (217)
T 3jwh_A 96 QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN--IEY-NVKFANLPAGKLRHKDHRFEWTRSQFQ 172 (217)
T ss_dssp CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB--HHH-HHHTC-----------CCSCBCHHHHH
T ss_pred ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC--ccc-chhhcccccccccccccccccCHHHHH
Confidence 98888999999999999998866 7999999999999998777632 111 111000 0001112345789999
Q ss_pred ----HHHHhCCCcEeEE
Q 023974 244 ----KAAGNHCFQIDNF 256 (274)
Q Consensus 244 ----~ll~~aGF~~v~~ 256 (274)
++++++||++...
T Consensus 173 ~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 173 NWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHHcCceEEEE
Confidence 8999999987544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=176.08 Aligned_cols=153 Identities=10% Similarity=0.053 Sum_probs=123.1
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
..+++.+++.+++.++.+|| ||||+|.++..+++. + .+|+|+|+|++|++.|+++. ++++++++|++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 153 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA- 153 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-
Confidence 44667888888899999999 999999999999887 5 59999999999999999873 35899999999986
Q ss_pred CCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHH-----------------HHHhhCcccccc
Q 023974 174 KWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQ-----------------KQRKQFPDVIVS 234 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~-----------------~~~~~~~~~si~ 234 (274)
++||+|++..+++++ .++.++++++.|+|||||+++|..+....... .+.... ....
T Consensus 154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 229 (318)
T 2fk8_A 154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEI--FPGG 229 (318)
T ss_dssp --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHT--STTC
T ss_pred --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhc--CCCC
Confidence 789999999999888 68899999999999999999996543211100 011111 0124
Q ss_pred cCCCHHHHHHHHHhCCCcEeEEEecC
Q 023974 235 DLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 235 ~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
.+|+.+++.++++++||+++.+.+..
T Consensus 230 ~~~s~~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 230 RLPSTEMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp CCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred cCCCHHHHHHHHHhCCCEEEEEEecc
Confidence 67899999999999999988776643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=182.23 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=117.9
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-------------CCceEEEeeccCC------
Q 023974 114 IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-------------DTVKCWQGELIYV------ 171 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-------------~~v~~~~gDae~L------ 171 (274)
+.++.+|| ||||||.++..+++. ++ .+|+|+|+|++|++.|+++. ++++|+++|++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 56789999 999999999999886 34 79999999999999999862 5899999999998
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC----hhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG----REALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g----r~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
|+.+++||+|+++.+++++.|+.+++++++|+|||||+|++.+... ...+......+. .....+.+.+++.++++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYG-ECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHH-TTCTTCCBHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhh-cccccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999965321 111111111111 13345677899999999
Q ss_pred hCCCcEeEEEec
Q 023974 248 NHCFQIDNFVDE 259 (274)
Q Consensus 248 ~aGF~~v~~~d~ 259 (274)
++||+++...+.
T Consensus 240 ~aGF~~v~~~~~ 251 (383)
T 4fsd_A 240 EAGFRDVRLVSV 251 (383)
T ss_dssp HTTCCCEEEEEE
T ss_pred HCCCceEEEEec
Confidence 999987766553
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-22 Score=179.75 Aligned_cols=140 Identities=6% Similarity=-0.019 Sum_probs=103.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC---------------------------------
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--------------------------------- 160 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--------------------------------- 160 (274)
.++.+|| ||||||.+...++.....+|+|+|+|++|++.|+++...
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 3678999 999999954333332236999999999999999885321
Q ss_pred --ceEEEeeccC-CCCC-----CCCccEEEecccCcC----CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 161 --VKCWQGELIY-VPDK-----WGPLDVVFLYFLPAM----PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 161 --v~~~~gDae~-LPf~-----~~sFD~V~~~f~l~~----~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
++++++|+++ +|+. +++||+|++++++++ +.++.+++++++|+|||||+|+|.......+ +...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~----~~~~ 225 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW----YLAG 225 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE----EEET
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce----EEcC
Confidence 3466779998 7754 467999999999988 6689999999999999999999963221110 0000
Q ss_pred cccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 229 PDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 229 ~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
.......+.+.+++.++++++||+++.+..
T Consensus 226 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 226 EARLTVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CeeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 111224577899999999999998887654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=162.11 Aligned_cols=149 Identities=13% Similarity=0.059 Sum_probs=119.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC--CCCCCCCccEEE
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY--VPDKWGPLDVVF 182 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~--LPf~~~sFD~V~ 182 (274)
..+++.+. .++.+|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++.. +++++|+++ +|+.+++||+|+
T Consensus 23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEE
T ss_pred HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEE
Confidence 34555555 6788999 9999999999998874 799999999999999998764 788999987 778889999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHH--HHH-HhhCcc-------cccccCCCHHHHHHHHHhCCCc
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREAL--QKQ-RKQFPD-------VIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l--~~~-~~~~~~-------~si~~fps~~eL~~ll~~aGF~ 252 (274)
+...+++..++.++++++.|+|||||++++..+...... ... ...|.. .....+.+.+++.++++++||+
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 178 (230)
T 3cc8_A 99 FGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178 (230)
T ss_dssp EESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEE
T ss_pred ECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999765433221 111 111211 0123567899999999999999
Q ss_pred EeEEEe
Q 023974 253 IDNFVD 258 (274)
Q Consensus 253 ~v~~~d 258 (274)
++....
T Consensus 179 ~~~~~~ 184 (230)
T 3cc8_A 179 ISKVDR 184 (230)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 887766
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-21 Score=173.64 Aligned_cols=175 Identities=11% Similarity=0.022 Sum_probs=119.0
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHH
Q 023974 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKE 156 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~ 156 (274)
..|++...+.|+...... ....+.+.+++.+...++ +|| ||||||.++..|++.+ .+|+|+|+|+.|++.|++
T Consensus 49 ~~y~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~ 122 (299)
T 3g2m_A 49 DFYDEGAADTYRDLIQDA----DGTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRK 122 (299)
T ss_dssp ECC--------------C----CCHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhccc----CccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHH
Confidence 334444445555444321 123356677777765554 999 9999999999998876 589999999999999998
Q ss_pred hC--------CCceEEEeeccCCCCCCCCccEEEec-ccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHH----
Q 023974 157 KY--------DTVKCWQGELIYVPDKWGPLDVVFLY-FLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREAL---- 221 (274)
Q Consensus 157 k~--------~~v~~~~gDae~LPf~~~sFD~V~~~-f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l---- 221 (274)
+. .+++++++|++++|+ +++||+|++. ..+++.. +..+++++++|+|||||+|+|..+......
T Consensus 123 ~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 201 (299)
T 3g2m_A 123 RLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPL 201 (299)
T ss_dssp HHHTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCC
T ss_pred HHhhcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccch
Confidence 74 358999999999998 7999999976 4466654 358999999999999999999754322110
Q ss_pred ---HHH-------HhhCc-------------------------ccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 222 ---QKQ-------RKQFP-------------------------DVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 222 ---~~~-------~~~~~-------------------------~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
... ...+. ......+.+.+++.++++++||+++...+-
T Consensus 202 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~ 274 (299)
T 3g2m_A 202 ERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPF 274 (299)
T ss_dssp CC-------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEE
T ss_pred hccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEec
Confidence 000 00000 001223569999999999999999988774
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=171.82 Aligned_cols=177 Identities=10% Similarity=0.079 Sum_probs=127.3
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAG 153 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~ 153 (274)
...+++...|.||..-+-+.- .+-..++.+.++||++|| +|||||.++..+++. ++ ++|+|||+|++|++.
T Consensus 44 ~~~~~~~e~r~w~p~rsklaa------~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~ 117 (233)
T 4df3_A 44 IFRYNGEEYREWNAYRSKLAA------ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD 117 (233)
T ss_dssp EEEETTEEEEECCTTTCHHHH------HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH
T ss_pred EEEcCCceeeeECCCchHHHH------HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence 445566788999974432111 222345667899999999 999999999999986 77 999999999999999
Q ss_pred HHHh---CCCceEEEeeccC---CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 154 IKEK---YDTVKCWQGELIY---VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 154 Ar~k---~~~v~~~~gDae~---LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
++++ .+++..+.+|+.. .|+..+++|+|++.+. +..+++.++.++.|+|||||+++|+...... .. ..
T Consensus 118 l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~--~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~--d~--~~ 191 (233)
T 4df3_A 118 LLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVA--QPEQAAIVVRNARFFLRDGGYMLMAIKARSI--DV--TT 191 (233)
T ss_dssp HHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEECCHH--HH--HT
T ss_pred HHHhhHhhcCeeEEEEeccCccccccccceEEEEEEecc--CChhHHHHHHHHHHhccCCCEEEEEEecccC--CC--CC
Confidence 9876 4578888888754 5677899999987643 3457889999999999999999996322111 00 00
Q ss_pred CcccccccCCCHHHHHHHHHhCCCcEeEEEec----CCeEEEEEEecC
Q 023974 228 FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE----SGFYLVVLKFSK 271 (274)
Q Consensus 228 ~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~----~~~yl~v~~~~~ 271 (274)
-.. . ..++..+.|+++||+.++..+- .++|+.+.+.+|
T Consensus 192 p~~---~---~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~~rR 233 (233)
T 4df3_A 192 EPS---E---VYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAVMRR 233 (233)
T ss_dssp CCC---H---HHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEECC--
T ss_pred ChH---H---HHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEEEeC
Confidence 000 0 0133456788999999888774 357888776543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=165.85 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=113.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----------CceEEEeeccCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----------TVKCWQGELIYV 171 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----------~v~~~~gDae~L 171 (274)
..+.+++.+...++.+|| ||||||.++..+++.++ .+|+|||+|+.|++.|+++.. +++++++|++.+
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 334444444445778999 99999999999988776 799999999999999998854 789999999999
Q ss_pred CCCCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhH-----HHHHHhhCcccccccCCCHHHHH-
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREA-----LQKQRKQFPDVIVSDLPDQMTLQ- 243 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~-----l~~~~~~~~~~si~~fps~~eL~- 243 (274)
++.+++||+|++..+++++.++ .++++++.|+|||||.+++... .... +.... +.......+.+.+++.
T Consensus 97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 173 (219)
T 3jwg_A 97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN-KEYNFHYGNLFEGN--LRHRDHRFEWTRKEFQT 173 (219)
T ss_dssp CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB-GGGGGCCCCT-------GGGCCTTSBCHHHHHH
T ss_pred ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc-hhhhhhhcccCccc--ccccCceeeecHHHHHH
Confidence 9888999999999999998866 6999999999999997766532 1110 01000 0011112345788999
Q ss_pred ---HHHHhCCCcEeEE
Q 023974 244 ---KAAGNHCFQIDNF 256 (274)
Q Consensus 244 ---~ll~~aGF~~v~~ 256 (274)
++++++||++...
T Consensus 174 ~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 174 WAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHCCcEEEEE
Confidence 8899999976554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=183.25 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=129.9
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC---ceEEEeeccCCCCCCCCc
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT---VKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~---v~~~~gDae~LPf~~~sF 178 (274)
...+.+++.+.+.++.+|| ||||+|.++..+++.+. +|+|+|+|++|++.|+++... ..+..++++.+|+.+++|
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~f 172 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPA 172 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCE
Confidence 3556778888888999999 99999999999988764 999999999999999988322 224467888899989999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc--cccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD--VIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~--~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
|+|++..++++++|+.+++++++|+|||||+++|..+........ ..+.. .....+.+.+++.++++++||+++..
T Consensus 173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAK--TSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHH--TCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhh--cchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 999999999999999999999999999999999976543222111 11111 11234678999999999999998887
Q ss_pred EecC---CeEEEEEEecC
Q 023974 257 VDES---GFYLVVLKFSK 271 (274)
Q Consensus 257 ~d~~---~~yl~v~~~~~ 271 (274)
..-+ +.+.+...+..
T Consensus 251 ~~~~~~~g~l~~~~~~~~ 268 (416)
T 4e2x_A 251 QRLPVHGGEVRYTLARQG 268 (416)
T ss_dssp EEECGGGSEEEEEEEETT
T ss_pred EEccCCCCEEEEEEEeCC
Confidence 7633 44555555544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=160.67 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=113.8
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+++.+...++.+|| +|||+|.++..+++.+ .+|+|+|+|+.|++.|+++. ++++++++|++++|+ +++||+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~ 100 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDF 100 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEE
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceE
Confidence 445556666788999 9999999999998875 59999999999999999763 478999999999998 899999
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
|++...+++.. ++.++++++.|+|||||+++|.++..... +.. .......+.+++.+++++ |+++.+.
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTAD-------YPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSS-------SCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCC-------cCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 99998888876 78899999999999999988854332211 110 011234578999999986 9998887
Q ss_pred ec
Q 023974 258 DE 259 (274)
Q Consensus 258 d~ 259 (274)
+.
T Consensus 172 ~~ 173 (199)
T 2xvm_A 172 ED 173 (199)
T ss_dssp CC
T ss_pred cc
Confidence 65
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.3e-21 Score=164.74 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=117.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC------ceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT------VKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~------v~~~~gDae~LPf~~~ 176 (274)
.+..++....++++ +|| ||||+|.++..+++.+ .+|+|+|+|+.|++.|+++.+. ++++++|+++++. ++
T Consensus 55 ~l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~ 131 (235)
T 3lcc_A 55 LIVHLVDTSSLPLG-RALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-TE 131 (235)
T ss_dssp HHHHHHHTTCSCCE-EEEEETCTTCHHHHHHCBTT-EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-SS
T ss_pred HHHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-CC
Confidence 44566666666554 999 9999999999997755 5899999999999999998653 8999999999884 56
Q ss_pred CccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 177 PLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 177 sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+||+|++..++++++ ++.++++++.|+|||||++++........ .. ......+.+++.++++++||+++
T Consensus 132 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--------~~-~~~~~~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 132 LFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH--------VG-GPPYKVDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp CEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC--------CS-CSSCCCCHHHHHHHHGGGTEEEE
T ss_pred CeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc--------CC-CCCccCCHHHHHHHHHHcCCeEE
Confidence 999999999999887 88999999999999999999864321100 00 11123578999999999999998
Q ss_pred EEEecCC
Q 023974 255 NFVDESG 261 (274)
Q Consensus 255 ~~~d~~~ 261 (274)
.......
T Consensus 203 ~~~~~~~ 209 (235)
T 3lcc_A 203 SVEENPH 209 (235)
T ss_dssp EEEECTT
T ss_pred EEEecCC
Confidence 8876544
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-21 Score=167.62 Aligned_cols=158 Identities=11% Similarity=-0.007 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHH------HHHHHHHhC------CCceEEE
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLF------VLAGIKEKY------DTVKCWQ 165 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~------ML~~Ar~k~------~~v~~~~ 165 (274)
...+..++++.+.+.++.+|| ||||+|.++..+++. ++ .+|+|+|+|++ |++.|+++. +++++++
T Consensus 28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 334667888888999999999 999999999999887 56 79999999998 999999874 4689999
Q ss_pred ee---ccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC----hhHH----HHHHh-----hCc
Q 023974 166 GE---LIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG----REAL----QKQRK-----QFP 229 (274)
Q Consensus 166 gD---ae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g----r~~l----~~~~~-----~~~ 229 (274)
+| .+.+|+.+++||+|++...++++.+++.+++.+.++++|||++++.+... .... ..+.. ...
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred CChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 99 67788889999999999999999999887777777777799999964321 1111 11111 111
Q ss_pred --ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 230 --DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 230 --~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
......+++.+++.++++++||+++...+
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECCC
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEEE
Confidence 12334689999999999999999876654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=169.65 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHhCC-CCCCCeEE-EEcCc---hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGE-IDESSKVL-VSISS---EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~-~~~~~rVL-vGcGT---G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~ 170 (274)
..+.++.++++.+. ..+..+|| ||||| |.++..+.+..+ .+|+|||+|+.||+.|+++. ++++++++|+.+
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 60 ENRKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred HHhHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence 34456667766654 33447999 99999 998877777666 79999999999999999885 568999999976
Q ss_pred CC-----------CCCCCccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhCccc-ccc
Q 023974 171 VP-----------DKWGPLDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQFPDV-IVS 234 (274)
Q Consensus 171 LP-----------f~~~sFD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~~~~-si~ 234 (274)
.+ +..++||+|+++.++|+++| +.+++++++|+|||||+|+|++.... ....+....|... ...
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEG 219 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCC
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCC
Confidence 31 22358999999999999887 89999999999999999999765432 1223333223211 134
Q ss_pred cCCCHHHHHHHHHhCCCcEeE
Q 023974 235 DLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 235 ~fps~~eL~~ll~~aGF~~v~ 255 (274)
.+.+.+|+.+++ .||+++.
T Consensus 220 ~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 220 WARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCBCHHHHHHTT--TTCEECT
T ss_pred ccCCHHHHHHHh--CCCeEcc
Confidence 567999999999 5998765
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=168.98 Aligned_cols=135 Identities=7% Similarity=-0.011 Sum_probs=106.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----------------------CCceEEEeecc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----------------------DTVKCWQGELI 169 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----------------------~~v~~~~gDae 169 (274)
...++.+|| +|||+|..+..|++.+. +|+|||+|+.||+.|+++. ++++|+++|+.
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 345788999 99999999999998874 9999999999999998765 46899999999
Q ss_pred CCCCCC-CCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEE-EcCCChhHHHHHHhhCcccccccCCCHHHHHHH
Q 023974 170 YVPDKW-GPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVI-SHPQGREALQKQRKQFPDVIVSDLPDQMTLQKA 245 (274)
Q Consensus 170 ~LPf~~-~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvI-s~~~gr~~l~~~~~~~~~~si~~fps~~eL~~l 245 (274)
++|+.+ ++||+|++..++.+++ +.++++++++|+|||||++++ +...... ... ......+.+|+.++
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~-------~~~--g~~~~~~~~el~~~ 214 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPT-------KHA--GPPFYVPSAELKRL 214 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT-------SCC--CSSCCCCHHHHHHH
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCc-------cCC--CCCCCCCHHHHHHH
Confidence 999875 8999999887776654 456799999999999999964 3222111 000 01112578999999
Q ss_pred HHhCCCcEeEEEe
Q 023974 246 AGNHCFQIDNFVD 258 (274)
Q Consensus 246 l~~aGF~~v~~~d 258 (274)
++. +|+++....
T Consensus 215 l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 215 FGT-KCSMQCLEE 226 (252)
T ss_dssp HTT-TEEEEEEEE
T ss_pred hhC-CeEEEEEec
Confidence 987 598877654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=160.10 Aligned_cols=147 Identities=13% Similarity=-0.001 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sF 178 (274)
++..++..+ .++ +|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++. .++.++++|++++|+.+++|
T Consensus 20 ~l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 20 FLVSVANQI--PQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp SHHHHHHHS--CSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTC
T ss_pred HHHHHHHhC--CCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCc
Confidence 455666544 466 999 9999999999998876 49999999999999999874 37899999999999989999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
|+|++++......++.++++++.|+|||||+++|..+..... . ...........+.+.+++.++++ ||+++...+
T Consensus 96 D~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 96 EGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL-Q--YNTGGPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp SEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG-G--GTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred cEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-c--CCCCCCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 999997543334578899999999999999999975432211 0 00111112346889999999998 999888665
Q ss_pred c
Q 023974 259 E 259 (274)
Q Consensus 259 ~ 259 (274)
.
T Consensus 171 ~ 171 (202)
T 2kw5_A 171 L 171 (202)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=164.55 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~ 175 (274)
...++.++++.....++.+|| +|||||.++..|++.+ .+|+|+|+|++|++.|+++. .+++++++|+.++|+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~- 103 (252)
T 1wzn_A 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK- 103 (252)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-
T ss_pred HHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-
Confidence 344677778777777888999 9999999999998876 49999999999999999874 2689999999999875
Q ss_pred CCccEEEeccc-CcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHH---------------------H----Hh-
Q 023974 176 GPLDVVFLYFL-PAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQK---------------------Q----RK- 226 (274)
Q Consensus 176 ~sFD~V~~~f~-l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~---------------------~----~~- 226 (274)
++||+|++.+. +++. .++.++++++.++|||||++++..+........ . ..
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKL 183 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeeccccccccee
Confidence 78999998643 3332 356799999999999999999854321000000 0 00
Q ss_pred --------hCcc--------cccccCCCHHHHHHHHHhCCCcEeEEEe--------cCCeEEEEEEec
Q 023974 227 --------QFPD--------VIVSDLPDQMTLQKAAGNHCFQIDNFVD--------ESGFYLVVLKFS 270 (274)
Q Consensus 227 --------~~~~--------~si~~fps~~eL~~ll~~aGF~~v~~~d--------~~~~yl~v~~~~ 270 (274)
.... ....++.+.+++. +++++||+++..-. ++..+++|++|+
T Consensus 184 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~ 250 (252)
T 1wzn_A 184 RFKRLVQILRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAK 250 (252)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECC
T ss_pred eheeeeeecccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEee
Confidence 0000 0123578899997 89999998877633 356788888875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-21 Score=177.65 Aligned_cols=144 Identities=16% Similarity=0.232 Sum_probs=105.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-----------ceEEEeec------cCC--CCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-----------VKCWQGEL------IYV--PDK 174 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-----------v~~~~gDa------e~L--Pf~ 174 (274)
.++.+|| ||||||..+..+++.+..+|+|||+|++||++|++++++ ++|.++|+ ++| ++.
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 3578999 999999765555554436899999999999999987532 45778887 555 356
Q ss_pred CCCccEEEecccCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH--------------hh----------
Q 023974 175 WGPLDVVFLYFLPAMP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQR--------------KQ---------- 227 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~--------------~~---------- 227 (274)
+++||+|+|.+++|+. .+.++++++++|+|||||+|+++.+. +..+.... ..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD-GDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC-HHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC-HHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 7899999999988864 46689999999999999999997653 22111100 00
Q ss_pred ----C-cc----cccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 228 ----F-PD----VIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 228 ----~-~~----~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
| +. .....+.+.++|.++++++||+++....-
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 0 00 01124777899999999999998887653
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=160.14 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=98.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-cCCCCC-CCCccEEEecccCcCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-IYVPDK-WGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-e~LPf~-~~sFD~V~~~f~l~~~~ 191 (274)
.++.+|| ||||||.++..+++.+ .+|+|+|+|+.|++.|+++.++++++++|+ +.+|+. +++||+|+++ .
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~ 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C
Confidence 6788999 9999999999998886 599999999999999999999999999999 679998 8999999987 4
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++.++++++.|+|||||+++.. ..+.+.+++.+.++++||+......
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~--------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFLYV--------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEEEE--------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEe--------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 7789999999999999999921 1122345677777777777665543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.7e-20 Score=165.98 Aligned_cols=138 Identities=8% Similarity=0.015 Sum_probs=109.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-------CCCceEEEeeccCCCCCC------C
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-------YDTVKCWQGELIYVPDKW------G 176 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-------~~~v~~~~gDae~LPf~~------~ 176 (274)
...++.+|| ||||||.++..+++.. + .+|+|+|+|+.|++.|+++ .++++++++|++++|+.+ +
T Consensus 33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 346788999 9999999999998753 4 8999999999999999986 568999999999999888 8
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE---EcCC--C----hhHHHHHHhhCcccccccC--CCHHHHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI---SHPQ--G----REALQKQRKQFPDVIVSDL--PDQMTLQKA 245 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI---s~~~--g----r~~l~~~~~~~~~~si~~f--ps~~eL~~l 245 (274)
+||+|++..+++++ ++.++++++.|+|||||+|+| .++. . ...+..+... .......+ |..+.+.+.
T Consensus 113 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~p~~~~~~~~ 190 (299)
T 3g5t_A 113 KIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYG-KQGLGPYWEQPGRSRLRNM 190 (299)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHC-TTTTGGGSCTTHHHHHHTT
T ss_pred CeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccC-cccccchhhchhhHHHHHh
Confidence 99999999999999 999999999999999999998 3221 1 1112222111 01111223 778889999
Q ss_pred HHhCCCc
Q 023974 246 AGNHCFQ 252 (274)
Q Consensus 246 l~~aGF~ 252 (274)
+++.||.
T Consensus 191 l~~~gfp 197 (299)
T 3g5t_A 191 LKDSHLD 197 (299)
T ss_dssp TTTCCCC
T ss_pred hhccCCC
Confidence 9999993
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=166.18 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=111.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
.+.+++.... .++.+|| ||||||.++..+++.+ .+|+|+|+|++|++.|+++... .++++|++++|+.+++||+|+
T Consensus 43 ~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~ 119 (260)
T 2avn_A 43 LIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVL 119 (260)
T ss_dssp HHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEE
T ss_pred HHHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEE
Confidence 3444444432 3778999 9999999999998876 5999999999999999998764 389999999999999999999
Q ss_pred ecc-cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH---------hhCcc-c---------ccccCCCHHHH
Q 023974 183 LYF-LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQR---------KQFPD-V---------IVSDLPDQMTL 242 (274)
Q Consensus 183 ~~f-~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~---------~~~~~-~---------si~~fps~~eL 242 (274)
+.. ..++..++.++++++.|+|||||+++|..+.....+.... ..... . ....+.+.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDL 199 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGG
T ss_pred EcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHH
Confidence 975 4566678999999999999999999997543111111110 00000 0 01137788999
Q ss_pred HHHHHhCCCcEeEEEe
Q 023974 243 QKAAGNHCFQIDNFVD 258 (274)
Q Consensus 243 ~~ll~~aGF~~v~~~d 258 (274)
.++ +||+++....
T Consensus 200 ~~l---aGf~~~~~~~ 212 (260)
T 2avn_A 200 DSL---EGFETVDIRG 212 (260)
T ss_dssp SSC---TTEEEEEEEE
T ss_pred HHh---cCceEEEEEC
Confidence 877 9999887664
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=156.71 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=114.2
Q ss_pred HHHH---HHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---CCceEEEeeccC----CC
Q 023974 105 IDQI---ISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIY----VP 172 (274)
Q Consensus 105 ~~~l---l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~----LP 172 (274)
...+ ++.+.+.++.+|| +|||||.++..+++..+ ++|+|||+|++|++.|+++. +++.++++|+++ +|
T Consensus 60 ~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~ 139 (230)
T 1fbn_A 60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN 139 (230)
T ss_dssp HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT
T ss_pred HHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc
Confidence 3556 5666778899999 99999999999998854 79999999999999998764 578999999998 88
Q ss_pred CCCCCccEEEecccCcCCCCH---HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhC
Q 023974 173 DKWGPLDVVFLYFLPAMPFPL---DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~---~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~a 249 (274)
+. ++||+|+. ++.++ +.+++++.|+|||||+++|.... ... ........ ...+++. +++++
T Consensus 140 ~~-~~~D~v~~-----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-~~~-------~~~~~~~~-~~~~~l~-~l~~~ 203 (230)
T 1fbn_A 140 IV-EKVDVIYE-----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKA-RSI-------DVTKDPKE-IFKEQKE-ILEAG 203 (230)
T ss_dssp TS-CCEEEEEE-----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG-GGT-------CSSSCHHH-HHHHHHH-HHHHH
T ss_pred cC-ccEEEEEE-----ecCChhHHHHHHHHHHHhCCCCcEEEEEEec-CCC-------CCCCCHHH-hhHHHHH-HHHHC
Confidence 76 89999993 33455 77899999999999999996110 000 00000000 0136787 88999
Q ss_pred CCcEeEEEecCC----eEEEEEEecC
Q 023974 250 CFQIDNFVDESG----FYLVVLKFSK 271 (274)
Q Consensus 250 GF~~v~~~d~~~----~yl~v~~~~~ 271 (274)
||+.+...+... +|+++++|++
T Consensus 204 Gf~~~~~~~~~~~~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 204 GFKIVDEVDIEPFEKDHVMFVGIWEG 229 (230)
T ss_dssp TEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred CCEEEEEEccCCCccceEEEEEEeCC
Confidence 999988877544 6888888864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=165.83 Aligned_cols=164 Identities=10% Similarity=0.046 Sum_probs=128.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~ 175 (274)
..+.+++.+.+.++.+|| ||||+|.++..++++.| .+++++|+ +.|++.|+++ .+ +++++++|+.+.|+++
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC
Confidence 345777788888889999 99999999999999877 79999999 9999999976 33 3999999999988765
Q ss_pred CCccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCCh----hHHHHHHhhCc----ccccccCCCHHHHHHH
Q 023974 176 GPLDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGR----EALQKQRKQFP----DVIVSDLPDQMTLQKA 245 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr----~~l~~~~~~~~----~~si~~fps~~eL~~l 245 (274)
. |+|++...++++.| ..+++++++|+|||||+++|.+.... .........+. ......|.+.+++.++
T Consensus 257 ~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~l 334 (359)
T 1x19_A 257 A--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 334 (359)
T ss_dssp C--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHH
T ss_pred C--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHH
Confidence 4 99999999988777 78999999999999999988652211 11111111111 1123346899999999
Q ss_pred HHhCCCcEeEEEecCCeEEEEEEec
Q 023974 246 AGNHCFQIDNFVDESGFYLVVLKFS 270 (274)
Q Consensus 246 l~~aGF~~v~~~d~~~~yl~v~~~~ 270 (274)
++++||+++.........+++++|+
T Consensus 335 l~~aGf~~v~~~~~~~~~vi~a~kp 359 (359)
T 1x19_A 335 LESLGYKDVTMVRKYDHLLVQAVKP 359 (359)
T ss_dssp HHHHTCEEEEEEEETTEEEEEEECC
T ss_pred HHHCCCceEEEEecCCceEEEEeCC
Confidence 9999999888877666667777664
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=166.71 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
+.+.+++.+.+.++.+|| ||||||.++..+++..+ .+++++|+ +.|++.|+++. ++++++++|+.+ +++.
T Consensus 170 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 170 AYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp TTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC
T ss_pred HHHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC
Confidence 456777777888889999 99999999999999876 79999999 99999999863 268999999876 3332
Q ss_pred CCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcC--CCh----hHHHHHHhhCc-ccccccCCCHHHHHHHH
Q 023974 176 GPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHP--QGR----EALQKQRKQFP-DVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~--~gr----~~l~~~~~~~~-~~si~~fps~~eL~~ll 246 (274)
.||+|++..+++++.+.+ +++++++|+|||||+++|.+. ... .........+. ........+.+++.+++
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 326 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA 326 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHH
Confidence 399999999998887765 899999999999999999765 211 11111111110 01124567999999999
Q ss_pred HhCCCcEeEEEecCCe------EEEEEEecC
Q 023974 247 GNHCFQIDNFVDESGF------YLVVLKFSK 271 (274)
Q Consensus 247 ~~aGF~~v~~~d~~~~------yl~v~~~~~ 271 (274)
+++||+++........ .++++++.+
T Consensus 327 ~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 327 GSAGLALASERTSGSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp HTTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred HHCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence 9999998887775543 567776654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=158.75 Aligned_cols=163 Identities=10% Similarity=0.004 Sum_probs=119.9
Q ss_pred ccccccCCccchhHHHHHHHHHHhC------CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--
Q 023974 88 WSFLDSDELNFKEHIQRIDQIISAG------EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-- 157 (274)
Q Consensus 88 Wd~~~~~~~~~~~~~~w~~~ll~~~------~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-- 157 (274)
|+..............|.+.+++.+ .+.++.+|| ||||||.++..++...+ .+|+|||+|++|++.|+++
T Consensus 36 ~~~~~~l~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~ 115 (240)
T 1xdz_A 36 WNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSE 115 (240)
T ss_dssp HHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HhHhcCccccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 6654333322223444665555443 345778999 99999999999987655 7999999999999999875
Q ss_pred ---CCCceEEEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccc
Q 023974 158 ---YDTVKCWQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDV 231 (274)
Q Consensus 158 ---~~~v~~~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~ 231 (274)
.++++++++|++++++. +++||+|++.. +.++..+++++.++|||||++++.+... ...+
T Consensus 116 ~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~--~~~~-------- 181 (240)
T 1xdz_A 116 ALQLENTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALKAAS--AEEE-------- 181 (240)
T ss_dssp HHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC---CHHH--------
T ss_pred HcCCCCEEEEeccHHHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCC--chHH--------
Confidence 35799999999999864 68999999865 3688999999999999999999864321 1011
Q ss_pred ccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEecC
Q 023974 232 IVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKFSK 271 (274)
Q Consensus 232 si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~~~ 271 (274)
.+++.+.++++||++..... +...++++++|.+
T Consensus 182 -------~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 182 -------LNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (240)
T ss_dssp -------HHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred -------HHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEecC
Confidence 24677889999998766543 2345677776653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=152.81 Aligned_cols=149 Identities=7% Similarity=0.110 Sum_probs=115.2
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCccEEEeccc
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
.+...++.+|| ||||||.++..+++.+ .+|+|+|+|+.|++.|+++. ++++++++|+++++ .+++||+|+++.+
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEV 123 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESC
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccH
Confidence 45677788999 9999999999998877 49999999999999999986 46899999999999 6899999999999
Q ss_pred CcCCCCH---HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe---EEE---
Q 023974 187 PAMPFPL---DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID---NFV--- 257 (274)
Q Consensus 187 l~~~~d~---~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v---~~~--- 257 (274)
++++.++ .++++++.|+|||||+++|+++..+ .. ..|.. ....+.+..++.+. +..+ ...
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~----~~~~~-----~~~~~~~~~~~~~~-~~~~e~~~~~~~~ 192 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA-TC----RRWGH-----VAGAETVITILTEA-LTEVERVQCQGQS 192 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH-HH----HHTTC-----SCCHHHHHHHHHHH-SEEEEEEEEECSS
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC-cc----hhhhh-----hhhHHHHHHHHHhh-ccceEEEeccCCc
Confidence 9999887 5779999999999999999866432 11 12211 23355666666542 4332 222
Q ss_pred ecCCeEEEEEEecCC
Q 023974 258 DESGFYLVVLKFSKS 272 (274)
Q Consensus 258 d~~~~yl~v~~~~~~ 272 (274)
.++++++.+++++..
T Consensus 193 ~~~d~~l~~~~~~~~ 207 (216)
T 3ofk_A 193 ADEDCLLARFRNPER 207 (216)
T ss_dssp TTCEEEEEEEECCC-
T ss_pred cccchhHHHHhCCcc
Confidence 466778888888753
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=155.38 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=108.6
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
..++.+|| ||||||.++..+. .+|+|+|+|+. ++.+.++|++++|+.+++||+|++..++++ .+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~~ 129 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TN 129 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCCCS-SC
T ss_pred cCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhccc-cC
Confidence 46778999 9999999988872 48999999987 688999999999999999999999988886 79
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec-CCeEEEEEEecC
Q 023974 193 LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE-SGFYLVVLKFSK 271 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~-~~~yl~v~~~~~ 271 (274)
+.++++++.|+|||||+++|.+... .+++.+++.++++++||+++..... ..+++++++|..
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~-----------------~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSS-----------------RFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTG 192 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGG-----------------GCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCC-----------------CCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecC
Confidence 9999999999999999999985421 2358899999999999998876654 456788888865
Q ss_pred C
Q 023974 272 S 272 (274)
Q Consensus 272 ~ 272 (274)
.
T Consensus 193 ~ 193 (215)
T 2zfu_A 193 P 193 (215)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=167.55 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=111.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----------------------------------
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------------------------------- 158 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------------------------------- 158 (274)
++.+|| ||||+|.++..+++..+ .+|+|||+|+.||+.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 678999 99999999999999854 79999999999999999873
Q ss_pred ----------------------------CCceEEEeeccCCC-----CCCCCccEEEecccCcCCC------CHHHHHHH
Q 023974 159 ----------------------------DTVKCWQGELIYVP-----DKWGPLDVVFLYFLPAMPF------PLDQVFET 199 (274)
Q Consensus 159 ----------------------------~~v~~~~gDae~LP-----f~~~sFD~V~~~f~l~~~~------d~~~al~e 199 (274)
.+++|+++|+...+ +.+++||+|+|..+++|+. ++.+++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 36899999998655 6789999999998876654 78899999
Q ss_pred HHHhcCCCCEEEEEcCCChhHH------HHHHhhCcccccccCCCHHHHHHHHHh--CCCcEeEEEecCC----e---EE
Q 023974 200 LANRCSPGARVVISHPQGREAL------QKQRKQFPDVIVSDLPDQMTLQKAAGN--HCFQIDNFVDESG----F---YL 264 (274)
Q Consensus 200 l~RvLKPGGrlvIs~~~gr~~l------~~~~~~~~~~si~~fps~~eL~~ll~~--aGF~~v~~~d~~~----~---yl 264 (274)
++|+|||||+|+|....+.... ......+. ...|. ++++..++.+ +||+.++...... . -+
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~---~~~~~-p~~~~~~L~~~~~GF~~~~~~~~~~~~~~g~~r~i 281 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY---RIQLK-PEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPV 281 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHH---HCCCC-GGGHHHHHTSTTTCCCEEEEC-----------CCC
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhh---cEEEc-HHHHHHHHHhcCCCceEEEEeccCCCCCCCccceE
Confidence 9999999999999743221110 01111111 11222 5799999999 9998777665421 1 25
Q ss_pred EEEEecC
Q 023974 265 VVLKFSK 271 (274)
Q Consensus 265 ~v~~~~~ 271 (274)
.+.+|+.
T Consensus 282 ~~~~k~~ 288 (292)
T 3g07_A 282 YLFHKAR 288 (292)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 5666654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-20 Score=154.83 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCC---CCCCccEEEec
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPD---KWGPLDVVFLY 184 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf---~~~sFD~V~~~ 184 (274)
..+++.+|++|| ||||+ +++|+|++|++.|+++.+ ++++.++|++++|+ .+++||+|+++
T Consensus 6 ~~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 6 ADFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp TTTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred hccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 345789999999 99997 249999999999999975 59999999999998 88999999999
Q ss_pred ccCcCC-CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 185 FLPAMP-FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 185 f~l~~~-~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
++++++ .|+++++++++|+|||||+|++.++..... . ......+.+++.++++++|| +.
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~--------~--~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAV--------D--NNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSS--------C--SSSSSCCHHHHHHHHHHTTC-EE
T ss_pred ChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccc--------c--cccccCCHHHHHHHHHHCCC-cE
Confidence 999998 899999999999999999999976532110 0 01223467999999999999 44
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-19 Score=149.15 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=106.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~ 176 (274)
....+++.+.+.++.+|| +|||||.++..+++.++ .+|+|+|+|++|++.|+++. ++++++++|+.+.....+
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 107 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP 107 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence 446678888999999999 99999999999999886 89999999999999999863 578999999977655558
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
+||+|++..... ++.++++++.|+|||||++++..... . +.+++.++++++||+
T Consensus 108 ~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~-~------------------~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 108 DPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL-D------------------TLTKAVEFLEDHGYM 161 (204)
T ss_dssp CCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH-H------------------HHHHHHHHHHHTTCE
T ss_pred CCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc-c------------------cHHHHHHHHHHCCCc
Confidence 899999987664 78999999999999999999974421 1 235777888899983
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=156.81 Aligned_cols=143 Identities=6% Similarity=-0.089 Sum_probs=111.0
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCCCCC-----CCccEEEec
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVPDKW-----GPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~-----~sFD~V~~~ 184 (274)
.+.++.+|| ||||||.++..|++.++ +|+|||+|+.|++.|+++.+ +++++++|++++++.. .+||+|++.
T Consensus 53 ~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 53 LFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp TSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred ccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 357888999 99999999999999886 99999999999999999876 6899999999976542 359999999
Q ss_pred ccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCChh--HHHHHHhhC---c--------ccccccCCCHHHHHHHHHhC
Q 023974 185 FLPAMPF--PLDQVFETLANRCSPGARVVISHPQGRE--ALQKQRKQF---P--------DVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 185 f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr~--~l~~~~~~~---~--------~~si~~fps~~eL~~ll~~a 249 (274)
..+++.. ++.++++++.|+|||||+++|.+..... .+....... + ........+.+++.+++ +
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a 209 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--P 209 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--T
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--C
Confidence 9999988 7889999999999999999887543321 111111110 0 00011234789999998 8
Q ss_pred CCcEeEEEe
Q 023974 250 CFQIDNFVD 258 (274)
Q Consensus 250 GF~~v~~~d 258 (274)
||+++...+
T Consensus 210 Gf~~~~~~~ 218 (245)
T 3ggd_A 210 DFEILSQGE 218 (245)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEeccc
Confidence 999877543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-21 Score=168.15 Aligned_cols=136 Identities=13% Similarity=0.036 Sum_probs=100.6
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCC--CCCCCCccEEEe---
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYV--PDKWGPLDVVFL--- 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~L--Pf~~~sFD~V~~--- 183 (274)
..+|.||| ||||+|..+..+++..+.+|+|||+|++|++.|+++.. +++++++|++++ ++.+++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46788999 99999999999987766789999999999999998642 478899999875 578899999974
Q ss_pred --cccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 184 --YFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 184 --~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
.+...+..+++.+++|++|+|||||+|++.+..+ .-...+..|... .. ...+.....|.++||++.
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~--~~~~~~~~~~~~--~~-~~~~~~~~~L~eaGF~~~ 205 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS--WGELMKSKYSDI--TI-MFEETQVPALLEAGFRRE 205 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH--HHHHTTTTCSCH--HH-HHHHHTHHHHHHHTCCGG
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEecCC--chhhhhhhhhhh--hh-hhHHHHHHHHHHcCCeEE
Confidence 3456677789999999999999999998854211 111111122110 00 113455667888999754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=152.77 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=111.3
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
+.++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++. .++++.++|+.+.+ +++||+|+++..+
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcH
Confidence 56788999 9999999999988764469999999999999999863 34899999997654 5899999998766
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVL 267 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~ 267 (274)
++ ..++++++.|+|||||++++.+.... +.+++.++++++||+++.....++.|.++-
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~-------------------~~~~~~~~~~~~Gf~~~~~~~~~~w~~~~~ 193 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDYL-------------------QLPKIEQALAENSFQIDLKMRAGRWIGLAI 193 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEGG-------------------GHHHHHHHHHHTTEEEEEEEEETTEEEEEE
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCcc-------------------cHHHHHHHHHHcCCceEEeeccCCEEEEEE
Confidence 54 47899999999999999999643211 357888999999999999888888877777
Q ss_pred EecC
Q 023974 268 KFSK 271 (274)
Q Consensus 268 ~~~~ 271 (274)
+++.
T Consensus 194 ~~~~ 197 (205)
T 3grz_A 194 SRKH 197 (205)
T ss_dssp EECC
T ss_pred eccc
Confidence 7664
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=149.37 Aligned_cols=154 Identities=11% Similarity=0.104 Sum_probs=106.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC-CCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP-DKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP-f~~~ 176 (274)
+.+.++. ..+.++.+|| +|||||.++..+++.+ .+|+|||+|++|++.|+++. ++++++++|++.++ +.++
T Consensus 11 ~~~~~l~-~~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 88 (185)
T 3mti_A 11 MSHDFLA-EVLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVRE 88 (185)
T ss_dssp HHHHHHH-TTCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCS
T ss_pred HHHHHHH-HhCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccC
Confidence 4555554 3567889999 9999999999998874 69999999999999999874 57899999998864 4578
Q ss_pred CccEEEecccCc---------CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 177 PLDVVFLYFLPA---------MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 177 sFD~V~~~f~l~---------~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
+||+|++++... ...+..++++++.|+|||||+++|....+...-...... ..++.+.+.
T Consensus 89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-----------~~~~~~~l~ 157 (185)
T 3mti_A 89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDA-----------VLEYVIGLD 157 (185)
T ss_dssp CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHH-----------HHHHHHHSC
T ss_pred CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHH-----------HHHHHHhCC
Confidence 999999874321 223556889999999999999999643221100000000 123334444
Q ss_pred hCCCcEeEEEecCC----eEEEEEEec
Q 023974 248 NHCFQIDNFVDESG----FYLVVLKFS 270 (274)
Q Consensus 248 ~aGF~~v~~~d~~~----~yl~v~~~~ 270 (274)
..+|.+..+.--.. -|++++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ 184 (185)
T 3mti_A 158 QRVFTAMLYQPLNQINTPPFLVMLEKL 184 (185)
T ss_dssp TTTEEEEEEEESSCSSCCCEEEEEEEC
T ss_pred CceEEEEEehhhccCCCCCeEEEEEec
Confidence 56788777665433 366666653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=151.19 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=94.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCccE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+..++... +.++.+|| +|||+|.++..+++.++.+|+|+|+|+.|++.|+++. ++++++++|+.++|+.+++||+
T Consensus 32 ~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 110 (215)
T 2pxx_A 32 FRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDV 110 (215)
T ss_dssp HHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEE
T ss_pred HHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccE
Confidence 44444332 46788999 9999999999998876568999999999999999986 4689999999999999999999
Q ss_pred EEecccCcCC---------------CCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 181 VFLYFLPAMP---------------FPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 181 V~~~f~l~~~---------------~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
|++...++++ .++.++++++.|+|||||++++..+..
T Consensus 111 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 111 VLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 9987655332 366899999999999999999986643
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=165.51 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=110.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------------CceEEEeeccCCC----CC--C
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------------TVKCWQGELIYVP----DK--W 175 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------------~v~~~~gDae~LP----f~--~ 175 (274)
.++.+|| ||||||.++..+++....+|+|+|+|++|++.|++++. +++++++|+++++ +. +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4778999 99999999999987544799999999999999998743 5789999999987 54 4
Q ss_pred CCccEEEecccCcCC-C---CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh----C---------cc--------
Q 023974 176 GPLDVVFLYFLPAMP-F---PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ----F---------PD-------- 230 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~-~---d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~----~---------~~-------- 230 (274)
++||+|++++++||+ . ++..++++++|+|||||+++++.+........+... + ..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 599999999999987 3 457999999999999999999866543222222111 0 00
Q ss_pred --------c---ccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 231 --------V---IVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 231 --------~---si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
. ......+.+++.++++++||+++...+-
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 0 0122467889999999999999887653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=162.81 Aligned_cols=134 Identities=13% Similarity=0.087 Sum_probs=98.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCC--CCCCCCccEEEe-cc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYV--PDKWGPLDVVFL-YF 185 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~L--Pf~~~sFD~V~~-~f 185 (274)
..++.+|| ||||||.++..+++.++.+|+|||+|++|++.|+++. .+++++++|++++ |+.+++||+|++ .+
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 56788999 9999999999996654468999999999999999876 4689999999999 999999999999 55
Q ss_pred cCc----CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH-HhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 186 LPA----MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ-RKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 186 ~l~----~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~-~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
.+. +..+++.++++++|+|||||+|++.+.. .+ ... ...+.. ..... .++....++++||+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~--~~-~~~~~~~~~~--~~~~~-~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT--SW-GELMKSKYSD--ITIMF-EETQVPALLEAGFRR 204 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH--HH-HHHTTTTCSC--HHHHH-HHHTHHHHHHTTCCG
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC--cH-HHhhchhhhh--hhhhc-cHHHHHHHHHCCCCC
Confidence 431 1224457899999999999999986432 11 111 111111 00111 245556889999973
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-19 Score=159.47 Aligned_cols=164 Identities=16% Similarity=0.048 Sum_probs=124.3
Q ss_pred HHHHHHHhCCC--CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 104 RIDQIISAGEI--DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 104 w~~~ll~~~~~--~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
....+++.+.. .++.+|| ||||+|.++..+++..| .+++|+|+| .|++.|+++. .+++++++|+.+.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence 34566766776 7889999 99999999999998876 799999999 9999999873 258999999998877
Q ss_pred CCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCCh-----hHHHHHHhhCc-ccc-cccCCCHHHHHH
Q 023974 174 KWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQGR-----EALQKQRKQFP-DVI-VSDLPDQMTLQK 244 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr-----~~l~~~~~~~~-~~s-i~~fps~~eL~~ 244 (274)
.++ ||+|++...+++..+. .+++++++++|||||+++|.+.... .........+. ... .....+.+++.+
T Consensus 230 ~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 230 GND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 554 9999999898887444 6999999999999999999654321 11121111110 001 345678999999
Q ss_pred HHHhCCCcEeEEEecCCe-EEEEEEe
Q 023974 245 AAGNHCFQIDNFVDESGF-YLVVLKF 269 (274)
Q Consensus 245 ll~~aGF~~v~~~d~~~~-yl~v~~~ 269 (274)
+++++||+++...+.... .+++.++
T Consensus 309 ll~~aGf~~~~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSLPTTQQQVIVAY 334 (335)
T ss_dssp HHHHTTCSEEEEECCTTSSSEEEEEE
T ss_pred HHHHCCCCeeeEEECCCCceeEEEec
Confidence 999999999998875543 3444443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-19 Score=152.55 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=101.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHH---hCCCceEEEeeccCC----CCCCCCccEEE
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKE---KYDTVKCWQGELIYV----PDKWGPLDVVF 182 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~---k~~~v~~~~gDae~L----Pf~~~sFD~V~ 182 (274)
+.+.++++|| ||||||.++..+++..+ ++|+|||+|++|++.+++ +..++.++++|+.+. |+. ++||+|+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~ 131 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIY 131 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEE
Confidence 4678899999 99999999999988764 799999999987654332 246789999999874 554 8999999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHH----HHHHhCCCcEeEEEe
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQ----KAAGNHCFQIDNFVD 258 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~----~ll~~aGF~~v~~~d 258 (274)
++.. ...+.+.++++++|+|||||+|+|.... + . .+.-.+.+++. +.++++ |++.+..+
T Consensus 132 ~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~~~-~----~---------~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 132 QDIA--QKNQIEILKANAEFFLKEKGEVVIMVKA-R----S---------IDSTAEPEEVFKSVLKEMEGD-FKIVKHGS 194 (210)
T ss_dssp ECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEH-H----H---------HCTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred Eecc--ChhHHHHHHHHHHHHhCCCCEEEEEEec-C----C---------ccccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence 9842 2223445699999999999999997321 1 0 01111233432 237888 99888877
Q ss_pred c----CCeEEEEEEe
Q 023974 259 E----SGFYLVVLKF 269 (274)
Q Consensus 259 ~----~~~yl~v~~~ 269 (274)
. +++|++|+++
T Consensus 195 ~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 195 LMPYHRDHIFIHAYR 209 (210)
T ss_dssp CTTTCTTEEEEEEEE
T ss_pred CCCCCCCcEEEEEEc
Confidence 5 3568888876
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=144.51 Aligned_cols=146 Identities=9% Similarity=0.034 Sum_probs=115.1
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CC--ceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DT--VKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~--v~~~~gDae~LPf~ 174 (274)
...+.+++.+...++.+|| +|||+|.++..+++.+ .+|+|+|+|+.|++.|+++. ++ ++++++|+.+ ++.
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~ 116 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc-ccc
Confidence 3667788888888999999 9999999999998874 69999999999999999863 44 8999999988 445
Q ss_pred CCCccEEEecccCcC-CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 175 WGPLDVVFLYFLPAM-PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~-~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
+++||+|+++..+++ ..+..++++++.++|||||++++..+.... .+++.+.+++....+
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------------------~~~~~~~l~~~~~~~ 177 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-------------------AKSLAKYMKDVFGNV 177 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-------------------HHHHHHHHHHHHSCC
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC-------------------hHHHHHHHHHHhcce
Confidence 789999999987776 456789999999999999999998654321 124556666662244
Q ss_pred eEEEecCCeEEEEEEe
Q 023974 254 DNFVDESGFYLVVLKF 269 (274)
Q Consensus 254 v~~~d~~~~yl~v~~~ 269 (274)
..+...+++|+.+.+|
T Consensus 178 ~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 178 ETVTIKGGYRVLKSKK 193 (194)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEecCCcEEEEEEee
Confidence 4455677777777664
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=160.07 Aligned_cols=159 Identities=10% Similarity=-0.004 Sum_probs=119.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCc
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sF 178 (274)
.+++.....+..+|| ||||||.++..+++..| .+++++|+ +.|++.|+++. ++++|+.+|+. -|++. +|
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~ 236 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GA 236 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SC
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CC
Confidence 344455566778999 99999999999999877 79999999 99999999762 46999999996 34443 89
Q ss_pred cEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhHH--HHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 179 DVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREAL--QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 179 D~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l--~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
|+|++..++|++.|. .+++++++|+|||||+|+|.+....... ................+.+|+.++++++||+++
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 999999999988775 7999999999999999999765322110 000000001122346789999999999999999
Q ss_pred EEEecCCeEEEEEE
Q 023974 255 NFVDESGFYLVVLK 268 (274)
Q Consensus 255 ~~~d~~~~yl~v~~ 268 (274)
.......+.++.++
T Consensus 317 ~~~~~~~~~vie~r 330 (332)
T 3i53_A 317 AAHPISYVSIVEMT 330 (332)
T ss_dssp EEEECSSSEEEEEE
T ss_pred EEEECCCcEEEEEe
Confidence 88876664444443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=162.09 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=126.9
Q ss_pred HHHHHhCCCCC-CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC-CCC
Q 023974 106 DQIISAGEIDE-SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP-DKW 175 (274)
Q Consensus 106 ~~ll~~~~~~~-~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP-f~~ 175 (274)
..+++.+.+.+ +.+|| ||||||.++..+++..| .+++++|+ +.|++.|+++. ++++++.+|+.+.+ +..
T Consensus 168 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 246 (352)
T 3mcz_A 168 VDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG 246 (352)
T ss_dssp HHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTT
T ss_pred HHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCC
Confidence 36777777777 88999 99999999999999877 89999999 88999999763 24899999998876 235
Q ss_pred CCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHHhhCc--ccccccCCCHHHHHHHH
Q 023974 176 GPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG-----REALQKQRKQFP--DVIVSDLPDQMTLQKAA 246 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~~~~~--~~si~~fps~~eL~~ll 246 (274)
+.||+|++...+|++.|. .+++++++++|||||+|+|.+... ............ ........+.+++.+++
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 326 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV 326 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence 679999999999988765 799999999999999999965321 111111111111 01123467899999999
Q ss_pred HhCCCcEeEEEecCCeEEEEEEecCC
Q 023974 247 GNHCFQIDNFVDESGFYLVVLKFSKS 272 (274)
Q Consensus 247 ~~aGF~~v~~~d~~~~yl~v~~~~~~ 272 (274)
+++||+++... ...+++++.+|+..
T Consensus 327 ~~aGf~~~~~~-~g~~~l~~a~kp~~ 351 (352)
T 3mcz_A 327 RDAGLAVGERS-IGRYTLLIGQRSSG 351 (352)
T ss_dssp HHTTCEEEEEE-ETTEEEEEEECCCC
T ss_pred HHCCCceeeec-cCceEEEEEecCCC
Confidence 99999988854 56688889898753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-20 Score=160.39 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=106.2
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHH----HH-----hCCCceEEEeeccCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGI----KE-----KYDTVKCWQGELIYVPDK 174 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~A----r~-----k~~~v~~~~gDae~LPf~ 174 (274)
+..++.+.+.++.+|| ||||||.++..|++..| .+|+|||+|++||+.+ ++ ..++++++++|++++|+.
T Consensus 17 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 17 DAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred HHHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence 3445555678889999 99999999999999876 8999999999999963 21 134789999999999998
Q ss_pred CCCccEEEecccC-----cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCC----HHHHHHH
Q 023974 175 WGPLDVVFLYFLP-----AMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPD----QMTLQKA 245 (274)
Q Consensus 175 ~~sFD~V~~~f~l-----~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps----~~eL~~l 245 (274)
+++ |.|++.+.+ +++.|+.+++++++|+|||||++++...... +.. ..........++ .+++.++
T Consensus 97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHA-WRP----SVPEVGEHPEPTPDSADEWLAPR 170 (218)
T ss_dssp CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGG-BTT----BCGGGTTCCCCCHHHHHHHHHHH
T ss_pred CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccc-ccc----cccccccCCccchHHHHHHHHHH
Confidence 888 888754421 2556779999999999999999999532110 000 000000000111 3558889
Q ss_pred HHhCCCcEeEEEe
Q 023974 246 AGNHCFQIDNFVD 258 (274)
Q Consensus 246 l~~aGF~~v~~~d 258 (274)
++++||++.....
T Consensus 171 l~~aGf~i~~~~~ 183 (218)
T 3mq2_A 171 YAEAGWKLADCRY 183 (218)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCCceeeec
Confidence 9999998877654
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-19 Score=161.87 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=123.5
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
.+.+++.+.+.++.+|| ||||+|.++..+++..+ .+++++|+ +.|++.|+++. ++++++++|+.+ +++.
T Consensus 172 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~- 248 (360)
T 1tw3_A 172 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR- 248 (360)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-
T ss_pred HHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-
Confidence 45667777888889999 99999999999999877 79999999 99999999763 268999999876 3332
Q ss_pred CccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCC-Chh----HHHHHHhhCc-ccccccCCCHHHHHHHHHh
Q 023974 177 PLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQ-GRE----ALQKQRKQFP-DVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~-gr~----~l~~~~~~~~-~~si~~fps~~eL~~ll~~ 248 (274)
.||+|++...++++.+. .+++++++++|||||+++|.+.. ... .+......+. ........+.+++.+++++
T Consensus 249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (360)
T 1tw3_A 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS 328 (360)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHH
Confidence 49999999999887766 48999999999999999997654 111 1111111110 0012356789999999999
Q ss_pred CCCcEeEEEecCC------eEEEEEEec
Q 023974 249 HCFQIDNFVDESG------FYLVVLKFS 270 (274)
Q Consensus 249 aGF~~v~~~d~~~------~yl~v~~~~ 270 (274)
+||+++....... ..+++.+++
T Consensus 329 aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 329 AGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp TTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred CCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 9999888777544 456666654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-19 Score=164.46 Aligned_cols=152 Identities=12% Similarity=0.118 Sum_probs=115.1
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCC--CCCCCCccEEEec
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYV--PDKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~L--Pf~~~sFD~V~~~ 184 (274)
....+|| ||||||.++..++++.| .+++++|+ ++|++.|+++.. +++++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 4567999 99999999999999877 79999999 999999998742 589999999885 555 889999999
Q ss_pred ccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCCh---hHH-----HHHHhhC--cccccccCCCHHHHHHHHHhCCCc
Q 023974 185 FLPAMPFPLD--QVFETLANRCSPGARVVISHPQGR---EAL-----QKQRKQF--PDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 185 f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~gr---~~l-----~~~~~~~--~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
..+|++.+.+ +++++++|+|||||+|+|.+.... ... ....... .........+.+|+.++++++||+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 9998776654 789999999999999999654221 110 0011010 011123466899999999999999
Q ss_pred EeEEEecCCeEEEEEE
Q 023974 253 IDNFVDESGFYLVVLK 268 (274)
Q Consensus 253 ~v~~~d~~~~yl~v~~ 268 (274)
++...+..+.+..|+.
T Consensus 336 ~v~~~~~~g~~~svi~ 351 (363)
T 3dp7_A 336 VEEIQDNIGLGHSILQ 351 (363)
T ss_dssp ESCCCCCBTTTBEEEE
T ss_pred EEEEEeCCCCCceEEE
Confidence 9988765555444443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-20 Score=156.59 Aligned_cols=140 Identities=12% Similarity=0.064 Sum_probs=106.3
Q ss_pred CCCCCeEE-EEcCchHHH-HHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 114 IDESSKVL-VSISSEEFV-DRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~-~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
..++.+|| +|||+|.++ ..+.+.+ .+|+|+|+|++|++.|+++. ++++++++|++++|+.+++||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 45678999 999999984 4454434 59999999999999999763 56899999999999989999999999888
Q ss_pred cCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHH-HH---H-HhhCc---c--cccccCCCHHHHHHHHHhCCCcEe
Q 023974 188 AMP--FPLDQVFETLANRCSPGARVVISHPQGREAL-QK---Q-RKQFP---D--VIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 188 ~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l-~~---~-~~~~~---~--~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+++ .++.+++++++|+|||||+++|......... .. . ...|. . .....+.+.+++.++++++||...
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 877 6888999999999999999999643211100 00 0 00010 0 122357789999999999998544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-19 Score=164.49 Aligned_cols=134 Identities=12% Similarity=0.086 Sum_probs=103.3
Q ss_pred ccccccccccccccccc----------CCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEE
Q 023974 77 VVNFEDFTEIDWSFLDS----------DELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVV 144 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~----------~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gV 144 (274)
|....++.+..|..... ...........++.-+..+++.++++|| ||||||.++..++.+.+ ++|+||
T Consensus 73 y~~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gI 152 (298)
T 3fpf_A 73 YVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVV 152 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEE
Confidence 66677777777875331 1112212222334445678999999999 99999988766555433 799999
Q ss_pred eCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 145 HDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 145 D~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+|++|++.|+++ ..+++|++||+.++| +++||+|++... .+++++++++++|+|||||+|++...
T Consensus 153 Dis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 153 EIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9999999999986 357899999999987 689999998754 57899999999999999999999653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=141.09 Aligned_cols=111 Identities=17% Similarity=0.038 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CC-CceEEEeecc-C
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELI-Y 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae-~ 170 (274)
....++..+++.+.+.++.+|| +|||||.++..+++..+ .+|+|+|+|++|++.|+++ .+ ++ ++++|+. .
T Consensus 9 t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 9 TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred cHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence 3445778888888999999999 99999999999988765 7999999999999999986 23 56 8889984 4
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+|..+++||+|++.+.+++ .++++++.++|||||++++...
T Consensus 88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEee
Confidence 5554489999999988876 6899999999999999999754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=156.39 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=121.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
....+++...+.+ .+|| ||||||.++..+++..| .+++++|+ +.|++.|+++. ++++++++|+.+ |++
T Consensus 156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 3456677777777 8999 99999999999998876 79999999 99999999874 468999999987 654
Q ss_pred CCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC----hhHHHHHHhhC-cccccccCCCHHHHHHHHHh
Q 023974 176 GPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG----REALQKQRKQF-PDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g----r~~l~~~~~~~-~~~si~~fps~~eL~~ll~~ 248 (274)
++||+|++...+|++.+.+ +++++++++|||||+++|.+... ........... .........+.+++.+++++
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence 7899999999998776666 99999999999999999975321 11111111110 00011345689999999999
Q ss_pred CCCcEeEEEecCC-eEEEEEE
Q 023974 249 HCFQIDNFVDESG-FYLVVLK 268 (274)
Q Consensus 249 aGF~~v~~~d~~~-~yl~v~~ 268 (274)
+||+++....... ..+++.+
T Consensus 312 aGf~~~~~~~~~~~~~~i~~~ 332 (334)
T 2ip2_A 312 GGFAVERIVDLPMETRMIVAA 332 (334)
T ss_dssp TTEEEEEEEEETTTEEEEEEE
T ss_pred CCCceeEEEECCCCCEEEEEE
Confidence 9999888776543 4444444
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=160.07 Aligned_cols=162 Identities=9% Similarity=0.059 Sum_probs=122.3
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
...+++.....++.+|| ||||||.++..+++..| .+++++|+ +.|++.|+++. ++++|+++|+. .|++.
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~- 267 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD- 267 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence 45677777888889999 99999999999999877 79999999 99999999863 46999999997 45554
Q ss_pred CccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC---hhHHHHHHhhC-cccccccCCCHHHHHHHHHhCC
Q 023974 177 PLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG---REALQKQRKQF-PDVIVSDLPDQMTLQKAAGNHC 250 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g---r~~l~~~~~~~-~~~si~~fps~~eL~~ll~~aG 250 (274)
.||+|++...++++.|.+ +++++++++|||||+|+|.+... ........... .........+.+++.++++++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence 899999999999887776 79999999999999999964321 11111111100 0112234678999999999999
Q ss_pred CcEeEEEecCCeEEEEEEe
Q 023974 251 FQIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 251 F~~v~~~d~~~~yl~v~~~ 269 (274)
|+++........+..|+..
T Consensus 348 f~~~~~~~~~~~~~svie~ 366 (369)
T 3gwz_A 348 LRVERSLPCGAGPVRIVEI 366 (369)
T ss_dssp EEEEEEEECSSSSEEEEEE
T ss_pred CeEEEEEECCCCCcEEEEE
Confidence 9999988722223344443
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-19 Score=163.84 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=118.9
Q ss_pred HHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 106 DQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 106 ~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
..+++... +.++.+|| ||||||.++..++++.+ .+++++|+ +.|++.|++ .++++++++|+.+ |+++ ||+|+
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~~--~D~v~ 272 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP-LSGIEHVGGDMFA-SVPQ--GDAMI 272 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-CTTEEEEECCTTT-CCCC--EEEEE
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh-cCCCEEEeCCccc-CCCC--CCEEE
Confidence 45666664 77788999 99999999999999887 78999999 999999876 5789999999987 6654 99999
Q ss_pred ecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcC---CCh--hH---HHHHHhhCcc-cccccCCCHHHHHHHHHhCCC
Q 023974 183 LYFLPAMPFPLD--QVFETLANRCSPGARVVISHP---QGR--EA---LQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 183 ~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~---~gr--~~---l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF 251 (274)
+...+|++.|++ +++++++|+|||||+|+|.+. ... .. .........- .......+.+++.++++++||
T Consensus 273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 352 (372)
T 1fp1_D 273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGF 352 (372)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTC
T ss_pred EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCC
Confidence 999999988888 999999999999999999642 111 01 1111111000 011345689999999999999
Q ss_pred cEeEEEe-cCC-eEEEE
Q 023974 252 QIDNFVD-ESG-FYLVV 266 (274)
Q Consensus 252 ~~v~~~d-~~~-~yl~v 266 (274)
+++.... ..+ +.++.
T Consensus 353 ~~~~~~~~~~~~~~vie 369 (372)
T 1fp1_D 353 SKFQVACRAFNSLGVME 369 (372)
T ss_dssp SEEEEEEEETTTEEEEE
T ss_pred ceEEEEEcCCCCeEEEE
Confidence 9888877 444 43333
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-19 Score=158.87 Aligned_cols=135 Identities=9% Similarity=0.008 Sum_probs=106.6
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
..++.+|| +|||+|.++..+++.+. +|+|+|+|+.|++.|+++.. +++++++|++++++ +++||+|+++.+++
T Consensus 118 ~~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 118 IISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp HSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGG
T ss_pred ccCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchh
Confidence 34788999 99999999999988864 99999999999999998743 78999999999988 89999999999888
Q ss_pred CCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc-cccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 189 MPFP--LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD-VIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 189 ~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~-~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
++.+ ...+++++.|+|||||+++|....... .+.. .......+.+++.++++. |+++.+.+.
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 260 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD-------DVPCPLPFSFTFAENELKEYYKD--WEFLEYNEN 260 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS-------SSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC-------CCCCCCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence 7744 459999999999999998875332211 0110 011335567899988864 988887644
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=155.02 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=114.5
Q ss_pred ccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHH--
Q 023974 78 VNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLA-- 152 (274)
Q Consensus 78 ~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~-- 152 (274)
..+++...+.|+..-.... .++-..++.+.+.+|++|| +|||||.++..+++. ++ ++|+|+|+|+.|++
T Consensus 44 ~~~~~~~yr~w~~~~skla------~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l 117 (232)
T 3id6_C 44 IKYEGVEYREWNAFRSKLA------GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVREL 117 (232)
T ss_dssp EEETTEEEEECCTTTCHHH------HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHH
T ss_pred eeecCcchhhhchHHHHHH------HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH
Confidence 4444445666765322111 1222223334589999999 999999999999876 55 89999999999864
Q ss_pred --HHHHhCCCceEEEeeccCCCC---CCCCccEEEecccCcCCCCHHHHHH-HHHHhcCCCCEEEEEcCCChhHHHHHHh
Q 023974 153 --GIKEKYDTVKCWQGELIYVPD---KWGPLDVVFLYFLPAMPFPLDQVFE-TLANRCSPGARVVISHPQGREALQKQRK 226 (274)
Q Consensus 153 --~Ar~k~~~v~~~~gDae~LPf---~~~sFD~V~~~f~l~~~~d~~~al~-el~RvLKPGGrlvIs~~~gr~~l~~~~~ 226 (274)
.|++ .+++.++++|+...+. ..++||+|++.... ++..+++. .+.++|||||+|+++-.. +. ++. .
T Consensus 118 ~~~a~~-r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~-~~-~d~--t 189 (232)
T 3id6_C 118 LLVAQR-RPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKA-RS-IDV--T 189 (232)
T ss_dssp HHHHHH-CTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-----------
T ss_pred HHHhhh-cCCeEEEEcccccchhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEcc-CC-ccc--C
Confidence 3443 4789999999987532 24799999998654 45566655 455599999999997211 10 000 0
Q ss_pred hCcccccccCCCHHHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023974 227 QFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 227 ~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
..+ .. ..++..+.++++||++....+ +.++|++|++++
T Consensus 190 ~~~----~e--~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 190 KDP----KE--IYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp CCS----SS--STTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred CCH----HH--HHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEeC
Confidence 001 11 113455677889999988777 456799998875
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-19 Score=159.20 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC-----CCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD-----KWG 176 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf-----~~~ 176 (274)
.|++.+++.+.+.++.+|| ||||||.++..|++++ .+|+|||+|++||+.|+++.... ++++|+++++. .++
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~~~~ 109 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKELAG 109 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGGGTT
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccccCC
Confidence 4888999999999999999 9999999999999887 49999999999999999997654 56777777655 257
Q ss_pred CccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 177 PLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||+|+++.+++++. +...+++++.++| |||+++++..
T Consensus 110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 999999998888753 5567999999999 9999999754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=147.14 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC--CCCCCccEEEecc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP--DKWGPLDVVFLYF 185 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP--f~~~sFD~V~~~f 185 (274)
.++.+|| ||||||.++..+++..| .+|+|||+|+.|++.|+++. ++++++++|+.+++ +.+++||+|++++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3577999 99999999999999876 79999999999999999863 67999999999988 7789999999997
Q ss_pred cCcCCC--------CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMPF--------PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~--------d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
...|.. ...++++++.++|||||++++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 654432 125899999999999999999743
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-19 Score=160.41 Aligned_cols=144 Identities=9% Similarity=0.061 Sum_probs=98.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCc-HHHHHHH---HHh-----CCCceEEEeeccCCCCC-CCCccEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDS-LFVLAGI---KEK-----YDTVKCWQGELIYVPDK-WGPLDVV 181 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S-~~ML~~A---r~k-----~~~v~~~~gDae~LPf~-~~sFD~V 181 (274)
..++.+|| ||||||.++..|+++.+ .+|+|||+| +.||++| +++ .+++.|+++|++++|.. .+.+|.|
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 35778999 99999999999987665 789999999 8898887 543 45789999999999853 3667777
Q ss_pred EecccCc-----CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH---hhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 182 FLYFLPA-----MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQR---KQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 182 ~~~f~l~-----~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~---~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
.+++.+. ...+..+++++++|+|||||+++|....+.. ..... ...+......+. .+++.++++++||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~el~~~l~~aGf~v 179 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIKKRGLPLLSKAYFL-SEQYKAELSNSGFRI 179 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC---------------CCHHHHH-SHHHHHHHHHHTCEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhchhhhcCCCCCChhhcc-hHHHHHHHHHcCCCe
Confidence 7665322 1224467899999999999999994333332 11110 011110111111 235999999999988
Q ss_pred eEEEec
Q 023974 254 DNFVDE 259 (274)
Q Consensus 254 v~~~d~ 259 (274)
......
T Consensus 180 ~~~~~~ 185 (225)
T 3p2e_A 180 DDVKEL 185 (225)
T ss_dssp EEEEEE
T ss_pred eeeeec
Confidence 776543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-18 Score=144.88 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=104.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~ 176 (274)
....+++.+.+.++.+|| ||||||.++..+++.+ .+|+|||+|++|++.|+++. + +++++++|+++.....+
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 445667778889999999 9999999999998874 69999999999999999873 4 79999999998443457
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+||+|++..+. +++ +++++.|+|||||++++.... .. +.+++.+.+++.||++...
T Consensus 122 ~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~-~~------------------~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 122 LPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT-LE------------------SETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS-HH------------------HHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC-cc------------------cHHHHHHHHHhCCCcEEEE
Confidence 89999987644 667 999999999999999997542 11 1356677888888876664
Q ss_pred E
Q 023974 257 V 257 (274)
Q Consensus 257 ~ 257 (274)
.
T Consensus 178 ~ 178 (204)
T 3njr_A 178 D 178 (204)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=159.21 Aligned_cols=160 Identities=10% Similarity=0.038 Sum_probs=119.5
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
...+++... +.++.+|| ||||||.++..++++.| .+++++|+ +.|++.|+++ ++++|+++|+.+ |++++ |+|
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v 265 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAI 265 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEE
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEE
Confidence 345666655 77788999 99999999999999887 79999999 9999988754 789999999987 66654 999
Q ss_pred EecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCCh-----hHHHHH---HhhCcc--cccccCCCHHHHHHHHHhC
Q 023974 182 FLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQGR-----EALQKQ---RKQFPD--VIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 182 ~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~gr-----~~l~~~---~~~~~~--~si~~fps~~eL~~ll~~a 249 (274)
++...+|++.+.+ ++|++++|+|||||+|+|.+.... ...... ...... .......+.+|+.++++++
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A 345 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS 345 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC
Confidence 9999998776654 789999999999999999653211 111111 000000 0123467899999999999
Q ss_pred CCcEeEEEec-CCeEEEEEEe
Q 023974 250 CFQIDNFVDE-SGFYLVVLKF 269 (274)
Q Consensus 250 GF~~v~~~d~-~~~yl~v~~~ 269 (274)
||+++..... ...+++.+.|
T Consensus 346 GF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 346 GFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp TCCEEEEEEEETTEEEEEEEC
T ss_pred CCeeeEEEEeCCCcEEEEEEe
Confidence 9999887774 4455554443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=146.92 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=107.3
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
...+++.+.+.++.+|| +|||+|.++..+++. ++ .+|+|+|+|++|++.|+++. +++++.++|+.+.|+.+
T Consensus 85 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 85 ASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35677778899999999 999999999999987 65 79999999999999999863 57899999999998888
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
++||+|++. .+++.++++++.++|||||++++..+... + .+++.+.++++||..+.
T Consensus 165 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----~---------------~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 165 AAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNIT----Q---------------VLELVRAAEAHPFRLER 220 (258)
T ss_dssp TCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCHH----H---------------HHHHHHHHTTTTEEEEE
T ss_pred CCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCHH----H---------------HHHHHHHHHHCCCceEE
Confidence 999999983 45788999999999999999999765321 1 24666777888987654
Q ss_pred EE
Q 023974 256 FV 257 (274)
Q Consensus 256 ~~ 257 (274)
..
T Consensus 221 ~~ 222 (258)
T 2pwy_A 221 VL 222 (258)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-18 Score=147.88 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEeccc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLYFL 186 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~f~ 186 (274)
++.+|| ||||||.++..+++..| ..|+|||+|++|++.|+++ .++++++++|+.+++ +.+++||.|++++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 567999 99999999999998876 7999999999999999976 457999999999987 77899999998875
Q ss_pred CcCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 187 PAMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 187 l~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
..|..+ ..++++++.|+|||||+|+|...
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 444322 36889999999999999999743
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-18 Score=141.58 Aligned_cols=117 Identities=9% Similarity=0.014 Sum_probs=98.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.++.+|| +|||||.++..+++.+ +|+|+|+|++|++. .++++++++|+.+ |+.+++||+|+++..+++..+.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence 4567999 9999999999998877 99999999999988 6679999999988 7777999999999777765544
Q ss_pred ---------HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 194 ---------DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 194 ---------~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
.++++++.+.| |||++++..... ...+++.++++++||+.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-------------------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-------------------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-------------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-------------------CCHHHHHHHHHHCCCcEEEEEe
Confidence 68899999999 999999964311 2457899999999998776655
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=145.17 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=87.2
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC-CCCCCccE
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP-DKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP-f~~~sFD~ 180 (274)
...+.++.+|| +|||||.++..+++. ++ ++|+|+|+|++|++.|+++. ++++++++|+++++ +.+++||+
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 34677889999 999999999999887 34 79999999999999999872 56899999999987 66799999
Q ss_pred EEecccCc---------CCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VFLYFLPA---------MPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~f~l~---------~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+++..+. ...+..++++++.|+|||||++++..
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 99886441 11144689999999999999999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=135.70 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=104.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~s 177 (274)
....+++.+.+.++.+|| +|||+|.++..+++. ..+|+|+|+|+.|++.|+++. ++++++++|+.+ ++.+++
T Consensus 23 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~ 100 (183)
T 2yxd_A 23 IRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLE 100 (183)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCC
Confidence 455667777888899999 999999999999873 279999999999999999874 578999999988 777789
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
||+|+++.. .++.++++++.++ |||++++..+. ... ..++.+.++++||++...
T Consensus 101 ~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~-~~~------------------~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 101 FNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV-LEN------------------AAKIINEFESRGYNVDAV 154 (183)
T ss_dssp CSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC-HHH------------------HHHHHHHHHHTTCEEEEE
T ss_pred CcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc-ccc------------------HHHHHHHHHHcCCeEEEE
Confidence 999999866 6889999999999 99999998643 111 356788899999866544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=143.69 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=106.2
Q ss_pred hCCCCCCCeEE-EEcC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---C-CceEEEeeccCC-CCCCCCccEEEe
Q 023974 111 AGEIDESSKVL-VSIS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---D-TVKCWQGELIYV-PDKWGPLDVVFL 183 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~-~v~~~~gDae~L-Pf~~~sFD~V~~ 183 (274)
...+.++.+|| +||| ||.++..+++....+|+|+|+|++|++.|+++. . +++++++|+..+ ++.+++||+|++
T Consensus 50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEE
Confidence 34567889999 9999 999999998873369999999999999999763 2 689999997544 455799999999
Q ss_pred cccCcCCCC-------------------HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHH
Q 023974 184 YFLPAMPFP-------------------LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQK 244 (274)
Q Consensus 184 ~f~l~~~~d-------------------~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ 244 (274)
+..+.+..+ ..++++++.++|||||++++..+.+.. ..+++.+
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------------~~~~~~~ 191 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK------------------LLNVIKE 191 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH------------------HHHHHHH
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh------------------HHHHHHH
Confidence 844433222 478999999999999999996443221 1367888
Q ss_pred HHHhCCCcEeEEEecCC---eEEEEEEec
Q 023974 245 AAGNHCFQIDNFVDESG---FYLVVLKFS 270 (274)
Q Consensus 245 ll~~aGF~~v~~~d~~~---~yl~v~~~~ 270 (274)
++++.||++....-..+ .++++.+|.
T Consensus 192 ~l~~~g~~~~~~~~~~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 192 RGIKLGYSVKDIKFKVGTRWRHSLIFFKG 220 (230)
T ss_dssp HHHHTTCEEEEEEECCCC-CEEEEEEECC
T ss_pred HHHHcCCceEEEEecCCCeEEEEEEEecc
Confidence 99999997766554333 345555544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-18 Score=139.38 Aligned_cols=145 Identities=10% Similarity=0.121 Sum_probs=110.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC-
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW- 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~- 175 (274)
....+++.+.+.++.+|| +|||+|.++..+++.+ .+|+|+|+|+.|++.|+++. +++.+.++|+.+ ++.+
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~ 98 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKI 98 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccC
Confidence 455666667888999999 9999999999998877 69999999999999999853 578999999987 3233
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
++||+|++...++ +..++++++.++|||||++++..+. .. +.+++.+.+++.||++..
T Consensus 99 ~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~-~~------------------~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 99 PDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL-LE------------------TKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp CCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB-HH------------------HHHHHHHHHHHTTCCCEE
T ss_pred CCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecC-cc------------------hHHHHHHHHHHCCCceEE
Confidence 6899999886553 5689999999999999999997542 11 135777888999984332
Q ss_pred EE----------------ecCCeEEEEEEecCC
Q 023974 256 FV----------------DESGFYLVVLKFSKS 272 (274)
Q Consensus 256 ~~----------------d~~~~yl~v~~~~~~ 272 (274)
.. .....|+++++|+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~k~~~ 189 (192)
T 1l3i_A 157 TELNIARGRALDRGTMMVSRNPVALIYTGVSHE 189 (192)
T ss_dssp EEEEEEEEEEETTEEEEEECCCEEEEECCC---
T ss_pred EEEEcccCeEecCceeecCCCCEEEEEEecccc
Confidence 21 244557888887643
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=147.39 Aligned_cols=149 Identities=11% Similarity=-0.037 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf 173 (274)
...++..+++.+.. .++.+|| +|||||.++..+++..+ .+|+|+|+|+.|++.|+++.. +++++++|+.+ ++
T Consensus 14 ~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~ 92 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WL 92 (215)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HH
T ss_pred HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hh
Confidence 34466777777655 7888999 99999999999999876 699999999999999998865 57889999988 66
Q ss_pred CC-----CCccEEEecccCcCCCCH--------------------------HHHHHHHHHhcCCCCE-EEEEcCCChhHH
Q 023974 174 KW-----GPLDVVFLYFLPAMPFPL--------------------------DQVFETLANRCSPGAR-VVISHPQGREAL 221 (274)
Q Consensus 174 ~~-----~sFD~V~~~f~l~~~~d~--------------------------~~al~el~RvLKPGGr-lvIs~~~gr~~l 221 (274)
.+ ++||+|+++..+....+. .++++++.++|||||+ +++..+.
T Consensus 93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----- 167 (215)
T 4dzr_A 93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----- 167 (215)
T ss_dssp HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----
T ss_pred hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----
Confidence 65 999999997333222111 7888999999999999 6655332
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHH--hCCCcEeEEEe-cCC-eEEEEEEec
Q 023974 222 QKQRKQFPDVIVSDLPDQMTLQKAAG--NHCFQIDNFVD-ESG-FYLVVLKFS 270 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~--~aGF~~v~~~d-~~~-~yl~v~~~~ 270 (274)
...+++.++++ +.||..+.... ..+ ..+++.++.
T Consensus 168 ---------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 ---------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ---------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ---------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12467888888 89996665444 332 345555544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=153.20 Aligned_cols=174 Identities=12% Similarity=-0.020 Sum_probs=122.7
Q ss_pred ccccccccccccccccccCCccchhHHHHHHHHHHhCC------CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCc
Q 023974 76 SVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGE------IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDS 147 (274)
Q Consensus 76 ~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~------~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S 147 (274)
-...|.+.+.+ |.........-.....|.+.+++.+. ..++.+|| ||||||.++..|+...+ .+|+|||+|
T Consensus 35 ~~~~~~~~l~~-~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s 113 (249)
T 3g89_A 35 AFSRLYALLQE-ASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDAT 113 (249)
T ss_dssp HHHHHHHHHHH-C----------CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHHH-HhcCCCCceECCHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC
Confidence 35667777777 76544432222244456666655432 35678999 99999999999988766 899999999
Q ss_pred HHHHHHHHHh-----CCCceEEEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh
Q 023974 148 LFVLAGIKEK-----YDTVKCWQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 148 ~~ML~~Ar~k-----~~~v~~~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
++|++.|+++ ..+++++++|+++++.. +++||+|++.. +.+...+++++.++|||||++++.....
T Consensus 114 ~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~-- 187 (249)
T 3g89_A 114 RKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA----VAPLCVLSELLLPFLEVGGAAVAMKGPR-- 187 (249)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES----SCCHHHHHHHHGGGEEEEEEEEEEECSC--
T ss_pred HHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC----cCCHHHHHHHHHHHcCCCeEEEEEeCCC--
Confidence 9999999975 34699999999998864 48999999864 3578899999999999999999864321
Q ss_pred HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe------cCCeEEEEEEecC
Q 023974 220 ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD------ESGFYLVVLKFSK 271 (274)
Q Consensus 220 ~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d------~~~~yl~v~~~~~ 271 (274)
...+ .+++.+.++..||++....+ +...++++++|.+
T Consensus 188 ~~~e---------------~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~ 230 (249)
T 3g89_A 188 VEEE---------------LAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTA 230 (249)
T ss_dssp CHHH---------------HTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred cHHH---------------HHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCC
Confidence 1111 13566677888998776553 3456777777743
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=148.08 Aligned_cols=150 Identities=15% Similarity=0.037 Sum_probs=106.3
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccC---CCCCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIY---VPDKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~---LPf~~~sFD 179 (274)
++.+.+.++.+|| +|||||.++..|++. ++ ++|+|||+|++|++.+.+. .++++++++|+++ +|+.+++||
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEE
Confidence 4456788899999 999999999999887 45 7999999998866554432 3789999999988 566788999
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
+|++... .......++.++.|+|||||+++|+... . .. .... ...... ..+ .++++++||+++...+.
T Consensus 150 ~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~--~---~~--~~~~-~~~~~~-~~~-~~~l~~~Gf~~~~~~~~ 217 (233)
T 2ipx_A 150 VIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA--N---CI--DSTA-SAEAVF-ASE-VKKMQQENMKPQEQLTL 217 (233)
T ss_dssp EEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH--H---HH--CSSS-CHHHHH-HHH-HHTTGGGTEEEEEEEEC
T ss_pred EEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc--c---cc--ccCC-CHHHHH-HHH-HHHHHHCCCceEEEEec
Confidence 9998654 2222245588999999999999996321 1 00 0000 000000 123 47889999998886664
Q ss_pred CC----eEEEEEEec
Q 023974 260 SG----FYLVVLKFS 270 (274)
Q Consensus 260 ~~----~yl~v~~~~ 270 (274)
+. +|+++.+++
T Consensus 218 ~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 218 EPYERDHAVVVGVYR 232 (233)
T ss_dssp TTTSSSEEEEEEEEC
T ss_pred CCccCCcEEEEEEeC
Confidence 43 688888774
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=156.22 Aligned_cols=153 Identities=8% Similarity=-0.008 Sum_probs=116.6
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
...+++.+. +.+..+|| ||||||.++..++++.| .+++++|+ ++|++.|++ .++++|+.+|+.+ |++.+ |+|
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~-~~p~~--D~v 263 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-FPGVTHVGGDMFK-EVPSG--DTI 263 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-CTTEEEEECCTTT-CCCCC--SEE
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-cCCeEEEeCCcCC-CCCCC--CEE
Confidence 345666665 77889999 99999999999999887 79999999 999998875 4789999999988 77654 999
Q ss_pred EecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHH---Hhh-Cc-ccccccCCCHHHHHHHHHhC
Q 023974 182 FLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG-----REALQKQ---RKQ-FP-DVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 182 ~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~---~~~-~~-~~si~~fps~~eL~~ll~~a 249 (274)
++...+|++.|. .++|++++|+|||||+|+|.+... ....... ... .. ........+.+|+.++++++
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA 343 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence 999999877554 488999999999999999965321 1111111 000 00 01123467899999999999
Q ss_pred CCcEeEEEecCCe
Q 023974 250 CFQIDNFVDESGF 262 (274)
Q Consensus 250 GF~~v~~~d~~~~ 262 (274)
||+.+........
T Consensus 344 GF~~v~~~~~~~~ 356 (364)
T 3p9c_A 344 GFTGVKSTYIYAN 356 (364)
T ss_dssp TCCEEEEEEEETT
T ss_pred CCceEEEEEcCCc
Confidence 9999988775443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-18 Score=151.69 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=86.1
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.++.+|| ||||+|.++..+++..+ .+|+|+|+|++|++.|+++.+++.+.++|++++|+.+++||+|++.+..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 5778999 99999999999988744 6999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 193 LDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+++++.|+|||||++++..+..
T Consensus 159 --~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 --CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp --CCHHHHHHHEEEEEEEEEEEECT
T ss_pred --hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35899999999999999976653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=157.77 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=113.7
Q ss_pred HHhC--CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec
Q 023974 109 ISAG--EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 109 l~~~--~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
++.. .+.++.+|| ||||||.++..++++.| .+++++|+ +.|++.|++ .++++++++|+.+ |++ .||+|++.
T Consensus 179 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~p--~~D~v~~~ 253 (352)
T 1fp2_A 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLK 253 (352)
T ss_dssp HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc-CCCcEEEeccccC-CCC--CccEEEee
Confidence 4444 456778999 99999999999998876 79999999 999999876 4679999999966 554 39999999
Q ss_pred ccCcCCCCHH--HHHHHHHHhcCC---CCEEEEEcCCC---hh-----HHHHHHhhCcccccccCCCHHHHHHHHHhCCC
Q 023974 185 FLPAMPFPLD--QVFETLANRCSP---GARVVISHPQG---RE-----ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 185 f~l~~~~d~~--~al~el~RvLKP---GGrlvIs~~~g---r~-----~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF 251 (274)
..+|++.|.+ +++++++|+||| ||+|+|.+... .. ..................+.+++.++++++||
T Consensus 254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf 333 (352)
T 1fp2_A 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF 333 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence 9999888888 999999999999 99999965321 10 11111111000011345689999999999999
Q ss_pred cEeEEEecCCe
Q 023974 252 QIDNFVDESGF 262 (274)
Q Consensus 252 ~~v~~~d~~~~ 262 (274)
+++......+.
T Consensus 334 ~~~~~~~~~~~ 344 (352)
T 1fp2_A 334 QHYKISPLTGF 344 (352)
T ss_dssp CEEEEEEEETT
T ss_pred CeeEEEecCCC
Confidence 98887775443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=167.73 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=101.2
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--------------CCC
Q 023974 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--------------YDT 160 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--------------~~~ 160 (274)
.|......+..+++.+++.++++|| ||||||.++..++...+ .+|+|||+|++|++.|++. .++
T Consensus 154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r 233 (438)
T 3uwp_A 154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 233 (438)
T ss_dssp GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4666667888999999999999999 99999999999887655 4699999999999999863 257
Q ss_pred ceEEEeeccCCCCCC--CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 161 VKCWQGELIYVPDKW--GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 161 v~~~~gDae~LPf~~--~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++|++||+.++|+.+ ..||+|+++..+ +.+++.++|+|++|+|||||+||+++.
T Consensus 234 Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 234 YTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp EEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred eEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeec
Confidence 999999999999865 589999998554 346899999999999999999999643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=156.40 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=115.5
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCc
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sF 178 (274)
...+++...+.++.+|| ||||||.++..++++.| .+++++|++ .|++.++.+ .++++++++|+. .|.+ +|
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~ 248 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDFL-REVP--HA 248 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CC
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCCC-CCCC--CC
Confidence 34677778888899999 99999999999999877 789999995 555522111 235899999995 2333 89
Q ss_pred cEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCC----hhHHHHHHhh-CcccccccCCCHHHHHHHHHhCCC
Q 023974 179 DVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQG----REALQKQRKQ-FPDVIVSDLPDQMTLQKAAGNHCF 251 (274)
Q Consensus 179 D~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~g----r~~l~~~~~~-~~~~si~~fps~~eL~~ll~~aGF 251 (274)
|+|++...+|++.|. .+++++++|+|||||+|+|.+... .......... ..........+.+|+.++++++||
T Consensus 249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf 328 (348)
T 3lst_A 249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGL 328 (348)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTE
T ss_pred cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCC
Confidence 999999999988887 599999999999999999965321 1111111110 011122346789999999999999
Q ss_pred cEeEEEecCCeEEEEEEe
Q 023974 252 QIDNFVDESGFYLVVLKF 269 (274)
Q Consensus 252 ~~v~~~d~~~~yl~v~~~ 269 (274)
+++....... +..|+..
T Consensus 329 ~~~~~~~~~~-~~~vie~ 345 (348)
T 3lst_A 329 RLDRVVGTSS-VMSIAVG 345 (348)
T ss_dssp EEEEEEECSS-SCEEEEE
T ss_pred ceEEEEECCC-CcEEEEE
Confidence 9998887433 3444443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=151.53 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=101.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
..+++.+.+.++.+|| +|||+|.++..+++. ++ .+|+|+|+|++|++.|+++. +++++.++|+.+ ++.++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCC
Confidence 3566677889999999 999999999999887 55 79999999999999999763 468999999988 66778
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+||+|++ +++++.++++++.++|||||++++..+... ..+++.+.++++||..+..
T Consensus 179 ~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-------------------~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 179 MYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD-------------------QSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp CEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH-------------------HHHHHHHHSGGGTEEEEEE
T ss_pred CccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH-------------------HHHHHHHHHHHCCCeEEEE
Confidence 9999998 456888999999999999999999865311 1245666777888876665
Q ss_pred Ee
Q 023974 257 VD 258 (274)
Q Consensus 257 ~d 258 (274)
.+
T Consensus 235 ~~ 236 (275)
T 1yb2_A 235 VE 236 (275)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=152.67 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=113.4
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEE-EeeccCCCC---CCCC
Q 023974 104 RIDQIISAGEID-ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELIYVPD---KWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae~LPf---~~~s 177 (274)
++..+++..++. ++.+|| ||||||.++..|++.+..+|+|||+|++||+.+.++.+.+... ..++..++. +..+
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 677888888775 567999 9999999999998876579999999999999987776665443 345555542 2356
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE-cCC---ChhHHHHHHhhC-cccccccCCCHHHHHHHHHhCCCc
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS-HPQ---GREALQKQRKQF-PDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs-~~~---gr~~l~~~~~~~-~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
||+|++...+++ +..+|.+++|+|||||++++. +|+ ++..... ... .+ ........+++.++++++||.
T Consensus 152 fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~--~G~vrd-~~~~~~~~~~v~~~~~~~Gf~ 225 (291)
T 3hp7_A 152 PSFASIDVSFIS---LNLILPALAKILVDGGQVVALVKPQFEAGREQIGK--NGIVRE-SSIHEKVLETVTAFAVDYGFS 225 (291)
T ss_dssp CSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC---CCCCCC-HHHHHHHHHHHHHHHHHTTEE
T ss_pred CCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCC--CCccCC-HHHHHHHHHHHHHHHHHCCCE
Confidence 999999877764 489999999999999999985 332 1211000 000 00 001122468899999999999
Q ss_pred EeEEEec-------CCeEEEEEEec
Q 023974 253 IDNFVDE-------SGFYLVVLKFS 270 (274)
Q Consensus 253 ~v~~~d~-------~~~yl~v~~~~ 270 (274)
+..+..- +.-|++-+++.
T Consensus 226 v~~~~~spi~g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 226 VKGLDFSPIQGGHGNIEFLAHLEKT 250 (291)
T ss_dssp EEEEEECSSCCGGGCCCEEEEEEEC
T ss_pred EEEEEECCCCCCCcCHHHHHHhhhc
Confidence 8877652 33366666663
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=170.21 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----------CCCceEEE
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----------YDTVKCWQ 165 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----------~~~v~~~~ 165 (274)
...++++.+++.+...++.+|| ||||||.++..|++.+ + .+|+|||+|++|++.|+++ .++++|++
T Consensus 705 L~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq 784 (950)
T 3htx_A 705 LSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784 (950)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred HHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence 4556777777777667889999 9999999999999887 4 6999999999999999882 45789999
Q ss_pred eeccCCCCCCCCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC--------c------
Q 023974 166 GELIYVPDKWGPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQGREALQKQRKQF--------P------ 229 (274)
Q Consensus 166 gDae~LPf~~~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~--------~------ 229 (274)
||++++|+.+++||+|++..+++++.++. .++++++|+|||| .++|+.+.... +.....+ +
T Consensus 785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey--N~lF~~Lnp~tr~~dPd~~~~~ 861 (950)
T 3htx_A 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF--NTILQRSTPETQEENNSEPQLP 861 (950)
T ss_dssp SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG--HHHHTCC------------CCS
T ss_pred CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh--hhhhhhcccccccccccccccc
Confidence 99999999999999999999999988766 5899999999999 88887664221 2221111 0
Q ss_pred --cccccc-CCCHHHHHH----HHHhCCCcEeEEEecCC-e-------EEEEEEec
Q 023974 230 --DVIVSD-LPDQMTLQK----AAGNHCFQIDNFVDESG-F-------YLVVLKFS 270 (274)
Q Consensus 230 --~~si~~-fps~~eL~~----ll~~aGF~~v~~~d~~~-~-------yl~v~~~~ 270 (274)
...... .-+.++++. ++++.||.+...--.+. . -++|+++.
T Consensus 862 ~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR~ 917 (950)
T 3htx_A 862 KFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRRE 917 (950)
T ss_dssp SCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEES
T ss_pred cccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEEC
Confidence 001111 245778777 77888997644433322 1 57777774
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-18 Score=155.16 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred HHHHHHHhCCCC-CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCce--------EEE-eeccCCC
Q 023974 104 RIDQIISAGEID-ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVK--------CWQ-GELIYVP 172 (274)
Q Consensus 104 w~~~ll~~~~~~-~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~--------~~~-gDae~LP 172 (274)
++.++++.+.+. ++.+|| ||||||.++..|++.+..+|+|||+|++||+.|+++.+.+. ++. +|+...+
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 566778877765 456999 99999999999988864699999999999999998776532 222 2222211
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc--cc---ccccCCCHHHHHHHHH
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP--DV---IVSDLPDQMTLQKAAG 247 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~--~~---si~~fps~~eL~~ll~ 247 (274)
+...+||+|+++ ...++++++|+|||||++++.. ...+ ........ .+ ......+.+++.++++
T Consensus 104 ~d~~~~D~v~~~--------l~~~l~~i~rvLkpgG~lv~~~--~p~~-e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~ 172 (232)
T 3opn_A 104 PSFTSIDVSFIS--------LDLILPPLYEILEKNGEVAALI--KPQF-EAGREQVGKNGIIRDPKVHQMTIEKVLKTAT 172 (232)
T ss_dssp CSEEEECCSSSC--------GGGTHHHHHHHSCTTCEEEEEE--CHHH-HSCHHHHC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEhhh--------HHHHHHHHHHhccCCCEEEEEE--Cccc-ccCHHHhCcCCeecCcchhHHHHHHHHHHHH
Confidence 233445544433 2789999999999999999852 1111 11111100 00 0011236789999999
Q ss_pred hCCCcEeEEEecC-------CeEEEEEEecC
Q 023974 248 NHCFQIDNFVDES-------GFYLVVLKFSK 271 (274)
Q Consensus 248 ~aGF~~v~~~d~~-------~~yl~v~~~~~ 271 (274)
++||++......+ -.|++-++|..
T Consensus 173 ~aGf~v~~~~~~pi~g~~gn~e~l~~~~~~~ 203 (232)
T 3opn_A 173 QLGFSVKGLTFSPIKGGAGNVEFLVHLLKDG 203 (232)
T ss_dssp HHTEEEEEEEECSSCBTTTBCCEEEEEEESS
T ss_pred HCCCEEEEEEEccCCCCCCCHHHHHHHhhcc
Confidence 9999988775432 23666677643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=142.23 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=106.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCC---CCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVP---DKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LP---f~~~sFD 179 (274)
++.+.+.++.+|| +|||||.++..+++. ++ ++|+|+|+|++|++.++++ .++++++++|+++.. ..+++||
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCce
Confidence 4444578899999 999999999999876 55 7999999999999988765 357999999998832 2246899
Q ss_pred EEEecccCcCCCCHH-HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 180 VVFLYFLPAMPFPLD-QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~-~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+|++... . .+.. .+++++.|+|||||++++.... ... . .... .. -...+++.++ +++ |+++...+
T Consensus 146 ~v~~~~~--~-~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~-~----~~~~--~~-~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 146 VIFEDVA--Q-PTQAKILIDNAEVYLKRGGYGMIAVKS-RSI-D----VTKE--PE-QVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp EEEECCC--S-TTHHHHHHHHHHHHEEEEEEEEEEEEG-GGT-C----TTSC--HH-HHHHHHHHHH-HTT-SEEEEEEE
T ss_pred EEEECCC--C-HhHHHHHHHHHHHhcCCCCEEEEEEec-CCC-C----CCCC--hh-hhhHHHHHHH-Hhh-ceeeeEec
Confidence 9998754 2 3444 4499999999999999996211 100 0 0000 00 0124677766 777 99988776
Q ss_pred ----cCCeEEEEEEec
Q 023974 259 ----ESGFYLVVLKFS 270 (274)
Q Consensus 259 ----~~~~yl~v~~~~ 270 (274)
++++|++|++++
T Consensus 212 ~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 212 LEPYEKDHALFVVRKT 227 (227)
T ss_dssp CTTTSSSEEEEEEECC
T ss_pred cCcccCCCEEEEEEeC
Confidence 344788888863
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=142.54 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCC---CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC
Q 023974 103 QRIDQIISAGEID---ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP 172 (274)
Q Consensus 103 ~w~~~ll~~~~~~---~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP 172 (274)
.+.+.+++.+... ++.+|| +|||||.++..++...+ .+|+|+|+|+.|++.|+++ .++++++++|+++++
T Consensus 49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 128 (207)
T 1jsx_A 49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP 128 (207)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence 3555555554332 478999 99999999999988765 7999999999999999975 245899999999987
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
.+++||+|+++. +.++..+++++.++|||||++++.+.. ...+++.++++ ||+
T Consensus 129 -~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~--------------------~~~~~~~~~~~--g~~ 181 (207)
T 1jsx_A 129 -SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ--------------------MPEDEIALLPE--EYQ 181 (207)
T ss_dssp -CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS--------------------CCHHHHHTSCT--TEE
T ss_pred -ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC--------------------CchHHHHHHhc--CCc
Confidence 468999999753 357889999999999999999997432 12345555544 898
Q ss_pred EeEEE-----e-cCCeEEEEEEecC
Q 023974 253 IDNFV-----D-ESGFYLVVLKFSK 271 (274)
Q Consensus 253 ~v~~~-----d-~~~~yl~v~~~~~ 271 (274)
.+... + ....++++++|.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~k~~ 206 (207)
T 1jsx_A 182 VESVVKLQVPALDGERHLVVIKANK 206 (207)
T ss_dssp EEEEEEEECC--CCEEEEEEEEECC
T ss_pred eeeeeeeccCCCCCceEEEEEEecc
Confidence 76532 1 2234666666643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=141.08 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCC--CCCCCccEEEeccc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVP--DKWGPLDVVFLYFL 186 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LP--f~~~sFD~V~~~f~ 186 (274)
.++.+|| +|||||.++..+++.+..+|+|+|+|++|++.|+++. ++++++++|+.+++ +.+++||+|+++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 5778999 9999999999877765468999999999999999863 47899999999875 44789999999876
Q ss_pred CcCC-CCHHHHHHHHHH--hcCCCCEEEEEcC
Q 023974 187 PAMP-FPLDQVFETLAN--RCSPGARVVISHP 215 (274)
Q Consensus 187 l~~~-~d~~~al~el~R--vLKPGGrlvIs~~ 215 (274)
+++. .+.+++++++.+ +|||||+++|.++
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 6664 678899999999 9999999999764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-18 Score=157.49 Aligned_cols=107 Identities=20% Similarity=0.139 Sum_probs=92.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
+.+.+.+.+.+.++.+|| ||||||.++..+++.+..+|+|||+|+ |++.|+++. ++++++++|+++++++++
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 556666666778889999 999999999999887546999999996 999999863 578999999999999889
Q ss_pred CccEEEecc---cCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 177 PLDVVFLYF---LPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 177 sFD~V~~~f---~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
+||+|++.. .+.+..+++.++.++.|+|||||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999864 56666778899999999999999998
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=143.86 Aligned_cols=129 Identities=16% Similarity=0.085 Sum_probs=105.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC-----CC-ceEEEeeccCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY-----DT-VKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~-----~~-v~~~~gDae~LPf~ 174 (274)
....++..+.+.++.+|| +|||||.++..+++. ++ .+|+|+|+|++|++.|+++. ++ +++.++|+.+. +.
T Consensus 81 ~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 159 (255)
T 3mb5_A 81 DAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IE 159 (255)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CC
T ss_pred HHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cC
Confidence 455777888999999999 999999999999988 66 89999999999999999873 44 89999999865 67
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCC--Cc
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC--FQ 252 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aG--F~ 252 (274)
+++||+|+++ .+++.++++++.++|||||++++..+... ..+++.+.+++.| |.
T Consensus 160 ~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-------------------~~~~~~~~l~~~g~~f~ 215 (255)
T 3mb5_A 160 EENVDHVILD-----LPQPERVVEHAAKALKPGGFFVAYTPCSN-------------------QVMRLHEKLREFKDYFM 215 (255)
T ss_dssp CCSEEEEEEC-----SSCGGGGHHHHHHHEEEEEEEEEEESSHH-------------------HHHHHHHHHHHTGGGBS
T ss_pred CCCcCEEEEC-----CCCHHHHHHHHHHHcCCCCEEEEEECCHH-------------------HHHHHHHHHHHcCCCcc
Confidence 7899999983 45788999999999999999999755321 1245667778888 86
Q ss_pred EeEEE
Q 023974 253 IDNFV 257 (274)
Q Consensus 253 ~v~~~ 257 (274)
.+...
T Consensus 216 ~~~~~ 220 (255)
T 3mb5_A 216 KPRTI 220 (255)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 55543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=148.16 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=108.6
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
+.++.+|| +|||||.++..+++.++ +|+|+|+|+.|++.|+++.. .+++.++|+.+. +.+++||+|+++...+
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 56788999 99999999999988876 99999999999999998632 288999998773 3467999999985443
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVVLK 268 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v~~ 268 (274)
. ...+++++.++|||||+++++.... .+.+++.+.++++||+++.....++.+.++++
T Consensus 196 ~---~~~~l~~~~~~LkpgG~lils~~~~-------------------~~~~~v~~~l~~~Gf~~~~~~~~~~W~~l~~~ 253 (254)
T 2nxc_A 196 L---HAALAPRYREALVPGGRALLTGILK-------------------DRAPLVREAMAGAGFRPLEEAAEGEWVLLAYG 253 (254)
T ss_dssp H---HHHHHHHHHHHEEEEEEEEEEEEEG-------------------GGHHHHHHHHHHTTCEEEEEEEETTEEEEEEE
T ss_pred H---HHHHHHHHHHHcCCCCEEEEEeecc-------------------CCHHHHHHHHHHCCCEEEEEeccCCeEEEEEE
Confidence 2 5789999999999999999974321 12578999999999999998888887777776
Q ss_pred e
Q 023974 269 F 269 (274)
Q Consensus 269 ~ 269 (274)
|
T Consensus 254 k 254 (254)
T 2nxc_A 254 R 254 (254)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=146.47 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=85.7
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC-C--CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV-P--DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L-P--f~~~sFD~V~~~f 185 (274)
++.+|| ||||||.++..+++..+ ..|+|||+|++|++.|+++ ..+++++++|++++ + +++++||.|+++|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999 99999999999999887 7899999999999999876 45799999999984 4 7889999999987
Q ss_pred cCcCCCCHH--------HHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMPFPLD--------QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~d~~--------~al~el~RvLKPGGrlvIs~~ 215 (274)
...|..... +++++++|+|||||+|+|.+.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 655543322 599999999999999999754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=152.46 Aligned_cols=154 Identities=8% Similarity=0.117 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHhCCCC-CCCeEE-EEcCc---hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-----CceEEEeec
Q 023974 100 EHIQRIDQIISAGEID-ESSKVL-VSISS---EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-----TVKCWQGEL 168 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~-~~~rVL-vGcGT---G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDa 168 (274)
..+.|+.++++.+... ...+|| ||||+ |.+...+.+..| .+|++||.|+.||+.||++.. ++.|+++|+
T Consensus 61 ~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~ 140 (277)
T 3giw_A 61 ANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred HHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence 4455677777666432 336899 99997 344444444456 899999999999999999864 389999999
Q ss_pred cCCC------CCCCCcc-----EEEecccCcCCCC---HHHHHHHHHHhcCCCCEEEEEcCCC---hhHHHHHHhhCccc
Q 023974 169 IYVP------DKWGPLD-----VVFLYFLPAMPFP---LDQVFETLANRCSPGARVVISHPQG---REALQKQRKQFPDV 231 (274)
Q Consensus 169 e~LP------f~~~sFD-----~V~~~f~l~~~~d---~~~al~el~RvLKPGGrlvIs~~~g---r~~l~~~~~~~~~~ 231 (274)
.+++ ...+.|| +|+++.++||+.| +.+++++++++|+|||+|+|++... ....+++...|...
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~ 220 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAAR 220 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHT
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhc
Confidence 8863 2235566 6888899999988 5689999999999999999986442 22334444434221
Q ss_pred -ccccCCCHHHHHHHHHhCCCcEeE
Q 023974 232 -IVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 232 -si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
....|.+.+|+..++. ||++++
T Consensus 221 g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 221 NMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp TCCCCCCCHHHHHHTTT--TSEECT
T ss_pred CCCCccCCHHHHHHHhC--CCcccC
Confidence 2346789999999995 998543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=152.41 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=115.2
Q ss_pred HHHHhC--CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 107 QIISAG--EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 107 ~ll~~~--~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
.+++.. .+.++.+|| ||||||.++..++++.| .+++++|+ +.|++.|++ +++++++++|+.+ |++ .||+|+
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~d~~~-~~~--~~D~v~ 256 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG-NENLNFVGGDMFK-SIP--SADAVL 256 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC-CSSEEEEECCTTT-CCC--CCSEEE
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc-CCCcEEEeCccCC-CCC--CceEEE
Confidence 344444 445678999 99999999999999887 78999999 799998876 5779999999987 765 499999
Q ss_pred ecccCcCCCCHH--HHHHHHHHhcCC---CCEEEEEcCC----Chh----HHHHHHhhC-cccccccCCCHHHHHHHHHh
Q 023974 183 LYFLPAMPFPLD--QVFETLANRCSP---GARVVISHPQ----GRE----ALQKQRKQF-PDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 183 ~~f~l~~~~d~~--~al~el~RvLKP---GGrlvIs~~~----gr~----~l~~~~~~~-~~~si~~fps~~eL~~ll~~ 248 (274)
+...+|++.|.+ +++++++|+||| ||+|+|.+.. ... ......... .........+.+++.+++++
T Consensus 257 ~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 336 (358)
T 1zg3_A 257 LKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYD 336 (358)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHH
T ss_pred EcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHH
Confidence 999999988877 999999999999 9999996432 110 111111100 00112346789999999999
Q ss_pred CCCcEeEEEecCCe
Q 023974 249 HCFQIDNFVDESGF 262 (274)
Q Consensus 249 aGF~~v~~~d~~~~ 262 (274)
+||+++........
T Consensus 337 aGf~~~~~~~~~~~ 350 (358)
T 1zg3_A 337 AGFSSYKITPISGF 350 (358)
T ss_dssp TTCCEEEEEEETTT
T ss_pred cCCCeeEEEecCCC
Confidence 99998888775554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=137.27 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~ 176 (274)
.....+++.+.+.++.+|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++ +++++++++|+.+.+..++
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA 142 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence 3456777888899999999 9999999999998885 5999999999999999986 3578999999999887789
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+||+|++...++++.+ ++.++|||||++++..+.
T Consensus 143 ~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 143 PFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 9999999988888764 688999999999997554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=144.02 Aligned_cols=136 Identities=7% Similarity=0.035 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf 173 (274)
....+..+++.+. .++.+|| +|||||.++..+++..+ .+|+|+|+|++|++.|+++. ++++++++|+.+. +
T Consensus 95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~ 172 (276)
T 2b3t_A 95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-L 172 (276)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-G
T ss_pred HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-c
Confidence 3446677777765 6678999 99999999999987765 79999999999999999863 4699999999873 4
Q ss_pred CCCCccEEEecccCcCC-------------------------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 174 KWGPLDVVFLYFLPAMP-------------------------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~-------------------------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
.+++||+|+++.-.... .+.+++++++.++|||||++++.+..
T Consensus 173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~------------ 240 (276)
T 2b3t_A 173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW------------ 240 (276)
T ss_dssp TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------
T ss_pred ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------
Confidence 46899999998322211 24578899999999999999997432
Q ss_pred cccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 229 PDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 229 ~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
.+.+++.++++++||+.+....
T Consensus 241 --------~~~~~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 241 --------QQGEAVRQAFILAGYHDVETCR 262 (276)
T ss_dssp --------SCHHHHHHHHHHTTCTTCCEEE
T ss_pred --------hHHHHHHHHHHHCCCcEEEEEe
Confidence 2367899999999997655443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=140.91 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=94.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC--------CCceEEEeeccCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY--------DTVKCWQGELIYVP 172 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~--------~~v~~~~gDae~LP 172 (274)
-...++..+.+.++.+|| +|||+|.++..+++. ++ .+|+|+|+|++|++.|+++. ++++++++|+.+++
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345677778899999999 999999999999885 55 79999999999999999762 47899999999999
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+.+++||+|++. ..++.++++++.++|||||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 888999999983 347789999999999999999997654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-18 Score=148.33 Aligned_cols=152 Identities=6% Similarity=-0.015 Sum_probs=102.1
Q ss_pred HHHHHHHHhCCC--CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCC-
Q 023974 103 QRIDQIISAGEI--DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYV- 171 (274)
Q Consensus 103 ~w~~~ll~~~~~--~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~L- 171 (274)
.++..+++.+.. .++.+|| +|||||.++..++++.+ .+|+|+|+|++|++.|+++. . +++++++|+++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 366666654433 2577999 99999999988887643 79999999999999999863 2 389999998773
Q ss_pred --CCC---CCCccEEEecccCcCCC---------------CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh----
Q 023974 172 --PDK---WGPLDVVFLYFLPAMPF---------------PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ---- 227 (274)
Q Consensus 172 --Pf~---~~sFD~V~~~f~l~~~~---------------d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~---- 227 (274)
++. +++||+|+++-.++... .....+.+++|+|||||++++.+. .+......
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~----~~~~~~~~l~~~ 205 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR----IIHDSLQLKKRL 205 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHH----HHHHHHHHGGGB
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH----HHHHHHhcccce
Confidence 444 36899999983222111 122457899999999999988642 22222111
Q ss_pred -CcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 228 -FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 228 -~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+...........+++.++++++||+.+.+.+
T Consensus 206 g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 206 RWYSCMLGKKCSLAPLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp SCEEEEESSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEEECCCChhHHHHHHHHHHHcCCCceEEEE
Confidence 1111223345558999999999998776654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-16 Score=143.46 Aligned_cols=161 Identities=10% Similarity=0.090 Sum_probs=121.5
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCc
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sF 178 (274)
..+++...+....+|| ||||+|.++..++++.| .+++..|. ++|++.|+++. ++++++.||..+-|.. .+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~ 245 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EA 245 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--Cc
Confidence 4566677778888999 99999999999999988 78888887 88999999874 4699999999776654 47
Q ss_pred cEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC-----hhHHHHHHhhC-cccccccCCCHHHHHHHHHhCC
Q 023974 179 DVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG-----REALQKQRKQF-PDVIVSDLPDQMTLQKAAGNHC 250 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g-----r~~l~~~~~~~-~~~si~~fps~~eL~~ll~~aG 250 (274)
|+|++...+|+++|.+ ++|++++++|||||+|+|.+..- ........... .......-.|.+|++++++++|
T Consensus 246 D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AG 325 (353)
T 4a6d_A 246 DLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAG 325 (353)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHT
T ss_pred eEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCC
Confidence 9999999999887764 67999999999999999975321 11112211110 0001123468999999999999
Q ss_pred CcEeEEEecCC-eEEEEEEe
Q 023974 251 FQIDNFVDESG-FYLVVLKF 269 (274)
Q Consensus 251 F~~v~~~d~~~-~yl~v~~~ 269 (274)
|+.+++..... +.+++.||
T Consensus 326 f~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 326 FRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp CEEEEEECCSSSCEEEEEEC
T ss_pred CceEEEEEcCCceEEEEEEe
Confidence 99998877544 44555555
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=150.58 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=90.4
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC----------------CCceEEE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY----------------DTVKCWQ 165 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~----------------~~v~~~~ 165 (274)
...++..+.+.++.+|| +|||+|.++..+++. ++ ++|+|+|++++|++.|+++. +++++++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 45667777889999999 999999999999887 67 89999999999999999853 4689999
Q ss_pred eeccCC--CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH---HHHHHhh-C--ccc------
Q 023974 166 GELIYV--PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA---LQKQRKQ-F--PDV------ 231 (274)
Q Consensus 166 gDae~L--Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~---l~~~~~~-~--~~~------ 231 (274)
+|++++ ++.+++||+|++.. .++..+++++.++|||||+|++..+..... ++.+... + ...
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 248 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVI 248 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEEEEECCC
T ss_pred CChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccceEEEec
Confidence 999987 56678999999853 345568999999999999999976543222 2222221 1 000
Q ss_pred -----ccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 232 -----IVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 232 -----si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
....-....+..+.++++||+++..++.
T Consensus 249 ~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~ 281 (336)
T 2b25_A 249 VRDWLVCLAKQKNGILAQKVESKINTDVQLDSQ 281 (336)
T ss_dssp CCCEEECC-------------------------
T ss_pred ccceEEEeecccccchhhhhccccccccccccc
Confidence 0000111227778999999988876654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=142.70 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=103.1
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
..++..+.+.++.+|| +|||+|.++..+++. ++ .+|+++|+|++|++.|+++. ++++++++|+.+. +.++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~ 180 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEK 180 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCC
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCC
Confidence 4567777889999999 999999999999988 65 89999999999999999863 4689999999887 5668
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
+||+|+++ ++++.++++++.++|||||++++..+.... .+++.+.+++.||..+..
T Consensus 181 ~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-------------------~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 181 DVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPTTNQ-------------------VQETLKKLQELPFIRIEV 236 (277)
T ss_dssp SEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESSHHH-------------------HHHHHHHHHHSSEEEEEE
T ss_pred ccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHHH-------------------HHHHHHHHHHCCCceeEE
Confidence 99999984 457889999999999999999997653111 235556677788865554
Q ss_pred E
Q 023974 257 V 257 (274)
Q Consensus 257 ~ 257 (274)
.
T Consensus 237 ~ 237 (277)
T 1o54_A 237 W 237 (277)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=144.59 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----------CCCceEEEeeccC-CC--CCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----------YDTVKCWQGELIY-VP--DKWGP 177 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----------~~~v~~~~gDae~-LP--f~~~s 177 (274)
..++.+|| ||||+|.++..|++..+ ..|+|||+|+.|++.|+++ .++++++++|+++ +| +.+++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 45667999 99999999999998877 7899999999999998753 3579999999997 77 78899
Q ss_pred ccEEEecccCcCCCC--------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 178 LDVVFLYFLPAMPFP--------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 178 FD~V~~~f~l~~~~d--------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
||.|++.|.-.|... ...++++++|+|||||+|+|...
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999998765433211 14799999999999999999644
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-17 Score=142.75 Aligned_cols=127 Identities=9% Similarity=0.015 Sum_probs=100.3
Q ss_pred hCCCC-CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCC--CCCCCccE
Q 023974 111 AGEID-ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVP--DKWGPLDV 180 (274)
Q Consensus 111 ~~~~~-~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LP--f~~~sFD~ 180 (274)
.+.+. ++.+|| +|||||.++..++++++.+|+|||+++.|++.|+++. . +++++++|+.+++ +.+++||+
T Consensus 43 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~ 122 (259)
T 3lpm_A 43 FSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADI 122 (259)
T ss_dssp HCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEE
T ss_pred HhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccE
Confidence 35677 889999 9999999999998886679999999999999999863 2 4899999999987 45799999
Q ss_pred EEecccCcCC--------------------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHH
Q 023974 181 VFLYFLPAMP--------------------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQM 240 (274)
Q Consensus 181 V~~~f~l~~~--------------------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~ 240 (274)
|+++-.+... .+.+++++++.++|||||++++.++..+ .+
T Consensus 123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------~~ 182 (259)
T 3lpm_A 123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER--------------------LL 182 (259)
T ss_dssp EEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT--------------------HH
T ss_pred EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH--------------------HH
Confidence 9997222111 2356799999999999999999754321 35
Q ss_pred HHHHHHHhCCCcEeEEE
Q 023974 241 TLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 241 eL~~ll~~aGF~~v~~~ 257 (274)
++.+.+++.||......
T Consensus 183 ~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 183 DIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp HHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHCCCceEEEE
Confidence 67778888899765543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=129.70 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=89.7
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------- 172 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------- 172 (274)
+..+++... +.++.+|| +|||||.++..+++. ++ .+|+|+|+|+ |++. +++++.++|+++++
T Consensus 10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhcc
Confidence 345555544 67889999 999999999999887 56 7999999999 8753 67999999999987
Q ss_pred CCCCCccEEEecccCcCCCCH-----------HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKWGPLDVVFLYFLPAMPFPL-----------DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~-----------~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+.+++||+|+++..+++..+. .++++++.++|||||++++..+.
T Consensus 84 ~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 778899999998888777666 79999999999999999996543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=137.48 Aligned_cols=106 Identities=10% Similarity=0.065 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCCCCCCc
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf~~~sF 178 (274)
.....+++.+.+.++.+|| ||||+|.++..+++.+ .+|+|+|+|++|++.|+++.. +++++++|+++....+++|
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 3566788888889999999 9999999999998887 699999999999999998865 6899999998843357899
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+|++...++++. .++.++|||||++++..+
T Consensus 136 D~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLL------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred cEEEECCcHHHHH------HHHHHHcCCCcEEEEEEc
Confidence 9999998888764 378899999999999754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=152.74 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
+.+.+++...+.++.+|| ||||||.++..+++.+..+|+|||+| .|++.|+++. ..++++++|+++++++ +
T Consensus 51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 128 (376)
T 3r0q_C 51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-E 128 (376)
T ss_dssp HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-S
T ss_pred HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-C
Confidence 455566666778899999 99999999999988865699999999 9999999863 2389999999999976 8
Q ss_pred CccEEEecccC---cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLP---AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l---~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+||+|++.... .+..+++.+++++.|+|||||++++.
T Consensus 129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99999986433 33357889999999999999999873
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-17 Score=141.85 Aligned_cols=99 Identities=16% Similarity=0.097 Sum_probs=83.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCC--CCCC-ccEEEec
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPD--KWGP-LDVVFLY 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf--~~~s-FD~V~~~ 184 (274)
++.+|| +|||||.++..++.++..+|+|||+|++|++.|+++. ++++++++|+.+++. .+++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 578999 9999999999877766568999999999999999863 578999999988643 3678 9999998
Q ss_pred ccCcCCCCHHHHHHHH--HHhcCCCCEEEEEcC
Q 023974 185 FLPAMPFPLDQVFETL--ANRCSPGARVVISHP 215 (274)
Q Consensus 185 f~l~~~~d~~~al~el--~RvLKPGGrlvIs~~ 215 (274)
..++ ..+.+++++++ .|+|||||++++...
T Consensus 133 ~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 133 PPFH-FNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCC-CccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 6655 45778899999 778999999999654
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-16 Score=141.01 Aligned_cols=131 Identities=11% Similarity=0.047 Sum_probs=99.6
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCCCC--CCCCcc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYVPD--KWGPLD 179 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~LPf--~~~sFD 179 (274)
...++.+|| ||||+|.++..+++..+ .+|++||+|++|++.|+++. ++++++++|+.+++. .+++||
T Consensus 92 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD 171 (304)
T 3bwc_A 92 SHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD 171 (304)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence 345678999 99999999999987654 79999999999999999876 468999999998765 378999
Q ss_pred EEEecccCcCCCCH----HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 180 VVFLYFLPAMPFPL----DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 180 ~V~~~f~l~~~~d~----~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+|++.......++. .++++++.|+|||||++++.... . +.. ....+++.+.++++||..+.
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~-~-~~~-------------~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES-I-WLD-------------LELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC-T-TTC-------------HHHHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC-c-ccc-------------hHHHHHHHHHHHhCCCCcEE
Confidence 99987544332222 68999999999999999996332 1 100 01246788899999998766
Q ss_pred EEe
Q 023974 256 FVD 258 (274)
Q Consensus 256 ~~d 258 (274)
...
T Consensus 237 ~~~ 239 (304)
T 3bwc_A 237 YAL 239 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=135.75 Aligned_cols=105 Identities=6% Similarity=-0.050 Sum_probs=87.3
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCC---------ceEEEeeccCC-------C
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDT---------VKCWQGELIYV-------P 172 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~---------v~~~~gDae~L-------P 172 (274)
.+...++.+|| +|||||.++..++++.+ .+|+|||++++|++.|+++... ++++++|+.++ +
T Consensus 31 ~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 31 LVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp TCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT
T ss_pred HhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc
Confidence 35567788999 99999999999999876 7999999999999999988654 78999999987 3
Q ss_pred CCCCCccEEEecccCcC------------------CCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 173 DKWGPLDVVFLYFLPAM------------------PFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~------------------~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+++||+|+++--+.. ..+.+.+++++.++|||||+|++.++
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 56789999999822111 12478899999999999999999755
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=138.76 Aligned_cols=103 Identities=13% Similarity=0.208 Sum_probs=84.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-------------CCCceEEEeeccC-CC--CC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-------------YDTVKCWQGELIY-VP--DK 174 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-------------~~~v~~~~gDae~-LP--f~ 174 (274)
.+.++.+|| ||||||.++..+++.++ ..|+|||+|+.|++.|+++ .++++++++|+.+ +| +.
T Consensus 46 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 46 QMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred cCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 445778999 99999999999999887 6899999999999998763 3679999999997 77 77
Q ss_pred CCCccEEEecccCcCCCCH--------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 175 WGPLDVVFLYFLPAMPFPL--------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~--------~~al~el~RvLKPGGrlvIs~~ 215 (274)
++++|.|++.+.--+.... .++++++.++|||||+|++...
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 8999999977543221111 4899999999999999999533
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=133.06 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=89.1
Q ss_pred HHHHHHHhC-CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC----
Q 023974 104 RIDQIISAG-EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV---- 171 (274)
Q Consensus 104 w~~~ll~~~-~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L---- 171 (274)
.+..+++.+ ...++.+|| +|||||.++..+++.+..+|+|+|+|++|++.|+++. ++++++++|+.+.
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF 110 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence 445555555 345788999 9999999999887754469999999999999999763 3689999999873
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHH--HHhcCCCCEEEEEcCC
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETL--ANRCSPGARVVISHPQ 216 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el--~RvLKPGGrlvIs~~~ 216 (274)
|+.+++||+|+++..++ ..+.+++++.+ .|+|||||++++..+.
T Consensus 111 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 111 YEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp HHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 23378999999986544 34678888888 9999999999997543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=132.93 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~ 174 (274)
.....+++.+.+.++.+|| ||||+|.++..+++.. + .+|+|+|+|++|++.|+++. +++++.++|+......
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 3456777778889999999 9999999999998875 4 79999999999999999863 5689999998654334
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+++||+|++...++++. .++.++|||||++++..+.
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 68999999998888774 4889999999999997543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=137.67 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=83.9
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCCCCCCccEEEecccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf~~~sFD~V~~~f~l~ 188 (274)
++.+|| +|||||.++..++.++..+|+|||+|++|++.|+++. ++++++++|+++ +|..+++||+|++...++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 578999 9999999999877766469999999999999999764 478999999988 677778999999986555
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEcC
Q 023974 189 MPFPLDQVFETLAN--RCSPGARVVISHP 215 (274)
Q Consensus 189 ~~~d~~~al~el~R--vLKPGGrlvIs~~ 215 (274)
..+..++++++.+ +|||||++++.+.
T Consensus 134 -~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 134 -RGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 3577889999966 5999999999743
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-17 Score=151.13 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=86.3
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEec
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
..+.++.+|| ||||||.++..+++.+..+|+|||+| +|++.|+++. + .++++++|++++|+++++||+|++.
T Consensus 62 ~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~ 140 (349)
T 3q7e_A 62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE 140 (349)
T ss_dssp HHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred cccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence 3456788999 99999999999988754799999999 5999999763 2 3899999999999999999999986
Q ss_pred c---cCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 F---LPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f---~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. .+.+..+++.+++++.|+|||||+++.
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 3 355667899999999999999999875
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.1e-17 Score=134.54 Aligned_cols=110 Identities=21% Similarity=0.093 Sum_probs=88.0
Q ss_pred HHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCC
Q 023974 105 IDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKW 175 (274)
Q Consensus 105 ~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~ 175 (274)
+..+++.+. ..++.+|| +|||+|.++..+++.+..+|+|+|+|++|++.|+++. ++++++++|+.+ ++..+
T Consensus 19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 98 (177)
T 2esr_A 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT 98 (177)
T ss_dssp HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence 344555554 56788999 9999999999988874379999999999999999864 358899999988 56566
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHH--HhcCCCCEEEEEcC
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLA--NRCSPGARVVISHP 215 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~--RvLKPGGrlvIs~~ 215 (274)
++||+|+++..++. .+.+++++.+. ++|||||++++...
T Consensus 99 ~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 99 GRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp SCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 78999999854432 35577888887 99999999999754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=131.34 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=91.6
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~s 177 (274)
...+++.+++.++.+|| +|||+|.++..+++. ..+|+++|+|++|++.|+++. +++++.++|+.+....+++
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 45677778889999999 999999999999887 469999999999999999863 5689999999886546789
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||+|+++ .+++.++++++.++|||||++++..+.
T Consensus 159 ~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 9999984 347889999999999999999998664
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=135.53 Aligned_cols=132 Identities=5% Similarity=0.072 Sum_probs=102.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~~ 176 (274)
.+.++.+. +.++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++ .. .++++++|+.+++. ++
T Consensus 115 ~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~ 191 (278)
T 2frn_A 115 ERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-EN 191 (278)
T ss_dssp HHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CS
T ss_pred HHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cC
Confidence 34444444 45788999 999999999999988754799999999999999976 23 38899999999987 78
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
+||+|++... .+..+++.++.|+|||||++++.+...... ..-...+++.+.++++||+...
T Consensus 192 ~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 192 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred CccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-------------ccccHHHHHHHHHHHcCCeeEE
Confidence 9999998633 355789999999999999999964321111 0112357888999999997765
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=129.29 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=84.1
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC---CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------
Q 023974 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP---SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------ 172 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~---~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------ 172 (274)
++.++++... +.++.+|| ||||||.++..++++.+ ++|+|+|+|+ | ...++++++++|+++++
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~-----~~~~~v~~~~~d~~~~~~~~~~~ 82 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI-M-----DPIPNVYFIQGEIGKDNMNNIKN 82 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC-C-----CCCTTCEEEECCTTTTSSCCC--
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc-c-----CCCCCceEEEccccchhhhhhcc
Confidence 3445555544 57888999 99999999999988743 6899999999 3 13567999999999987
Q ss_pred -------------------CCCCCccEEEecccCcCC----CCHH-------HHHHHHHHhcCCCCEEEEEcC
Q 023974 173 -------------------DKWGPLDVVFLYFLPAMP----FPLD-------QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 -------------------f~~~sFD~V~~~f~l~~~----~d~~-------~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+++||+|++...+++. .|.. ++++++.|+|||||+|++...
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 567899999998777663 2322 389999999999999998543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=150.22 Aligned_cols=114 Identities=8% Similarity=0.030 Sum_probs=93.8
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHH-------HHh-------CCCceEEE
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGI-------KEK-------YDTVKCWQ 165 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~A-------r~k-------~~~v~~~~ 165 (274)
...+..+++.+++.++.+|| ||||||.++..+++..+ .+|+|||+|+.|++.| +++ +.++++++
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 45778888889999999999 99999999999988644 6899999999998888 654 35789999
Q ss_pred eeccCC--CC--CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 166 GELIYV--PD--KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 166 gDae~L--Pf--~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
||.... ++ ..++||+|+++..+ +.+++.++++++.|+|||||+|++.++.
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 876532 22 35799999987555 4468889999999999999999997544
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=140.54 Aligned_cols=105 Identities=10% Similarity=-0.010 Sum_probs=85.4
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~sFD~V 181 (274)
..+.+.++.+|| +|||+|..+..+++.. + ++|+|+|+|+.|++.++++. ++++++++|+.+++..+++||+|
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~I 191 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 191 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEE
Confidence 445788999999 9999999999998864 3 79999999999999999863 57899999999988767899999
Q ss_pred Eec-----cc-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 182 FLY-----FL-PAMPFP----------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 182 ~~~-----f~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
++. .+ ++..++ ..+++++++++|||||+|++++
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st 246 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 246 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 974 11 222221 1589999999999999999964
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-16 Score=149.31 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.++.+|| +|||+|.++..+++.+ .+|+|||+|+.|++.|+++.. +++++++|+.+.+..+++||+|+++..+++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4678999 9999999999998876 499999999999999998742 489999999999887899999999977776
Q ss_pred -----CCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 190 -----PFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 190 -----~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
..+..++++++.++|||||+++|..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 5567799999999999999999964
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-16 Score=140.72 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~ 174 (274)
.....+++.+.+.++.+|| ||||+|.++..+++.++ ++|+|+|+|++|++.|+++ .+++++.++|+.+.+..
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 3567788888999999999 99999999999988753 5699999999999999986 35689999999997666
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++||+|++...++++. +++.++|||||+++|..
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEE
Confidence 78999999998888774 57788999999999963
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=139.99 Aligned_cols=106 Identities=6% Similarity=0.011 Sum_probs=87.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----CC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----SP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf~ 174 (274)
.+..++.. .++.+|| ||||||..+..|++. ++ ++|+|||+|++|++.|+...+++++++||+.++ |..
T Consensus 72 ~l~~~l~~---~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~ 148 (236)
T 2bm8_A 72 VYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL 148 (236)
T ss_dssp HHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG
T ss_pred HHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhh
Confidence 44444443 3467999 999999999999886 45 899999999999999986567899999999984 654
Q ss_pred C-CCccEEEecccCcCCCCHHHHHHHHHH-hcCCCCEEEEEcC
Q 023974 175 W-GPLDVVFLYFLPAMPFPLDQVFETLAN-RCSPGARVVISHP 215 (274)
Q Consensus 175 ~-~sFD~V~~~f~l~~~~d~~~al~el~R-vLKPGGrlvIs~~ 215 (274)
+ .+||+|++... + .+..++++++.| +|||||+|+|.+.
T Consensus 149 ~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 149 REMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 48999998765 2 378899999998 9999999999754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=138.99 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
....++..++..++.+|| +|||||.++..++..+ + .+|+|+|+++.|++.|+++. +++++.++|+.++|...
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 455677778889999999 9999999999998865 5 79999999999999999863 26899999999999888
Q ss_pred CCccEEEec--ccCcCCCC------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 176 GPLDVVFLY--FLPAMPFP------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 176 ~sFD~V~~~--f~l~~~~d------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++||+|+++ |+.+.... ..++++++.|+|||||+++|..+
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 889999997 55554322 26789999999999999999754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-16 Score=135.43 Aligned_cols=102 Identities=10% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CCC--CCCccE
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PDK--WGPLDV 180 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf~--~~sFD~ 180 (274)
+...++.+|| ||||+|.++..+++..+ .+|+|+|+|++|++.|+++. ++++++++|+.+. |.. +++||+
T Consensus 50 ~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (233)
T 2gpy_A 50 LKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDV 129 (233)
T ss_dssp HHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred HhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccE
Confidence 3445778999 99999999999998865 79999999999999999873 3589999999884 544 689999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|++.... .+..++++++.++|||||++++.+..
T Consensus 130 I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 130 LFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp EEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred EEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 9998664 37789999999999999999997543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-17 Score=132.06 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=85.7
Q ss_pred HHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccC-CCC---
Q 023974 105 IDQIISAGE--IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIY-VPD--- 173 (274)
Q Consensus 105 ~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~-LPf--- 173 (274)
...+++.+. +.++.+|| +|||||.++..+++.++ .|+|+|+|++|++.|+++.. +++++++|+.+ ++.
T Consensus 28 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 106 (171)
T 1ws6_A 28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA 106 (171)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhc
Confidence 334444433 33678999 99999999999988876 59999999999999998643 78999999987 332
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHH--HhcCCCCEEEEEcCC
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
.+++||+|+++..++ .+.+++++++. ++|||||++++..+.
T Consensus 107 ~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 107 QGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 235899999985544 46677888888 999999999997543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-16 Score=143.47 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
+.+.+++...+.++.+|| ||||||.++..+++.+..+|+|||+| .|++.|+++. ++++++++|+++++++++
T Consensus 26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 104 (328)
T 1g6q_1 26 YRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFP 104 (328)
T ss_dssp HHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSS
T ss_pred HHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCC
Confidence 344444455566788999 99999999999888754699999999 6999998763 358999999999998889
Q ss_pred CccEEEec---ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 177 PLDVVFLY---FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~---f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+||+|++. +.+.+..+++.++.++.|+|||||++++
T Consensus 105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999987 3455667889999999999999999974
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=142.46 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCeEE-EEcCchH----HHHHHHHh-CC----CcEEEEeCcHHHHHHHHHhC---------------------------
Q 023974 116 ESSKVL-VSISSEE----FVDRVVES-SP----SLLLVVHDSLFVLAGIKEKY--------------------------- 158 (274)
Q Consensus 116 ~~~rVL-vGcGTG~----l~~~L~~~-~~----~~V~gVD~S~~ML~~Ar~k~--------------------------- 158 (274)
++.+|| +|||||. ++..|++. +. .+|+|+|+|++||++|+++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 457999 9999998 55556554 31 38999999999999999862
Q ss_pred ---------CCceEEEeeccCCCCC-CCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 159 ---------DTVKCWQGELIYVPDK-WGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 159 ---------~~v~~~~gDae~LPf~-~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~ 216 (274)
..+.|.++|+.+.|+. .++||+|+|..++.++.+. ++++++++++|||||.|++.+..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 1478999999997765 6899999998888777554 69999999999999999997654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-17 Score=140.68 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=104.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.++.+|| +|||||.++..+++.+ .+|+|+|+|+.|++.|+++. ++++++++|+++++ .+++||+|+++..+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 3678999 9999999999999877 69999999999999999864 47899999999988 57899999999888
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++..++..++.+++++|||||++++.+. .+.... .........+.+++.+++...|.-.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~~------~~~~~~-~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~ 218 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRLS------KKITNN-IVYFLPRNADIDQVASLAGPGGQVEIEQNF 218 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHHH------HHHCSC-EEEEEETTBCHHHHHHTTCTTCCEEEEEEE
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHHH------HhhCCc-eEEECCCCCCHHHHHHHhccCCCEEEEehh
Confidence 8887777789999999999999766421 111000 001123345678888888887765554443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=129.80 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=88.2
Q ss_pred HHHHHHHhCC--CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh----------CCCceEEEeec
Q 023974 104 RIDQIISAGE--IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK----------YDTVKCWQGEL 168 (274)
Q Consensus 104 w~~~ll~~~~--~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k----------~~~v~~~~gDa 168 (274)
....+++.+. +.++.+|| ||||||.++..+++. ++ .+|+|+|+|+.|++.|+++ .+++++.++|+
T Consensus 63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 3445566664 78899999 999999999999887 45 6999999999999999875 34789999999
Q ss_pred cCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 169 IYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 169 e~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
...+..+++||+|++...++.+ ++++.++|||||+++++..
T Consensus 143 ~~~~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 143 RMGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp GGCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEES
T ss_pred ccCcccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEe
Confidence 9887778899999998776554 4688899999999999754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=134.95 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=100.1
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeC-cHHHHHHHHHhC---------------CCceEEEeec
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHD-SLFVLAGIKEKY---------------DTVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~-S~~ML~~Ar~k~---------------~~v~~~~gDa 168 (274)
+.+.+.....++.+|| ||||||.++..+++.+..+|+|+|+ |++|++.|+++. +++++...|+
T Consensus 69 ~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~ 148 (281)
T 3bzb_A 69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRW 148 (281)
T ss_dssp HHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCT
T ss_pred HHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecC
Confidence 3444444456788999 9999999999888766468999999 899999999865 3577776664
Q ss_pred cC----CCC--CCCCccEEEecccCcCCCCHHHHHHHHHHhcC---C--CCEEEEEcCCChhHHHHHHhhCcccccccCC
Q 023974 169 IY----VPD--KWGPLDVVFLYFLPAMPFPLDQVFETLANRCS---P--GARVVISHPQGREALQKQRKQFPDVIVSDLP 237 (274)
Q Consensus 169 e~----LPf--~~~sFD~V~~~f~l~~~~d~~~al~el~RvLK---P--GGrlvIs~~~gr~~l~~~~~~~~~~si~~fp 237 (274)
.+ ++. .+++||+|+++..+.+..+...+++++.++|| | ||+++|.....+..+. .
T Consensus 149 ~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~--------------~ 214 (281)
T 3bzb_A 149 GDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLA--------------E 214 (281)
T ss_dssp TSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------------------
T ss_pred CCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccc--------------h
Confidence 44 211 36899999998888888899999999999999 9 9998774222121110 0
Q ss_pred CHHHHHHHHHhCC-CcEeEEE
Q 023974 238 DQMTLQKAAGNHC-FQIDNFV 257 (274)
Q Consensus 238 s~~eL~~ll~~aG-F~~v~~~ 257 (274)
...++.+.+++.| |++....
T Consensus 215 ~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 215 RDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp -CTHHHHHHHHSTTEEEEEEE
T ss_pred hHHHHHHHHHhcCCEEEEEec
Confidence 1245666788889 8776653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=139.90 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~s 177 (274)
..+.+++.+...++.+|| +|||||.++..+++.++ .+|+|+|+|+.|++.|+++.. .++++++|+.+.+ +++
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~~ 261 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KGR 261 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CSC
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cCC
Confidence 456677777666778999 99999999999999887 699999999999999998742 3678899987654 689
Q ss_pred ccEEEecccCcC-----CCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 178 LDVVFLYFLPAM-----PFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 178 FD~V~~~f~l~~-----~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
||+|+++..+++ ..+.+++++++.|+|||||+++|..
T Consensus 262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 999999977764 3456899999999999999999964
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=131.56 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=86.3
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VP 172 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LP 172 (274)
+.+..++. ..++.+|| ||||||..+..+++.. + ++|+|||+|++|++.|+++. .+++++++|+.+ +|
T Consensus 48 ~~l~~l~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~ 124 (221)
T 3u81_A 48 QIMDAVIR---EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIP 124 (221)
T ss_dssp HHHHHHHH---HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred HHHHHHHH---hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHH
Confidence 34444443 34568999 9999999999998853 3 79999999999999999863 248999999866 55
Q ss_pred CCC-----CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKW-----GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~-----~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
... ++||+|++....++..+..+.++++ |+|||||+|++.+..
T Consensus 125 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp GTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred HHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 433 7999999987777665666778887 999999999996543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-16 Score=134.51 Aligned_cols=116 Identities=10% Similarity=0.060 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC-------CCceEEEe
Q 023974 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY-------DTVKCWQG 166 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~g 166 (274)
......+.+..++...+.+++.+|| ||||||..+..+++.. + ++|++||+|++|++.|+++. +++++++|
T Consensus 37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 3445555677777777666677999 9999999999998863 3 79999999999999999763 36899999
Q ss_pred eccCC-C-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 167 ELIYV-P-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 167 Dae~L-P-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+.++ + +.+++||+|++.... .+....++++.|+|||||+|++.+.
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred CHHHHHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 99775 3 337899999987543 4567899999999999999999544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8e-16 Score=134.79 Aligned_cols=100 Identities=10% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CC-CCCCCccEEEe
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VP-DKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LP-f~~~sFD~V~~ 183 (274)
..++.+|| ||||||..+..+++..+ .+|+|||+|++|++.|+++. ++++++++|+.+ +| ..+++||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999 99999999999988655 89999999999999999863 368999999977 45 45789999998
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
... ..+...+++++.++|||||+|++.+..
T Consensus 149 ~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 149 DAA---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp ETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred cCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 754 456788999999999999999995443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=130.40 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=88.2
Q ss_pred HHHHHHHhC--CCCCCCeEE-EEcCchHHHHHHHHhC-----C-CcEEEEeCcHHHHHHHHHh----------CCCceEE
Q 023974 104 RIDQIISAG--EIDESSKVL-VSISSEEFVDRVVESS-----P-SLLLVVHDSLFVLAGIKEK----------YDTVKCW 164 (274)
Q Consensus 104 w~~~ll~~~--~~~~~~rVL-vGcGTG~l~~~L~~~~-----~-~~V~gVD~S~~ML~~Ar~k----------~~~v~~~ 164 (274)
....+++.+ .+.++.+|| ||||+|.++..+++.. + ++|+|+|+|++|++.|+++ .++++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145 (227)
T ss_dssp HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence 344555555 578889999 9999999999998864 3 6999999999999999986 3578999
Q ss_pred EeeccCCC----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 165 QGELIYVP----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 165 ~gDae~LP----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
++|+.+.+ ..+++||+|++...++++ ++++.++|||||++++..+
T Consensus 146 ~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 146 HKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred ECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 99999876 667899999999777654 4788899999999999644
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=130.42 Aligned_cols=105 Identities=10% Similarity=0.052 Sum_probs=87.0
Q ss_pred HHHHHHHhC--CCCCCCeEE-EEcCchHHHHHHHHhCC-------CcEEEEeCcHHHHHHHHHh----------CCCceE
Q 023974 104 RIDQIISAG--EIDESSKVL-VSISSEEFVDRVVESSP-------SLLLVVHDSLFVLAGIKEK----------YDTVKC 163 (274)
Q Consensus 104 w~~~ll~~~--~~~~~~rVL-vGcGTG~l~~~L~~~~~-------~~V~gVD~S~~ML~~Ar~k----------~~~v~~ 163 (274)
+...+++.+ .+.++.+|| ||||+|.++..+++... ++|+|+|++++|++.|+++ .+++++
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 556667766 578899999 99999999999887522 4899999999999999976 357899
Q ss_pred EEeeccCCCCCC-CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 164 WQGELIYVPDKW-GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 164 ~~gDae~LPf~~-~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.++|+.+ ++.+ ++||+|++...++++. +++.++|||||+++|...
T Consensus 150 ~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 150 VEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred EECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 9999988 4444 8999999998877653 788899999999999643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=130.52 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=87.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCCC-
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKWG- 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~~- 176 (274)
....+++.+.+.++.+|| ||||+|.++..+++..+.+|+|+|+|++|++.|+++. +++++.++|+ ..++.++
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~ 157 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKA 157 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCC
Confidence 456677777888999999 9999999999998875469999999999999999863 4689999997 4455444
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+||+|++...++++. .++.++|||||+++|..+
T Consensus 158 ~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEe
Confidence 599999998887764 378899999999999754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=141.90 Aligned_cols=110 Identities=6% Similarity=-0.003 Sum_probs=90.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--------CceEEEeeccCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--------TVKCWQGELIYVPD 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--------~v~~~~gDae~LPf 173 (274)
..+.+++.+...++.+|| +|||||.++..+++.+| .+|+|||+|+.|++.|+++.. +++|.++|+.+ ++
T Consensus 210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~ 288 (375)
T 4dcm_A 210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GV 288 (375)
T ss_dssp HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TC
T ss_pred HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cC
Confidence 345667778777789999 99999999999999976 899999999999999998642 37789999988 56
Q ss_pred CCCCccEEEecccCcCCC-----CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 174 KWGPLDVVFLYFLPAMPF-----PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~-----d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.+++||+|+++..+++.. ...++++++.|+|||||+++|..
T Consensus 289 ~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 778999999996666421 12368999999999999999963
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=132.19 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=83.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCC--CCccEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKW--GPLDVV 181 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~--~sFD~V 181 (274)
..++.+|| ||||||..+..+++..+ ++|+|||+|++|++.|+++. ++++++++|+.+ +|..+ ++||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44678999 99999999999988742 79999999999999999863 368999999987 55443 499999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
++... ..+....++++.|+|||||+|++.+..
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 141 FIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred EECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 98753 445678999999999999999997554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-15 Score=125.85 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCC-CC---C-CCCcc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYV-PD---K-WGPLD 179 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~L-Pf---~-~~sFD 179 (274)
..++.+|| ||||||..+..+++..+ ++|+|+|++++|++.|+++. . +++++++|+.+. +. . .++||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999 99999999999988743 79999999999999999763 2 489999999663 21 1 26899
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+|++... ..+....++++.++|||||++++.+..
T Consensus 136 ~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 136 FIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9998754 335678999999999999999987554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-16 Score=139.85 Aligned_cols=104 Identities=9% Similarity=0.012 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-CC------CceEE--EeeccCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-YD------TVKCW--QGELIYVPD 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-~~------~v~~~--~gDae~LPf 173 (274)
++..+++...+.++.+|| ||||||.++..++++ ++|+|||+|+ |+..|+++ .+ ++.++ ++|++++|
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 455666666677899999 999999999999887 5899999999 87655443 22 68999 99999987
Q ss_pred CCCCccEEEecccCcCCCCH----H---HHHHHHHHhcCCCC--EEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPL----D---QVFETLANRCSPGA--RVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~----~---~al~el~RvLKPGG--rlvIs 213 (274)
+++||+|+|.++ ....++ . ++++++.|+||||| +|++.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 689999999876 333232 1 48999999999999 99984
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-15 Score=131.20 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=84.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh--CC-CcEEEEeCcHHHHHHHHHhCC---------C----------
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES--SP-SLLLVVHDSLFVLAGIKEKYD---------T---------- 160 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~--~~-~~V~gVD~S~~ML~~Ar~k~~---------~---------- 160 (274)
.+..+++.+...++.+|| +|||||.++..+++. .+ .+|+|+|+|+.|++.|+++.. .
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER 118 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence 455566655545678999 999999999999887 44 689999999999999996521 1
Q ss_pred ---------------ce-------------EEEeeccCCCC-----CCCCccEEEecccCcCC---------CCHHHHHH
Q 023974 161 ---------------VK-------------CWQGELIYVPD-----KWGPLDVVFLYFLPAMP---------FPLDQVFE 198 (274)
Q Consensus 161 ---------------v~-------------~~~gDae~LPf-----~~~sFD~V~~~f~l~~~---------~d~~~al~ 198 (274)
++ |.++|+.+... .+++||+|+++..+... .....+++
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~ 198 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 198 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence 56 99999987432 34589999998433322 23458999
Q ss_pred HHHHhcCCCCEEEEE
Q 023974 199 TLANRCSPGARVVIS 213 (274)
Q Consensus 199 el~RvLKPGGrlvIs 213 (274)
++.++|||||+++|.
T Consensus 199 ~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 199 SLASALPAHAVIAVT 213 (250)
T ss_dssp HHHHHSCTTCEEEEE
T ss_pred HHHHhcCCCcEEEEe
Confidence 999999999999995
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=128.83 Aligned_cols=129 Identities=8% Similarity=0.055 Sum_probs=100.7
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
.+.++++|| ||||||.++..+++.++ .+|+|+|++++|++.|+++. ..+++++||+.+.+..++.||+|+++
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence 346788999 99999999999999887 78999999999999999762 24899999998887665689998754
Q ss_pred -ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE---ecC
Q 023974 185 -FLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV---DES 260 (274)
Q Consensus 185 -f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~---d~~ 260 (274)
.+=. -..+.+.+..+.|+++|+|+++ |.. ..+++++++.+.||.++... ++.
T Consensus 98 GmGg~---lI~~IL~~~~~~l~~~~~lIlq-p~~--------------------~~~~lr~~L~~~Gf~i~~E~lv~e~~ 153 (230)
T 3lec_A 98 GMGGR---LIADILNNDIDKLQHVKTLVLQ-PNN--------------------REDDLRKWLAANDFEIVAEDILTEND 153 (230)
T ss_dssp EECHH---HHHHHHHHTGGGGTTCCEEEEE-ESS--------------------CHHHHHHHHHHTTEEEEEEEEEEC--
T ss_pred CCchH---HHHHHHHHHHHHhCcCCEEEEE-CCC--------------------ChHHHHHHHHHCCCEEEEEEEEEECC
Confidence 2211 2467888889999999999997 321 14689999999999877644 344
Q ss_pred CeEEE
Q 023974 261 GFYLV 265 (274)
Q Consensus 261 ~~yl~ 265 (274)
.+|-+
T Consensus 154 ~~Yei 158 (230)
T 3lec_A 154 KRYEI 158 (230)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 45533
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=138.44 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
+.+.+++.+...++.+|| ||||||.++..+++.+..+|+|||+|+ |++.|+++. ++++++++|++++++. +
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~ 115 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-E 115 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-S
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-C
Confidence 445667777777889999 999999999999887546999999996 999998763 4689999999999865 6
Q ss_pred CccEEEecccCc-CC-CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPA-MP-FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~-~~-~d~~~al~el~RvLKPGGrlvIs 213 (274)
+||+|++..... +. .+..+++.++.|+|||||++++.
T Consensus 116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 899999984433 32 35568899999999999999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-15 Score=137.81 Aligned_cols=105 Identities=10% Similarity=0.108 Sum_probs=83.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-CC------CceEE--EeeccCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-YD------TVKCW--QGELIYVPD 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-~~------~v~~~--~gDae~LPf 173 (274)
++..+++...+.++.+|| ||||||.++..++++ ++|+|||+|+ |+..++++ .+ ++.++ ++|++++|
T Consensus 62 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 137 (265)
T 2oxt_A 62 KLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP- 137 (265)
T ss_dssp HHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-
T ss_pred HHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-
Confidence 455566666677899999 999999999999877 5899999999 86554433 22 68999 99999987
Q ss_pred CCCCccEEEecccCcCCCCH----H---HHHHHHHHhcCCCC--EEEEEc
Q 023974 174 KWGPLDVVFLYFLPAMPFPL----D---QVFETLANRCSPGA--RVVISH 214 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~----~---~al~el~RvLKPGG--rlvIs~ 214 (274)
+++||+|+|.+. +...++ . ++++++.|+||||| .|+|..
T Consensus 138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 689999999876 433332 1 38999999999999 999853
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=137.29 Aligned_cols=106 Identities=14% Similarity=0.084 Sum_probs=86.4
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCcc
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLD 179 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD 179 (274)
..+.+.++++|| +|||+|..+..+++.. . ++|+|+|+|+.|++.++++ .+++.++++|+.+++ +.+++||
T Consensus 253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD 332 (450)
T 2yxl_A 253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVAD 332 (450)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEE
T ss_pred HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCC
Confidence 345788999999 9999999999998864 3 6999999999999999876 347899999999987 5558899
Q ss_pred EEEec-----c-cCcCCCCH----------------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 180 VVFLY-----F-LPAMPFPL----------------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 180 ~V~~~-----f-~l~~~~d~----------------~~al~el~RvLKPGGrlvIs~~ 215 (274)
+|++. . .++..+|. .++++++.++|||||+|++++.
T Consensus 333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc 390 (450)
T 2yxl_A 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC 390 (450)
T ss_dssp EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99962 2 23433333 5789999999999999998643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-15 Score=134.68 Aligned_cols=108 Identities=13% Similarity=0.220 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
+...++++++.+.+.++.+|| ||||||.++..|++.+. +|+|||+|+.|++.|+++. ++++++++|+.++++
T Consensus 13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 345788999999999999999 99999999999998874 9999999999999999874 368999999999876
Q ss_pred CCCCccEEEecccCcCCCCHH-HHH--------------HHHH--HhcCCCCEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLD-QVF--------------ETLA--NRCSPGARVV 211 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~-~al--------------~el~--RvLKPGGrlv 211 (274)
. +||+|+++..+++..+.- ..+ +|++ ++|||||+++
T Consensus 92 ~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 P--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp C--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred h--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 4 799999986555532221 222 3443 7999999874
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=125.73 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=100.1
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeecc-CCCCCCCCccEEEec
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELI-YVPDKWGPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae-~LPf~~~sFD~V~~~ 184 (274)
+.++++|| ||||||.++..++..++ .+|+|+|+++++++.|+++. . +++++++|+. .++. .+.||+|+++
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEc
Confidence 46788999 99999999999999887 79999999999999999762 2 4899999984 4553 2379999865
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE--ecCCe
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV--DESGF 262 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~--d~~~~ 262 (274)
-.-.. -..+.+.+..+.|+|||+|+++.-. ..+.++++|.+.||.++... .+++.
T Consensus 92 G~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~---------------------~~~~vr~~L~~~Gf~i~~e~lv~e~~~ 148 (225)
T 3kr9_A 92 GMGGR--LIARILEEGLGKLANVERLILQPNN---------------------REDDLRIWLQDHGFQIVAESILEEAGK 148 (225)
T ss_dssp EECHH--HHHHHHHHTGGGCTTCCEEEEEESS---------------------CHHHHHHHHHHTTEEEEEEEEEEETTE
T ss_pred CCChH--HHHHHHHHHHHHhCCCCEEEEECCC---------------------CHHHHHHHHHHCCCEEEEEEEEEECCE
Confidence 21111 1468899999999999999997321 13688899999999887653 44555
Q ss_pred EEEEEE
Q 023974 263 YLVVLK 268 (274)
Q Consensus 263 yl~v~~ 268 (274)
|+-|+.
T Consensus 149 ~Yeii~ 154 (225)
T 3kr9_A 149 FYEILV 154 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444444
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=120.48 Aligned_cols=96 Identities=6% Similarity=-0.093 Sum_probs=77.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
...++.+|| +|||||.++..+++.+..+|+|||+|+.|++.|+++.++++++++|++++| ++||+|+++..+++..
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~ 124 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVV 124 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC----
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhcc
Confidence 456788999 999999999999887436799999999999999999889999999999986 7899999997666654
Q ss_pred C--HHHHHHHHHHhcCCCCEEEEE
Q 023974 192 P--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 192 d--~~~al~el~RvLKPGGrlvIs 213 (274)
+ ..+.++++.++| |+.+++.
T Consensus 125 ~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 125 KHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEE
T ss_pred CchhHHHHHHHHHhc--CcEEEEE
Confidence 3 347899999999 5544444
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=127.81 Aligned_cols=132 Identities=9% Similarity=0.094 Sum_probs=101.5
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEec
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
.+.++++|| ||||+|.++..|++.++ .+|+|+|+++.+++.|+++. . .+++++||+.+....+++||+|+++
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence 356788999 99999999999999887 78999999999999999862 2 4899999998877655579998864
Q ss_pred -ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE--ecCC
Q 023974 185 -FLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV--DESG 261 (274)
Q Consensus 185 -f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~--d~~~ 261 (274)
.+=. -..+.+.+..+.|+++|+|+++.-. ..+.++++|.+.||.++... .+++
T Consensus 98 gmGg~---lI~~IL~~~~~~L~~~~~lIlq~~~---------------------~~~~lr~~L~~~Gf~i~~E~lv~e~~ 153 (244)
T 3gnl_A 98 GMGGT---LIRTILEEGAAKLAGVTKLILQPNI---------------------AAWQLREWSEQNNWLITSEAILREDN 153 (244)
T ss_dssp EECHH---HHHHHHHHTGGGGTTCCEEEEEESS---------------------CHHHHHHHHHHHTEEEEEEEEEEETT
T ss_pred CCchH---HHHHHHHHHHHHhCCCCEEEEEcCC---------------------ChHHHHHHHHHCCCEEEEEEEEEECC
Confidence 2211 2467888899999999999997321 14688899999999875433 3444
Q ss_pred eEEEEEE
Q 023974 262 FYLVVLK 268 (274)
Q Consensus 262 ~yl~v~~ 268 (274)
.|+-|+.
T Consensus 154 k~Yeii~ 160 (244)
T 3gnl_A 154 KVYEIMV 160 (244)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4444444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=121.51 Aligned_cols=107 Identities=11% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC-------
Q 023974 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK------- 174 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~------- 174 (274)
++.++++... +.++.+|| +|||||.++..+++++ ++|+|||+++. ...++++++++|+.+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~------~~~~~v~~~~~D~~~~~~~~~~~~~~ 84 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM------EEIAGVRFIRCDIFKETIFDDIDRAL 84 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC------CCCTTCEEEECCTTSSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc------ccCCCeEEEEccccCHHHHHHHHHHh
Confidence 5556666554 47889999 9999999999998874 69999999974 2356899999999887621
Q ss_pred ----CCCccEEEecccCcCCC----C-------HHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 175 ----WGPLDVVFLYFLPAMPF----P-------LDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 175 ----~~sFD~V~~~f~l~~~~----d-------~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.++||+|++...+.... | .+.+++++.++|||||+|++....+
T Consensus 85 ~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 85 REEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp HHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 14999999975443221 1 3578999999999999999865443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-15 Score=127.43 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
.....+..++. ..++.+|| ||||||..+..+++..+ ++|+|+|+|++|++.|+++. .+++++++|+.+
T Consensus 51 ~~~~~l~~l~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 127 (225)
T 3tr6_A 51 EQAQLLALLVK---LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127 (225)
T ss_dssp HHHHHHHHHHH---HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred HHHHHHHHHHH---hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence 33344554443 33567999 99999999999988632 79999999999999999863 248999999965
Q ss_pred C-CCCC-----CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 171 V-PDKW-----GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 L-Pf~~-----~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
. |... ++||+|++... ..+...+++++.++|||||+|++.+..
T Consensus 128 ~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 128 TLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp HHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 3 3222 79999997653 346788999999999999999997654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-14 Score=131.61 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=98.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
....++... ..++.+|| +|||||.++..++..++ ++|+|+|+|+.|++.|+++. +++++.++|+.++|+.+
T Consensus 206 la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~ 284 (373)
T 3tm4_A 206 IANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV 284 (373)
T ss_dssp HHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred HHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence 344556666 78889999 99999999999988876 69999999999999999873 36899999999999988
Q ss_pred CCccEEEec--ccCcCCC-----CH-HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 176 GPLDVVFLY--FLPAMPF-----PL-DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 176 ~sFD~V~~~--f~l~~~~-----d~-~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
++||+|+++ |+.+.-. +. .++++++.|+| ||++++..+ +.+.+.+.++
T Consensus 285 ~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~----------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 285 DSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT----------------------EKKAIEEAIA 340 (373)
T ss_dssp SCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES----------------------CHHHHHHHHH
T ss_pred CCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC----------------------CHHHHHHHHH
Confidence 999999998 4444321 11 57788999999 566655422 2456777888
Q ss_pred hCCCcEeEE
Q 023974 248 NHCFQIDNF 256 (274)
Q Consensus 248 ~aGF~~v~~ 256 (274)
+.||+....
T Consensus 341 ~~G~~~~~~ 349 (373)
T 3tm4_A 341 ENGFEIIHH 349 (373)
T ss_dssp HTTEEEEEE
T ss_pred HcCCEEEEE
Confidence 999976653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=124.54 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=81.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC-CCCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV-PDKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L-Pf~~~sFD~V~~~f 185 (274)
++.+|| ||||+|..+..+++..+ ++|+++|+|++|++.|+++. ++++++++|+.++ |..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 567999 99999999999988642 79999999999999999764 2488999999764 66567 99999874
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
. ..+...+++++.|+|||||++++.+.
T Consensus 135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 135 D---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 3 45778999999999999999999654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=113.71 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=79.2
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEe
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
+......++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++.. +++++++|++++| ++||+|++
T Consensus 42 ~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~ 118 (207)
T 1wy7_A 42 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIM 118 (207)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEE
T ss_pred HHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEE
Confidence 3334566788999 99999999999988755689999999999999998864 6899999999986 48999999
Q ss_pred cccCcCC--CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMP--FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~--~d~~~al~el~RvLKPGGrlvIs 213 (274)
+..++.. ....+.++++.++| || +++.
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~-~~~~ 147 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DV-VYSI 147 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SE-EEEE
T ss_pred cCCCccccCCchHHHHHHHHHhc--Cc-EEEE
Confidence 8554443 23457899999999 55 4444
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.6e-15 Score=131.22 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV 171 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L 171 (274)
..+.+..++.. .++.+|| ||||||..+..+++..+ ++|+|||++++|++.|+++. +++++++||+.++
T Consensus 48 ~~~~l~~l~~~---~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~ 124 (242)
T 3r3h_A 48 QAQFMQMLIRL---TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT 124 (242)
T ss_dssp HHHHHHHHHHH---HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHhh---cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 33344444433 3567999 99999999999988642 79999999999999998763 3689999999775
Q ss_pred C-CC-----CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 172 P-DK-----WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 172 P-f~-----~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
. .. +++||+|++... ..+....++++.|+|||||.|++.+..
T Consensus 125 l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 125 LHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp HHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred HHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 3 22 589999998754 345678999999999999999996543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=120.72 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=77.5
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhC-C---------CcEEEEeCcHHHHHHHHHhCCCceEE-EeeccCCC--------
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESS-P---------SLLLVVHDSLFVLAGIKEKYDTVKCW-QGELIYVP-------- 172 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~-~---------~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae~LP-------- 172 (274)
.+.++.+|| +|||||.++..+++.. + .+|+|+|+|+.+ ..++++++ ++|+.+.+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (196)
T 2nyu_A 19 ILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEV 92 (196)
T ss_dssp CCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHh
Confidence 357889999 9999999999998873 2 689999999842 24678999 99987754
Q ss_pred CCCCCccEEEecccCcC----CCCH-------HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKWGPLDVVFLYFLPAM----PFPL-------DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~----~~d~-------~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+.+++||+|++...++. ..|. +.+++++.|+|||||+|++....
T Consensus 93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34578999999765443 2233 48899999999999999997544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-14 Score=132.33 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=82.4
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCCCCC----CCCccEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYVPDK----WGPLDVV 181 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~LPf~----~~sFD~V 181 (274)
..++.+|| +|||||.++..+++.+. +|+|||+|+.|++.|+++. . +++++++|+.++... +++||+|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 35678999 99999999999988775 9999999999999999863 3 389999999886422 6799999
Q ss_pred Eec---ccC-------cCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 182 FLY---FLP-------AMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 182 ~~~---f~l-------~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
++. |.. +...+..++++++.++|||||.|++....
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 985 322 22345678999999999999998886443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=127.97 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=85.6
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccEEEec
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
..+.++++|| +|||||.++..+++..+ ++|+|||+|++|++.|+++ .+++.++++|++++|. +++||+|++.
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMG 193 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEEC
Confidence 4577889999 99999999999998864 7999999999999999975 3578999999999854 7899999987
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
... +..+++.++.++|||||+++++..
T Consensus 194 ~p~----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 194 YVH----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp CCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred Ccc----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 543 677899999999999999999643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=132.09 Aligned_cols=95 Identities=8% Similarity=0.001 Sum_probs=80.1
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC-CCC-CCCCccEEEec
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY-VPD-KWGPLDVVFLY 184 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~-LPf-~~~sFD~V~~~ 184 (274)
..++.+|| +| |||.++..++..++ .+|+|+|+|++|++.|+++. .+++++++|+.+ +|. .+++||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 34678999 99 99999999988877 89999999999999999863 368999999999 885 46799999998
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARV 210 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrl 210 (274)
-.++.. ...++++++.|+|||||++
T Consensus 249 ~p~~~~-~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 249 PPETLE-AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCSSHH-HHHHHHHHHHHTBCSTTCE
T ss_pred CCCchH-HHHHHHHHHHHHcccCCeE
Confidence 433322 3578999999999999965
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-15 Score=141.77 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcC------chHHHHHHHH-hCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSIS------SEEFVDRVVE-SSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcG------TG~l~~~L~~-~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~ 174 (274)
..+++++.+. .++.+|| |||| ||..+..+.+ ..| ++|+|||+|++|. .+.++++|++||++++|+.
T Consensus 205 ~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~ 279 (419)
T 3sso_A 205 HYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFL 279 (419)
T ss_dssp HHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHH
T ss_pred HHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchh
Confidence 4556666554 3457999 9999 6545545544 345 8999999999994 3567899999999999987
Q ss_pred ------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 175 ------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 175 ------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+++||+|++.. .++..+..++|++++|+|||||+++|.+.
T Consensus 280 ~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 280 DRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp HHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred hhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 79999999874 46667889999999999999999999754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=124.32 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=82.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
..+.+|| ||||+|.++..+++..+ .+|++||++++|++.|++.. ++++++.+|+.+ ++..+++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3567999 99999999999988644 79999999999999999865 468999999876 555578999999
Q ss_pred ecccCcCCCC----HHHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LYFLPAMPFP----LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~f~l~~~~d----~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.....+... ..++++++.|+|||||++++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8743322211 2689999999999999999963
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=130.31 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=82.7
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeeccC-CCCCCCCccEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGELIY-VPDKWGPLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDae~-LPf~~~sFD~V 181 (274)
..+.+|| ||||+|.++..+++..+ .+|++||++++|++.|+++. ++++++++|+.+ ++..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4567999 99999999999988754 79999999999999999864 458999999987 56567899999
Q ss_pred EecccCcC---CC--C--HHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAM---PF--P--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~---~~--d--~~~al~el~RvLKPGGrlvIs 213 (274)
++....++ .+ . ..++++++.|+|||||++++.
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 99865544 11 1 368999999999999999995
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=124.92 Aligned_cols=101 Identities=10% Similarity=0.102 Sum_probs=82.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccC-CC----------
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIY-VP---------- 172 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~-LP---------- 172 (274)
...++.+|| ||||+|.++..+++..+ ++|+++|++++|++.|+++. . .++++++|+.+ +|
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 345678999 99999999999988743 79999999999999999873 2 38999999876 33
Q ss_pred ----CCC--CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 ----DKW--GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 ----f~~--~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|.+ ++||+|++.+.. .+...+++++.++|||||++++.+..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 799999988543 45678999999999999999997543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=131.52 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=82.5
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCC-C-CCCCCc
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYV-P-DKWGPL 178 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~L-P-f~~~sF 178 (274)
.....+.+|| ||||+|.++..+++..+ .+|++||+|++|++.|+++. ++++++++|+.+. + ..+++|
T Consensus 116 ~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 116 CSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp TTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred hhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCc
Confidence 3445668999 99999999999988755 79999999999999999875 4689999999774 3 346899
Q ss_pred cEEEecccC-cCCCC---HHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLP-AMPFP---LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l-~~~~d---~~~al~el~RvLKPGGrlvIs 213 (274)
|+|++...- ....+ ..++++++.|+|||||+|++.
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999987431 11111 368999999999999999995
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=127.89 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=88.4
Q ss_pred hCCCCCCCeEE-EEc------CchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhCCCceE-EEeeccCCCCCCCCccE
Q 023974 111 AGEIDESSKVL-VSI------SSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKYDTVKC-WQGELIYVPDKWGPLDV 180 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc------GTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~~~v~~-~~gDae~LPf~~~sFD~ 180 (274)
.+.+.++.+|| +|| |+|. ..+++. ++ ++|+|||+|+. .+++++ ++||+.++++. ++||+
T Consensus 58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~~v~~~i~gD~~~~~~~-~~fD~ 126 (290)
T 2xyq_A 58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VSDADSTLIGDCATVHTA-NKWDL 126 (290)
T ss_dssp CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BCSSSEEEESCGGGCCCS-SCEEE
T ss_pred hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CCCCEEEEECccccCCcc-CcccE
Confidence 45788999999 999 5577 344444 33 79999999998 367999 99999999874 78999
Q ss_pred EEecccCcC-----C------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhC
Q 023974 181 VFLYFLPAM-----P------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 181 V~~~f~l~~-----~------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~a 249 (274)
|+++....+ . ...+++++++.|+|||||+|++..... ...+++.+++++.
T Consensus 127 Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~-------------------~~~~~l~~~l~~~ 187 (290)
T 2xyq_A 127 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH-------------------SWNADLYKLMGHF 187 (290)
T ss_dssp EEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS-------------------SCCHHHHHHHTTE
T ss_pred EEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------------CCHHHHHHHHHHc
Confidence 999754322 1 113489999999999999999964332 1124788889999
Q ss_pred CCcEeEEE
Q 023974 250 CFQIDNFV 257 (274)
Q Consensus 250 GF~~v~~~ 257 (274)
||..+...
T Consensus 188 GF~~v~~~ 195 (290)
T 2xyq_A 188 SWWTAFVT 195 (290)
T ss_dssp EEEEEEEE
T ss_pred CCcEEEEE
Confidence 99776664
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=130.18 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCcc
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD 179 (274)
+....+.+|| ||||+|.++..+++..+ .+|++||++++|++.|+++. ++++++++|+.+ ++..+++||
T Consensus 91 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 91 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hhCCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCce
Confidence 3345668999 99999999999988765 79999999999999999864 468999999977 566678999
Q ss_pred EEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 180 VVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 180 ~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+|++.....+.+ ...++++++.|+|||||++++..
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 999875432211 23578999999999999999953
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=125.79 Aligned_cols=111 Identities=9% Similarity=0.040 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
...+.+..++.. .++.+|| ||||||..+..+++..+ ++|+++|+|++|++.|+++. +++++++||+.+
T Consensus 66 ~~~~ll~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 142 (247)
T 1sui_A 66 DEGQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142 (247)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 333455555543 3567999 99999999999988743 79999999999999999763 258899999976
Q ss_pred C-CCC------CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 171 V-PDK------WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 L-Pf~------~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
. |.. +++||+|++... ..+....++++.++|||||+|++.+..
T Consensus 143 ~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 143 VLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp HHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred HHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 3 432 689999998754 346789999999999999999986543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-14 Score=136.29 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=84.4
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC-CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP-f~~~sFD~ 180 (274)
..+.+.++++|| +|||||..+..+++.. . ++|+|+|+|+.|++.++++ .. +.++++|+.+++ +.+++||+
T Consensus 95 ~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEE
T ss_pred HhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCE
Confidence 345778999999 9999999999998874 3 7999999999999999976 34 889999999987 35789999
Q ss_pred EEec-----cc-CcCCCCH----------------HHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VFLY-----FL-PAMPFPL----------------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~-----f~-l~~~~d~----------------~~al~el~RvLKPGGrlvIs~ 214 (274)
|++. .+ ++..++. .++++++.++|||||+|+.++
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT 229 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST 229 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9963 11 3322232 679999999999999999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=133.34 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=87.2
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC--CCCCCcc
Q 023974 108 IISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP--DKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP--f~~~sFD 179 (274)
+...+...++.+|| +|||+|..+..+++..+ ++|+|+|+|+.|++.++++.. ++.++++|+.+++ +.+++||
T Consensus 238 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 34445778999999 99999999999998876 799999999999999997632 5789999999987 5668999
Q ss_pred EEEec-----c-cCcCCCCH----------------HHHHHHHHHhcCCCCEEEEEc
Q 023974 180 VVFLY-----F-LPAMPFPL----------------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 180 ~V~~~-----f-~l~~~~d~----------------~~al~el~RvLKPGGrlvIs~ 214 (274)
+|++. . .++..++. .++++++.+.|||||+|++++
T Consensus 318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99963 2 23333332 478999999999999999965
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-14 Score=133.47 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=82.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeC----cHHHHHHHH-HhC--CCceEEEe-eccCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHD----SLFVLAGIK-EKY--DTVKCWQG-ELIYVPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~----S~~ML~~Ar-~k~--~~v~~~~g-Dae~LPf~ 174 (274)
++..+++...+.++.+|| ||||||.++..++++ ++|+|||+ +++|++.++ ++. +++.++++ |+.++|
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~-- 145 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP-- 145 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--
Confidence 344556554567889999 999999999999887 48999999 676664332 222 56899999 998886
Q ss_pred CCCccEEEecccCc---CCCCHH---HHHHHHHHhcCCCCEEEEEcCC
Q 023974 175 WGPLDVVFLYFLPA---MPFPLD---QVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 175 ~~sFD~V~~~f~l~---~~~d~~---~al~el~RvLKPGGrlvIs~~~ 216 (274)
+++||+|+|.+.+. +..|.. .+|.++.|+|||||+|++....
T Consensus 146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 47999999986653 222332 5899999999999999995443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-14 Score=127.71 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCcc
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD 179 (274)
+...++.+|| ||||+|.++..+++..+ .+|++||++++|++.|+++. ++++++++|+.+ ++..+++||
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence 3445668999 99999999999987755 79999999999999999875 357899999977 344478999
Q ss_pred EEEecccCcCCC--CH--HHHHHHHHHhcCCCCEEEEEc
Q 023974 180 VVFLYFLPAMPF--PL--DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~--~~al~el~RvLKPGGrlvIs~ 214 (274)
+|++.....+.. +. .++++++.|+|||||++++..
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 999864322211 22 689999999999999999963
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-14 Score=127.14 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=85.1
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC----CCCCc
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD----KWGPL 178 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf----~~~sF 178 (274)
.+.+.++.+|| +|||||..+..+++.. . ++|+|+|+|+.|++.++++ .++++++++|+.+++. .+++|
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCE
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccC
Confidence 34678899999 9999999999998853 3 7999999999999999976 3578999999998875 36899
Q ss_pred cEEEecc---cCc---------------CCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 179 DVVFLYF---LPA---------------MPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f---~l~---------------~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
|+|++.. +.. ......++++++.++|||||+|++++
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 9999761 111 11356789999999999999999964
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=126.95 Aligned_cols=141 Identities=13% Similarity=-0.005 Sum_probs=101.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
.+.++|| +|||||-++..++...| .+|+|+|+|++||+.|+++.. ..++..+|.... ...++||+|.+.-.+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 5578999 99999999999988876 899999999999999998742 223444666554 3568899999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCC---ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQ---GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLV 265 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~---gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~ 265 (274)
.+.+.+.++.++++.|||||.+|-.... ||.. . ....+ .+.+.+.+.+-++.+.+.+-.+.++++
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~--g---------m~~~Y-~~~~~~~~~~~~~~~~~~~~~nEl~y~ 194 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEK--G---------MEENY-QLWFESFTKGWIKILDSKVIGNELVYI 194 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CT--T---------CCCCH-HHHHHHHTTTTSCEEEEEEETTEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCc--c---------hhhhH-HHHHHHhccCcceeeeeeeeCceEEEE
Confidence 8888889999999999999988765321 1210 0 01111 356667776655666666666665554
Q ss_pred EEE
Q 023974 266 VLK 268 (274)
Q Consensus 266 v~~ 268 (274)
|-+
T Consensus 195 ~~~ 197 (200)
T 3fzg_A 195 TSG 197 (200)
T ss_dssp ECC
T ss_pred Eec
Confidence 443
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-14 Score=127.87 Aligned_cols=100 Identities=8% Similarity=0.034 Sum_probs=80.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
..+.+|| ||||+|.++..+++..+ .+|++||+|++|++.|+++. ++++++++|+.+ ++..+++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3457999 99999999999988744 79999999999999999875 468999999877 565678999999
Q ss_pred ecccCcCCC-----CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LYFLPAMPF-----PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~f~l~~~~-----d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+...-.+.. ...++++++.++|||||++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 864322111 22689999999999999999963
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=137.70 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=85.9
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~s 177 (274)
.+.+++.+...++.+|| ||||||.++..+++.+..+|+|||+|+ |++.|+++. ++++++++|++++++. ++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~ 224 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ 224 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CC
Confidence 34566666666788999 999999999988875446999999999 999998752 4689999999998764 68
Q ss_pred ccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs 213 (274)
||+|+++....+. ++..+.+.++.|+|||||++++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999997443322 34457888999999999999863
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-14 Score=123.02 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
...+.+..++. ..++.+|| ||||+|..+..+++..+ ++|+++|+|++|++.|+++. ++++++++|+.+
T Consensus 59 ~~~~~l~~l~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 135 (232)
T 3cbg_A 59 EQAQFLGLLIS---LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135 (232)
T ss_dssp HHHHHHHHHHH---HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHH---hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 33334444443 23567999 99999999999988643 69999999999999999764 358999999754
Q ss_pred ----CCCCC--CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 171 ----VPDKW--GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 ----LPf~~--~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+++.+ ++||+|++... ..+....++++.++|||||+|++.+..
T Consensus 136 ~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 136 TLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 44444 89999998754 346788999999999999999996543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=125.09 Aligned_cols=111 Identities=8% Similarity=0.054 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~ 174 (274)
..+..+++.+...++.+|| +|||||.++..+++. + .+|+|+|+|++|++.|+++. . +++|+++|+.+. +.
T Consensus 110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~ 187 (284)
T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK 187 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG
T ss_pred HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc
Confidence 3555555555444667999 999999999999888 6 79999999999999999763 2 389999999873 22
Q ss_pred CCCc---cEEEec--ccC---------cCC--------CCHHHHHHHHH-HhcCCCCEEEEEcCC
Q 023974 175 WGPL---DVVFLY--FLP---------AMP--------FPLDQVFETLA-NRCSPGARVVISHPQ 216 (274)
Q Consensus 175 ~~sF---D~V~~~--f~l---------~~~--------~d~~~al~el~-RvLKPGGrlvIs~~~ 216 (274)
++| |+|+++ |.. .+. .|...+++++. +.|||||++++.+..
T Consensus 188 -~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 188 -EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp -GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred -cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 579 999997 211 011 12237899999 999999999997543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-14 Score=129.26 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=81.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
.++.+|| ||||+|.++..+++..+ .+|++||+|++|++.|+++.+ +++++++|+.+ ++..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4567999 99999999999987644 799999999999999998753 47899999877 444568999999
Q ss_pred ecccCcCC--CCH--HHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LYFLPAMP--FPL--DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~f~l~~~--~d~--~~al~el~RvLKPGGrlvIs~ 214 (274)
+...-.+. .+. +++++++.++|||||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 87432111 111 689999999999999999953
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-14 Score=126.21 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---------------CCceEEEeeccC-CCCCCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---------------DTVKCWQGELIY-VPDKWGP 177 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---------------~~v~~~~gDae~-LPf~~~s 177 (274)
..+.+|| ||||+|.++..+++.+..+|++||++++|++.|+++. ++++++++|+.+ ++. +++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4567999 9999999999998872279999999999999999875 358899999876 344 689
Q ss_pred ccEEEecccCcCC--CC--HHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMP--FP--LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~--~d--~~~al~el~RvLKPGGrlvIs 213 (274)
||+|++.....+. .. ..++++++.|+|||||++++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999987543221 11 268899999999999999995
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-14 Score=130.52 Aligned_cols=100 Identities=10% Similarity=0.101 Sum_probs=78.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC---------CceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD---------TVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~---------~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
..+.+|| ||||+|.++..+++..+ .+|++||++++|++.|+++.+ +++++++|+.+ ++..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4557999 99999999999988755 799999999999999998753 47899999977 455678999999
Q ss_pred ecccCcCCCCH----HHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LYFLPAMPFPL----DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~f~l~~~~d~----~~al~el~RvLKPGGrlvIs~ 214 (274)
+...-...++. .++++++.|+|||||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 87532221111 688999999999999999964
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=134.50 Aligned_cols=106 Identities=9% Similarity=-0.032 Sum_probs=83.7
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC-CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP-DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP-f~~~sFD~ 180 (274)
..+.+.++++|| +|||+|..+..+++. .. ++|+|+|+|+.|++.++++ ..++.++++|+.+++ ..+++||+
T Consensus 99 ~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 99 TAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEE
T ss_pred HHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCE
Confidence 345678999999 999999999998876 33 7999999999999999876 356889999999886 34689999
Q ss_pred EEecc---c---CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 181 VFLYF---L---PAMPFP----------------LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~f---~---l~~~~d----------------~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|++.. + ++.-++ ..+++.++.++|||||+|+.++.
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99742 1 222111 12779999999999999998643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-14 Score=120.46 Aligned_cols=110 Identities=9% Similarity=0.009 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV 171 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L 171 (274)
..+.+..++. ..++.+|| ||||+|..+..+++..+ ++|+++|++++|++.|+++. .+++++++|+.+.
T Consensus 57 ~~~~l~~l~~---~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 57 QAQLLANLAR---LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 133 (229)
T ss_dssp HHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHH---hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH
Confidence 3334444443 34668999 99999999999988632 79999999999999999763 4689999998654
Q ss_pred -C-C--CC--CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 172 -P-D--KW--GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 172 -P-f--~~--~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+ + .. ++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 134 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 134 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 2 1 11 78999998754 346678999999999999999996543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=127.69 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=79.7
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC-----CceEEEeeccCC--CCCCCCccEEEecccCc
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD-----TVKCWQGELIYV--PDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDae~L--Pf~~~sFD~V~~~f~l~ 188 (274)
.+|| ||||+|.++..+++..+ .+|++||++++|++.||+.++ +++++++|+.+. .+.+++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 3999 99999999999998665 799999999999999999863 589999999875 23468999999874322
Q ss_pred C-CC---CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 189 M-PF---PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 189 ~-~~---d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+ .. ...+++++++|+|||||.|++..
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 11 12689999999999999999953
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-13 Score=129.11 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=106.3
Q ss_pred hCCCC--CCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC-CCCCcc
Q 023974 111 AGEID--ESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD-KWGPLD 179 (274)
Q Consensus 111 ~~~~~--~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf-~~~sFD 179 (274)
.+.+. ++++|| +|||+|..+..+++.. + +.|+|+|+|+.|++.++++ ..++.++++|+.+++. .+++||
T Consensus 110 ~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD 189 (479)
T 2frx_A 110 ALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189 (479)
T ss_dssp HHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEE
T ss_pred HhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCC
Confidence 34556 899999 9999999999998873 3 7999999999999999976 3578999999999875 568999
Q ss_pred EEEec-----cc-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEcC-----CChhHHHHHHhhCccc-
Q 023974 180 VVFLY-----FL-PAMPFP----------------LDQVFETLANRCSPGARVVISHP-----QGREALQKQRKQFPDV- 231 (274)
Q Consensus 180 ~V~~~-----f~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~~-----~gr~~l~~~~~~~~~~- 231 (274)
+|++. .+ ++..++ ..++++++.++|||||+|++++. .+...+..+-..+.+.
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~~~~ 269 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAV 269 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHSTTTE
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCCCce
Confidence 99973 11 222222 24789999999999999999643 2223333333333321
Q ss_pred ccc----cCCCHHHHHHHHHhCCCc-EeEEE-ecCCeEEEEEEecC
Q 023974 232 IVS----DLPDQMTLQKAAGNHCFQ-IDNFV-DESGFYLVVLKFSK 271 (274)
Q Consensus 232 si~----~fps~~eL~~ll~~aGF~-~v~~~-d~~~~yl~v~~~~~ 271 (274)
... .++.. ...+...|+. +.... +.++||+++++|..
T Consensus 270 ~~~~~~~~~~~~---~~~~~~~g~~r~~P~~~~~dGfF~A~l~k~~ 312 (479)
T 2frx_A 270 EFLPLGDLFPGA---NKALTEEGFLHVFPQIYDCEGFFVARLRKTQ 312 (479)
T ss_dssp EECCCTTSSTTG---GGGBCTTSCEEECTTTTTSCCEEEEEEEECS
T ss_pred eccccccccccc---ccccccCCeEEECCCCCCcCccEEEEEEEcC
Confidence 111 12211 1112235652 21122 34789999999865
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=123.92 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=78.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccCCCCCCCCccEEEe
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~LPf~~~sFD~V~~ 183 (274)
...+.+|| ||||+|.++..+++.+ .+|++||++++|++.|+++. ++++++.+|+.+.+ ++||+|++
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 34557999 9999999999888775 79999999999999999865 35789999998875 88999998
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.. .|+..+++++.|+|||||.+++.
T Consensus 146 d~-----~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 146 LQ-----EPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp SS-----CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred CC-----CChHHHHHHHHHhcCCCcEEEEE
Confidence 62 46677999999999999999995
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=121.41 Aligned_cols=110 Identities=8% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC-
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW- 175 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~- 175 (274)
+..+.+++++.+++.++++|| ||||||.++..|++++ .+|+|||+|++|++.|+++. ++++++++|++++|+.+
T Consensus 15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence 345888999999999999999 9999999999999887 59999999999999999886 57899999999999874
Q ss_pred CCccEEEecccCcC-----------CCCHHHHH----HHHHHhcCCCCEEEE
Q 023974 176 GPLDVVFLYFLPAM-----------PFPLDQVF----ETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~-----------~~d~~~al----~el~RvLKPGGrlvI 212 (274)
..| .|+++.-.+. ......++ +.+.|+|+|||++.+
T Consensus 94 ~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v 144 (244)
T 1qam_A 94 QSY-KIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL 144 (244)
T ss_dssp CCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred CCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence 456 4555532221 11223333 336777888876655
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=126.28 Aligned_cols=101 Identities=11% Similarity=0.006 Sum_probs=78.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CC--CceEEEeeccC-CCC---CCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YD--TVKCWQGELIY-VPD---KWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~--~v~~~~gDae~-LPf---~~~sFD~V~ 182 (274)
.++.+|| +|||||.++..++..+..+|+|||+|++|++.|+++ .. +++|+++|+.+ ++. ..++||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5778999 999999999999876546899999999999999976 23 78999999977 332 256899999
Q ss_pred ec---ccC--cCCCC----HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 183 LY---FLP--AMPFP----LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ~~---f~l--~~~~d----~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+. +.. ....+ ..++++++.++|||||.|+++..
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85 211 23333 34466777999999999999753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.8e-13 Score=117.36 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~ 170 (274)
...+.+..++.. .++.+|| ||||+|..+..+++..+ ++|+++|++++|++.|+++. +++++++||+.+
T Consensus 57 ~~~~~l~~l~~~---~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~ 133 (237)
T 3c3y_A 57 LAGQLMSFVLKL---VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133 (237)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred HHHHHHHHHHHh---hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 333455555543 3567999 99999999999988733 79999999999999999763 248899999976
Q ss_pred C-CC------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 171 V-PD------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 171 L-Pf------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
. |. .+++||+|++... ..+....++++.++|||||.+++.+.
T Consensus 134 ~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 134 ALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp HHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred HHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 4 32 2589999998743 34567899999999999999998654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=128.22 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=80.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----C-CCceEEEeeccCCCCCCCCccEEEec---
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----Y-DTVKCWQGELIYVPDKWGPLDVVFLY--- 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~-~~v~~~~gDae~LPf~~~sFD~V~~~--- 184 (274)
-+|.+|| ||||||.++..+++.|..+|+|||.|+ |++.|++. + ..++++++|++++.++ +.||+|++.
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 4688999 999999998888777767999999996 99999864 2 3489999999998765 789999974
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+.+...+..++....|.|||||+++-
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccccchhhhHHHHHHhhCCCCceECC
Confidence 4555656788999999999999999864
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-13 Score=122.95 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=80.1
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCCCC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf~~ 175 (274)
..+.+.+++.+++.++.+|| ||||+|.++..|++++ .+|+|||+|+.|++.|+++. ++++++++|++++|+
T Consensus 28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~-- 104 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF-- 104 (299)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--
Confidence 34778888888888999999 9999999999998875 59999999999999999863 578999999999886
Q ss_pred CCccEEEecccCcCCCCH-HHHH---------------HHHHHhcCCCC
Q 023974 176 GPLDVVFLYFLPAMPFPL-DQVF---------------ETLANRCSPGA 208 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~-~~al---------------~el~RvLKPGG 208 (274)
++||+|+++...++..+. ...+ +...|+++|+|
T Consensus 105 ~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 105 PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 489999998655543211 1333 34678899988
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-13 Score=134.70 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=84.2
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---C--CceEEEeeccCC--CCCCCCccEEEeccc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---D--TVKCWQGELIYV--PDKWGPLDVVFLYFL 186 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~--~v~~~~gDae~L--Pf~~~sFD~V~~~f~ 186 (274)
..+-||| ||||+|.++..|++.| ..|+|||+|+.||++|+... + +++|.++|++++ ++.+++||+|+|.-.
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~g-a~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 3456999 9999999999999988 49999999999999999642 2 589999999998 567889999999988
Q ss_pred CcCCCCHHH--HHHHHHHhcCCCCEEEEEcC
Q 023974 187 PAMPFPLDQ--VFETLANRCSPGARVVISHP 215 (274)
Q Consensus 187 l~~~~d~~~--al~el~RvLKPGGrlvIs~~ 215 (274)
++|++|++. .+..+.+.|+++|+.++...
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~ 174 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILEL 174 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEe
Confidence 999888763 34567888999998887533
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-15 Score=133.00 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC-CCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW-GPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~-~sF 178 (274)
+.+.+++.+++.++.+|| ||||+|.++..|++.+ .+|+|||+|++|++.|+++. ++++++++|+.++|+.+ ++|
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 678888889999999999 9999999999999887 69999999999999998875 46899999999999874 789
Q ss_pred cEEEecccCcC-----------CCCHHHHH----HHHHHhcCCCCEEEEEc
Q 023974 179 DVVFLYFLPAM-----------PFPLDQVF----ETLANRCSPGARVVISH 214 (274)
Q Consensus 179 D~V~~~f~l~~-----------~~d~~~al----~el~RvLKPGGrlvIs~ 214 (274)
.|+++.-... ..+...++ +++.|+|||||+++|..
T Consensus 96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 6666621111 22344455 67999999999998853
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=120.63 Aligned_cols=88 Identities=7% Similarity=0.101 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~ 176 (274)
+..+++++++.+++.++++|| ||||||.++..|++.+ .+|+|||++++|++.|+++. +++++++||+.++++.+.
T Consensus 35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 345889999999999999999 9999999999999886 59999999999999999875 789999999999999888
Q ss_pred CccEEEecccCcC
Q 023974 177 PLDVVFLYFLPAM 189 (274)
Q Consensus 177 sFD~V~~~f~l~~ 189 (274)
+||+|+++.-++.
T Consensus 114 ~fD~Iv~NlPy~i 126 (295)
T 3gru_A 114 DFNKVVANLPYQI 126 (295)
T ss_dssp CCSEEEEECCGGG
T ss_pred CccEEEEeCcccc
Confidence 9999998855443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=120.30 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=82.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----C-C-CceEEEeeccCCCC----CCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----Y-D-TVKCWQGELIYVPD----KWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~-~-~v~~~~gDae~LPf----~~~sFD~V~ 182 (274)
.++.+|| +|||||.++..+++.+..+|+|||+|+.|++.|+++ . + +++++++|+.++.. .+++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5778999 999999999999887546999999999999999976 3 3 68999999988632 257899999
Q ss_pred ecc---c------CcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 183 LYF---L------PAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 183 ~~f---~------l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.- . .....+..+.+.++.+.|||||.++++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 872 1 12224667889999999999999999643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=122.33 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC----CCCCccEEEecc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD----KWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf----~~~sFD~V~~~f 185 (274)
++.+|| +|||||.++..+++. ..+|+|+|+|+.|++.|+++ ..+++++++|++++.. .+++||+|++.-
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 778999 999999999999887 36899999999999999986 3458999999988643 267999999852
Q ss_pred cCcCC----------CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 186 LPAMP----------FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 186 ~l~~~----------~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+. .+..+.+.++.++|||||+|+++..
T Consensus 288 -P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 288 -PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp -CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred -CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 3456788999999999999999743
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-11 Score=115.07 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccC----
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIY---- 170 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~---- 170 (274)
.......+++.+.+.++.+|| +|||+|.++..|++.+ .+|+|+|+|++|++.|+++. ++++|+++|+++
T Consensus 271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK 349 (433)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh
Confidence 334566777777888889999 9999999999998875 59999999999999999763 478999999988
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCC
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHC 250 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aG 250 (274)
+|+.+++||+|+++- ++.. ..++++.+. .++|++.++|+. ....+.+ ++ ..+.+.|
T Consensus 350 ~~~~~~~fD~Vv~dP-Pr~g--~~~~~~~l~-~~~p~~ivyvsc--~p~tlar-----------------d~-~~l~~~G 405 (433)
T 1uwv_A 350 QPWAKNGFDKVLLDP-ARAG--AAGVMQQII-KLEPIRIVYVSC--NPATLAR-----------------DS-EALLKAG 405 (433)
T ss_dssp SGGGTTCCSEEEECC-CTTC--CHHHHHHHH-HHCCSEEEEEES--CHHHHHH-----------------HH-HHHHHTT
T ss_pred hhhhcCCCCEEEECC-CCcc--HHHHHHHHH-hcCCCeEEEEEC--ChHHHHh-----------------hH-HHHHHCC
Confidence 556778999999862 2221 135555554 379999988873 2222211 23 3456678
Q ss_pred CcEeEEEecC
Q 023974 251 FQIDNFVDES 260 (274)
Q Consensus 251 F~~v~~~d~~ 260 (274)
|++.....-+
T Consensus 406 y~~~~~~~~d 415 (433)
T 1uwv_A 406 YTIARLAMLD 415 (433)
T ss_dssp CEEEEEEEEC
T ss_pred cEEEEEEEec
Confidence 9877655433
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=124.06 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=85.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCCCC---
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPD--- 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf--- 173 (274)
..+.++..+ ..++.+|| +|||||.++..+++.+..+|+|+|+|+.|++.|+++. . +++++++|+.+++.
T Consensus 206 ~~~~~~~~~-~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~ 284 (396)
T 2as0_A 206 ENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ 284 (396)
T ss_dssp HHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHH-hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHH
Confidence 334455433 24788999 9999999999998875469999999999999999763 2 68999999987642
Q ss_pred -CCCCccEEEecccCcCC----------CCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 174 -KWGPLDVVFLYFLPAMP----------FPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 174 -~~~sFD~V~~~f~l~~~----------~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+++||+|++.- +++. .+..+.+.++.++|||||+++++..
T Consensus 285 ~~~~~fD~Vi~dp-P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 285 KKGEKFDIVVLDP-PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp HTTCCEEEEEECC-CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hhCCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 267999999862 2211 3467889999999999999988643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=132.35 Aligned_cols=111 Identities=9% Similarity=0.034 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccC-CCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIY-VPDK 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~-LPf~ 174 (274)
+.++.+... .+|.+|| +|||||.++..++..+..+|++||+|+.||+.|+++. .+++++++|+.+ ++..
T Consensus 529 ~~r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~ 606 (703)
T 3v97_A 529 IARRMLGQM--SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA 606 (703)
T ss_dssp HHHHHHHHH--CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC
T ss_pred HHHHHHHHh--cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc
Confidence 444444432 3688999 9999999999988766567999999999999999862 258999999988 5666
Q ss_pred CCCccEEEecc---c--------CcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 175 WGPLDVVFLYF---L--------PAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 175 ~~sFD~V~~~f---~--------l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+++||+|++.- . +....+..+.++++.++|||||+|+++...
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 78999999862 1 222335667899999999999999997543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.4e-12 Score=116.43 Aligned_cols=109 Identities=10% Similarity=0.016 Sum_probs=82.1
Q ss_pred HHHHHhC-CCCCCCeEE-EEcCchHHHHHHHHhCC------CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCC
Q 023974 106 DQIISAG-EIDESSKVL-VSISSEEFVDRVVESSP------SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPD 173 (274)
Q Consensus 106 ~~ll~~~-~~~~~~rVL-vGcGTG~l~~~L~~~~~------~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf 173 (274)
..+++.+ ...++.+|| +|||||.++..+++..+ ..|+|+|+++.|++.|+.+. .++.++++|+... .
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~ 197 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-L 197 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-C
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-c
Confidence 3344433 445678999 99999999988876532 58999999999999999752 2578999998763 3
Q ss_pred CCCCccEEEecccCcCCCCH------------------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 174 KWGPLDVVFLYFLPAMPFPL------------------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~------------------~~al~el~RvLKPGGrlvIs~~ 215 (274)
.++.||+|+++--+.+..+. ...++++.+.|||||++++..+
T Consensus 198 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 198 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 46889999998433322221 1579999999999999998654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=118.00 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=77.0
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC-CCCCCccEEEeccc-
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP-DKWGPLDVVFLYFL- 186 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP-f~~~sFD~V~~~f~- 186 (274)
..+|.+|| +|||||.++..+++.+. .|+|||+|+.|++.|+++.. ..++.++|+.++. ...+.||+|++.--
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred hcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34689999 99999999999988775 59999999999999998632 2467799998753 22344999998721
Q ss_pred CcC--------CCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 187 PAM--------PFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 187 l~~--------~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.. ..+..++++++.++|||||+|++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111 1244678889999999999999753
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-12 Score=113.22 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~ 175 (274)
.+..+.+++++.+++.++++|| ||||||.++..|++++ .+|+|||++++|++.++++. +++++++||+.++++.+
T Consensus 13 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 13 HDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS 91 (255)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGG
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHH
Confidence 3455888999999999999999 9999999999998877 59999999999999999885 57999999999998753
Q ss_pred ----CCccEEEec
Q 023974 176 ----GPLDVVFLY 184 (274)
Q Consensus 176 ----~sFD~V~~~ 184 (274)
++|| |++|
T Consensus 92 ~~~~~~~~-vv~N 103 (255)
T 3tqs_A 92 VKTDKPLR-VVGN 103 (255)
T ss_dssp SCCSSCEE-EEEE
T ss_pred hccCCCeE-EEec
Confidence 5788 6666
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=110.83 Aligned_cols=143 Identities=8% Similarity=0.125 Sum_probs=103.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~~s 177 (274)
+.++.+. +++|++|| +|||+|.++..++..+..+|+|+|+++.+++.++++ .. .++++++|+.+++. .+.
T Consensus 116 r~ri~~~--~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-~~~ 192 (278)
T 3k6r_A 116 RVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENI 192 (278)
T ss_dssp HHHHHHH--CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSC
T ss_pred HHHHHHh--cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-ccC
Confidence 3455544 46889999 999999999888887767999999999999999975 22 47899999999874 588
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
||.|+++.- ....+.+.++.+.|||||.+.+-....... . .--..+.+++.+++.|+++....
T Consensus 193 ~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-------~------~~~~~e~i~~~~~~~g~~v~~~~ 255 (278)
T 3k6r_A 193 ADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-------M------PREPFETFKRITKEYGYDVEKLN 255 (278)
T ss_dssp EEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-------T------TTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeecccc-------c------chhHHHHHHHHHHHcCCcEEEEE
Confidence 999998732 234577888889999999987632211100 0 00124677888899999754322
Q ss_pred e------cCCeEEEEE
Q 023974 258 D------ESGFYLVVL 267 (274)
Q Consensus 258 d------~~~~yl~v~ 267 (274)
. .++.|.+|+
T Consensus 256 ~~~Vk~yaP~~~hvv~ 271 (278)
T 3k6r_A 256 ELKIKRYAPGVWHVVL 271 (278)
T ss_dssp EEEEEEETTTEEEEEE
T ss_pred EEEEEeECcCccEEEE
Confidence 1 356677665
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=108.21 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=77.8
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC---CCcc
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW---GPLD 179 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~---~sFD 179 (274)
.+.+.+|++|| +|||+|..+..+++. ++ ++|+|+|+++.|++.++++ ..+++++++|+.+++..+ ++||
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCC
Confidence 45788999999 999999999998875 44 7999999999999999976 247899999999987543 5899
Q ss_pred EEEec-----cc-Cc-CC----------CCH-------HHHHHHHHHhcCCCCEEEEEc
Q 023974 180 VVFLY-----FL-PA-MP----------FPL-------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 180 ~V~~~-----f~-l~-~~----------~d~-------~~al~el~RvLKPGGrlvIs~ 214 (274)
.|++. .+ ++ +. .+. .++|..+.+.|| ||+|+.++
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT 234 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST 234 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence 99963 22 22 11 121 245777777787 99998853
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=111.60 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccCCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIYVPDKWG 176 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~~ 176 (274)
.+..+++++++.+++.++ +|| ||||||.++..|++++ .+|+|||++++|++.++++.+ ++++++||+.++++.+.
T Consensus 31 ~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 31 VSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEV 108 (271)
T ss_dssp CCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGS
T ss_pred CCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhc
Confidence 445689999999999999 999 9999999999999887 599999999999999999875 58999999999987653
Q ss_pred -CccEEEecccCc
Q 023974 177 -PLDVVFLYFLPA 188 (274)
Q Consensus 177 -sFD~V~~~f~l~ 188 (274)
.+|.|++|.-.+
T Consensus 109 ~~~~~iv~NlPy~ 121 (271)
T 3fut_A 109 PQGSLLVANLPYH 121 (271)
T ss_dssp CTTEEEEEEECSS
T ss_pred cCccEEEecCccc
Confidence 799999885443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=116.33 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
..+.+++.+...++.+|| +|||||.++..++++. + .+|+|+|+++.|++.| .+++++++|+.+.+. ++.||+
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~-~~~fD~ 101 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEP-GEAFDL 101 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCC-SSCEEE
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCc-cCCCCE
Confidence 456667777666677999 9999999999998763 3 7999999999999888 678999999988764 578999
Q ss_pred EEec--ccCc-C-------CCCH-------------------HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 181 VFLY--FLPA-M-------PFPL-------------------DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 181 V~~~--f~l~-~-------~~d~-------------------~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|+++ |... . +.+. ...++.+.++|||||++++..+.
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 9997 3322 1 1111 14588899999999999986553
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=116.05 Aligned_cols=140 Identities=7% Similarity=-0.057 Sum_probs=96.5
Q ss_pred CCeEE-EEcCchHHHHHHHHh-----------------CC-CcEEEEeCc-----------HHHHHHHHHhCC---CceE
Q 023974 117 SSKVL-VSISSEEFVDRVVES-----------------SP-SLLLVVHDS-----------LFVLAGIKEKYD---TVKC 163 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-----------------~~-~~V~gVD~S-----------~~ML~~Ar~k~~---~v~~ 163 (274)
.-+|+ +|||+|..+..+... .| -.|+..|+. +.|.+.+++... +.-|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 46788 999999887766443 24 678888998 888877765432 2456
Q ss_pred EEeeccC---CCCCCCCccEEEecccCcCCCCHHHH---------------------------------------HHHHH
Q 023974 164 WQGELIY---VPDKWGPLDVVFLYFLPAMPFPLDQV---------------------------------------FETLA 201 (274)
Q Consensus 164 ~~gDae~---LPf~~~sFD~V~~~f~l~~~~d~~~a---------------------------------------l~el~ 201 (274)
+.|.... -.|++++||+|++++++||+.+..+. |+-.+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544 67889999999999999998765422 34448
Q ss_pred HhcCCCCEEEEEcCCChhHH--H-----HHHhhCc---------------ccccccCCCHHHHHHHHHhCC-CcEeEEE
Q 023974 202 NRCSPGARVVISHPQGREAL--Q-----KQRKQFP---------------DVIVSDLPDQMTLQKAAGNHC-FQIDNFV 257 (274)
Q Consensus 202 RvLKPGGrlvIs~~~gr~~l--~-----~~~~~~~---------------~~si~~fps~~eL~~ll~~aG-F~~v~~~ 257 (274)
|.|||||+++++.. ++... . .+...|. ......||+.+|++.++++.| |++...+
T Consensus 213 ~eL~pGG~mvl~~~-gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFI-CKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEE-CCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEe-cCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 99999999999632 22111 0 1111111 113567999999999999985 7776654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-12 Score=112.56 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPDKW 175 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf~~ 175 (274)
+..+++++++.+++.++++|| ||||||.++. +. ++. .+|+|||++++|++.++++.. ++++++||+.++++.+
T Consensus 6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH
T ss_pred CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHH
Confidence 456889999999999999999 9999999999 64 453 239999999999999998864 6899999999998643
Q ss_pred -----CCccEEEecc
Q 023974 176 -----GPLDVVFLYF 185 (274)
Q Consensus 176 -----~sFD~V~~~f 185 (274)
+..|.|++|.
T Consensus 84 ~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHTSCEEEEEEC
T ss_pred hhcccCCceEEEECC
Confidence 2346778774
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=112.77 Aligned_cols=91 Identities=8% Similarity=0.070 Sum_probs=76.8
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEecccC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~f~l 187 (274)
.++.+|| +|||||.++.. ++ +..+|+|+|+|+.|++.|+++. ++++++++|+.+++ ++||+|++.- +
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp-P 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNL-P 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECC-T
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECC-c
Confidence 5788999 99999999988 76 3479999999999999999762 46899999999887 8999999862 2
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.. ..+.+.++.++|+|||++++..
T Consensus 268 ~~---~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 268 KF---AHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp TT---GGGGHHHHHHHEEEEEEEEEEE
T ss_pred Hh---HHHHHHHHHHHcCCCCEEEEEE
Confidence 22 2478999999999999999853
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.2e-11 Score=112.83 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=101.2
Q ss_pred HHHHHHHHHhCCCCC-----CCeEE-EEcCchHHHHHH--------HHhC-------C-CcEEEEeCcHHHHHHHHHhCC
Q 023974 102 IQRIDQIISAGEIDE-----SSKVL-VSISSEEFVDRV--------VESS-------P-SLLLVVHDSLFVLAGIKEKYD 159 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~-----~~rVL-vGcGTG~l~~~L--------~~~~-------~-~~V~gVD~S~~ML~~Ar~k~~ 159 (274)
+.++.+.++.+.+.. +-+|+ +|||||..+..+ .++. | -.|...|+...+-...=+..+
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 346677777776654 46899 999999887765 2221 3 678888887776422211111
Q ss_pred -----------------CceEEEeecc---CCCCCCCCccEEEecccCcCCCC---------------------------
Q 023974 160 -----------------TVKCWQGELI---YVPDKWGPLDVVFLYFLPAMPFP--------------------------- 192 (274)
Q Consensus 160 -----------------~v~~~~gDae---~LPf~~~sFD~V~~~f~l~~~~d--------------------------- 192 (274)
+--|+.|... .-.|++++||+|++++++||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v 192 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKT 192 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHH
Confidence 1134444433 35678999999999999999873
Q ss_pred -----------HHHHHHHHHHhcCCCCEEEEEcCCChh------------HH-HHHHhhC----cc-----------ccc
Q 023974 193 -----------LDQVFETLANRCSPGARVVISHPQGRE------------AL-QKQRKQF----PD-----------VIV 233 (274)
Q Consensus 193 -----------~~~al~el~RvLKPGGrlvIs~~~gr~------------~l-~~~~~~~----~~-----------~si 233 (274)
...+|+..+|.|||||+++++-. ++. .+ ..+...| .+ ...
T Consensus 193 ~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~-gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P 271 (374)
T 3b5i_A 193 TTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL-GRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE-ECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc
Confidence 33457888999999999999532 110 01 1121111 00 134
Q ss_pred ccCCCHHHHHHHHH-hCCCcEeEEEe
Q 023974 234 SDLPDQMTLQKAAG-NHCFQIDNFVD 258 (274)
Q Consensus 234 ~~fps~~eL~~ll~-~aGF~~v~~~d 258 (274)
..+|+.+|++++++ +.||++...+.
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~ 297 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVV 297 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEE
Confidence 67899999999998 58998776554
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-11 Score=113.28 Aligned_cols=112 Identities=6% Similarity=-0.051 Sum_probs=88.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC---------------------------------------CcEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP---------------------------------------SLLLV 143 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~---------------------------------------~~V~g 143 (274)
....++...+..++.+|| .+||||.++..++..+. .+|+|
T Consensus 189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 346678888999999999 99999999776655321 35999
Q ss_pred EeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEec--ccCcCC--CCHHHHHHHHHHhcCC--CCEEE
Q 023974 144 VHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLY--FLPAMP--FPLDQVFETLANRCSP--GARVV 211 (274)
Q Consensus 144 VD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~--~d~~~al~el~RvLKP--GGrlv 211 (274)
+|+++.|++.|+++. . .+++.++|+.+++.. ++||+|+++ |+.+.. .+..+..+++.++||+ ||+++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999762 2 489999999999874 599999999 777653 2345566777777777 99998
Q ss_pred EEcCC
Q 023974 212 ISHPQ 216 (274)
Q Consensus 212 Is~~~ 216 (274)
|..+.
T Consensus 348 iit~~ 352 (393)
T 3k0b_A 348 VLTSY 352 (393)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 86543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.9e-11 Score=112.70 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
+.++.+|| +|||||.++..|++.+ .+|+|||+|++|++.|+++.. +++|+++|+++++.. +||+|++.- ++
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~--~fD~Vv~dP-Pr 363 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVK--GFDTVIVDP-PR 363 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCT--TCSEEEECC-CT
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCcc--CCCEEEEcC-Cc
Confidence 56788999 9999999999998875 599999999999999997632 189999999998643 899999862 22
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.- -.+.+++.+ +.|+|||.++|+.
T Consensus 364 ~g-~~~~~~~~l-~~l~p~givyvsc 387 (425)
T 2jjq_A 364 AG-LHPRLVKRL-NREKPGVIVYVSC 387 (425)
T ss_dssp TC-SCHHHHHHH-HHHCCSEEEEEES
T ss_pred cc-hHHHHHHHH-HhcCCCcEEEEEC
Confidence 21 112455555 4699999999974
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-11 Score=109.39 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCc----EEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSL----LLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPD 173 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~----V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf 173 (274)
.+..+++++++.+++.++++|| ||||||.++..|++.+. + |+|||++++|++.|+++ .+++++++||+.++|+
T Consensus 26 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~ 104 (279)
T 3uzu_A 26 VDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDF 104 (279)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCG
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCCh
Confidence 3455889999999999999999 99999999999998764 4 99999999999999988 4679999999999987
Q ss_pred CCC------CccEEEec
Q 023974 174 KWG------PLDVVFLY 184 (274)
Q Consensus 174 ~~~------sFD~V~~~ 184 (274)
.+- ..+.|++|
T Consensus 105 ~~~~~~~~~~~~~vv~N 121 (279)
T 3uzu_A 105 GSIARPGDEPSLRIIGN 121 (279)
T ss_dssp GGGSCSSSSCCEEEEEE
T ss_pred hHhcccccCCceEEEEc
Confidence 542 23456665
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=102.49 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-CCCceEEEeeccCCCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-~~~v~~~~gDae~LPf~~~s 177 (274)
.+..+++++++.+++.++++|| ||||||.++..|++++..+|+|||+++.|++.++++ ..++++++||+.++++.+..
T Consensus 15 ~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~ 94 (249)
T 3ftd_A 15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLG 94 (249)
T ss_dssp ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSC
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHcc
Confidence 3456889999999999999999 999999999999887436999999999999999987 23589999999999876532
Q ss_pred -ccEEEecccCcCCCCHHHHHHHHHH
Q 023974 178 -LDVVFLYFLPAMPFPLDQVFETLAN 202 (274)
Q Consensus 178 -FD~V~~~f~l~~~~d~~~al~el~R 202 (274)
...|+++. +-+.. ...+..+.+
T Consensus 95 ~~~~vv~Nl-Py~i~--~~il~~ll~ 117 (249)
T 3ftd_A 95 KELKVVGNL-PYNVA--SLIIENTVY 117 (249)
T ss_dssp SSEEEEEEC-CTTTH--HHHHHHHHH
T ss_pred CCcEEEEEC-chhcc--HHHHHHHHh
Confidence 22555553 33332 334444444
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.4e-11 Score=112.97 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-------------C-CcEEEEeCcHHHHHHHHHh-----CC--C
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-------------P-SLLLVVHDSLFVLAGIKEK-----YD--T 160 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-------------~-~~V~gVD~S~~ML~~Ar~k-----~~--~ 160 (274)
...+.+++.+...++.+|| .|||||.++..+.+.. . ..++|+|+++.|++.|+.+ .. +
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 3456677777788889999 9999999988776531 2 5899999999999999875 22 5
Q ss_pred ceEEEeeccCCCCCCCCccEEEec--ccCcCCCCH---------------HHHHHHHHHhcCCCCEEEEEcC
Q 023974 161 VKCWQGELIYVPDKWGPLDVVFLY--FLPAMPFPL---------------DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 161 v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~~d~---------------~~al~el~RvLKPGGrlvIs~~ 215 (274)
+.+.+||+...+.. +.||+|+++ |...+..+. ...++.+.+.|||||++++..|
T Consensus 238 ~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 78999999887754 489999998 543332221 2789999999999999988544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=110.83 Aligned_cols=111 Identities=6% Similarity=-0.018 Sum_probs=88.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC---------------------------------------CcEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP---------------------------------------SLLLV 143 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~---------------------------------------~~V~g 143 (274)
....++...+..++.+|| ++||||.++..++..+. .+|+|
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 445677788888999999 99999999877765421 47999
Q ss_pred EeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEec--ccCcCC--CCHHHHHHHHHHhcCC--CCEEE
Q 023974 144 VHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLY--FLPAMP--FPLDQVFETLANRCSP--GARVV 211 (274)
Q Consensus 144 VD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~--~d~~~al~el~RvLKP--GGrlv 211 (274)
+|+++.|++.|+++. . .++|.++|+.+++.. ++||+|+++ |+.+.. .+..+..+++.++||+ ||+++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 999999999999863 2 589999999999864 699999998 665553 3455777888888887 99998
Q ss_pred EEcC
Q 023974 212 ISHP 215 (274)
Q Consensus 212 Is~~ 215 (274)
|..+
T Consensus 342 iit~ 345 (385)
T 3ldu_A 342 LITS 345 (385)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8644
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=108.18 Aligned_cols=112 Identities=11% Similarity=-0.017 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC---------------------------------------CcEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP---------------------------------------SLLLV 143 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~---------------------------------------~~V~g 143 (274)
....++...+..++..|| .+||||.++..++..+. .+|+|
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 445677888889999999 99999999876654321 35999
Q ss_pred EeCcHHHHHHHHHhC-----C-CceEEEeeccCCCCCCCCccEEEec--ccCcCC--CCHHHHHHHHHHhcCC--CCEEE
Q 023974 144 VHDSLFVLAGIKEKY-----D-TVKCWQGELIYVPDKWGPLDVVFLY--FLPAMP--FPLDQVFETLANRCSP--GARVV 211 (274)
Q Consensus 144 VD~S~~ML~~Ar~k~-----~-~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~--~d~~~al~el~RvLKP--GGrlv 211 (274)
+|+++.|++.|+++. . .+++.++|+.+++.. ++||+|+++ |+.+.. .+..+..+++.++||+ ||+++
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 999999999999762 2 489999999999875 599999999 887764 2455677778888887 99998
Q ss_pred EEcCC
Q 023974 212 ISHPQ 216 (274)
Q Consensus 212 Is~~~ 216 (274)
|..+.
T Consensus 341 iit~~ 345 (384)
T 3ldg_A 341 ILTND 345 (384)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 86553
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-10 Score=103.18 Aligned_cols=139 Identities=9% Similarity=-0.028 Sum_probs=95.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccEEEecccCcC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+..+|| ||||+|-++..+. ...+|+|+|++++|++.+++. ..+..+.++|....|.+ +++|+|++.-.++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHH
Confidence 5677999 9999999998886 337999999999999999976 35678899999888865 59999999977777
Q ss_pred CCCHH-HHHHHHHHhcCCCCEEEEEcC---CChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEE
Q 023974 190 PFPLD-QVFETLANRCSPGARVVISHP---QGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLV 265 (274)
Q Consensus 190 ~~d~~-~al~el~RvLKPGGrlvIs~~---~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~ 265 (274)
.++.+ .+.-++.+.|+++|.+|-... .|+. ..+...| .+.+.+.+.+.++.+.+.+-.+.+ ++
T Consensus 181 LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~--~gm~~~Y----------~~~~e~~~~~~~~~~~~~~~~nEl-~~ 247 (253)
T 3frh_A 181 LEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRG--KGMEANY----------AAWFEGGLPAEFEIEDKKTIGTEL-IY 247 (253)
T ss_dssp HHHHSTTHHHHHHHHCBCSEEEEEEECC-------------CH----------HHHHHHHSCTTEEEEEEEEETTEE-EE
T ss_pred hhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCC--cchhhHH----------HHHHHHHhhccchhhhheecCceE-EE
Confidence 64333 344488899999876665431 1221 1111111 356666666665665555555555 55
Q ss_pred EEEe
Q 023974 266 VLKF 269 (274)
Q Consensus 266 v~~~ 269 (274)
|++|
T Consensus 248 ~i~~ 251 (253)
T 3frh_A 248 LIKK 251 (253)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-10 Score=106.91 Aligned_cols=150 Identities=11% Similarity=0.011 Sum_probs=99.7
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC--------------------CCceEEEeeccCCCC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY--------------------DTVKCWQGELIYVPD 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~--------------------~~v~~~~gDae~LPf 173 (274)
++.+|| +|||||.++..++.+.+ .+|+++|+++++++.|+++. .+++++++|+.++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 678999 99999999999988744 68999999999999999642 237899999987642
Q ss_pred -CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh-----hHHHHHHhhCcccccccCCCHH-------
Q 023974 174 -KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR-----EALQKQRKQFPDVIVSDLPDQM------- 240 (274)
Q Consensus 174 -~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr-----~~l~~~~~~~~~~si~~fps~~------- 240 (274)
..+.||+|++.- + ......+..+.+.|||||.++++..... .....++++-.......+....
T Consensus 127 ~~~~~fD~I~lDP-~---~~~~~~l~~a~~~lk~gG~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~e~~~ri~l~ 202 (378)
T 2dul_A 127 ERHRYFHFIDLDP-F---GSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEVGTRILVG 202 (378)
T ss_dssp HSTTCEEEEEECC-S---SCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHHHHHHHHH
T ss_pred hccCCCCEEEeCC-C---CCHHHHHHHHHHhcCCCCEEEEEeecchhhccccHHHHHHHccCCCcccccccchhHHHHHH
Confidence 246899999651 1 2346889999999999999998753211 1111222222111111111111
Q ss_pred HHHHHHHhCCCcEeEEE-ecCCeEEEEEEe
Q 023974 241 TLQKAAGNHCFQIDNFV-DESGFYLVVLKF 269 (274)
Q Consensus 241 eL~~ll~~aGF~~v~~~-d~~~~yl~v~~~ 269 (274)
++.+...+.|+.+.... ...++|+.|+.+
T Consensus 203 ~~~~~~~~~g~~i~P~~~~~~~~y~rv~vr 232 (378)
T 2dul_A 203 VIARYAAKYDLGIDVILAYYKDHYFRAFVK 232 (378)
T ss_dssp HHHHHHHTTTEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHhcCcCCcEEEEEEEEecCCEEEEEEE
Confidence 13344677888776633 345778877764
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=104.48 Aligned_cols=138 Identities=9% Similarity=0.049 Sum_probs=102.2
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
.+..+|| ||||+|-++..+....+ .+|+|+|+++.|++.+++.. ...++.++|...-+ ..+.+|+|++.-.++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 4567999 99999999999887766 89999999999999999863 34677788876555 468899999998888
Q ss_pred CCCCHH--HHHHHHHHhcCCCCEEEEEcC--C-ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 189 MPFPLD--QVFETLANRCSPGARVVISHP--Q-GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 189 ~~~d~~--~al~el~RvLKPGGrlvIs~~--~-gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
..++.+ .++ ++.+.|+|||.+|-... . |+. ..+...| .+.+.+.+.+.|+.+...+-.+.++
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--~gm~~~Y----------~~~~e~~~~~~g~~~~~~~~~nEl~ 276 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--KGMFQNY----------SQSFESQARERSCRIQRLEIGNELI 276 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEECC---------CHHHHH----------HHHHHHHHHHHTCCEEEEEETTEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--cchhhHH----------HHHHHHHHHhcCCceeeeeecCeeE
Confidence 765443 455 99999999998877543 1 111 1122222 3577788888899888887777765
Q ss_pred EEE
Q 023974 264 LVV 266 (274)
Q Consensus 264 l~v 266 (274)
++|
T Consensus 277 y~i 279 (281)
T 3lcv_B 277 YVI 279 (281)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=107.27 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=77.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~ 175 (274)
....+++.+... +.+|| +|||||.++..|++.. .+|+|||+|++|++.|+++ .++++|+++|++++. +..
T Consensus 202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~-~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~ 279 (369)
T 3bt7_A 202 MLEWALDVTKGS-KGDLLELYCGNGNFSLALARNF-DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 279 (369)
T ss_dssp HHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGS-SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSS
T ss_pred HHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhh
Confidence 445566666554 57899 9999999999998755 5999999999999999975 357899999998753 111
Q ss_pred --------------CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 176 --------------GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 176 --------------~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
++||+|++. -++ ..+..++.+.|+|||++++..
T Consensus 280 ~~~~~~l~~~~~~~~~fD~Vv~d-PPr-----~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 280 VREFNRLQGIDLKSYQCETIFVD-PPR-----SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp CCCCTTGGGSCGGGCCEEEEEEC-CCT-----TCCCHHHHHHHTTSSEEEEEE
T ss_pred ccccccccccccccCCCCEEEEC-cCc-----cccHHHHHHHHhCCCEEEEEE
Confidence 389999974 111 124566777888999998853
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-10 Score=104.89 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCC--C-
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPD--K- 174 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf--~- 174 (274)
.++.+++.+.+.++.+|| +|||||.++..++++.+ ++|+|+|.|++|++.|+++. .+++++++|+.+++. .
T Consensus 14 Ll~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 14 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 356777888888999999 99999999999998865 79999999999999999875 468999999999862 1
Q ss_pred --CCCccEEEeccc
Q 023974 175 --WGPLDVVFLYFL 186 (274)
Q Consensus 175 --~~sFD~V~~~f~ 186 (274)
.++||+|++..+
T Consensus 94 ~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 94 LGIEKVDGILMDLG 107 (301)
T ss_dssp TTCSCEEEEEEECS
T ss_pred cCCCCCCEEEEcCc
Confidence 268999997643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=109.88 Aligned_cols=112 Identities=10% Similarity=0.060 Sum_probs=84.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC------------------------------------------C-C
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS------------------------------------------P-S 139 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~------------------------------------------~-~ 139 (274)
....++...+..++.+|| .+||||.++..++..+ + .
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 456677888888999999 9999999977655431 1 4
Q ss_pred cEEEEeCcHHHHHHHHHhC-----C-CceEEEeeccCC--CCCCCCccEEEec--ccCcCCCC--H---HHHHHHHHHhc
Q 023974 140 LLLVVHDSLFVLAGIKEKY-----D-TVKCWQGELIYV--PDKWGPLDVVFLY--FLPAMPFP--L---DQVFETLANRC 204 (274)
Q Consensus 140 ~V~gVD~S~~ML~~Ar~k~-----~-~v~~~~gDae~L--Pf~~~sFD~V~~~--f~l~~~~d--~---~~al~el~RvL 204 (274)
+|+|+|+++.|++.|+++. . .++|.++|+.++ |+.+++||+|+++ |+.+.-.+ . -+.+.++.+.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 7999999999999999762 2 279999999998 5545589999999 88776432 2 23455666677
Q ss_pred CCCCEEEEEcC
Q 023974 205 SPGARVVISHP 215 (274)
Q Consensus 205 KPGGrlvIs~~ 215 (274)
.|||+++|..+
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 79999999644
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-10 Score=107.23 Aligned_cols=140 Identities=16% Similarity=0.021 Sum_probs=98.7
Q ss_pred CCeEE-EEcCchHHHHHH--------HHh--------CC-CcEEEEeCcHHHHHHHHHhCCC------ceEEEeeccC--
Q 023974 117 SSKVL-VSISSEEFVDRV--------VES--------SP-SLLLVVHDSLFVLAGIKEKYDT------VKCWQGELIY-- 170 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L--------~~~--------~~-~~V~gVD~S~~ML~~Ar~k~~~------v~~~~gDae~-- 170 (274)
.-+|+ +||++|..+..+ .++ .| -.|+..|+...+-..+-+..+. .-|+.|....
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 35688 999999655433 221 24 6799999999999988877653 3566665555
Q ss_pred -CCCCCCCccEEEecccCcCCCCHHH------------------H---------------HHHHHHhcCCCCEEEEEcCC
Q 023974 171 -VPDKWGPLDVVFLYFLPAMPFPLDQ------------------V---------------FETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 171 -LPf~~~sFD~V~~~f~l~~~~d~~~------------------a---------------l~el~RvLKPGGrlvIs~~~ 216 (274)
-.|+++++|+|++++++||+.+..+ + |+-.+|.|||||+++++-.
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~- 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL- 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE-
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe-
Confidence 7789999999999999999765332 2 7777999999999999521
Q ss_pred Ch-----------hHHHHHHhhCc---------------ccccccCCCHHHHHHHHHhCCC-cEeEEE
Q 023974 217 GR-----------EALQKQRKQFP---------------DVIVSDLPDQMTLQKAAGNHCF-QIDNFV 257 (274)
Q Consensus 217 gr-----------~~l~~~~~~~~---------------~~si~~fps~~eL~~ll~~aGF-~~v~~~ 257 (274)
|+ ..++.+...|. -.....||+.+|++.++++.|. ++...+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 11 11223333321 1245679999999999999965 665543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.92 E-value=9e-10 Score=99.24 Aligned_cols=77 Identities=10% Similarity=-0.050 Sum_probs=62.2
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcH-------HHHHHHHHhC-----CC-ceEEEeeccCC-C-
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSL-------FVLAGIKEKY-----DT-VKCWQGELIYV-P- 172 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~-------~ML~~Ar~k~-----~~-v~~~~gDae~L-P- 172 (274)
.+.+...++.+|| +|||+|.++..+++.+ ++|+|+|+|+ +|++.|+++. .+ ++++++|++++ +
T Consensus 76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~ 154 (258)
T 2r6z_A 76 AKAVNHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPA 154 (258)
T ss_dssp HHHTTGGGCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHH
T ss_pred HHHhCcCCcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHh
Confidence 3334566778999 9999999999998876 5999999999 9999998652 23 89999999884 4
Q ss_pred CCC--CCccEEEeccc
Q 023974 173 DKW--GPLDVVFLYFL 186 (274)
Q Consensus 173 f~~--~sFD~V~~~f~ 186 (274)
+.+ ++||+|++.-.
T Consensus 155 ~~~~~~~fD~V~~dP~ 170 (258)
T 2r6z_A 155 LVKTQGKPDIVYLDPM 170 (258)
T ss_dssp HHHHHCCCSEEEECCC
T ss_pred hhccCCCccEEEECCC
Confidence 344 79999998743
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=95.80 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=88.9
Q ss_pred CCCCeEE-EEcCchHHHHHHHHh-------CC------CcEEEEeCcH---HHHHHH-----------HHh---------
Q 023974 115 DESSKVL-VSISSEEFVDRVVES-------SP------SLLLVVHDSL---FVLAGI-----------KEK--------- 157 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~-------~~------~~V~gVD~S~---~ML~~A-----------r~k--------- 157 (274)
.++.+|| ||||||..+..+.+. .| .++++++..+ +||++| ++.
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 3556999 999999887765442 44 3899999655 777754 321
Q ss_pred ------CC----CceEEEeeccC-CCCCCC----CccEEEec-ccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChh
Q 023974 158 ------YD----TVKCWQGELIY-VPDKWG----PLDVVFLY-FLPAMPFP--LDQVFETLANRCSPGARVVISHPQGRE 219 (274)
Q Consensus 158 ------~~----~v~~~~gDae~-LPf~~~----sFD~V~~~-f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~ 219 (274)
+. +++++.||+.+ ||..++ .||+|+.- |.+.-.++ -.++|++++|+|||||+|+.-..
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 11 35688999988 665443 89999985 65542222 25899999999999999985211
Q ss_pred HHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecC-CeEEEEEEecC
Q 023974 220 ALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES-GFYLVVLKFSK 271 (274)
Q Consensus 220 ~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~-~~yl~v~~~~~ 271 (274)
...+++.++++||++....... ..-+++.+++.
T Consensus 215 -------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~~ 248 (257)
T 2qy6_A 215 -------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQ 248 (257)
T ss_dssp -------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC-
T ss_pred -------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEecC
Confidence 1246778888999876543321 22355555543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.5e-09 Score=103.36 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C---------------CCcEEEEeCcHHHHHHHHHh-----C
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S---------------PSLLLVVHDSLFVLAGIKEK-----Y 158 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~---------------~~~V~gVD~S~~ML~~Ar~k-----~ 158 (274)
.++.+++.+...++.+|| .|||||.++..+.+. . ...++|+|+++.|++.|+.+ .
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 345567777778889999 999999998766543 1 13799999999999999965 2
Q ss_pred CC-----ceEEEeeccCCC-CCCCCccEEEec--ccCcCCC-----------C-HHHHHHHHHHhcCCCCEEEEEcC
Q 023974 159 DT-----VKCWQGELIYVP-DKWGPLDVVFLY--FLPAMPF-----------P-LDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 159 ~~-----v~~~~gDae~LP-f~~~sFD~V~~~--f~l~~~~-----------d-~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+ +.+.+||+...+ ...+.||+|+++ |+..+.. + -...+..+.+.|||||++++..|
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 33 678999986654 456789999998 5443321 1 12688999999999999988544
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.8e-09 Score=98.86 Aligned_cols=98 Identities=14% Similarity=-0.073 Sum_probs=78.6
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHh-----CCC--ceEEEeeccCCC--CCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEK-----YDT--VKCWQGELIYVP--DKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k-----~~~--v~~~~gDae~LP--f~~~sFD~V~ 182 (274)
.++.+|| ++||||.++..++.+. . .+|++||+++.+++.+++. ..+ ++++++|+.++. ...+.||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 4678999 9999999999888763 2 6899999999999999975 334 889999997643 2246899999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+.- + ..+...+..+.+.|||||.|++++..
T Consensus 131 lDP-~---g~~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 131 LDP-F---GTPVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp ECC-S---SCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ECC-C---cCHHHHHHHHHHHhCCCCEEEEEecc
Confidence 873 1 23467889999999999999997643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-09 Score=96.45 Aligned_cols=116 Identities=6% Similarity=-0.082 Sum_probs=83.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCCCCCCCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LPf~~~sF 178 (274)
++.++.+...+.++.+|| ||||+|-.+..++++.+ ..|+|+|++.+|....+.. ..++...+++++...+.+++|
T Consensus 62 KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 62 KLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 666777777788999999 99999999998877644 6889999986652111110 114556677777677788999
Q ss_pred cEEEecccCc----CCCCHH--HHHHHHHHhcCCC-CEEEEEcCC--Chh
Q 023974 179 DVVFLYFLPA----MPFPLD--QVFETLANRCSPG-ARVVISHPQ--GRE 219 (274)
Q Consensus 179 D~V~~~f~l~----~~~d~~--~al~el~RvLKPG-GrlvIs~~~--gr~ 219 (274)
|+|++..+++ +.+..+ ..++.+.++|||| |.|++--.. +..
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~ 191 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPD 191 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHH
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcc
Confidence 9999998776 332222 2457889999999 999995444 654
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.4e-09 Score=93.73 Aligned_cols=101 Identities=9% Similarity=0.023 Sum_probs=72.9
Q ss_pred HHHHHhCCCCCC--CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-------------C-CCceEEEeec
Q 023974 106 DQIISAGEIDES--SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-------------Y-DTVKCWQGEL 168 (274)
Q Consensus 106 ~~ll~~~~~~~~--~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-------------~-~~v~~~~gDa 168 (274)
..+++.+++.++ .+|| ++||+|..+..++.++ ++|++||.++.|.+.+++. . .+++++++|+
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g-~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 455667778788 8999 9999999999999887 4899999999885554432 1 3578999999
Q ss_pred cC-CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCC
Q 023974 169 IY-VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGA 208 (274)
Q Consensus 169 e~-LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGG 208 (274)
.+ ++...++||+|++.-.+++. +...++++..++|++.|
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred HHHHHhCcccCCEEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 87 45334579999998544443 33467777778887766
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.8e-08 Score=89.68 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeeccC-CCCCCCCccEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGELIY-VPDKWGPLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDae~-LPf~~~sFD~V 181 (274)
+...+|| ||-|.|..+..+++..+ .+|+.||+.+++++.+++-+ |+++++.+|+.+ +-...++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 3457999 99999999999987655 79999999999999999754 458899999977 44566899999
Q ss_pred Eeccc----CcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 182 FLYFL----PAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~----l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++-.. +...---.+.++.+.|+|+|||.++.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 96522 11111125789999999999999998
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=93.58 Aligned_cols=113 Identities=5% Similarity=-0.046 Sum_probs=83.5
Q ss_pred HHHHHHHhCC----CCCCCeEE-EEcCchHHHHHHHHh---C-CCcEEEEeCcHHHHHHHHHh-----C--CCceEEEee
Q 023974 104 RIDQIISAGE----IDESSKVL-VSISSEEFVDRVVES---S-PSLLLVVHDSLFVLAGIKEK-----Y--DTVKCWQGE 167 (274)
Q Consensus 104 w~~~ll~~~~----~~~~~rVL-vGcGTG~l~~~L~~~---~-~~~V~gVD~S~~ML~~Ar~k-----~--~~v~~~~gD 167 (274)
..+-+++.+. ..++.+|| .|||||.++..+.+. . ...++|+|+++.|++.|+.+ . +++.+.+||
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gD 284 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNAD 284 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecc
Confidence 3444444444 45778999 999999998777665 1 26899999999999999865 2 346789999
Q ss_pred ccCC--C-CCCCCccEEEec--ccCcCCC------CH---------------HHHHHHHHHhcC-CCCEEEEEcCC
Q 023974 168 LIYV--P-DKWGPLDVVFLY--FLPAMPF------PL---------------DQVFETLANRCS-PGARVVISHPQ 216 (274)
Q Consensus 168 ae~L--P-f~~~sFD~V~~~--f~l~~~~------d~---------------~~al~el~RvLK-PGGrlvIs~~~ 216 (274)
.... | .....||+|++| |+..|-. ++ -..+..+.+.|| |||++++-.|.
T Consensus 285 tL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 285 TLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp TTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred eecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 8776 5 457899999999 6544421 11 136889999999 99999875453
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-08 Score=96.67 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=58.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCC-CC-CCCCccEEEe
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYV-PD-KWGPLDVVFL 183 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~L-Pf-~~~sFD~V~~ 183 (274)
+.+|.+|| +|||+|..+..+++.+ .+|+|||.|+.|++.|+++. .+++++++|+.+. +. .+++||+|++
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g-~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34588999 9999999999998776 59999999999999999763 3589999999884 43 3468999998
Q ss_pred c
Q 023974 184 Y 184 (274)
Q Consensus 184 ~ 184 (274)
.
T Consensus 170 D 170 (410)
T 3ll7_A 170 D 170 (410)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=82.89 Aligned_cols=121 Identities=7% Similarity=0.070 Sum_probs=89.2
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+.+|.+|| +||++|-.+..|++++ ++|+|||..+ |+......++++++++|+..+....++||+|+|-... +
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~--l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~----~ 281 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP--MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE----K 281 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC--CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS----C
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh--cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC----C
Confidence 57899999 9999999999999887 5999999873 3333345789999999999988778899999996544 6
Q ss_pred HHHHHHHHHHhcCCC--CEEEEE-cCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCc
Q 023974 193 LDQVFETLANRCSPG--ARVVIS-HPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 193 ~~~al~el~RvLKPG--GrlvIs-~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
+.+++.-+.+.|..| +.++++ ........+..... .+.+.+.++..||.
T Consensus 282 p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~-----------~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 282 PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHN-----------LAYIQAQLDEHGIN 333 (375)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHH-----------HHHHHHHHHHTTCC
T ss_pred hHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHH-----------HHHHHHHHHhcCcc
Confidence 788888888888877 244442 22222222222221 35677889999985
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-07 Score=93.91 Aligned_cols=112 Identities=8% Similarity=-0.103 Sum_probs=80.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC----------------CCcEEEEeCcHHHHHHHHHhC------C
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS----------------PSLLLVVHDSLFVLAGIKEKY------D 159 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~----------------~~~V~gVD~S~~ML~~Ar~k~------~ 159 (274)
..++.+++.+...++ +|| .|||||.++..+.+.- ...++|+|+++.|++.|+.+. .
T Consensus 232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 355666777776665 999 9999999876653310 247999999999999999752 1
Q ss_pred CceEEEeeccCCC-CCCCCccEEEec--ccCc-CCC-----C--------------------H-HHHHHHHHHhcCCCCE
Q 023974 160 TVKCWQGELIYVP-DKWGPLDVVFLY--FLPA-MPF-----P--------------------L-DQVFETLANRCSPGAR 209 (274)
Q Consensus 160 ~v~~~~gDae~LP-f~~~sFD~V~~~--f~l~-~~~-----d--------------------~-~~al~el~RvLKPGGr 209 (274)
++.+.+||....| +.+..||+|++| |+.. |.. + . -..++.+.+.|||||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 2344789976655 456899999998 6643 211 0 1 1578899999999999
Q ss_pred EEEEcC
Q 023974 210 VVISHP 215 (274)
Q Consensus 210 lvIs~~ 215 (274)
++|--|
T Consensus 391 ~aiVlP 396 (544)
T 3khk_A 391 MALLLA 396 (544)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 987544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.1e-07 Score=85.16 Aligned_cols=97 Identities=12% Similarity=0.135 Sum_probs=73.8
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-------------CceEEEeeccCC----CCCCCC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-------------TVKCWQGELIYV----PDKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-------------~v~~~~gDae~L----Pf~~~s 177 (274)
+..+|| ||-|.|..+..+++..+.+|+.||+.+++++.|++-++ .++++.+|+.+. +...+.
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 457999 99999999999887544899999999999999998643 267888998542 234578
Q ss_pred ccEEEeccc-CcCCCCH---------HHHHHHHHHhcCCCCEEEE
Q 023974 178 LDVVFLYFL-PAMPFPL---------DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 178 FD~V~~~f~-l~~~~d~---------~~al~el~RvLKPGGrlvI 212 (274)
||+|+.-.. .....++ ++.++.+.++|+|||.++.
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999997532 1111121 4678889999999999987
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-07 Score=85.29 Aligned_cols=116 Identities=6% Similarity=-0.064 Sum_probs=79.1
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHH--hC-CCceEEEeeccCCCCCCCCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKE--KY-DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~--k~-~~v~~~~gDae~LPf~~~sF 178 (274)
++.++.+...+.++.+|| ||||+|-.+.+++.+.+ ..|+|+|++..|...+.. .. .++...+.+++...+..+.+
T Consensus 78 KL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 666777777888999999 99999999998876655 789999999876544432 11 12333332222233456899
Q ss_pred cEEEecccCc----CCCCHH--HHHHHHHHhcCCC--CEEEEEcCC--Chh
Q 023974 179 DVVFLYFLPA----MPFPLD--QVFETLANRCSPG--ARVVISHPQ--GRE 219 (274)
Q Consensus 179 D~V~~~f~l~----~~~d~~--~al~el~RvLKPG--GrlvIs~~~--gr~ 219 (274)
|+|+|-.++. ..+... ..|.-+.++|||| |.|++--.. +..
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~ 208 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPL 208 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHH
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCcc
Confidence 9999987776 221111 2355557899999 999995454 654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=76.88 Aligned_cols=91 Identities=12% Similarity=-0.056 Sum_probs=67.0
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---C-----CceEEEeeccC---------------C
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---D-----TVKCWQGELIY---------------V 171 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~-----~v~~~~gDae~---------------L 171 (274)
+..+|| +||| .-+..+++...++|+.||.++++.+.|++.. + +++++.||+.+ +
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 456999 9985 5555665531279999999999999999642 2 47899999754 2
Q ss_pred C--------C-CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 172 P--------D-KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 172 P--------f-~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
| . ..++||+|++-.-.+ ...+..+.+.|||||++++-
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRFR-----VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSSH-----HHHHHHHHHHCSSCEEEEET
T ss_pred HHHhhhhhccccCCCCCEEEEeCCCc-----hhHHHHHHHhcCCCeEEEEe
Confidence 2 1 247899999875332 36677778999999999773
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=90.16 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhC----CCcEEEEeCcHHHHHHH--HHhCC---------CceEEEeeccCC-CCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESS----PSLLLVVHDSLFVLAGI--KEKYD---------TVKCWQGELIYV-PDKWG 176 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~----~~~V~gVD~S~~ML~~A--r~k~~---------~v~~~~gDae~L-Pf~~~ 176 (274)
..++.+|| .|||||.++..+++.. +..++|+|+++.+++.| +.... ...+..+|.... +....
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 34678999 9999999999887754 25799999999999999 43221 124555666553 23467
Q ss_pred CccEEEec--ccCcCCCC---------------------------HHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 177 PLDVVFLY--FLPAMPFP---------------------------LDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 177 sFD~V~~~--f~l~~~~d---------------------------~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.||+|++| |+..+..+ ....++.+.+.|||||++++-.|.
T Consensus 399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 89999999 64422211 113467789999999999885553
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.5e-07 Score=91.90 Aligned_cols=93 Identities=8% Similarity=0.098 Sum_probs=64.2
Q ss_pred CeEE-EEcCchHHHHHHHH----hC---------C-CcEEEEeCcHHHHHHHHHh----CC-CceEEEeeccCCCCC---
Q 023974 118 SKVL-VSISSEEFVDRVVE----SS---------P-SLLLVVHDSLFVLAGIKEK----YD-TVKCWQGELIYVPDK--- 174 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~----~~---------~-~~V~gVD~S~~ML~~Ar~k----~~-~v~~~~gDae~LPf~--- 174 (274)
..|| ||||||-+....++ .+ . .+|+|||-++.....++++ .. .+++++||++++...
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~ 490 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKD 490 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccccc
Confidence 4688 99999999643211 12 1 4999999998544333322 33 499999999998653
Q ss_pred --CCCccEEEecccCcCCCC---HHHHHHHHHHhcCCCCEEE
Q 023974 175 --WGPLDVVFLYFLPAMPFP---LDQVFETLANRCSPGARVV 211 (274)
Q Consensus 175 --~~sFD~V~~~f~l~~~~d---~~~al~el~RvLKPGGrlv 211 (274)
.+.+|+|++-. +..+.+ -.+.|.-+.|.|||||.++
T Consensus 491 ~~~ekVDIIVSEl-mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 491 RGFEQPDIIVSEL-LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp TTCCCCSEEEECC-CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CCCCcccEEEEec-cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 58999999772 222222 2367777789999999753
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-06 Score=83.32 Aligned_cols=104 Identities=14% Similarity=-0.008 Sum_probs=78.7
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC-----------CCceEEEeeccCCC-CCCC
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY-----------DTVKCWQGELIYVP-DKWG 176 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~-----------~~v~~~~gDae~LP-f~~~ 176 (274)
.+++.+|++|| +|+|.|-=+..|+..+. +.|+|+|+|+.-++..+++. .++.....|+..++ ...+
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 46889999999 99999988888888766 78999999999887776542 25778889998876 3568
Q ss_pred CccEEEe----cc---c-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 177 PLDVVFL----YF---L-PAMPFP----------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 177 sFD~V~~----~f---~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
.||.|.+ +- + .+.-++ ..+.|....+.|||||+||-++
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 9999984 32 2 111111 1356778899999999998854
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=88.10 Aligned_cols=91 Identities=7% Similarity=0.051 Sum_probs=65.0
Q ss_pred CeEE-EEcCchHHHHHHHHh---CC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCccEEEec-
Q 023974 118 SKVL-VSISSEEFVDRVVES---SP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPLDVVFLY- 184 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~---~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sFD~V~~~- 184 (274)
..|| ||||||-+....++. +. .+|+||+-|+ |-..|++.. ..|++++||++++-.+ +.+|+|++-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSEw 436 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSEL 436 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEEc
Confidence 4688 999999985544333 22 3789999997 777776542 2489999999997653 789999965
Q ss_pred --ccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 185 --FLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 185 --f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
+.+-+-.-+ +++...-|.|||||.++
T Consensus 437 MG~fLl~E~ml-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 437 LGSFADNELSP-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred CcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence 222222223 67777789999999863
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.12 E-value=5.1e-06 Score=76.40 Aligned_cols=79 Identities=8% Similarity=0.066 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCC-----CC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPD-----KW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf-----~~ 175 (274)
.++.+++.+.+.++..+| .+||.|-.+..++++ .++|+|+|.++++++.|++ . +++.+++++..+++. ..
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~g~ 87 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAALGV 87 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHcCC
Confidence 467888888999999999 999999999999887 4699999999999999998 6 468999999998752 23
Q ss_pred CCccEEEec
Q 023974 176 GPLDVVFLY 184 (274)
Q Consensus 176 ~sFD~V~~~ 184 (274)
++||.|++.
T Consensus 88 ~~vDgIL~D 96 (285)
T 1wg8_A 88 ERVDGILAD 96 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCcCEEEeC
Confidence 689999964
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7.7e-06 Score=75.65 Aligned_cols=115 Identities=7% Similarity=-0.035 Sum_probs=74.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHH--h-CCCceEEEeeccCCCCCCCCc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKE--K-YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~--k-~~~v~~~~gDae~LPf~~~sF 178 (274)
++.++.+.--+.++.+|| |||++|-.+..++++.+ ..|+|+|++..|....+. . ..++.....+++..-+..+.+
T Consensus 69 KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 555666653456888999 99999999999988644 689999998765322111 0 112322332222233456899
Q ss_pred cEEEecccCcCCCCH--H-----HHHHHHHHhcCCC-CEEEEEcCC--Chh
Q 023974 179 DVVFLYFLPAMPFPL--D-----QVFETLANRCSPG-ARVVISHPQ--GRE 219 (274)
Q Consensus 179 D~V~~~f~l~~~~d~--~-----~al~el~RvLKPG-GrlvIs~~~--gr~ 219 (274)
|+|++-.++. .... + ..|.-+.++|||| |.||+--.. +..
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~ 198 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPD 198 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHH
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCcc
Confidence 9999987776 3222 1 3355557899999 999995444 654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.8e-06 Score=69.08 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=68.3
Q ss_pred CCCCeEE-EEcCch-HHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCC--CCccEEEecccCcC
Q 023974 115 DESSKVL-VSISSE-EFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKW--GPLDVVFLYFLPAM 189 (274)
Q Consensus 115 ~~~~rVL-vGcGTG-~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~--~sFD~V~~~f~l~~ 189 (274)
.++.+|| ||||+| +.+..|++ .+ ..|+|+|+++.-++ +++.|+-+ |..+ +.||+|. .++-
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~~g-~~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIY---sirP 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKHSK-VDLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIY---SIRP 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHHSC-CEEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEE---EESC
T ss_pred CCCCcEEEEccCCChHHHHHHHHhCC-CeEEEEECCccccc----------eEEccCCC-CcccccCCcCEEE---EcCC
Confidence 4457999 999999 79999987 44 58999999986444 88999877 4433 4899996 4577
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+.+....+.++++.. |.-++|.+..
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~ 123 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLT 123 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 789999999999988 8999998543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-05 Score=70.48 Aligned_cols=115 Identities=10% Similarity=0.157 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHH------HHHHHHHhCCCceEEEe-eccCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLF------VLAGIKEKYDTVKCWQG-ELIYVPD 173 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~------ML~~Ar~k~~~v~~~~g-Dae~LPf 173 (274)
.++..+.+...+.++.+|| |||++|-.+.+.+.... ..|+|+|+-.. |.++-- ..-+.|.++ |+..++.
T Consensus 81 ~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~--w~lV~~~~~~Dv~~l~~ 158 (321)
T 3lkz_A 81 AKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG--WNIVTMKSGVDVFYRPS 158 (321)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT--GGGEEEECSCCTTSSCC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC--CcceEEEeccCHhhCCC
Confidence 3667777777889999999 99999999997776543 78999999865 111100 112788888 9988875
Q ss_pred CCCCccEEEecccCcCCCCHH----H---HHHHHHHhcCCC-CEEEEE--cCCChhHHH
Q 023974 174 KWGPLDVVFLYFLPAMPFPLD----Q---VFETLANRCSPG-ARVVIS--HPQGREALQ 222 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~----~---al~el~RvLKPG-GrlvIs--~~~gr~~l~ 222 (274)
.++|.|+|-.+ .--.++. + +|.-+.+.|++| |-++|- .|+....++
T Consensus 159 --~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e 214 (321)
T 3lkz_A 159 --ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIE 214 (321)
T ss_dssp --CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHH
T ss_pred --CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHH
Confidence 77999998765 2222322 2 555567899999 999983 343344433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-06 Score=99.84 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=73.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHh-C--C---CcEEEEeCcHHHHHHHHHhCCCceEEEe--eccCC-CCCCCCccEEEec
Q 023974 115 DESSKVL-VSISSEEFVDRVVES-S--P---SLLLVVHDSLFVLAGIKEKYDTVKCWQG--ELIYV-PDKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~-~--~---~~V~gVD~S~~ML~~Ar~k~~~v~~~~g--Dae~L-Pf~~~sFD~V~~~ 184 (274)
.+..+|| ||.|||..+..+.+. . + ..++-.|+|++..+.|++++..+..-.+ |.++. ++...+||+|+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 4567999 999999776654432 1 1 3788999999999999988764433332 33332 4556789999999
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccc--ccccCCCHHHHHHHHHhCCCcEeEEEec-CC
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDV--IVSDLPDQMTLQKAAGNHCFQIDNFVDE-SG 261 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~--si~~fps~~eL~~ll~~aGF~~v~~~d~-~~ 261 (274)
.++|-..+..+.++++.+.|||||++++........+......+... ....+.+.+++.++++++||..+..... ..
T Consensus 1319 ~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~~~~~~ 1398 (2512)
T 2vz8_A 1319 CALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALKRSFYG 1398 (2512)
T ss_dssp CC--------------------CCEEEEEEC--------------------------CTTTTSSTTTTEEEEEEEEETTS
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceeeeccCCCc
Confidence 88888888999999999999999999885432111111111111100 0112345566777888999987765432 23
Q ss_pred eEEEEEEe
Q 023974 262 FYLVVLKF 269 (274)
Q Consensus 262 ~yl~v~~~ 269 (274)
..+.+.++
T Consensus 1399 ~~~~~~~~ 1406 (2512)
T 2vz8_A 1399 SVLFLCRQ 1406 (2512)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEec
Confidence 34555554
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.1e-05 Score=73.38 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----C----------CCcEEEEeCcHHHHHHHHHh-----CCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----S----------PSLLLVVHDSLFVLAGIKEK-----YDT 160 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~----------~~~V~gVD~S~~ML~~Ar~k-----~~~ 160 (274)
.+..++-+++.+...++.+|+ -+||||.|.....+. . ...+.|+|+.+.|.+.|+-. ...
T Consensus 202 P~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~ 281 (530)
T 3ufb_A 202 PRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY 281 (530)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc
Confidence 344667778888889999999 999999997654331 1 13699999999999999854 334
Q ss_pred ceEEEeeccCCCCC----CCCccEEEec--ccCcCCC-------------CHH-HHHHHHHHhcC-------CCCEEEEE
Q 023974 161 VKCWQGELIYVPDK----WGPLDVVFLY--FLPAMPF-------------PLD-QVFETLANRCS-------PGARVVIS 213 (274)
Q Consensus 161 v~~~~gDae~LPf~----~~sFD~V~~~--f~l~~~~-------------d~~-~al~el~RvLK-------PGGrlvIs 213 (274)
..+..+|....|.. ...||+|++| |+-.+.. +.+ ..+..+.+.|| |||+++|-
T Consensus 282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avV 361 (530)
T 3ufb_A 282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVV 361 (530)
T ss_dssp CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEE
T ss_pred ccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEE
Confidence 56778887666543 3579999999 6543311 111 24566777787 79999885
Q ss_pred cC
Q 023974 214 HP 215 (274)
Q Consensus 214 ~~ 215 (274)
-|
T Consensus 362 lP 363 (530)
T 3ufb_A 362 VP 363 (530)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.3e-05 Score=70.68 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=84.0
Q ss_pred cccccccccCCccchhHHHHHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHh----C-C-CcEEEEeCcHH-------
Q 023974 85 EIDWSFLDSDELNFKEHIQRIDQIISAGE-IDESSKVL-VSISSEEFVDRVVES----S-P-SLLLVVHDSLF------- 149 (274)
Q Consensus 85 ~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~----~-~-~~V~gVD~S~~------- 149 (274)
-.+|....+.. -+.+....+..+++.+. .....+|| +||.+|.-+..+++. + + .+|+++|.-++
T Consensus 75 g~~~~~~~~tm-v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~ 153 (282)
T 2wk1_A 75 GRDWPANAHTM-IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGED 153 (282)
T ss_dssp TCSCBSSCSCS-SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTT
T ss_pred cccCCcccccc-cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccc
Confidence 34576543322 23345555666665542 12234999 999999877766542 1 3 78999995321
Q ss_pred -------------------HHHHHHHh---C----CCceEEEeeccC-CCCC-CCCccEEEecccCcCCCCHHHHHHHHH
Q 023974 150 -------------------VLAGIKEK---Y----DTVKCWQGELIY-VPDK-WGPLDVVFLYFLPAMPFPLDQVFETLA 201 (274)
Q Consensus 150 -------------------ML~~Ar~k---~----~~v~~~~gDae~-LPf~-~~sFD~V~~~f~l~~~~d~~~al~el~ 201 (274)
+++.+++. + +++++++||+.+ ||.. +++||+|++=.-. -..-..+|+.+.
T Consensus 154 ~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~ 231 (282)
T 2wk1_A 154 GYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLY 231 (282)
T ss_dssp SCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHG
T ss_pred ccccccccccccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHH
Confidence 46667654 2 568999999976 6643 5789999987532 122357899999
Q ss_pred HhcCCCCEEEEEc
Q 023974 202 NRCSPGARVVISH 214 (274)
Q Consensus 202 RvLKPGGrlvIs~ 214 (274)
+.|+|||.+++-+
T Consensus 232 p~L~pGGiIv~DD 244 (282)
T 2wk1_A 232 PKVSVGGYVIVDD 244 (282)
T ss_dssp GGEEEEEEEEESS
T ss_pred hhcCCCEEEEEcC
Confidence 9999999888743
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00021 Score=64.55 Aligned_cols=113 Identities=9% Similarity=0.078 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHH--HHHh--CCCceEEEe-eccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAG--IKEK--YDTVKCWQG-ELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~--Ar~k--~~~v~~~~g-Dae~LPf~~~ 176 (274)
++.++.+...+.++.+|| +||++|-.+.+.+.... .+|+|+|+-..=-+. ..+. .+.++|.++ |+..++- .
T Consensus 66 KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~--~ 143 (267)
T 3p8z_A 66 KLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPP--E 143 (267)
T ss_dssp HHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCC--C
T ss_pred HHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCC--c
Confidence 677777777889999999 99999999997777644 789999987531100 0011 235899999 9988875 7
Q ss_pred CccEEEecccCcCCCCHH----H---HHHHHHHhcCCCCEEEE--EcCCChhH
Q 023974 177 PLDVVFLYFLPAMPFPLD----Q---VFETLANRCSPGARVVI--SHPQGREA 220 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~----~---al~el~RvLKPGGrlvI--s~~~gr~~ 220 (274)
++|.|+|--+.-. .++. + +|+-+.+.|++ |-++| ..|.....
T Consensus 144 ~~DtllcDIgeSs-~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v 194 (267)
T 3p8z_A 144 KCDTLLCDIGESS-PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTV 194 (267)
T ss_dssp CCSEEEECCCCCC-SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHH
T ss_pred cccEEEEecCCCC-CChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhH
Confidence 7999999877733 2322 2 55555788999 89988 34555333
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=68.72 Aligned_cols=103 Identities=8% Similarity=-0.073 Sum_probs=71.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-----C--CCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-----P--DKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-----P--f~~~sF 178 (274)
++..++.+|++|| +|||+ |.++..+++. +..+|+++|.+++.++.+++ +.. ..+.-+-+++ . .....|
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa-~~i~~~~~~~~~~~~~~~~~g~g~ 255 (398)
T 2dph_A 178 CVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD-AGF-ETIDLRNSAPLRDQIDQILGKPEV 255 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT-TTC-EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC-cEEcCCCcchHHHHHHHHhCCCCC
Confidence 4567899999999 99987 8888888775 43489999999999999875 332 3332111111 1 012369
Q ss_pred cEEEecccCcCC--------CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMP--------FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~--------~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+-... .++..++++..+.|+|||++++.
T Consensus 256 Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 256 DCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 999976553210 12346789999999999999873
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.66 E-value=8.5e-05 Score=67.36 Aligned_cols=53 Identities=11% Similarity=-0.078 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY 158 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~ 158 (274)
..++++.... .+++.|| ++||||.++..+++.+ .+++|+|++++|++.|+++.
T Consensus 224 l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 224 LAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp HHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHH
Confidence 5567776665 6889999 9999999999988877 49999999999999999874
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.62 E-value=8.3e-05 Score=68.26 Aligned_cols=96 Identities=5% Similarity=-0.008 Sum_probs=69.5
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
..+...++.+|++|| +|+|+ |.++..+++....+|+++|.+++-++.+++. ..-..+ .|.+.+. +.+|+|+-+
T Consensus 167 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~~v~-~~~~~~~---~~~D~vid~ 241 (348)
T 3two_A 167 SPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSM-GVKHFY-TDPKQCK---EELDFIIST 241 (348)
T ss_dssp HHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHT-TCSEEE-SSGGGCC---SCEEEEEEC
T ss_pred HHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc-CCCeec-CCHHHHh---cCCCEEEEC
Confidence 344556899999999 99887 7777777775335999999999999988773 322223 4444442 289999976
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+-. ..+....+.|+|||++++.
T Consensus 242 ~g~~------~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 242 IPTH------YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp CCSC------CCHHHHHTTEEEEEEEEEC
T ss_pred CCcH------HHHHHHHHHHhcCCEEEEE
Confidence 5431 2466777889999999984
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00046 Score=63.35 Aligned_cols=98 Identities=8% Similarity=-0.059 Sum_probs=68.0
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-ccCCC------CC---CC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-LIYVP------DK---WG 176 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-ae~LP------f~---~~ 176 (274)
++..++.+|++|| +|+|+ |.++..+++....+|+++|.+++-++.+++-..+ ..+.-+ .+++. .. ..
T Consensus 161 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-VTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-EEEcCcccccHHHHHHHHhccccCC
Confidence 4566889999999 99876 7777777775334799999999999999864322 222211 01111 01 25
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-+.+- ...+++..+.|+|||++++.
T Consensus 240 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGN------EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 69999976442 35678888999999999884
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00037 Score=64.18 Aligned_cols=98 Identities=15% Similarity=0.016 Sum_probs=68.6
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCC-CCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVP-DKWGP 177 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LP-f~~~s 177 (274)
++..++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.+++.-.+ ..+..+ .+++. ..+..
T Consensus 164 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 164 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-LVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-EEEECSSCCHHHHHHHHHHHHTSC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEEcCcccccchHHHHHHHHhCCC
Confidence 4566889999999 99986 888888877643 4899999999999998854322 222211 01111 01157
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+- ...+.+..+.|+|||++++.
T Consensus 243 ~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGA------EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCC------hHHHHHHHHHhcCCCEEEEE
Confidence 9999966442 35678888999999999884
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00023 Score=66.45 Aligned_cols=103 Identities=10% Similarity=-0.070 Sum_probs=71.9
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccCCC--CCCCCc
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIYVP--DKWGPL 178 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~LP--f~~~sF 178 (274)
+...++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.|++- .. ..+.-. .+.+. .....+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l-Ga-~~i~~~~~~~~~~~v~~~t~g~g~ 255 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ-GF-EIADLSLDTPLHEQIAALLGEPEV 255 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT-TC-EEEETTSSSCHHHHHHHHHSSSCE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc-CC-cEEccCCcchHHHHHHHHhCCCCC
Confidence 4457889999999 99887 888888877643 4799999999999999763 22 222211 11111 012479
Q ss_pred cEEEecccCc---------CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPA---------MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~---------~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+-. +..++..++++..+.|++||++++.
T Consensus 256 Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 256 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 9999765432 2235567899999999999999873
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00015 Score=66.17 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC----CCCCCCccE
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV----PDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L----Pf~~~sFD~ 180 (274)
..++..++.+|++|| .|+|+ |.++..+++....+|+++|.+++-++.+++.-.+ ..+..+-+++ -...+.+|+
T Consensus 157 ~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~~~~~~~g~~d~ 235 (340)
T 3s2e_A 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE-VAVNARDTDPAAWLQKEIGGAHG 235 (340)
T ss_dssp HHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHHSSEEE
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC-EEEeCCCcCHHHHHHHhCCCCCE
Confidence 345667899999999 99986 8888888776335999999999999998774322 1221111111 001236899
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ...++...+.|+|||++++.
T Consensus 236 vid~~g~------~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 236 VLVTAVS------PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEeCCC------HHHHHHHHHHhccCCEEEEe
Confidence 9866431 46788889999999999884
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00023 Score=65.82 Aligned_cols=99 Identities=9% Similarity=-0.010 Sum_probs=69.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEe---ec-cCCC-CCCCCcc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQG---EL-IYVP-DKWGPLD 179 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---Da-e~LP-f~~~sFD 179 (274)
+.+..++.++++|| +|+|+ |.++..+++. +..+|+++|.+++-++.+++.-.+ ..+.. |. +.+. ..++.+|
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~~~~~gg~D 260 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT-HVINSKTQDPVAAIKEITDGGVN 260 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTSCEE
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC-EEecCCccCHHHHHHHhcCCCCc
Confidence 33567889999999 99987 8888787775 434799999999999999764322 12221 11 1111 1123799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ...+++..+.|+|||++++.
T Consensus 261 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 261 FALESTGS------PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEEECSCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEe
Confidence 99966542 36788899999999999883
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=65.89 Aligned_cols=110 Identities=9% Similarity=0.019 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHH--HHHHHHHhCCCc---eEEEe-eccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLF--VLAGIKEKYDTV---KCWQG-ELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~--ML~~Ar~k~~~v---~~~~g-Dae~LPf~~ 175 (274)
++.++-+..-++++.+|| +||+.|--+.+.+++.. +.|.|.++... +.... -..+++ .|.+| |+.+++ .
T Consensus 61 KL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~-~~~~Gv~~i~~~~G~Df~~~~--~ 137 (269)
T 2px2_A 61 KLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML-MQSYGWNIVTMKSGVDVFYKP--S 137 (269)
T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCC-CCSTTGGGEEEECSCCGGGSC--C
T ss_pred HHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCc-ccCCCceEEEeeccCCccCCC--C
Confidence 555666665678999999 99999999999887622 34444444432 11000 001344 44557 998864 5
Q ss_pred CCccEEEecccCcCCCC----HH---HHHHHHHHhcCCCC-EEEEEcCCC
Q 023974 176 GPLDVVFLYFLPAMPFP----LD---QVFETLANRCSPGA-RVVISHPQG 217 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d----~~---~al~el~RvLKPGG-rlvIs~~~g 217 (274)
..+|+|+|=.++. ..+ .. .||.=+.++||||| -|++--.++
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 6899999887774 332 22 24544569999999 999844444
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00083 Score=62.52 Aligned_cols=134 Identities=9% Similarity=-0.007 Sum_probs=86.7
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC--------------------------CCceEEEee
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY--------------------------DTVKCWQGE 167 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~--------------------------~~v~~~~gD 167 (274)
+...|+ +|||......+|...++ .+++-||+ |++++.-++.. ++..++-+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 456788 99999999999987644 68899999 88877655431 346778888
Q ss_pred ccCCCC---------CCCCccEEEecccCcCCCCHH---HHHHHHHHhcCCCCEEEEEcCCCh------h--HH-HHHHh
Q 023974 168 LIYVPD---------KWGPLDVVFLYFLPAMPFPLD---QVFETLANRCSPGARVVISHPQGR------E--AL-QKQRK 226 (274)
Q Consensus 168 ae~LPf---------~~~sFD~V~~~f~l~~~~d~~---~al~el~RvLKPGGrlvIs~~~gr------~--~l-~~~~~ 226 (274)
+.+... ..+...++++-.++..+ +++ +.++.+.+.. |||.+++.+.... . .+ ..+..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~ 253 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQSNLKE 253 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-CHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHHHHhhc
Confidence 876321 22455666766777665 343 4455555555 8888876432211 1 11 11111
Q ss_pred -h-CcccccccCCCHHHHHHHHHhCCCc
Q 023974 227 -Q-FPDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 227 -~-~~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
. -.-.+...+|+.++..+.++++||+
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1 1112445789999999999999997
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00072 Score=62.18 Aligned_cols=100 Identities=11% Similarity=-0.075 Sum_probs=70.6
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEe------ec-cCCC--CCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQG------EL-IYVP--DKW 175 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~g------Da-e~LP--f~~ 175 (274)
.++..++.+|++|| .|+|+ |.++..+++... ..|+++|.+++-++.+++..+.+.-... |. +++- ...
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp HHHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 34667899999999 99877 777778877643 4599999999999999987323321221 11 1110 124
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- ...+....+.|+|||++++.
T Consensus 251 ~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALECTGV------ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEE
Confidence 579999976442 35788888999999999984
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00015 Score=68.30 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCCCC------CCeEE-EEcCchHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHh--CCCceEEEeeccC
Q 023974 101 HIQRIDQIISAGEIDE------SSKVL-VSISSEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEK--YDTVKCWQGELIY 170 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~------~~rVL-vGcGTG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k--~~~v~~~~gDae~ 170 (274)
+...++++++.+++.+ +..|| ||.|+|.++..|+++. +.+|++|++.+.++...++. .++++++.+|+.+
T Consensus 37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 3447889999888864 58999 9999999999999863 36899999999999999876 4679999999955
Q ss_pred C
Q 023974 171 V 171 (274)
Q Consensus 171 L 171 (274)
+
T Consensus 117 ~ 117 (353)
T 1i4w_A 117 W 117 (353)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=63.90 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=69.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sF 178 (274)
.++..++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.+++--.+ ..+.-+-+++. .....+
T Consensus 158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~v~~~t~g~g~ 236 (352)
T 3fpc_A 158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-DIINYKNGDIVEQILKATDGKGV 236 (352)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-EEECGGGSCHHHHHHHHTTTCCE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-eEEcCCCcCHHHHHHHHcCCCCC
Confidence 35678899999999 99887 777777777543 4899999999999988875332 12211111111 123479
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ..++.+..+.|+|||++++.
T Consensus 237 D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 237 DKVVIAGGD------VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp EEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC------hHHHHHHHHHHhcCCEEEEe
Confidence 999965432 24688888899999999873
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00024 Score=59.58 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=63.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCC
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGP 177 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~s 177 (274)
+..++.++++|| .|+ |.|..+..+++ .+ .+|+++|.+++.++.+++. . .... .|..+-. .....
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G-~~V~~~~~~~~~~~~~~~~-g-~~~~-~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKREMLSRL-G-VEYV-GDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHTT-C-CSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-C-CCEE-eeCCcHHHHHHHHHHhCCCC
Confidence 446888999999 884 44666555554 35 5899999999999888653 2 1111 1221110 11246
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+.+.+ ...++++.+.|+|||++++.
T Consensus 108 ~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 108 VDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp EEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred CeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 999997654 15688889999999999884
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00015 Score=68.28 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC--CCceEEEeeccCCCC----C-
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY--DTVKCWQGELIYVPD----K- 174 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~--~~v~~~~gDae~LPf----~- 174 (274)
++++++.+.+.+|..++ ..||+|--+..++++ ++ ++|+|+|.++++|+.|+ +. .++++++++..++.. .
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~~g 124 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAERD 124 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHhcC
Confidence 67889999999999999 999999999998887 56 89999999999999995 53 358899999888641 1
Q ss_pred -CCCccEEEecccCc--CCCCHHHHHH
Q 023974 175 -WGPLDVVFLYFLPA--MPFPLDQVFE 198 (274)
Q Consensus 175 -~~sFD~V~~~f~l~--~~~d~~~al~ 198 (274)
.+++|.|+...+.- .++++++.|.
T Consensus 125 ~~~~vDgILfDLGVSS~QlD~~eRGFS 151 (347)
T 3tka_A 125 LIGKIDGILLDLGVSSPQLDDAERGFS 151 (347)
T ss_dssp CTTCEEEEEEECSCCHHHHHCGGGCCC
T ss_pred CCCcccEEEECCccCHHHhcCCCCCCC
Confidence 13799999765543 2235555544
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00017 Score=67.09 Aligned_cols=96 Identities=7% Similarity=0.032 Sum_probs=66.9
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe---e-ccCCCCCCCCccEE
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG---E-LIYVPDKWGPLDVV 181 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---D-ae~LPf~~~sFD~V 181 (274)
.+...++++|++|| +|+|+ |.++..+++....+|+++|.|++-++.+++- ..-..+.- | ++++. +.+|+|
T Consensus 186 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~---~g~Dvv 261 (369)
T 1uuf_A 186 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL-GADEVVNSRNADEMAAHL---KSFDFI 261 (369)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH-TCSEEEETTCHHHHHTTT---TCEEEE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCcEEeccccHHHHHHhh---cCCCEE
Confidence 34456889999999 99986 7777777775335799999999999988863 22222211 1 22232 579999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+-. .++++..+.|+|||++++.
T Consensus 262 id~~g~~------~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 262 LNTVAAP------HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EECCSSC------CCHHHHHTTEEEEEEEEEC
T ss_pred EECCCCH------HHHHHHHHHhccCCEEEEe
Confidence 9765431 2466777899999999873
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00053 Score=63.77 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCCCCCeEE-EEc------CchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEE
Q 023974 112 GEIDESSKVL-VSI------SSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVF 182 (274)
Q Consensus 112 ~~~~~~~rVL-vGc------GTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~ 182 (274)
+.++-|.+|| +|+ -+|.. .|.+.+| +.|+++|+.+-- ...+ .+++||...+.. .++||+|+
T Consensus 105 ~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~------sda~-~~IqGD~~~~~~-~~k~DLVI 174 (344)
T 3r24_A 105 LAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV------SDAD-STLIGDCATVHT-ANKWDLII 174 (344)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB------CSSS-EEEESCGGGEEE-SSCEEEEE
T ss_pred EeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc------cCCC-eEEEcccccccc-CCCCCEEE
Confidence 3567889999 996 45663 4444455 399999998621 0122 559999877554 58999999
Q ss_pred ecccCcCCC-----C------HHHHHHHHHHhcCCCCEEEEEcCCCh
Q 023974 183 LYFLPAMPF-----P------LDQVFETLANRCSPGARVVISHPQGR 218 (274)
Q Consensus 183 ~~f~l~~~~-----d------~~~al~el~RvLKPGGrlvIs~~~gr 218 (274)
+=.++...- . -+.|+.=+.++|||||-|++--++|.
T Consensus 175 SDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 175 SDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp ECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred ecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 765543311 1 23455556778999999999545543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00051 Score=63.80 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=69.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE---eec----cC-CCCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL----IY-VPDKWG 176 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa----e~-LPf~~~ 176 (274)
.++..++++|++|| +|+|. |.++..+++... .+|+++|.+++-++.+++---. ..+. .|. .+ ....++
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~i~~~~~~~~g 252 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT-ATVDPSAGDVVEAIAGPVGLVPG 252 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-EEECTTSSCHHHHHHSTTSSSTT
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-EEECCCCcCHHHHHHhhhhccCC
Confidence 34667899999999 99876 777777777643 4899999999999988874322 1111 121 11 002234
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-+.+- ...+++..+.|+|||++++.
T Consensus 253 g~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 253 GVDVVIECAGV------AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp CEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCC------HHHHHHHHHHhccCCEEEEE
Confidence 89999966432 35788899999999999984
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00063 Score=61.73 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=65.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC---C----C-CCCCCc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY---V----P-DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~---L----P-f~~~sF 178 (274)
+..++.++++|| .|+ |.|..+..+++....+|+++|.+++.++.+++ ...-.. .|..+ + . ...+.+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g~~~~--~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IGFDAA--FNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEE--EETTSCSCHHHHHHHHCTTCE
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCcEE--EecCCHHHHHHHHHHHhCCCC
Confidence 557889999999 998 45666666665433599999999999998844 432111 23221 0 0 012579
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+.+.+- ..+++..+.|+|||++++.
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 216 DCYFDNVGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp EEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred eEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence 999987652 3578888999999999873
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=60.21 Aligned_cols=99 Identities=8% Similarity=0.063 Sum_probs=66.6
Q ss_pred HHHhCCCCCCCeEE-EEcC--chHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCC
Q 023974 108 IISAGEIDESSKVL-VSIS--SEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcG--TG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~s 177 (274)
.+...++.++++|| .|+| .|..+..+++.. ..+|+++|.+++.++.+++--.+..+-..| +.++. ..+.
T Consensus 162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 240 (347)
T 1jvb_A 162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRIT-ESKG 240 (347)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT-TTSC
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHh-cCCC
Confidence 34457889999999 9988 466666665543 358999999999999887642221111111 11111 1147
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|+|||++++.
T Consensus 241 ~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 241 VDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp EEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred ceEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 9999977553 35788889999999999883
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=60.57 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=81.0
Q ss_pred CeEE-EEcCchHHHHH----HHHhCC-C--cEEEEeC------------cHHHHHHHHHhCCC-------ceEEEeeccC
Q 023974 118 SKVL-VSISSEEFVDR----VVESSP-S--LLLVVHD------------SLFVLAGIKEKYDT-------VKCWQGELIY 170 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~----L~~~~~-~--~V~gVD~------------S~~ML~~Ar~k~~~-------v~~~~gDae~ 170 (274)
=+|| +|-|||-.+.. +.+..+ . +++.+|- -.+..+...++.+. ++++.||+.+
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 4799 99999965432 223344 3 4566663 22333334444432 4678899966
Q ss_pred -CCC-CCCCccEEEec-ccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHH
Q 023974 171 -VPD-KWGPLDVVFLY-FLPAMPFPL--DQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKA 245 (274)
Q Consensus 171 -LPf-~~~sFD~V~~~-f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~l 245 (274)
||. .+..||+|+.= |++.-.++. +++|+.|+|.++|||+|+-- .. ...+++.
T Consensus 178 ~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY-ta----------------------ag~VRR~ 234 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY-SS----------------------SLSVRKS 234 (308)
T ss_dssp HGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES-CC----------------------CHHHHHH
T ss_pred HHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE-eC----------------------cHHHHHH
Confidence 553 34589999875 676553221 48999999999999998732 11 1356778
Q ss_pred HHhCCCcEeEEEecC-CeEEEEEEec
Q 023974 246 AGNHCFQIDNFVDES-GFYLVVLKFS 270 (274)
Q Consensus 246 l~~aGF~~v~~~d~~-~~yl~v~~~~ 270 (274)
|+++||++....--. ..=++++.++
T Consensus 235 L~~aGF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 235 LLTLGFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp HHHTTCEEEEEECC---CEEEEEESS
T ss_pred HHHCCCEEEecCCCCCCCceeEEecC
Confidence 899999876654421 2245555543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00084 Score=60.98 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=68.0
Q ss_pred HHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~ 180 (274)
.+..++.+|++|| .|+ |.|..+..+++....+|+++|.+++-++.+.+++..-..+...-+++. ...+.+|+
T Consensus 142 ~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 221 (336)
T 4b7c_A 142 LDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDV 221 (336)
T ss_dssp HHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred HHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceE
Confidence 3677899999999 888 447777777665335999999999999988555543222211111110 01357999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..+....+.|+|||++++.
T Consensus 222 vi~~~g~-------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 222 FFDNVGG-------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred EEECCCc-------chHHHHHHHHhhCCEEEEE
Confidence 9976552 3788889999999999983
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00052 Score=63.44 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=66.6
Q ss_pred HhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEE
Q 023974 110 SAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V 181 (274)
+..++++|++|| +|+|+ |.++..+++....+|+++|.+++-++.+++--.+ ..+.-+.+++. .....+|+|
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD-HGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC-EEEcCCcccHHHHHHHHhCCCCceEE
Confidence 567889999999 99887 7777777775336999999999999998774322 22221111111 123479999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ..+.+..+.|+|||++++.
T Consensus 262 id~~g~-------~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 262 LEIAGG-------AGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp EEETTS-------SCHHHHHHHEEEEEEEEEE
T ss_pred EECCCh-------HHHHHHHHHhhcCCEEEEE
Confidence 977652 2456667789999999984
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0024 Score=58.02 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=66.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCch-HHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEE--Eeec-cCCC--CCCCCc
Q 023974 107 QIISAGEIDESSKVL-VSISSE-EFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCW--QGEL-IYVP--DKWGPL 178 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG-~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~--~gDa-e~LP--f~~~sF 178 (274)
..++..++.+|++|| +|+|++ -++..+++. +..+|+++|.+++-++.+++......+- ..|. +++- .....+
T Consensus 154 ~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 154 KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred eeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCc
Confidence 345667889999999 999874 444445543 3479999999999888887754332211 1121 1111 123456
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|.++...+- ..++....+.|+|||++++.
T Consensus 234 d~~~~~~~~------~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 234 QSAIVCAVA------RIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp EEEEECCSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred eEEEEeccC------cchhheeheeecCCceEEEE
Confidence 777654322 46788889999999999883
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=61.48 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=68.1
Q ss_pred HHhCCCC-----CCCeEE-EE-cCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEE------eeccCCCC
Q 023974 109 ISAGEID-----ESSKVL-VS-ISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQ------GELIYVPD 173 (274)
Q Consensus 109 l~~~~~~-----~~~rVL-vG-cGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~------gDae~LPf 173 (274)
.+..++. +|++|| .| +|. |.++..+++. +..+|+++|.+++-++.+++- ..-..+. ..+.++
T Consensus 159 ~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~vi~~~~~~~~~v~~~-- 235 (363)
T 4dvj_A 159 FDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHHVIDHSKPLAAEVAAL-- 235 (363)
T ss_dssp HTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSEEECTTSCHHHHHHTT--
T ss_pred HHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHh--
Confidence 3556777 889999 87 655 8888888875 447999999999999998763 2211111 112222
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+.+|+|+-+.+ -...+.++.+.|+|||++++.
T Consensus 236 ~~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 236 GLGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CSCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred cCCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 3468999986543 245788889999999999984
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0018 Score=58.91 Aligned_cols=95 Identities=9% Similarity=0.075 Sum_probs=67.1
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC---CC-----CCCCCc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY---VP-----DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~---LP-----f~~~sF 178 (274)
+..++.+|++|| .|+ |.|..+..+++....+|+++|.+++-++.+++++..-..+ |..+ +. ...+.+
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAF--NYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEE--ETTSCSCSHHHHHHHCTTCE
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEE--ecCCHHHHHHHHHHHhCCCC
Confidence 557889999999 887 4577777776653359999999999999998665432222 2211 10 012469
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+.+.+- ..++...+.|+|||++++.
T Consensus 227 d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 227 DIYFENVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp EEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred cEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 999977542 3788889999999999883
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00053 Score=62.70 Aligned_cols=92 Identities=5% Similarity=-0.039 Sum_probs=64.8
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHhCCCceEEE----ee-ccCCCCCCCCccEEEe
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVESS--PSLLLVVHDSLFVLAGIKEKYDTVKCWQ----GE-LIYVPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k~~~v~~~~----gD-ae~LPf~~~sFD~V~~ 183 (274)
++ +|++|| +|+|+ |.++..+++.. ..+|+++|.|++-++.+++--.+ ..+. .| ++++. ....+|+|+-
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~-~g~g~D~vid 244 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-YVSEMKDAESLINKLT-DGLGASIAID 244 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-EEECHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-EEeccccchHHHHHhh-cCCCccEEEE
Confidence 77 999999 99976 77777777643 35899999999999998764322 2221 11 11222 1337999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+- ...++++.+.|+|||++++.
T Consensus 245 ~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 245 LVGT------EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp SSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCC------hHHHHHHHHHhhcCCEEEEe
Confidence 6542 35788889999999999873
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.002 Score=59.53 Aligned_cols=99 Identities=10% Similarity=0.026 Sum_probs=67.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeec--cCCC-----CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGEL--IYVP-----DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa--e~LP-----f~~~s 177 (274)
+.+..++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.+++- ..-..+.-+- +++. ..++.
T Consensus 184 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 184 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF-GATDFVNPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCceEEeccccchhHHHHHHHHhCCC
Confidence 34567889999999 99876 777777777643 4899999999999988753 3212221110 0110 11247
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ...+.+..+.|+|| |++++.
T Consensus 263 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 263 VDFSLECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 9999966442 35788889999999 999884
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00027 Score=63.85 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=64.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
..++..++++|++|| .|+|+ |.++..+++....+|+++| |++-++.+++--.+ ..+. |.+++ .+.+|+|+-+
T Consensus 133 ~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~-~v~~-d~~~v---~~g~Dvv~d~ 206 (315)
T 3goh_A 133 QAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVR-HLYR-EPSQV---TQKYFAIFDA 206 (315)
T ss_dssp HHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEE-EEES-SGGGC---CSCEEEEECC
T ss_pred HHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCC-EEEc-CHHHh---CCCccEEEEC
Confidence 334678899999999 99975 7777777775225999999 99888888764221 2222 44455 5789999965
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+-. .+.+..+.|+|||++++.
T Consensus 207 ~g~~-------~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 207 VNSQ-------NAAALVPSLKANGHIICI 228 (315)
T ss_dssp --------------TTGGGEEEEEEEEEE
T ss_pred CCch-------hHHHHHHHhcCCCEEEEE
Confidence 4321 235567899999999885
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00086 Score=62.41 Aligned_cols=99 Identities=9% Similarity=-0.078 Sum_probs=67.9
Q ss_pred HHHhCC-CCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee------c-cCCC--CC
Q 023974 108 IISAGE-IDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE------L-IYVP--DK 174 (274)
Q Consensus 108 ll~~~~-~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------a-e~LP--f~ 174 (274)
.+..++ +.+|++|| +|+|. |.++..+++... .+|+++|.+++-++.+++ +..-..+.-+ . +.+. ..
T Consensus 186 al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~v~~~~~ 264 (380)
T 1vj0_A 186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE-IGADLTLNRRETSVEERRKAIMDITH 264 (380)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH-TTCSEEEETTTSCHHHHHHHHHHHTT
T ss_pred HHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH-cCCcEEEeccccCcchHHHHHHHHhC
Confidence 345668 89999999 99775 777777777644 599999999999999885 3322222211 0 1111 11
Q ss_pred CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+|+|+-+.+- ...+++..+.|+|||++++.
T Consensus 265 g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 265 GRGADFILEATGD------SRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 2369999976542 24677888899999999873
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=61.02 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=68.7
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccCCC-----CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIYVP-----DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~LP-----f~~~s 177 (274)
+.+..++++|++|| +|+|+ |.++..+++. +..+|+++|.+++-++.|++--.+ ..+.-. -+++. ..++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~vi~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN-EFVNPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-EEEccccCchhHHHHHHHhcCCC
Confidence 44667899999999 99976 7777777775 434899999999999988753221 222111 01110 12347
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ..++....+.|+|| |++++.
T Consensus 264 ~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 264 VDYSFECIGN------VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCC------HHHHHHHHHHhhccCCEEEEE
Confidence 9999976442 46788899999997 999883
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0022 Score=59.26 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=67.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----cc-CCC-CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LI-YVP-DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae-~LP-f~~~s 177 (274)
+.+..++.+|++|| +|+|. |.++..+++... .+|+++|.+++-++.+++ +..-..+.-+ .. .+. ..++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 183 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCceEecccccchhHHHHHHHHhCCC
Confidence 34567889999999 99876 777777777543 489999999999998875 3322222111 10 010 11247
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|+|| |++++.
T Consensus 262 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 262 VDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp BSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred CcEEEECCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 9999966442 35688888999999 999883
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=59.85 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=66.1
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC------CCCccE
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK------WGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~------~~sFD~ 180 (274)
+...++.++++|| +|+|+ |.++..+++....+|+++|.+++-++.+++ +..-..+ |..+-.+. .+.+|+
T Consensus 157 l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~~~--d~~~~~~~~~~~~~~~~~d~ 233 (339)
T 1rjw_A 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-LGADLVV--NPLKEDAAKFMKEKVGGVHA 233 (339)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTCSEEE--CTTTSCHHHHHHHHHSSEEE
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-CCCCEEe--cCCCccHHHHHHHHhCCCCE
Confidence 4445788999999 99874 777777766533599999999999998875 3321111 21110000 046999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+. ...+++..+.|+|||++++.
T Consensus 234 vid~~g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 234 AVVTAVS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 9876542 35788888999999999873
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=59.79 Aligned_cols=98 Identities=18% Similarity=0.084 Sum_probs=66.7
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC--CCCCCc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP--DKWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP--f~~~sF 178 (274)
.++..++ +|++|| +|+|. |.++..+++.... +|+++|.+++-++.+++---+ ..+..+-++ +- .....+
T Consensus 160 ~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~-~~~~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 160 TVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD-YVINPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp HHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS-EEECTTTSCHHHHHHHHTTTSCE
T ss_pred HHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-EEECCCCcCHHHHHHHHcCCCCC
Confidence 3456778 999999 99975 7777777765434 899999999999888753221 122111111 10 012469
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. ...++++.+.|+|||++++.
T Consensus 238 D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 238 DVFLEFSGA------PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 999976542 35788889999999999873
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00054 Score=62.77 Aligned_cols=98 Identities=6% Similarity=-0.039 Sum_probs=67.1
Q ss_pred HHHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc---CCC-----CCC
Q 023974 107 QIISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI---YVP-----DKW 175 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae---~LP-----f~~ 175 (274)
..+...++.++++|| +|+ |.|..+..+++....+|+++|.+++.++.+++.... ..+ |.. ++. ..+
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~-~~~--d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE-VFI--DFTKEKDIVGAVLKATD 236 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC-EEE--ETTTCSCHHHHHHHHHT
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc-eEE--ecCccHhHHHHHHHHhC
Confidence 344556889999999 998 457777666664325999999999988888763222 111 322 110 011
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+.+.+. ...++++.+.|++||++++.
T Consensus 237 ~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 237 GGAHGVINVSVS------EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp SCEEEEEECSSC------HHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEE
Confidence 269999977552 35788999999999999884
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0014 Score=59.90 Aligned_cols=94 Identities=10% Similarity=0.028 Sum_probs=66.3
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeec---cCCC-C-CCCCccEEEec
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL---IYVP-D-KWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa---e~LP-f-~~~sFD~V~~~ 184 (274)
.+.++++|| +|+|+ |.++..+++. +..+|+++|.+++-++.+++--.+ ..+.-+- +++- . ....+|+|+-+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~v~~~t~g~g~d~v~d~ 246 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD-AAVKSGAGAADAIRELTGGQGATAVFDF 246 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS-EEEECSTTHHHHHHHHHGGGCEEEEEES
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC-EEEcCCCcHHHHHHHHhCCCCCeEEEEC
Confidence 788999999 99877 7777777775 347999999999999999764322 2222110 0010 0 12379999976
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- ...++...+.|+|||++++.
T Consensus 247 ~G~------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 247 VGA------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEE
Confidence 442 35788899999999999984
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0022 Score=59.29 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=67.8
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----cc-CCC-CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LI-YVP-DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae-~LP-f~~~s 177 (274)
+.+..++.+|++|| +|+|+ |.++..+++. +..+|+++|.+++-++.+++ +..-..+.-+ +. .+- ..++.
T Consensus 183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-lGa~~vi~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LGATECLNPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCcEEEecccccchHHHHHHHHhCCC
Confidence 34567889999999 99876 7777777765 43489999999999998875 3321222111 10 010 11247
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|+|| |++++.
T Consensus 262 ~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 262 VDYAVECAGR------IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCC------HHHHHHHHHHHhcCCCEEEEE
Confidence 9999966432 35788889999999 999873
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0048 Score=55.74 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred HHHHhCCCCCCCeEE-EE-cCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-CCCCCCCccEEE
Q 023974 107 QIISAGEIDESSKVL-VS-ISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vG-cGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
..++..++.+|++|| .| +|. |.++..+++....+|++++-+ +-++.+++--.+ ..+.-+-++ +...-..+|+|+
T Consensus 143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~~~~~~lGa~-~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNHAFLKALGAE-QCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHHHHHHHHTCS-EEEETTTSCHHHHCCSCEEEEE
T ss_pred HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chHHHHHHcCCC-EEEeCCCcchhhhhccCCCEEE
Confidence 334678999999999 75 665 777777777533589999854 447777764322 222211111 111125799999
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-+.+- ..+.+..+.|+|||+++..
T Consensus 221 d~~g~-------~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 221 DLVGG-------DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp ESSCH-------HHHHHHGGGEEEEEEEEEC
T ss_pred ECCCc-------HHHHHHHHhccCCCEEEEe
Confidence 66442 2347888999999999985
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=59.08 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=67.6
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEe-e----cc-CCC-CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQG-E----LI-YVP-DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g-D----ae-~LP-f~~~s 177 (274)
+.+..++.+|++|| +|+|+ |.++..+++. +..+|+++|.+++-++.+++---+ ..+.- + +. .+. ..++.
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 182 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-ECINPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-EEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-eEeccccccccHHHHHHHHhCCC
Confidence 34567889999999 99876 7777777765 424799999999999888754222 12211 1 10 010 11247
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|+|| |++++.
T Consensus 261 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 261 VDYSFECIGN------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCEEEECCCc------HHHHHHHHHhhccCCcEEEEE
Confidence 9999976442 35788889999999 999883
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0026 Score=58.85 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEee-----cc-CCC-CCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LI-YVP-DKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae-~LP-f~~~s 177 (274)
+.+..++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.+++- ..-..+.-+ +. .+. ..++.
T Consensus 187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~v~~~~~~g 265 (376)
T 1e3i_A 187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL-GATDCLNPRELDKPVQDVITELTAGG 265 (376)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-TCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCcEEEccccccchHHHHHHHHhCCC
Confidence 34567889999999 99876 777777777643 4899999999999888753 321222111 10 010 01237
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|+|| |++++.
T Consensus 266 ~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 266 VDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp BSEEEESSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred ccEEEECCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 9999966432 35788889999999 999873
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0012 Score=60.26 Aligned_cols=99 Identities=7% Similarity=-0.097 Sum_probs=65.6
Q ss_pred HHHHhCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCC
Q 023974 107 QIISAGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~s 177 (274)
.+.+..++++|++|| .|+| .|.++..+++....+|+++|.+++-++.+++.-.+. .+.-+-+++. .....
T Consensus 135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~-~~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAY-VIDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE-EEETTTSCHHHHHHHHTTTSC
T ss_pred HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcE-EEeCCcccHHHHHHHHhCCCC
Confidence 445678899999999 9987 477777776642259999999999888888743221 2211111110 12347
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+- ..+.+..+.|+|||++++.
T Consensus 214 ~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 214 ADAAIDSIGG-------PDGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp EEEEEESSCH-------HHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEECCCC-------hhHHHHHHHhcCCCEEEEE
Confidence 9999976543 2234455899999999884
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0028 Score=58.06 Aligned_cols=95 Identities=6% Similarity=0.022 Sum_probs=66.5
Q ss_pred HhCCCCCC--CeEE-EEc--CchHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-------CCCC
Q 023974 110 SAGEIDES--SKVL-VSI--SSEEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-------DKWG 176 (274)
Q Consensus 110 ~~~~~~~~--~rVL-vGc--GTG~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-------f~~~ 176 (274)
+..++.++ ++|| .|+ |.|..+..+++.... +|+++|.+++-++.+++.+..-..+ |..+-. ...+
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~--d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAI--NYKKDNVAEQLRESCPA 229 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEE--ETTTSCHHHHHHHHCTT
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEE--ecCchHHHHHHHHhcCC
Confidence 66788999 9999 887 446666666665334 9999999999888888755432222 221100 0112
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-+.+ ...++...+.|++||++++.
T Consensus 230 ~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 230 GVDVYFDNVG-------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp CEEEEEESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCEEEECCC-------HHHHHHHHHHhccCcEEEEE
Confidence 7999997765 25788889999999999873
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=63.55 Aligned_cols=100 Identities=7% Similarity=-0.009 Sum_probs=65.4
Q ss_pred HHHhCCCC-CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEe
Q 023974 108 IISAGEID-ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 108 ll~~~~~~-~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~ 183 (274)
.+...++. +|++|| +|+|. |.++..+++....+|+++|.+++-++.+++++..-..+. .|.+.+-...+.+|+|+-
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEE
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEE
Confidence 34456788 999999 99875 666666666422589999999998888886655322222 111111111246999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+-. ..++...+.|+|||++++.
T Consensus 251 ~~g~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 251 TVPVH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp CCCSC------CCSHHHHTTEEEEEEEEEC
T ss_pred CCCCh------HHHHHHHHHhccCCEEEEe
Confidence 65431 1345566789999999873
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00054 Score=62.01 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=54.9
Q ss_pred CceEEEeeccC-CC-CCCCCccEEEec--ccCcC------------------CCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 160 TVKCWQGELIY-VP-DKWGPLDVVFLY--FLPAM------------------PFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 160 ~v~~~~gDae~-LP-f~~~sFD~V~~~--f~l~~------------------~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.+++++||+.+ ++ +++++||+|+++ |.... ....+++++++.|+|||||.++|.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 46899999987 43 457899999998 43211 1123567889999999999999864421
Q ss_pred hhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 218 REALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 218 r~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
... . ..+.. ...+|-.+++..+++++||...
T Consensus 101 ~~~-~---~~~g~--~~~~~~~~~l~~~~~~~Gf~~~ 131 (297)
T 2zig_A 101 AVA-R---RRFGR--HLVFPLHADIQVRCRKLGFDNL 131 (297)
T ss_dssp EEE-C---C------EEEECHHHHHHHHHHHTTCEEE
T ss_pred ccc-c---ccCCc--ccccccHHHHHHHHHHcCCeee
Confidence 100 0 00000 0012334677778888888543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=60.85 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=65.5
Q ss_pred HHHhCCCC-CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eeccCCCCCCCCccEEEe
Q 023974 108 IISAGEID-ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 108 ll~~~~~~-~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDae~LPf~~~sFD~V~~ 183 (274)
.+...++. +|++|| +|+|. |.++..+++....+|+++|.+++-++.+++++..-..+. .+.+.+....+.+|+|+-
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEE
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEE
Confidence 34556777 999999 98875 666667766533589999999998888886665322221 111111111247999997
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+... .+++..+.|+|||+++..
T Consensus 258 ~~g~~~------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 258 TVSAVH------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CCSSCC------CSHHHHHHEEEEEEEEEC
T ss_pred CCCcHH------HHHHHHHHHhcCCEEEEE
Confidence 755321 244556679999999873
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0016 Score=59.10 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=64.6
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~ 180 (274)
+..++.+|++|| .|+ |.|.++..+++....+|+++|.+++-++.+++- ..-..+..+-+++. .....+|+
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-ga~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEY-GAEYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCSEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCcEEEeCCCchHHHHHHHHhCCCCceE
Confidence 345889999999 883 347777777665336999999999999988764 32222221111111 12357999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..++...+.|+|||++++.
T Consensus 221 vid~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 221 SFDSVGK-------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp EEECCGG-------GGHHHHHHHEEEEEEEEEC
T ss_pred EEECCCh-------HHHHHHHHHhccCCEEEEE
Confidence 9977653 3567777889999999983
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=59.91 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=65.1
Q ss_pred HH-hCCCCCCCeEE-EEcCc-hHHHHHHHHhCCC-cEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCcc
Q 023974 109 IS-AGEIDESSKVL-VSISS-EEFVDRVVESSPS-LLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLD 179 (274)
Q Consensus 109 l~-~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~-~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD 179 (274)
+. ..++ +|++|| +|+|. |.++..+++.... +|+++|.+++-++.+++- .-..+..+-+++. .....+|
T Consensus 157 l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a~~v~~~~~~~~~~~~~~~~~~g~D 233 (343)
T 2dq4_A 157 VYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--ADRLVNPLEEDLLEVVRRVTGSGVE 233 (343)
T ss_dssp HHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--CSEEECTTTSCHHHHHHHHHSSCEE
T ss_pred HHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--HHhccCcCccCHHHHHHHhcCCCCC
Confidence 44 6778 999999 99865 7777777775444 899999999888877653 2122211101110 0034699
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ...+++..+.|+|||++++.
T Consensus 234 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 234 VLLEFSGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 99976542 35688889999999999873
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0089 Score=54.17 Aligned_cols=99 Identities=10% Similarity=-0.007 Sum_probs=67.1
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEE---eeccC----CCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GELIY----VPDKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDae~----LPf~~~ 176 (274)
..+...++.++++|| .|+|+ |.++..+++. +...++++|.+++-++.|++--.. ..+. .|..+ +. ...
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~-~~i~~~~~~~~~~~~~~~-~~~ 228 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM-QTFNSSEMSAPQMQSVLR-ELR 228 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-EEEETTTSCHHHHHHHHG-GGC
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe-EEEeCCCCCHHHHHHhhc-ccC
Confidence 455667889999999 99887 5556566665 335789999999999988764322 2221 11111 11 235
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-..+- ...++...+.|+|||++++.
T Consensus 229 g~d~v~d~~G~------~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 229 FNQLILETAGV------PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SSEEEEECSCS------HHHHHHHHHHCCTTCEEEEC
T ss_pred Ccccccccccc------cchhhhhhheecCCeEEEEE
Confidence 68888865432 46778888899999999984
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0046 Score=57.05 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=66.0
Q ss_pred HhCCCCCCCeEE-EE--cCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC----CC-CCCCCccEE
Q 023974 110 SAGEIDESSKVL-VS--ISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY----VP-DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vG--cGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~----LP-f~~~sFD~V 181 (274)
+..++++|++|| .| .|.|.++..+++....+|+++|.+++-++.+++ +..-..+..+-++ +. .....+|+|
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~Ga~~~~~~~~~~~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEPVGTVLKQEYPEGVDVV 235 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-cCCcEEEecCChhHHHHHHHhcCCCCCEE
Confidence 456889999999 88 455888777777533589999999999988876 3321222111111 10 012479999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ..++.+.+.|+|||++++.
T Consensus 236 id~~g~-------~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 236 YESVGG-------AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp EECSCT-------HHHHHHHHHEEEEEEEEEC
T ss_pred EECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 977552 4788888999999999883
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00065 Score=62.60 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=65.1
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe----ec-cCCCCCCCCccE
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG----EL-IYVPDKWGPLDV 180 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g----Da-e~LPf~~~sFD~ 180 (274)
.+...++.+|++|| +|+|+ |.++..+++....+|+++|.+++-++.+++- ..-..+.- |. +.+. +.+|+
T Consensus 171 ~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~l-Ga~~v~~~~~~~~~~~~~~---~~~D~ 246 (360)
T 1piw_A 171 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM-GADHYIATLEEGDWGEKYF---DTFDL 246 (360)
T ss_dssp HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH-TCSEEEEGGGTSCHHHHSC---SCEEE
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CCCEEEcCcCchHHHHHhh---cCCCE
Confidence 34457889999999 99875 7777777664224899999999988888763 22222221 11 1121 57999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+-.. ...+++..+.|+|||++++.
T Consensus 247 vid~~g~~~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCASSLT----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECCSCST----TCCTTTGGGGEEEEEEEEEC
T ss_pred EEECCCCCc----HHHHHHHHHHhcCCCEEEEe
Confidence 997654300 12355667789999999873
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=57.79 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=63.7
Q ss_pred HhCCCCCC------CeEE-EEcCc-hHHH-HHHH-HhCCCc-EEEEeCcHH---HHHHHHHhCCCceEEEeeccCCCCC-
Q 023974 110 SAGEIDES------SKVL-VSISS-EEFV-DRVV-ESSPSL-LLVVHDSLF---VLAGIKEKYDTVKCWQGELIYVPDK- 174 (274)
Q Consensus 110 ~~~~~~~~------~rVL-vGcGT-G~l~-~~L~-~~~~~~-V~gVD~S~~---ML~~Ar~k~~~v~~~~gDae~LPf~- 174 (274)
+..++.+| ++|| +|+|+ |.++ ..++ +....+ |+++|.+++ -++.+++ +. ...+ |..+-.+.
T Consensus 160 ~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~-lG-a~~v--~~~~~~~~~ 235 (357)
T 2b5w_A 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE-LD-ATYV--DSRQTPVED 235 (357)
T ss_dssp HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH-TT-CEEE--ETTTSCGGG
T ss_pred HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH-cC-Cccc--CCCccCHHH
Confidence 44566788 9999 99866 7777 7777 543335 999999988 8888865 32 2222 22111000
Q ss_pred ----CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 175 ----WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ----~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+|+|+-+.+- ...+++..+.|+|||++++.
T Consensus 236 i~~~~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 236 VPDVYEQMDFIYEATGF------PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp HHHHSCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred HHHhCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEE
Confidence 2379999866442 34688889999999999883
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0018 Score=58.54 Aligned_cols=92 Identities=9% Similarity=-0.084 Sum_probs=63.2
Q ss_pred hCCCCCCCeEE-EE--cCchHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC------CC--CCCCCc
Q 023974 111 AGEIDESSKVL-VS--ISSEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY------VP--DKWGPL 178 (274)
Q Consensus 111 ~~~~~~~~rVL-vG--cGTG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~------LP--f~~~sF 178 (274)
..++.++++|| .| .|.|..+..+++. + .+|+++|.+++-++.+++.-... .+ |..+ +- .....+
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G-~~V~~~~~~~~~~~~~~~~g~~~-~~--~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKAQSALKAGAWQ-VI--NYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHTCSE-EE--ETTTSCHHHHHHHHTTTCCE
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHcCCCE-EE--ECCCccHHHHHHHHhCCCCc
Confidence 56889999999 88 3456666666554 5 59999999999998887632221 11 2211 10 113469
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+.+.+ ...++...+.|++||++++.
T Consensus 211 D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 211 RVVYDSVG-------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCc-------hHHHHHHHHHhcCCCEEEEE
Confidence 99998765 24577888899999999873
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0043 Score=56.75 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=65.5
Q ss_pred HHHhCCCC------CCCeEE-E-EcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe--e----ccCCC
Q 023974 108 IISAGEID------ESSKVL-V-SISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG--E----LIYVP 172 (274)
Q Consensus 108 ll~~~~~~------~~~rVL-v-GcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g--D----ae~LP 172 (274)
+.+..++. +|++|| . |+|. |.++..+++....+|+++|.+++-++.+++--.+ ..+.. | +.++
T Consensus 136 l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~- 213 (346)
T 3fbg_A 136 LFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD-IVLNHKESLLNQFKTQ- 213 (346)
T ss_dssp HHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS-EEECTTSCHHHHHHHH-
T ss_pred HHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-EEEECCccHHHHHHHh-
Confidence 34566777 899999 7 4554 6777777665335999999999999988874322 11111 1 1112
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
....+|+|+-+.+ -..++..+.+.|+|||+++.
T Consensus 214 -~~~g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 214 -GIELVDYVFCTFN------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp -TCCCEEEEEESSC------HHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCCccEEEECCC------chHHHHHHHHHhccCCEEEE
Confidence 2357999997543 24677888899999999976
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0044 Score=57.07 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=64.2
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCCc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~sF 178 (274)
+..+++++++|| .|+ |.|..+..+++....+|+++|.+++-++.+++.... ..+ |..+-. .....+
T Consensus 164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~~~--d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 164 HSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH-EVF--NHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred HhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC-EEE--eCCCchHHHHHHHHcCCCCc
Confidence 357889999999 987 446666666664335899999999998887653222 111 221111 112479
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+.+.+- ..+.+..+.|+|||++++.
T Consensus 241 D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 241 DIIIEMLAN-------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp EEEEESCHH-------HHHHHHHHHEEEEEEEEEC
T ss_pred EEEEECCCh-------HHHHHHHHhccCCCEEEEE
Confidence 999977652 3577888999999999884
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0087 Score=56.04 Aligned_cols=96 Identities=11% Similarity=-0.040 Sum_probs=62.6
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEE
Q 023974 112 GEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVF 182 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~ 182 (274)
.++.+|++|| +|+|+ |.++..+++... .+|+++|.+++-++.+++--.+ ..+..+-+++. .....+|+|+
T Consensus 209 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~i~~~t~g~g~D~vi 287 (404)
T 3ip1_A 209 GGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-HVIDPTKENFVEAVLDYTNGLGAKLFL 287 (404)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-EEECTTTSCHHHHHHHHTTTCCCSEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-EEEcCCCCCHHHHHHHHhCCCCCCEEE
Confidence 3789999999 99876 777777777644 4899999999999998765322 12211111110 1234799999
Q ss_pred ecccCcCCCCHHHHHHHHHHhc----CCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRC----SPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvL----KPGGrlvIs 213 (274)
-+.+- ....+..+.+.| +|||++++.
T Consensus 288 d~~g~-----~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 288 EATGV-----PQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp ECSSC-----HHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred ECCCC-----cHHHHHHHHHHHHhccCCCcEEEEe
Confidence 65432 223444444455 999999984
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0023 Score=58.56 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=65.6
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~ 180 (274)
+..++++|++|| .|+ |.|.++..+++....+|+++|.+++-++.+++.-.+ ..+.-+ +++. .....+|+
T Consensus 153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGAD-IVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-EEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-EEecCc-hhHHHHHHHHhCCCCceE
Confidence 567889999999 887 347777777765335999999999988888875322 222221 1111 12247999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..+.+..+.|+|||++++.
T Consensus 231 vid~~g~-------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 231 VVDPIGG-------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEESCC---------CHHHHHHTEEEEEEEEEC
T ss_pred EEECCch-------hHHHHHHHhhcCCCEEEEE
Confidence 9977553 2467778899999999984
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0026 Score=58.46 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=64.6
Q ss_pred HhCCCCCCCeEE-EE-cC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccEE
Q 023974 110 SAGEIDESSKVL-VS-IS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~rVL-vG-cG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~V 181 (274)
+..+++++++|| .| +| .|.++..+++....+|+++|.+++-++.+++.-.+. .+..+-+++. .....+|+|
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~-~~~~~~~~~~~~~~~~~~~g~Dvv 239 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKR-GINYRSEDFAAVIKAETGQGVDII 239 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSE-EEETTTSCHHHHHHHHHSSCEEEE
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCE-EEeCCchHHHHHHHHHhCCCceEE
Confidence 557889999999 74 33 477777776653359999999999999888743221 2211111110 013579999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ..+....+.|+|||++++.
T Consensus 240 id~~g~-------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 240 LDMIGA-------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp EESCCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred EECCCH-------HHHHHHHHHhccCCEEEEE
Confidence 977653 2567778899999999884
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.003 Score=57.21 Aligned_cols=97 Identities=12% Similarity=-0.061 Sum_probs=65.1
Q ss_pred HHhCCCCCCCeEE-EE-cC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCcc
Q 023974 109 ISAGEIDESSKVL-VS-IS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vG-cG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD 179 (274)
.+..++++|++|| .| +| .|.++..+++....+|+++|.+++-++.+++--.+ ..+..+-+++. .....+|
T Consensus 133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~-~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAW-ETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTCCEE
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCC-EEEeCCCccHHHHHHHHhCCCCce
Confidence 3456889999999 77 33 47777777664225999999999999988864322 12211111110 1235799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ..+....+.|+|||++++.
T Consensus 212 vvid~~g~-------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 212 VVYDGVGQ-------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp EEEESSCG-------GGHHHHHTTEEEEEEEEEC
T ss_pred EEEECCCh-------HHHHHHHHHhcCCCEEEEE
Confidence 99976553 3577788899999999984
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0044 Score=56.54 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=64.3
Q ss_pred CCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCCccE
Q 023974 112 GEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGPLDV 180 (274)
Q Consensus 112 ~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~sFD~ 180 (274)
.++.++++|| .|+ |.|.++..+++....+|+++|.+++-++.+++.-.. ..+ |..+-. .....+|+
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~-~~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGAD-ETV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCS-EEE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCC-EEE--cCCcccHHHHHHHHhCCCCceE
Confidence 5788999999 998 568887777765335999999999999988753222 122 221111 11247999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+ . ..++++.+.|+|||++++.
T Consensus 239 vi~~~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 239 VVDHTG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp EEESSC-S------SSHHHHHHHEEEEEEEEES
T ss_pred EEECCC-H------HHHHHHHHhhccCCEEEEE
Confidence 998766 2 2466777889999999883
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=55.86 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=63.9
Q ss_pred CCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------------
Q 023974 112 GEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---------------- 172 (274)
Q Consensus 112 ~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---------------- 172 (274)
.++.+|++|| .|+ | .|.++..+++....+|++++.+++-++.+++--.. ..+...-+++.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD-LVINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC-CEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC-EEEecccccccccccccccccchhhhH
Confidence 6889999999 887 3 37777777765436999999999999998653222 22221111110
Q ss_pred -------CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 173 -------DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 173 -------f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.....+|+|+-+.+- ..++...+.|++||++++.
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTGR-------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSCH-------HHHHHHHHHSCTTCEEEES
T ss_pred HHHHHHHHhCCCceEEEECCCc-------hHHHHHHHHHhcCCEEEEE
Confidence 013479999976542 3677888899999999983
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.004 Score=56.46 Aligned_cols=94 Identities=6% Similarity=-0.077 Sum_probs=64.2
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCCCCc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~~sF 178 (274)
+..++.++++|| .|+ |.|..+..+++....+|+++|.+++-++.+++..... .+ |..+-. .....+
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~-~~--d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHH-TI--NYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSE-EE--ETTTSCHHHHHHHHHTTCCE
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCE-EE--ECCCHHHHHHHHHHhCCCCC
Confidence 356889999999 884 5677777666653359999999999888887642221 11 221110 012469
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+.+.+- ..++...+.|+|||++++.
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 216 DVVYDSIGK-------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEEECSCT-------TTHHHHHHTEEEEEEEEEC
T ss_pred eEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 999977653 3467778889999999873
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0049 Score=56.66 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=63.2
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC------CC--CCCCCc
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY------VP--DKWGPL 178 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~------LP--f~~~sF 178 (274)
+..++.++++|| .|+ |.|..+..+++....+|+++|.+++-++.+++-..+. .+ |..+ +- .....+
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~-~~--~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAA-GF--NYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSE-EE--ETTTSCHHHHHHHHTTTSCE
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcE-EE--ecCChHHHHHHHHHhcCCCc
Confidence 456889999999 873 4466666666543359999999999998886542221 11 2111 10 112469
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+- ..+.+..+.|++||++++.
T Consensus 233 d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 233 NLILDCIGG-------SYWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp EEEEESSCG-------GGHHHHHHHEEEEEEEEEC
T ss_pred eEEEECCCc-------hHHHHHHHhccCCCEEEEE
Confidence 999977653 2467778889999999883
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0031 Score=56.43 Aligned_cols=92 Identities=18% Similarity=0.081 Sum_probs=61.6
Q ss_pred hCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-cCCCCCCCCccEEEeccc
Q 023974 111 AGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-IYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 111 ~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-e~LPf~~~sFD~V~~~f~ 186 (274)
.. +++|++|| +|+ |.|.++..+++....+|+++|.+++-++.+++ +..-..+.-+- +++...-+.+|+|+- .+
T Consensus 121 ~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~ga~~~~~~~~~~~~~~~~~~~d~vid-~g 197 (302)
T 1iz0_A 121 AQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-LGAEEAATYAEVPERAKAWGGLDLVLE-VR 197 (302)
T ss_dssp TT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-TTCSEEEEGGGHHHHHHHTTSEEEEEE-CS
T ss_pred hc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cCCCEEEECCcchhHHHHhcCceEEEE-CC
Confidence 44 88999999 887 44777777766533599999999998888865 33212221110 111100157999997 54
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
- ..++...+.|+|||++++
T Consensus 198 ~-------~~~~~~~~~l~~~G~~v~ 216 (302)
T 1iz0_A 198 G-------KEVEESLGLLAHGGRLVY 216 (302)
T ss_dssp C-------TTHHHHHTTEEEEEEEEE
T ss_pred H-------HHHHHHHHhhccCCEEEE
Confidence 3 256778889999999987
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0069 Score=55.37 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=64.6
Q ss_pred HhCCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccE
Q 023974 110 SAGEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDV 180 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~ 180 (274)
+..++.+|++|| +|+ | .|.++..+++....+|+++ .+++-++.+++.-.+. +. +-+++. .....+|+
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~--i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATP--ID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEE--EE-TTSCHHHHHHHHHTTSCEEE
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCE--ec-cCCCHHHHHHHHhcCCCceE
Confidence 667889999999 984 4 3777777776533599999 8888888887643222 22 211111 12347999
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+-+.+- ..+....+.|+|||++++.
T Consensus 220 vid~~g~-------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 220 VYDTLGG-------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp EEESSCT-------HHHHHHHHHEEEEEEEEES
T ss_pred EEECCCc-------HHHHHHHHHHhcCCeEEEE
Confidence 9976541 4678888899999999973
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0078 Score=54.14 Aligned_cols=97 Identities=10% Similarity=-0.034 Sum_probs=63.5
Q ss_pred HhCCCCCCC-eEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-CCCCCCccEEEec
Q 023974 110 SAGEIDESS-KVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-PDKWGPLDVVFLY 184 (274)
Q Consensus 110 ~~~~~~~~~-rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-Pf~~~sFD~V~~~ 184 (274)
...++.+++ +|| .|+ |.|.++..+++....+|+++|.|++-++.+++--.+.-+-..+...+ ....+.+|+|+-+
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEEC
Confidence 445566532 499 887 34788888877633599999999999998876432211111111111 1134579998865
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+ ...+.+..+.|+|||++++.
T Consensus 219 ~g-------~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 VG-------DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp SC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred CC-------cHHHHHHHHHHhcCCEEEEE
Confidence 43 13788999999999999984
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.01 Score=56.53 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=64.2
Q ss_pred CCCCCCCeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc-------------------
Q 023974 112 GEIDESSKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI------------------- 169 (274)
Q Consensus 112 ~~~~~~~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae------------------- 169 (274)
.++++|++|| +|+ | .|.++..+++....+|++++.+++=++.+++--.. ..+.-.-+
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~-~vi~~~~~d~~~~~~~~~~~~~~~~~~ 302 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE-AIIDRNAEGYRFWKDENTQDPKEWKRF 302 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC-EEEETTTTTCCSEEETTEECHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc-EEEecCcCcccccccccccchHHHHHH
Confidence 5789999999 887 4 37777777775436899999999999988764222 11111101
Q ss_pred --CCC--CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 170 --YVP--DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 170 --~LP--f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+- .....+|+|+-+.+ ...+....+.|+|||++++.
T Consensus 303 ~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 303 GKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 110 01257999986544 14678888899999999983
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.041 Score=43.69 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=65.0
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
..+|+ +|||. |.. +..|.+.+ ..|+++|.+++-++.+++ .++.++.||+.+.. ..-...|+|++...-.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~- 82 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG- 82 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH-
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh-
Confidence 35788 99986 443 33444445 589999999999988876 46778899986532 1225789988763221
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh
Q 023974 190 PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRK 226 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~ 226 (274)
.-...+-...|.+.|+.+++.. .......+.+++
T Consensus 83 --~~n~~~~~~a~~~~~~~~iiar-~~~~~~~~~l~~ 116 (140)
T 3fwz_A 83 --YEAGEIVASARAKNPDIEIIAR-AHYDDEVAYITE 116 (140)
T ss_dssp --HHHHHHHHHHHHHCSSSEEEEE-ESSHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCCeEEEE-ECCHHHHHHHHH
Confidence 1112244567788899987663 233334344443
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.01 Score=54.59 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=61.7
Q ss_pred hCCCC--C-------CCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcH---HHHHHHHHhCCCceEEEeeccCCCCC-
Q 023974 111 AGEID--E-------SSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSL---FVLAGIKEKYDTVKCWQGELIYVPDK- 174 (274)
Q Consensus 111 ~~~~~--~-------~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~---~ML~~Ar~k~~~v~~~~gDae~LPf~- 174 (274)
..+++ + |++|| +|+|. |.++..+++. + .+|+++|.++ +-++.+++- . ...+ | .+ .+.
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~~~~~~~~~~~~~~~-g-a~~v--~-~~-~~~~ 238 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYG-LEVWMANRREPTEVEQTVIEET-K-TNYY--N-SS-NGYD 238 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHT-CEEEEEESSCCCHHHHHHHHHH-T-CEEE--E-CT-TCSH
T ss_pred ccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCccchHHHHHHHHh-C-Ccee--c-hH-HHHH
Confidence 56777 7 99999 99854 5555566554 5 4999999998 777777653 2 2322 3 32 211
Q ss_pred -----CCCccEEEecccCcCCCCHHHHH-HHHHHhcCCCCEEEEE
Q 023974 175 -----WGPLDVVFLYFLPAMPFPLDQVF-ETLANRCSPGARVVIS 213 (274)
Q Consensus 175 -----~~sFD~V~~~f~l~~~~d~~~al-~el~RvLKPGGrlvIs 213 (274)
.+.+|+|+-+.+. ...+ ++..+.|+|||++++.
T Consensus 239 ~~~~~~~~~d~vid~~g~------~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 239 KLKDSVGKFDVIIDATGA------DVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp HHHHHHCCEEEEEECCCC------CTHHHHHHGGGEEEEEEEEEC
T ss_pred HHHHhCCCCCEEEECCCC------hHHHHHHHHHHHhcCCEEEEE
Confidence 1569999977553 1256 8889999999999874
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0039 Score=56.37 Aligned_cols=96 Identities=8% Similarity=0.013 Sum_probs=62.0
Q ss_pred HhCCCCCCC-eEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eec--cCC-CCCCCCccEE
Q 023974 110 SAGEIDESS-KVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GEL--IYV-PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~-rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDa--e~L-Pf~~~sFD~V 181 (274)
...++.+++ +|| .|+ |.|.++..+++....+|+++|.+++-++.+++ +..-..+. .+. +.+ ....+.+|+|
T Consensus 142 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~-lGa~~~i~~~~~~~~~~~~~~~~~~d~v 220 (328)
T 1xa0_A 142 EEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-LGAKEVLAREDVMAERIRPLDKQRWAAA 220 (328)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-TTCSEEEECC---------CCSCCEEEE
T ss_pred hhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-cCCcEEEecCCcHHHHHHHhcCCcccEE
Confidence 446788886 899 887 44777777776533589999999888888875 33211111 111 111 1123579999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ..+.+..+.|+|||++++.
T Consensus 221 id~~g~-------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 221 VDPVGG-------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred EECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 876542 1466777889999999873
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.015 Score=58.18 Aligned_cols=118 Identities=18% Similarity=0.249 Sum_probs=77.8
Q ss_pred CCeEE-EEcCchHHHHHHHHh-------CC------CcEEEEeC---cHHHHHHHHHh--------------CC------
Q 023974 117 SSKVL-VSISSEEFVDRVVES-------SP------SLLLVVHD---SLFVLAGIKEK--------------YD------ 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~-------~~------~~V~gVD~---S~~ML~~Ar~k--------------~~------ 159 (274)
.-+|| +|.|||.....+.+. .| .+++.++. +.+-|++|-+. +|
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 34889 999999765544221 11 46899998 77777664432 11
Q ss_pred ----------CceEEEeeccC-CCCC----CCCccEEEec-ccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHH
Q 023974 160 ----------TVKCWQGELIY-VPDK----WGPLDVVFLY-FLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREAL 221 (274)
Q Consensus 160 ----------~v~~~~gDae~-LPf~----~~sFD~V~~~-f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l 221 (274)
.++++.||+.+ ||.- ++.+|+++.- |.+.-.++ -.+.+..|+|+++|||++.-. .. .
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~-~~-~--- 213 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF-TA-A--- 213 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES-CC-C---
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec-cC-c---
Confidence 14678899865 4422 5789999975 55543222 158899999999999997642 21 1
Q ss_pred HHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 222 QKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 222 ~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
..+++.+.++||.+....
T Consensus 214 ------------------~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 214 ------------------GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ------------------HHHHHHHHHTTCEEEEEE
T ss_pred ------------------HHHHHHHHhCCeEEEecc
Confidence 356677888999877655
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.007 Score=53.58 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=45.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD 159 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~ 159 (274)
.++++++... .+|+.|| ..||+|..+.+..+.+ .+++|+|+++.+++.|+++..
T Consensus 201 l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHH
Confidence 4566666553 7889999 9999999988887777 499999999999999998854
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.012 Score=58.70 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=77.2
Q ss_pred CeEE-EEcCchHHHHHHHHh-------CC------CcEEEEeC---cHHHHHHHHHhCCC--------------------
Q 023974 118 SKVL-VSISSEEFVDRVVES-------SP------SLLLVVHD---SLFVLAGIKEKYDT-------------------- 160 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~-------~~------~~V~gVD~---S~~ML~~Ar~k~~~-------------------- 160 (274)
=+|| +|-|||-......+. .| -++++++. +.+.|+++-+.+|.
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 4789 999999664443221 11 46899998 99888865543221
Q ss_pred ----------ceEEEeeccC-CCCC----CCCccEEEec-ccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHHH
Q 023974 161 ----------VKCWQGELIY-VPDK----WGPLDVVFLY-FLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREALQ 222 (274)
Q Consensus 161 ----------v~~~~gDae~-LPf~----~~sFD~V~~~-f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l~ 222 (274)
++.+.||+.+ ||.- +..||+++.- |.+.-.++ -.+.|+.|+|.+||||++.-. .. .
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~-~~-~---- 221 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF-TS-A---- 221 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES-CC-C----
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec-cC-c----
Confidence 2467788866 4422 4789999975 66543222 258899999999999998742 11 1
Q ss_pred HHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE
Q 023974 223 KQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV 257 (274)
Q Consensus 223 ~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~ 257 (274)
..+++.++++||.+....
T Consensus 222 -----------------~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 222 -----------------GFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp -----------------HHHHHHHHHHTCEEEEEE
T ss_pred -----------------HHHHHHHHhCCeEEEecc
Confidence 255667778888766544
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0055 Score=55.39 Aligned_cols=96 Identities=7% Similarity=-0.021 Sum_probs=63.1
Q ss_pred HhCCCCCCC-eEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-eec--cCC-CCCCCCccEE
Q 023974 110 SAGEIDESS-KVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-GEL--IYV-PDKWGPLDVV 181 (274)
Q Consensus 110 ~~~~~~~~~-rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-gDa--e~L-Pf~~~sFD~V 181 (274)
...++.+++ +|| .|+ | .|.++..+++....+|+++|.+++-++.+++--.+ ..+. .|. +.+ ....+.+|+|
T Consensus 143 ~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~-~v~~~~~~~~~~~~~~~~~~~d~v 221 (330)
T 1tt7_A 143 EQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS-EVISREDVYDGTLKALSKQQWQGA 221 (330)
T ss_dssp HHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS-EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred HhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-EEEECCCchHHHHHHhhcCCccEE
Confidence 446788886 999 997 3 47777777664225899999998878888763222 1221 111 111 1123579999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-+.+- ..+.+..+.|+|||++++.
T Consensus 222 id~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 222 VDPVGG-------KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EESCCT-------HHHHHHHTTEEEEEEEEEC
T ss_pred EECCcH-------HHHHHHHHhhcCCCEEEEE
Confidence 876541 3688888999999999873
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0052 Score=57.01 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=56.9
Q ss_pred CeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCC---CCccEEEec
Q 023974 118 SKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKW---GPLDVVFLY 184 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~---~sFD~V~~~ 184 (274)
.+|| +.||+|-+...+...+- ..|.++|+++..++..++.+++..++++|+.++...+ ..+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 4799 99999999998888762 4799999999999999999999888999999875221 269999976
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.033 Score=45.82 Aligned_cols=91 Identities=11% Similarity=0.044 Sum_probs=59.6
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CC--CCCCccEEEecccC
Q 023974 117 SSKVL-VSISS-EEF-VDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PD--KWGPLDVVFLYFLP 187 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf--~~~sFD~V~~~f~l 187 (274)
+.+|+ +|||. |.. +..|.+. + ..|+++|.+++-++.+++. ++..+.||+.+. .. .-+.+|+|++...-
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~~--g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRSE--GRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHHT--TCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHHC--CCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 56899 98875 433 4455555 6 4899999999988887753 466778887542 11 13568999875321
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
......+-++.+.+.|+++++..
T Consensus 116 ---~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 116 ---HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ---HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 11223344567778888888774
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=54.86 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=57.4
Q ss_pred CeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC--------CCCCccEEEec
Q 023974 118 SKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD--------KWGPLDVVFLY 184 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf--------~~~sFD~V~~~ 184 (274)
-+|| +-||.|-+...+...+-..|.++|+++..++..+..+++..++++|+.++.. ....+|+|+..
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~gg 78 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGG 78 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEEC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEec
Confidence 3799 9999999998888777556789999999999999999999999999998752 24689999965
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.065 Score=41.25 Aligned_cols=90 Identities=7% Similarity=0.029 Sum_probs=56.9
Q ss_pred CeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCC
Q 023974 118 SKVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 118 ~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~ 190 (274)
.+|+ +|+|. |. ++..|.+.+ .+|+++|.+++-++.+++++ ++.++.+|..+.. ..-..+|+|++....
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~--- 79 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLEDAGIEDADMYIAVTGK--- 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC---
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc-CcEEEEcCCCCHHHHHHcCcccCCEEEEeeCC---
Confidence 5788 88765 32 233344444 58999999999888777655 4667778764321 123568999877322
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvIs 213 (274)
......+.++.+.+.++ ++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 80 EEVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp HHHHHHHHHHHHHTTCC-CEEEE
T ss_pred chHHHHHHHHHHHcCCC-EEEEE
Confidence 12334566777888885 55553
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.006 Score=57.23 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=57.9
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
++.+|+ +|+|. |..+..+++....+|+++|.+++-++.+++.+.. +.....+.+++...-...|+|+.+........
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t 246 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKA 246 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 468999 99976 5444444443225899999999998888775542 22211111112111135899997643211112
Q ss_pred HHHHHHHHHHhcCCCCEEEEE
Q 023974 193 LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs 213 (274)
+.-+.+++.+.+||||+++..
T Consensus 247 ~~li~~~~l~~mk~g~~iV~v 267 (377)
T 2vhw_A 247 PKLVSNSLVAHMKPGAVLVDI 267 (377)
T ss_dssp CCCBCHHHHTTSCTTCEEEEG
T ss_pred cceecHHHHhcCCCCcEEEEE
Confidence 222345667789999998763
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.022 Score=52.51 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=58.9
Q ss_pred CCCCCeEE-EE-cCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEe---ec-cCCCCCCCCccEEEeccc
Q 023974 114 IDESSKVL-VS-ISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQG---EL-IYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 114 ~~~~~rVL-vG-cGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~g---Da-e~LPf~~~sFD~V~~~f~ 186 (274)
+.+|++|| .| +|+ |.++..+++....+|++++ +++-++.+++ +..-..+.- |. +++. ....+|+|+-+.+
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~-lGa~~v~~~~~~~~~~~~~-~~~g~D~vid~~g 257 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK-LGADDVIDYKSGSVEEQLK-SLKPFDFILDNVG 257 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH-TTCSEEEETTSSCHHHHHH-TSCCBSEEEESSC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH-cCCCEEEECCchHHHHHHh-hcCCCCEEEECCC
Confidence 88999999 88 454 7777777765335899999 6666777754 332122211 11 1111 1247999997654
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
- ...++....+.|++||++++.
T Consensus 258 ~-----~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 258 G-----STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp T-----THHHHGGGGBCSSSCCEEEES
T ss_pred C-----hhhhhHHHHHhhcCCcEEEEe
Confidence 2 124567778899999999874
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.073 Score=48.82 Aligned_cols=135 Identities=9% Similarity=-0.008 Sum_probs=83.6
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--------CceEEEeeccC-----CC---CCCCCcc
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--------TVKCWQGELIY-----VP---DKWGPLD 179 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--------~v~~~~gDae~-----LP---f~~~sFD 179 (274)
..|+ ||||-=....++.. .. .+|+-||. |++++..++.+. +..++.+|+.+ +. +..+.-=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence 4688 99999877666642 22 58999995 899988776542 35778888875 10 1111222
Q ss_pred EEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh-h-H---HHHHH-hhCcc---------cccccCCC-HHH
Q 023974 180 VVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR-E-A---LQKQR-KQFPD---------VIVSDLPD-QMT 241 (274)
Q Consensus 180 ~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr-~-~---l~~~~-~~~~~---------~si~~fps-~~e 241 (274)
++++-.+++++. +..+.++.+...+.||+.|++.+.... . . ...+. +.+.. ......++ .++
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~ 261 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV 261 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHH
Confidence 344445666654 344677777787889999999754321 1 1 12121 22211 12233456 789
Q ss_pred HHHHHHhCCCcEe
Q 023974 242 LQKAAGNHCFQID 254 (274)
Q Consensus 242 L~~ll~~aGF~~v 254 (274)
+.+.+.+.||+.+
T Consensus 262 ~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 262 VADWLNRHGWRAT 274 (310)
T ss_dssp HHHHHTTTTEEEE
T ss_pred HHHHHHHCcCccc
Confidence 9999999999887
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.01 Score=55.25 Aligned_cols=97 Identities=9% Similarity=0.022 Sum_probs=55.2
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC-ceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT-VKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~-v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.+.+|+ +|+|. |..+..++.....+|+++|.+++-++.+++.... +.....+.+++...-..+|+|+.+.+......
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~ 244 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA 244 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence 347999 99865 4444444333225999999999988888765542 11111111112111136899987654321111
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023974 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
+.-+.+++.+.+||||+++.
T Consensus 245 ~~li~~~~l~~mk~gg~iV~ 264 (369)
T 2eez_A 245 PKLVTRDMLSLMKEGAVIVD 264 (369)
T ss_dssp -CCSCHHHHTTSCTTCEEEE
T ss_pred chhHHHHHHHhhcCCCEEEE
Confidence 12234667778999999876
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0058 Score=56.11 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=42.8
Q ss_pred CceEEEeeccC-CC-CCCCCccEEEec--ccCcC------------CCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 160 TVKCWQGELIY-VP-DKWGPLDVVFLY--FLPAM------------PFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 160 ~v~~~~gDae~-LP-f~~~sFD~V~~~--f~l~~------------~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
...+++||+.+ |. +++++||+|++. |.... ......+++++.|+|||||.++|.+.
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 46788999875 44 457899999987 54331 11367899999999999999999754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=55.00 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=56.3
Q ss_pred CCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 117 SSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+.+|| +|+|. |..+..++.. + .+|+++|.+++-++.+++... .+.....+.+++...-..+|+|+.+.+......
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G-a~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~ 245 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 245 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence 37999 99976 5444444443 5 499999999998888876542 222222221122111136899987644322111
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023974 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
+.-+.+++.+.+||||+++.
T Consensus 246 ~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 246 PILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CCCBCHHHHTTSCTTCEEEE
T ss_pred CeecCHHHHhhCCCCCEEEE
Confidence 11124556678999999887
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.11 Score=40.59 Aligned_cols=89 Identities=7% Similarity=0.006 Sum_probs=57.2
Q ss_pred CCeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
..+|+ +|||. |. ++..|.+.+ .+|+++|.+++-++.+++. .+.++.||+.+.. ..-..+|+|++... .
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~~--~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~--~ 80 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG-KKVLAVDKSKEKIELLEDE--GFDAVIADPTDESFYRSLDLEGVSAVLITGS--D 80 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHT--TCEEEECCTTCHHHHHHSCCTTCSEEEECCS--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHC--CCcEEECCCCCHHHHHhCCcccCCEEEEecC--C
Confidence 35788 99875 32 333444445 5899999999998888764 4778889886532 12356899987644 1
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+.........|-+. .++++.
T Consensus 81 -~~~n~~~~~~a~~~~-~~~iia 101 (141)
T 3llv_A 81 -DEFNLKILKALRSVS-DVYAIV 101 (141)
T ss_dssp -HHHHHHHHHHHHHHC-CCCEEE
T ss_pred -HHHHHHHHHHHHHhC-CceEEE
Confidence 122344555666666 566655
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.15 Score=48.47 Aligned_cols=91 Identities=8% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCeEE-EEcCc-hHHHH-HHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISS-EEFVD-RVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l~~-~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
+.+|+ +|+|. |..+. .|.+.+ ..|++||.+++.++.+++. ++.++.||+.+.- ..-+..|+|++... .
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~--g~~vi~GDat~~~~L~~agi~~A~~viv~~~--~ 78 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF--GMKVFYGDATRMDLLESAGAAKAEVLINAID--D 78 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT--TCCCEESCTTCHHHHHHTTTTTCSEEEECCS--S
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhC--CCeEEEcCCCCHHHHHhcCCCccCEEEECCC--C
Confidence 45788 99876 43333 333334 5899999999999998863 4677899987742 22367899987642 1
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
......+..++|-+.|..++++-
T Consensus 79 -~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 79 -PQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp -HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -hHHHHHHHHHHHHhCCCCeEEEE
Confidence 12334556778889999888774
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.06 Score=49.36 Aligned_cols=92 Identities=8% Similarity=0.083 Sum_probs=60.4
Q ss_pred CCCCCCCeEE-EEcCc-hHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEee------ccCCCCCCCCccEEE
Q 023974 112 GEIDESSKVL-VSISS-EEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGE------LIYVPDKWGPLDVVF 182 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGT-G~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD------ae~LPf~~~sFD~V~ 182 (274)
.++.+|++|| +|+|. |.++..+++.. ..+|+++|.+++=++.+++ +..-..+.-+ +.++. ....+|+|+
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~v~~~~-~g~g~Dvvi 259 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-LGADHVVDARRDPVKQVMELT-RGRGVNVAM 259 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-TTCSEEEETTSCHHHHHHHHT-TTCCEEEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCEEEeccchHHHHHHHHh-CCCCCcEEE
Confidence 7889999999 99865 56666666643 3589999999999998875 4322222211 11121 123799999
Q ss_pred ecccCcCCCCHHH--HHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQ--VFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~--al~el~RvLKPGGrlvIs 213 (274)
-+.+- .. .+....+. +||++++.
T Consensus 260 d~~G~------~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 260 DFVGS------QATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp ESSCC------HHHHHHGGGGEE--EEEEEEEC
T ss_pred ECCCC------chHHHHHHHhhc--CCCEEEEE
Confidence 66442 22 56666666 99999883
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.12 Score=47.66 Aligned_cols=91 Identities=10% Similarity=-0.034 Sum_probs=59.9
Q ss_pred CCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccEEEeccc
Q 023974 115 DESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDVVFLYFL 186 (274)
Q Consensus 115 ~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~V~~~f~ 186 (274)
.+|++|| .|++ .|.++..+++....+|+++. |++-++.+++- ..-.++.-.-+++. ..++.+|+|+-+.+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~l-Ga~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g 240 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSR-GAEEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT-TCSEEEETTSTTHHHHHHHHTTTCCCEEEESSC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHc-CCcEEEECCCchHHHHHHHHccCCccEEEECCC
Confidence 7899999 9983 58888888776435899886 88888877653 22222221111110 12245999996644
Q ss_pred CcCCCCHHHHHHHHHHhc-CCCCEEEEE
Q 023974 187 PAMPFPLDQVFETLANRC-SPGARVVIS 213 (274)
Q Consensus 187 l~~~~d~~~al~el~RvL-KPGGrlvIs 213 (274)
- ...+....+.| ++||++++.
T Consensus 241 ~------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 241 N------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp S------HHHHHHHHHHSCTTCEEEEES
T ss_pred c------hHHHHHHHHHhhcCCCEEEEE
Confidence 2 35677788889 699999873
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.081 Score=42.50 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=61.6
Q ss_pred CCCCCCeEE-EEcCc-hHHH-HHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC---CC-CCCCccEEEecc
Q 023974 113 EIDESSKVL-VSISS-EEFV-DRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV---PD-KWGPLDVVFLYF 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~-~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L---Pf-~~~sFD~V~~~f 185 (274)
...++.+|+ +|||. |... ..|.+.+ ..|+++|.+++-++.++++ .+..++.+|..+. .. .-..+|+|+.+.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~-~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEYAFHRLNSE-FSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGGGGGGSCTT-CCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHhc-CCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 344677999 99876 4433 3344444 5899999998766555422 2456677775431 11 124689998764
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHH
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQR 225 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~ 225 (274)
.. ......+.++.+.+.|..+++.. ..+....+.+.
T Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~iv~~-~~~~~~~~~l~ 128 (155)
T 2g1u_A 93 ND---DSTNFFISMNARYMFNVENVIAR-VYDPEKIKIFE 128 (155)
T ss_dssp SC---HHHHHHHHHHHHHTSCCSEEEEE-CSSGGGHHHHH
T ss_pred CC---cHHHHHHHHHHHHHCCCCeEEEE-ECCHHHHHHHH
Confidence 32 12334555666666676676664 33344434443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.09 Score=51.47 Aligned_cols=88 Identities=9% Similarity=-0.110 Sum_probs=57.0
Q ss_pred CCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 114 IDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 114 ~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
..+|.+|+ +|+|. |..+...++....+|+++|.++.-++.|++. ++.. .+.+++ -...|+|+..-.-...-
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~--Ga~~--~~l~e~---l~~aDvVi~atgt~~~i 343 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME--GFDV--VTVEEA---IGDADIVVTATGNKDII 343 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TCEE--CCHHHH---GGGCSEEEECSSSSCSB
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CCEE--ecHHHH---HhCCCEEEECCCCHHHH
Confidence 56789999 99986 5554444443225999999999988877653 2222 232222 14689999875433322
Q ss_pred CHHHHHHHHHHhcCCCCEEEEE
Q 023974 192 PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs 213 (274)
+ .+..+.+||||+++..
T Consensus 344 ~-----~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 344 M-----LEHIKAMKDHAILGNI 360 (494)
T ss_dssp C-----HHHHHHSCTTCEEEEC
T ss_pred H-----HHHHHhcCCCcEEEEe
Confidence 2 2455669999999874
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.033 Score=50.99 Aligned_cols=95 Identities=8% Similarity=-0.092 Sum_probs=72.0
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccC-CC---CCCCCccEEEecccCc
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIY-VP---DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~-LP---f~~~sFD~V~~~f~l~ 188 (274)
+..+| +=+|||.++..+++.+ .+++.||.++.-++..++.. ++++++.+|+.. |. -+...||+|++==-..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence 46789 9999999999988855 69999999999999999876 458889999744 32 2345799999862122
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEE
Q 023974 189 MPFPLDQVFETLAN--RCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~R--vLKPGGrlvI 212 (274)
.-.+.+++++.+.+ .+.|+|.++|
T Consensus 171 ~k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 171 RKEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp STTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCcHHHHHHHHHHHhCccCCCeEEEE
Confidence 22355677766655 5779999999
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.054 Score=47.18 Aligned_cols=97 Identities=15% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++++ .+|+.+|-+++-++..++.. .++.++++|+.+... ..+..|+
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 85 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGG-AEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL 85 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 456888 776665 2344555555 59999999999888777664 357888999866431 1147999
Q ss_pred EEecccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPF-----PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
++.+.+..... +.+ ...+.+.+.++++|+++..
T Consensus 86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 99887654321 222 1234555666778998873
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.021 Score=52.12 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHhCCCCCCCeEE-EEc-C-chHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCcc
Q 023974 109 ISAGEIDESSKVL-VSI-S-SEEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLD 179 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD 179 (274)
.+..++++|++|| .|+ | .|.++..+++.. ..+|++++ +.+-++.++ ...-..+. +-+++. ...+.+|
T Consensus 135 ~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~ga~~~~~-~~~~~~~~~~~~~~~g~D 210 (349)
T 4a27_A 135 FEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DSVTHLFD-RNADYVQEVKRISAEGVD 210 (349)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GGSSEEEE-TTSCHHHHHHHHCTTCEE
T ss_pred HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cCCcEEEc-CCccHHHHHHHhcCCCce
Confidence 3567899999999 888 3 377777777653 36899998 555555554 22112222 111110 1235799
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-+.+- ..+.+..+.|+|||++++.
T Consensus 211 vv~d~~g~-------~~~~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 211 IVLDCLCG-------DNTGKGLSLLKPLGTYILY 237 (349)
T ss_dssp EEEEECC--------------CTTEEEEEEEEEE
T ss_pred EEEECCCc-------hhHHHHHHHhhcCCEEEEE
Confidence 99966442 1235677899999999974
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.023 Score=51.80 Aligned_cols=96 Identities=10% Similarity=0.007 Sum_probs=58.1
Q ss_pred HHHhCCCCCC-CeEEE--EcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC------CCC
Q 023974 108 IISAGEIDES-SKVLV--SISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD------KWG 176 (274)
Q Consensus 108 ll~~~~~~~~-~rVLv--GcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf------~~~ 176 (274)
+++..+ .++ .+||| |+|. |.++..+++. + .+|+++|.+++-++.+++.-.+ ..+.-+-+++.. ...
T Consensus 156 ~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~~Ga~-~~~~~~~~~~~~~v~~~~~~~ 232 (349)
T 3pi7_A 156 MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEG-FRPIVTVRRDEQIALLKDIGAA-HVLNEKAPDFEATLREVMKAE 232 (349)
T ss_dssp HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESCGGGHHHHHHHTCS-EEEETTSTTHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCC-EEEECCcHHHHHHHHHHhcCC
Confidence 444444 455 56666 4443 5555566554 5 5999999999988888764322 222211111110 013
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-+.+- ..+..+.+.|+|||++++.
T Consensus 233 g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 233 QPRIFLDAVTG-------PLASAIFNAMPKRARWIIY 262 (349)
T ss_dssp CCCEEEESSCH-------HHHHHHHHHSCTTCEEEEC
T ss_pred CCcEEEECCCC-------hhHHHHHhhhcCCCEEEEE
Confidence 69999976542 2357778899999999983
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.28 Score=42.41 Aligned_cols=88 Identities=5% Similarity=-0.140 Sum_probs=57.5
Q ss_pred CeEE-EEcCchHHHHHHHH----hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 118 SKVL-VSISSEEFVDRVVE----SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~----~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.+|| .|+ |.++..+++ ++ .+|++++-++.-++.... .+++++++|+.++. -..+|+|+...+.....+
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~~~~ 78 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQG-WRIIGTSRNPDQMEAIRA--SGAEPLLWPGEEPS--LDGVTHLLISTAPDSGGD 78 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGT-CEEEEEESCGGGHHHHHH--TTEEEEESSSSCCC--CTTCCEEEECCCCBTTBC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCC-CEEEEEEcChhhhhhHhh--CCCeEEEecccccc--cCCCCEEEECCCcccccc
Confidence 5899 985 666655544 44 589999998765444333 56899999999876 577999998876654433
Q ss_pred HH-HHHHHHHHhcCCC-CEEEE
Q 023974 193 LD-QVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 193 ~~-~al~el~RvLKPG-GrlvI 212 (274)
+. +.+.+..+..+.| ++++.
T Consensus 79 ~~~~~l~~a~~~~~~~~~~~v~ 100 (286)
T 3ius_A 79 PVLAALGDQIAARAAQFRWVGY 100 (286)
T ss_dssp HHHHHHHHHHHHTGGGCSEEEE
T ss_pred HHHHHHHHHHHhhcCCceEEEE
Confidence 32 3444444443223 57765
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.33 Score=44.20 Aligned_cols=96 Identities=9% Similarity=0.020 Sum_probs=55.9
Q ss_pred HhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEE-eCcH---HHHHHHHHhCCCceEEEe------eccCCCCCCC
Q 023974 110 SAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVV-HDSL---FVLAGIKEKYDTVKCWQG------ELIYVPDKWG 176 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gV-D~S~---~ML~~Ar~k~~~v~~~~g------Dae~LPf~~~ 176 (274)
+..++.+|++|| .|+ |.|.++..+++....+++++ |.++ +-++.+++ +..-..+.. ++.++-....
T Consensus 161 ~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 161 DFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKS-LGAEHVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp HSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHH-TTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred HHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHh-cCCcEEEecCcchHHHHHHHHhCCC
Confidence 446889999999 886 34777777777532355554 4432 34555654 432222221 1222211112
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+|+|+-+.+- ....+..+.|+|||++++.
T Consensus 240 ~~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 240 QPRLALNCVGG-------KSSTELLRQLARGGTMVTY 269 (357)
T ss_dssp CCSEEEESSCH-------HHHHHHHTTSCTTCEEEEC
T ss_pred CceEEEECCCc-------HHHHHHHHhhCCCCEEEEE
Confidence 49999865431 1234578899999999884
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.026 Score=52.84 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------------------------
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL------------------------- 168 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa------------------------- 168 (274)
++.+|+ +|+|. |..+..+++....+|+++|.++.-++.+++ +. .++..-|.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~G-a~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~ 248 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LG-GKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 248 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TT-CEECCC-----------------------CCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-CeEEeecccccccccccccchhhcCHHHHhhhH
Confidence 578999 99987 555555555433589999999887777765 43 22220000
Q ss_pred cCCCCCCCCccEEEeccc-CcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 169 IYVPDKWGPLDVVFLYFL-PAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 169 e~LPf~~~sFD~V~~~f~-l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.+...-..+|+|+.... +.. ..+.-+.+++.+.+||||+++-
T Consensus 249 ~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivd 292 (384)
T 1l7d_A 249 EAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIID 292 (384)
T ss_dssp HHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEE
Confidence 001111135899996531 221 1111123667778999999876
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.59 Score=42.44 Aligned_cols=89 Identities=15% Similarity=0.015 Sum_probs=59.0
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSISS--EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|. ||+|. |.++..|.+.+. .+|++.|.+++-++.+++.. -+.-...|.+++ .-...|+|+.+.-.. ..
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-~~~~~~~~~~~~--~~~~aDvVilavp~~---~~ 107 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-IIDEGTTSIAKV--EDFSPDFVMLSSPVR---TF 107 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-SCSEEESCTTGG--GGGCCSEEEECSCGG---GH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-CcchhcCCHHHH--hhccCCEEEEeCCHH---HH
Confidence 5888 99886 355666666553 48999999999988887642 121122333220 234589999874433 34
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 023974 194 DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvI 212 (274)
.++++++...|+||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 6889999999999876543
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.08 E-value=0.075 Score=49.01 Aligned_cols=66 Identities=8% Similarity=0.057 Sum_probs=53.8
Q ss_pred CCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC-CCCccEEEec
Q 023974 117 SSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK-WGPLDVVFLY 184 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~-~~sFD~V~~~ 184 (274)
+-+|| +.||+|-+...+...+-..|.++|+++..++..+..+++.. .+|+.++... -..+|+|+.+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEEC
Confidence 45899 99999999988877765678999999999999999887654 7999887532 2369999966
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.092 Score=47.89 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=55.4
Q ss_pred CCCCCC-CeEE-EEc-C-chHHHHHHHHhCCCcEEEEeCcHH----HHHHHHHhCCCceEEEeec---cC----CCC---
Q 023974 112 GEIDES-SKVL-VSI-S-SEEFVDRVVESSPSLLLVVHDSLF----VLAGIKEKYDTVKCWQGEL---IY----VPD--- 173 (274)
Q Consensus 112 ~~~~~~-~rVL-vGc-G-TG~l~~~L~~~~~~~V~gVD~S~~----ML~~Ar~k~~~v~~~~gDa---e~----LPf--- 173 (274)
.++++| ++|| .|+ | .|.++..+++....+|+++.-+.+ ..+.+++ +..-..+.-+- ++ +-.
T Consensus 162 ~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~-lGa~~vi~~~~~~~~~~~~~i~~~t~ 240 (364)
T 1gu7_A 162 VKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKE-LGATQVITEDQNNSREFGPTIKEWIK 240 (364)
T ss_dssp SCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHH-HTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred hccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHh-cCCeEEEecCccchHHHHHHHHHHhh
Confidence 578899 9999 886 3 377777777652257888864432 2444543 33222222110 11 110
Q ss_pred -CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 174 -KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 -~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
....+|+|+-+.+- ..+. +..+.|+|||++++.
T Consensus 241 ~~~~g~Dvvid~~G~------~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 241 QSGGEAKLALNCVGG------KSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHTCCEEEEEESSCH------HHHH-HHHHTSCTTCEEEEC
T ss_pred ccCCCceEEEECCCc------hhHH-HHHHHhccCCEEEEe
Confidence 13479999966442 2233 677999999999883
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.23 Score=39.60 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=58.3
Q ss_pred CCeEE-EEcCchHHHHHH----HHhCCCcEEEEeCc-HHHHHHHHHhC-CCceEEEeeccCCC----CCCCCccEEEecc
Q 023974 117 SSKVL-VSISSEEFVDRV----VESSPSLLLVVHDS-LFVLAGIKEKY-DTVKCWQGELIYVP----DKWGPLDVVFLYF 185 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S-~~ML~~Ar~k~-~~v~~~~gDae~LP----f~~~sFD~V~~~f 185 (274)
..+|+ +|+| .++..+ .+.+ ..|+++|.+ ++-++..++.. .++.++.||+.+.. ..-+..|+|++..
T Consensus 3 ~~~vlI~G~G--~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGHS--ILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEec
Confidence 35788 8765 454444 3334 589999997 56555444433 46889999986531 1235789998764
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.- .........++|.+.|..+++..
T Consensus 80 ~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 80 DN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp SC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 32 13345666778888888888763
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.21 Score=46.05 Aligned_cols=126 Identities=6% Similarity=-0.145 Sum_probs=83.9
Q ss_pred CeEE-EEcCchHHHHHHHHhCC--CcE-EEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC---CCCccEEEeccc---C
Q 023974 118 SKVL-VSISSEEFVDRVVESSP--SLL-LVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK---WGPLDVVFLYFL---P 187 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~--~~V-~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~---~~sFD~V~~~f~---l 187 (274)
-+|+ +-||.|-+...+.+.+- ..| .|+|+++.-.+.-+.++++. ++++|+.++... ...+|+++.++- +
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 4899 99999999988877762 356 69999999999999988876 678999887532 236999996621 2
Q ss_pred -------c-CCCCHH-HHHHHHHH-hcCC---CCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 188 -------A-MPFPLD-QVFETLAN-RCSP---GARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 188 -------~-~~~d~~-~al~el~R-vLKP---GGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+ ...|.+ ..+.++.| +++- --++++.+-. .+... -.+.+.+.+.+++.||.+.
T Consensus 90 s~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV-~gl~~-------------~~~~~~i~~~l~~~GY~v~ 155 (327)
T 3qv2_A 90 NNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENV-PLFKE-------------SLVFKEIYNILIKNQYYIK 155 (327)
T ss_dssp SHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEEC-GGGGG-------------SHHHHHHHHHHHHTTCEEE
T ss_pred ccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEch-hhhcC-------------hHHHHHHHHHHHhCCCEEE
Confidence 1 234555 67788888 5532 1234443211 11110 0124678888999999876
Q ss_pred EEEe
Q 023974 255 NFVD 258 (274)
Q Consensus 255 ~~~d 258 (274)
..+-
T Consensus 156 ~~vl 159 (327)
T 3qv2_A 156 DIIC 159 (327)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.021 Score=54.17 Aligned_cols=95 Identities=8% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeecc-----------------------C
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELI-----------------------Y 170 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae-----------------------~ 170 (274)
++.+|+ +|+|. |..+..+++....+|+++|.+++-++.+++ . +.+++..|.. .
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~-l-Ga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 248 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-GAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL 248 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHH-T-TCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-c-CCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence 468999 99987 555555555432589999999988887754 3 3333221110 1
Q ss_pred CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 171 VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 171 LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+...-...|+|+.....--...+.-+-+++.+.+||||.++-
T Consensus 249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVd 290 (401)
T 1x13_A 249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVD 290 (401)
T ss_dssp HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEE
Confidence 111112479998763221111111122567777999999876
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.33 Score=40.95 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=49.5
Q ss_pred CCCeEEEEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCCc-eEEEeecc-CCCCCCCCccEEEecccCcC
Q 023974 116 ESSKVLVSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDTV-KCWQGELI-YVPDKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 116 ~~~rVLvGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~v-~~~~gDae-~LPf~~~sFD~V~~~f~l~~ 189 (274)
.+.+|||--|||-++..+ ++++ .+|++++-+++-++...+ .++ +++++|+. .+...-+..|+|+.+.+...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~ 96 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELRE--RGASDIVVANLEEDFSHAFASIDAVVFAAGSGP 96 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH--TTCSEEEECCTTSCCGGGGTTCSEEEECCCCCT
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHHh--CCCceEEEcccHHHHHHHHcCCCEEEECCCCCC
Confidence 356888333555555444 4445 599999999876665544 367 89999985 33333357999998877654
Q ss_pred CCCHHH
Q 023974 190 PFPLDQ 195 (274)
Q Consensus 190 ~~d~~~ 195 (274)
..+.++
T Consensus 97 ~~~~~~ 102 (236)
T 3e8x_A 97 HTGADK 102 (236)
T ss_dssp TSCHHH
T ss_pred CCCccc
Confidence 444443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.38 Score=41.99 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=54.3
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+|. ||||. | .++..|.+.+ .+|+++|.+++-++.+++. .-......|.+++ ...|+|+.+.-.. ....
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~----~~~D~vi~av~~~---~~~~ 72 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVER-QLVDEAGQDLSLL----QTAKIIFLCTPIQ---LILP 72 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHT-TSCSEEESCGGGG----TTCSEEEECSCHH---HHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHhC-CCCccccCCHHHh----CCCCEEEEECCHH---HHHH
Confidence 577 99886 3 3445555555 4899999999988887643 2111122333333 5689999874432 3467
Q ss_pred HHHHHHHhcCCCCEEE
Q 023974 196 VFETLANRCSPGARVV 211 (274)
Q Consensus 196 al~el~RvLKPGGrlv 211 (274)
+++++...++||..++
T Consensus 73 ~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 73 TLEKLIPHLSPTAIVT 88 (279)
T ss_dssp HHHHHGGGSCTTCEEE
T ss_pred HHHHHHhhCCCCCEEE
Confidence 8888888888876553
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.2 Score=43.68 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=48.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----C-CCceEEEeeccCC-C----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----Y-DTVKCWQGELIYV-P----------DKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~-~~v~~~~gDae~L-P----------f~~ 175 (274)
.+.+|| .|++.| .++..|++++ .+|+++|-+.+-++.+.+. . .++.++++|+.+. . ...
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 456788 777665 3445555556 5999999998877665543 2 3588899998765 1 011
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+.+|+++.+.+..
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999997754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.063 Score=47.33 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=37.9
Q ss_pred ceEEEeeccC-CC-CCCCCccEEEec--ccCcC--C----------CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 161 VKCWQGELIY-VP-DKWGPLDVVFLY--FLPAM--P----------FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 161 v~~~~gDae~-LP-f~~~sFD~V~~~--f~l~~--~----------~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
.++++||+.+ |. ..+++||+|++. |.... . .-....++++.|+|||||.++|.+
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4577888754 21 346799999977 43320 0 124578899999999999999975
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.031 Score=53.14 Aligned_cols=94 Identities=13% Similarity=-0.007 Sum_probs=57.5
Q ss_pred CCCeEE-EEcCc-hHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEee---------------------ccCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE---------------------LIYV 171 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD---------------------ae~L 171 (274)
++.+|+ +|+|. |..+..++. .+ .+|+++|.+++-++.+++- +.+++..+ .+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG-a~V~v~D~~~~~l~~~~~l--Ga~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l 259 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG-AKTTGYDVRPEVAEQVRSV--GAQWLDLGIDAAGEGGYARELSEAERAQQQQAL 259 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSGGGHHHHHHT--TCEECCCC-------------CHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc--CCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence 568999 99997 555554444 45 5899999999988888762 23332211 1112
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
...-...|+|+.....---..+.-+-+++.+.+|||+.++=
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVD 300 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVD 300 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEE
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEE
Confidence 22226799999763221111222234688888999887765
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.19 Score=45.74 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=57.3
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCc--EEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC----CCCccEEEec
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSL--LLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK----WGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~--V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~----~~sFD~V~~~ 184 (274)
.....-+|+ +-||.|-+...+.+.+-.. |.++|+++...+.-+.++++..++.+|+.++... .+.+|+++.+
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~gg 90 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGG 90 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEEC
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEec
Confidence 334556899 9999999988887766423 6999999999998888999888889999987532 1479999965
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.3 Score=43.38 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCeEE-EEcCc----h-HHHHHHHHhCCCcEEEEeCcHHHHHHH---HHhCCCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISS----E-EFVDRVVESSPSLLLVVHDSLFVLAGI---KEKYDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGT----G-~l~~~L~~~~~~~V~gVD~S~~ML~~A---r~k~~~v~~~~gDae~LP----------f~~~ 176 (274)
.+.+|| .|.+. | .++..|++.+ .+|+.+|-++.-.+.+ .+..+++.++++|+.+.. ..-+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAG-AELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG 108 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTT-CEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 456888 77652 3 3455666666 5899999987544333 334567888899986632 1125
Q ss_pred CccEEEecccCcC---------CCCHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAM---------PFPLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~---------~~d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+... ..+.+ ...+.+.+.++.+|+++..
T Consensus 109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~i 168 (293)
T 3grk_A 109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTL 168 (293)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 7999998876542 11121 2344556677889999873
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.086 Score=48.80 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=84.0
Q ss_pred eEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC---CCCccEEEec-----ccC
Q 023974 119 KVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK---WGPLDVVFLY-----FLP 187 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~---~~sFD~V~~~-----f~l 187 (274)
+|+ +-||.|-+...+.+.+- ..|.++|+++.-.+.-+.++++..++.+|+.++... ...+|+++.+ |..
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS~ 84 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFTR 84 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSEE
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchhh
Confidence 789 99999999888877763 468899999999999999999988899999988532 2369999955 221
Q ss_pred ---c-CCCCHH-HHHHHHHHhc---C-CCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 188 ---A-MPFPLD-QVFETLANRC---S-PGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 188 ---~-~~~d~~-~al~el~RvL---K-PGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+ ...|.+ ..+.++.|++ | | ++++.+-.. +.+. . ...+.+.+.+++.||.+...+-
T Consensus 85 ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~-gl~~-----~--------~~~~~i~~~l~~~GY~v~~~vl 148 (333)
T 4h0n_A 85 NGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVK-GFEN-----S--------TVRNLFIDKLKECNFIYQEFLL 148 (333)
T ss_dssp TTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECT-TGGG-----S--------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecch-hhhh-----h--------hHHHHHHHHHHhCCCeEEEEEe
Confidence 1 223433 4566666655 3 5 444432111 1110 0 1136788889999998766544
Q ss_pred c
Q 023974 259 E 259 (274)
Q Consensus 259 ~ 259 (274)
+
T Consensus 149 ~ 149 (333)
T 4h0n_A 149 C 149 (333)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.42 Score=42.77 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred CCCeEE-EEcCc-hHHHHH-HHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDR-VVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~-L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.+.+|+ ||+|. |..... +...+ .+|++.|.+++-++.+++ . +++... ..++...-...|+|+.....+.+ +
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d~~~~~~~~~~~-~-g~~~~~--~~~l~~~l~~aDvVi~~~p~~~i-~ 229 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALG-ANVKVGARSSAHLARITE-M-GLVPFH--TDELKEHVKDIDICINTIPSMIL-N 229 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH-T-TCEEEE--GGGHHHHSTTCSEEEECCSSCCB-C
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH-C-CCeEEc--hhhHHHHhhCCCEEEECCChhhh-C
Confidence 567999 99876 433333 33334 599999999976665544 2 233221 12232223568999988666544 3
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023974 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
. +....+|||+.++-
T Consensus 230 ~-----~~~~~mk~g~~lin 244 (300)
T 2rir_A 230 Q-----TVLSSMTPKTLILD 244 (300)
T ss_dssp H-----HHHTTSCTTCEEEE
T ss_pred H-----HHHHhCCCCCEEEE
Confidence 2 24467999987765
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.39 Score=36.81 Aligned_cols=91 Identities=5% Similarity=-0.020 Sum_probs=54.0
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---C-CCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---D-KWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f-~~~sFD~V~~~f~l~~ 189 (274)
+.+|+ +|+|. |.. +..|.+.+ .+|+++|.+++-++.+++. ...++.+|..+.. . .-+.+|+|+.+....
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g-~~v~~~d~~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~- 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASY--ATHAVIANATEENELLSLGIRNFEYVIVAIGAN- 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT-CCCEEEESCHHHHHTTTTT--CSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC-
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh--CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc-
Confidence 45789 99864 322 23333334 5899999998776655433 3456777765421 1 135689999765431
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+....+.+..+.+.|. ++++.
T Consensus 82 -~~~~~~~~~~~~~~~~~-~ii~~ 103 (144)
T 2hmt_A 82 -IQASTLTTLLLKELDIP-NIWVK 103 (144)
T ss_dssp -HHHHHHHHHHHHHTTCS-EEEEE
T ss_pred -hHHHHHHHHHHHHcCCC-eEEEE
Confidence 02234556667778775 66653
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.37 Score=43.07 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=51.7
Q ss_pred CCCeEE-EEcCc-hHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
.+.+|+ ||+|. |......+. .+ .+|++.|.+++-++.+++ + +++.. +..++...-...|+|+.....+.+ +
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~dr~~~~~~~~~~-~-g~~~~--~~~~l~~~l~~aDvVi~~~p~~~i-~ 227 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALG-AKVKVGARESDLLARIAE-M-GMEPF--HISKAAQELRDVDVCINTIPALVV-T 227 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHH-T-TSEEE--EGGGHHHHTTTCSEEEECCSSCCB-C
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHH-C-CCeec--ChhhHHHHhcCCCEEEECCChHHh-C
Confidence 578999 99876 443333333 34 599999999876665543 2 23332 112222223568999987655443 3
Q ss_pred HHHHHHHHHHhcCCCCEEEE
Q 023974 193 LDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvI 212 (274)
. + ..+.+|||+.++-
T Consensus 228 ~-~----~l~~mk~~~~lin 242 (293)
T 3d4o_A 228 A-N----VLAEMPSHTFVID 242 (293)
T ss_dssp H-H----HHHHSCTTCEEEE
T ss_pred H-H----HHHhcCCCCEEEE
Confidence 2 2 3446899988765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.35 Score=42.05 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=60.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc------------HHHHHHHHHh----CCCceEEEeeccCCCC--
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS------------LFVLAGIKEK----YDTVKCWQGELIYVPD-- 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S------------~~ML~~Ar~k----~~~v~~~~gDae~LPf-- 173 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.+ .+-++.+.+. ..++.++++|+.+...
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEG-ADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence 456788 776665 3344555555 589999987 6555554432 3467888999866421
Q ss_pred --------CCCCccEEEecccCcCC------CCHHH-----------HHHHHHHhcCCCCEEEEE
Q 023974 174 --------KWGPLDVVFLYFLPAMP------FPLDQ-----------VFETLANRCSPGARVVIS 213 (274)
Q Consensus 174 --------~~~sFD~V~~~f~l~~~------~d~~~-----------al~el~RvLKPGGrlvIs 213 (274)
.-+..|+++.+.+.... .+.++ ..+.+.+.++.+|+++..
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 11479999988765321 11222 234556667889998874
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.97 Score=41.86 Aligned_cols=147 Identities=9% Similarity=-0.032 Sum_probs=84.5
Q ss_pred CCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHH--h-------------------------CCCceEEE
Q 023974 116 ESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKE--K-------------------------YDTVKCWQ 165 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~--k-------------------------~~~v~~~~ 165 (274)
+...|+ +|||-=....+|...+ + .+++=||+-.-+-.+.+. + -++..++-
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 345788 9999988888886642 2 689999995544333221 1 13456777
Q ss_pred eeccCCC----------CCCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHH---hhC
Q 023974 166 GELIYVP----------DKWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHPQGR--EALQKQR---KQF 228 (274)
Q Consensus 166 gDae~LP----------f~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~---~~~ 228 (274)
+|+.++. +..+.-=++++-.++-.+. +-++.++.+.+.. |+|.+++.++.+. ..-..+. ...
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M~~~l~~~ 248 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIMIENLRRR 248 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHHHHHHHTT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHHHHHHHHh
Confidence 8876531 2222222444445555542 2235555555554 6677766543321 1111111 111
Q ss_pred --cccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 229 --PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 229 --~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
+-.++..+|+.++..+.+.++||+.+...+-.+.|
T Consensus 249 g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~ 285 (334)
T 3iei_A 249 QCDLAGVETCKSLESQKERLLSNGWETASAVDMMELY 285 (334)
T ss_dssp TCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHH
T ss_pred CCCCcccccCCCHHHHHHHHHHcCCCcceeecHHHHH
Confidence 11255678999999999999999987766644443
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.49 Score=41.23 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=48.9
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|-+++-++.+.+.. .++.++++|+.+... .-+.+|+
T Consensus 5 ~~k~vlITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~ 83 (263)
T 2a4k_A 5 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG 83 (263)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence 356788 776555 3344455555 59999999998888777665 357888898865321 1146899
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
++.+.+..
T Consensus 84 lvnnAg~~ 91 (263)
T 2a4k_A 84 VAHFAGVA 91 (263)
T ss_dssp EEEGGGGT
T ss_pred EEECCCCC
Confidence 99887653
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.51 Score=40.78 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=46.1
Q ss_pred CCCeEE-EEcC--ch---HHHHHHHHhCCCcEEEEeCcH---HHHHHHHHhCCCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSIS--SE---EFVDRVVESSPSLLLVVHDSL---FVLAGIKEKYDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcG--TG---~l~~~L~~~~~~~V~gVD~S~---~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~ 176 (274)
.+.+|| .|++ .| .++..|++++ .+|+.+|-++ +.++..++..+...++++|+.+.. ..-+
T Consensus 8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T 1qsg_A 8 SGKRILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP 86 (265)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 356788 7764 22 2344455555 5899999876 555555555555678888876532 1224
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
..|+++.+.+..
T Consensus 87 ~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 87 KFDGFVHSIGFA 98 (265)
T ss_dssp SEEEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999887653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.35 Score=41.80 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=58.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC----------CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf----------~~ 175 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|-+++-++.+.+.. .++.++++|+.+... .-
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 356788 776554 2344455555 58999999987665544322 246788889865321 01
Q ss_pred CCccEEEecccCcCCCCHHHHH-----------HHHHHhcCC-----CCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVF-----------ETLANRCSP-----GARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al-----------~el~RvLKP-----GGrlvIs 213 (274)
+..|+++.+.+.....+.++.+ +.+.+.++. +|+++..
T Consensus 85 g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~i 138 (267)
T 2gdz_A 85 GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINM 138 (267)
T ss_dssp SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEE
T ss_pred CCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEe
Confidence 4689999988765445555443 334444432 6888763
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.28 Score=43.04 Aligned_cols=89 Identities=8% Similarity=0.034 Sum_probs=56.0
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-----------eeccCCCCCCCCccEEEe
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-----------GELIYVPDKWGPLDVVFL 183 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-----------gDae~LPf~~~sFD~V~~ 183 (274)
.+|. ||+|. | .++..|++.+ .+|+.+|.+++-++..+++. +.... .+..++...-...|+|+.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGG-NDVTLIDQWPAHIEAIRKNG--LIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIA 80 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHC--EEEEETTEEEEECCCEECGGGCCTTSCCCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhCC--EEEEeCCCeeEecceeecchhhcccCCCCCEEEE
Confidence 3788 99986 3 3445565555 48999999999888877653 22111 011112111126899998
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.-.. ..+++++++...++||..++.
T Consensus 81 ~v~~~---~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 81 LTKAQ---QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSCHH---HHHHHHHHHGGGCCTTCEEEE
T ss_pred Eeccc---cHHHHHHHHHHhcCCCCEEEE
Confidence 74332 357888888888988765554
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.28 Score=42.10 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=48.3
Q ss_pred CCCCCeEE-EEcC--ch---HHHHHHHHhCCCcEEEEeCcH---HHHHHHHHhCCCceEEEeeccCCC----------CC
Q 023974 114 IDESSKVL-VSIS--SE---EFVDRVVESSPSLLLVVHDSL---FVLAGIKEKYDTVKCWQGELIYVP----------DK 174 (274)
Q Consensus 114 ~~~~~rVL-vGcG--TG---~l~~~L~~~~~~~V~gVD~S~---~ML~~Ar~k~~~v~~~~gDae~LP----------f~ 174 (274)
...+.+|| .|++ .| .++..|++++ .+|+.+|.+. +-++...+..+.+.++++|+.+.. ..
T Consensus 11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 11 FLDGKRILLTGLLSNRSIAYGIAKACKREG-AELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHcC-CCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567889 7764 33 2344555556 5899998774 344455556777889999986632 11
Q ss_pred CCCccEEEecccCc
Q 023974 175 WGPLDVVFLYFLPA 188 (274)
Q Consensus 175 ~~sFD~V~~~f~l~ 188 (274)
.+..|+++.+.+..
T Consensus 90 ~g~id~lv~nAg~~ 103 (271)
T 3ek2_A 90 WDSLDGLVHSIGFA 103 (271)
T ss_dssp CSCEEEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 24789999887653
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.26 Score=43.82 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCeEE-EEcCc----h-HHHHHHHHhCCCcEEEEeCcHHHH---HHHHHhCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISS----E-EFVDRVVESSPSLLLVVHDSLFVL---AGIKEKYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGT----G-~l~~~L~~~~~~~V~gVD~S~~ML---~~Ar~k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++. | .++..|++.+ .+|+.+|.+++-. +...+..+.+.++++|+.+... .-+
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQG-AEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG 107 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356788 77643 3 3455666666 5899999886433 3333445567888999866321 114
Q ss_pred CccEEEecccCcCC---------CCHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMP---------FPLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~---------~d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
.+|+++.+.+.... .+.+ ...+.+.+.++.+|+++..
T Consensus 108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i 167 (296)
T 3k31_A 108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL 167 (296)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 78999988765421 1222 1334556667789999873
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.061 Score=51.48 Aligned_cols=95 Identities=12% Similarity=0.001 Sum_probs=57.5
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec-------------cCCC--------
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL-------------IYVP-------- 172 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa-------------e~LP-------- 172 (274)
++.+|+ +|+|. |..+..++.....+|++.|.++.-++.+++- +.+++..+. .+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~--G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~ 266 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL--GAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA 266 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT--TCEECCCCC-----------------CHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--CCceeecccccccccccccchhhhcchhhhhhhH
Confidence 568999 99997 6555555554225999999999988888763 233322111 1111
Q ss_pred ----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 173 ----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 173 ----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
..-...|+|+.....---..+.-+-+++.+.+|||..++=
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVD 310 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVD 310 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEE
T ss_pred hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEE
Confidence 1114689998653221111222334688888999988775
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.61 Score=39.29 Aligned_cols=87 Identities=14% Similarity=0.057 Sum_probs=57.6
Q ss_pred eEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 119 KVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
+|+ +|+ |.++..++ +.+ ..|+++|.+++-++...++. ++.++.||+.+.. ..-...|+|++...-
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~~-~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~-- 75 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-KATIIHGDGSHKEILRDAEVSKNDVVVILTPR-- 75 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-SSEEEESCTTSHHHHHHHTCCTTCEEEECCSC--
T ss_pred EEEEECC--CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHc-CCeEEEcCCCCHHHHHhcCcccCCEEEEecCC--
Confidence 467 776 45544443 334 58999999999888766554 5778899987632 123578999876322
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvI 212 (274)
......+..++|.+.|..+++.
T Consensus 76 -d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 76 -DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp -HHHHHHHHHHHHHTSCCCEEEE
T ss_pred -cHHHHHHHHHHHHHcCCCeEEE
Confidence 1233556667777778788766
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=92.44 E-value=2 Score=38.65 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=77.4
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEE-----EeeccCCCCCCCCccEEEec
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCW-----QGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~-----~gDae~LPf~~~sFD~V~~~ 184 (274)
.+|. ||+|. | .++..|++.+ ..|+.+ ..++-++..+++. ++..+. ..|.++ -..+|+|+.+
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~D~vila 93 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARAG-HEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA----VQGADLVLFC 93 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT-CEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG----GTTCSEEEEC
T ss_pred CcEEEECcCHHHHHHHHHHHHCC-CeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH----cCCCCEEEEE
Confidence 5899 99987 3 4455565555 489999 8898888887652 221111 122222 2578999977
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCc-cc-------------------------ccccCCC
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFP-DV-------------------------IVSDLPD 238 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~-~~-------------------------si~~fps 238 (274)
--. . +.+++++++...++|+..++.. ..|-...+.+.+.++ .+ .+..-+.
T Consensus 94 vk~-~--~~~~~l~~l~~~l~~~~~iv~~-~nGi~~~~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~~~~ 169 (318)
T 3hwr_A 94 VKS-T--DTQSAALAMKPALAKSALVLSL-QNGVENADTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEPTSH 169 (318)
T ss_dssp CCG-G--GHHHHHHHHTTTSCTTCEEEEE-CSSSSHHHHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECCCTT
T ss_pred ccc-c--cHHHHHHHHHHhcCCCCEEEEe-CCCCCcHHHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcCCHH
Confidence 322 2 5688999999999998766543 233222233333331 10 0111244
Q ss_pred HHHHHHHHHhCCCcEe
Q 023974 239 QMTLQKAAGNHCFQID 254 (274)
Q Consensus 239 ~~eL~~ll~~aGF~~v 254 (274)
.+++++++...||...
T Consensus 170 ~~~l~~~l~~~~~~~~ 185 (318)
T 3hwr_A 170 GANLAAIFAAAGVPVE 185 (318)
T ss_dssp THHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCCcE
Confidence 6789999999999753
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.31 Score=41.06 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=48.3
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC----------CCCCccEEE
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD----------KWGPLDVVF 182 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD~V~ 182 (274)
+.+|| .|++.| .++..|++++ .+|+++|-+++-++...+..+++.++++|+.+... .-+.+|+|+
T Consensus 5 ~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (234)
T 2ehd_A 5 KGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV 83 (234)
T ss_dssp CCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45688 665543 2344445555 58999999998887777767778888999865321 013789999
Q ss_pred ecccCc
Q 023974 183 LYFLPA 188 (274)
Q Consensus 183 ~~f~l~ 188 (274)
.+.+..
T Consensus 84 ~~Ag~~ 89 (234)
T 2ehd_A 84 NNAGVG 89 (234)
T ss_dssp ECCCCC
T ss_pred ECCCcC
Confidence 887653
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.65 Score=40.62 Aligned_cols=72 Identities=11% Similarity=0.127 Sum_probs=50.9
Q ss_pred CCCeEE-EEcC----ch-HHHHHHHHhCCCcEEEEeCcH--HHHHHHHHhCCCceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSIS----SE-EFVDRVVESSPSLLLVVHDSL--FVLAGIKEKYDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcG----TG-~l~~~L~~~~~~~V~gVD~S~--~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~s 177 (274)
.+.+|| .|.+ -| .++..|++.+ .+|+.+|.+. +.++..++..+++.++++|+.+.. ...+.
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 103 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREG-AELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG 103 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTT-CEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcC-CEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 456888 7733 34 3455666666 4899999887 777777777778899999986632 11257
Q ss_pred ccEEEecccCc
Q 023974 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
.|+++.+.+..
T Consensus 104 id~li~nAg~~ 114 (280)
T 3nrc_A 104 LDAIVHSIAFA 114 (280)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCccC
Confidence 89999887754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.41 Score=42.22 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=54.0
Q ss_pred CeEE-EEc-Cc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSI-SS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGc-GT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|. ||+ |. | .++..|.+.+ .+|+++|.+++-++.+++ . ++.. .++...-...|+|+.+.-... .
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~-~-g~~~-----~~~~~~~~~aDvVi~av~~~~---~ 80 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPEGRDRLQG-M-GIPL-----TDGDGWIDEADVVVLALPDNI---I 80 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHHHHHHHHH-T-TCCC-----CCSSGGGGTCSEEEECSCHHH---H
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHh-c-CCCc-----CCHHHHhcCCCEEEEcCCchH---H
Confidence 3788 999 86 3 4455565555 489999999998887766 2 2322 122222346899998754332 4
Q ss_pred HHHHHHHHHhcCCCCEEE
Q 023974 194 DQVFETLANRCSPGARVV 211 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlv 211 (274)
+++++++...++||..++
T Consensus 81 ~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 81 EKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp HHHHHHHGGGSCTTCEEE
T ss_pred HHHHHHHHHhCCCCCEEE
Confidence 678888888888765443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.17 Score=43.19 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=57.2
Q ss_pred CCCeEE-EEcCchHHHH----HHHH-hCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCC----------C
Q 023974 116 ESSKVL-VSISSEEFVD----RVVE-SSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDK----------W 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~----~L~~-~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~----------~ 175 (274)
.+.+|| .| |+|-++. .|++ .+ .+|+++|-+.+-++.+.+. ..++.++++|+.+...- .
T Consensus 3 ~~k~vlITG-asggIG~~~a~~L~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 3 GIHVALVTG-GNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCEEEESS-CSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHhcC-CeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 356778 55 4444444 4455 44 5899999987766554433 34688899998764210 1
Q ss_pred CCccEEEecccCcCC--------CCHH-----------HHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMP--------FPLD-----------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~--------~d~~-----------~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+.+.+.... .+.+ .+++.+.+.++++|+++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 379999988654321 1111 1334445556677888774
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.16 Score=43.93 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=48.9
Q ss_pred CCCeEE-EEc-Cch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC----------CC
Q 023974 116 ESSKVL-VSI-SSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGc-GTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf----------~~ 175 (274)
.+.+|| .|+ |.| .++..|++++ .+|+.+|.+.+-++.+.+.. .++.++++|+.+... ..
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 356788 766 554 3455566666 58999999988777665542 468889999866321 11
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+.+|+++.+.+..
T Consensus 100 g~id~li~~Ag~~ 112 (266)
T 3o38_A 100 GRLDVLVNNAGLG 112 (266)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCcEEEECCCcC
Confidence 4789999887653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.69 Score=39.82 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=59.9
Q ss_pred CCCeEE-EEcC--c--h-HHHHHHHHhCCCcEEEEeCcHHHHHHH---HHhCC--CceEEEeeccCCCC----------C
Q 023974 116 ESSKVL-VSIS--S--E-EFVDRVVESSPSLLLVVHDSLFVLAGI---KEKYD--TVKCWQGELIYVPD----------K 174 (274)
Q Consensus 116 ~~~rVL-vGcG--T--G-~l~~~L~~~~~~~V~gVD~S~~ML~~A---r~k~~--~v~~~~gDae~LPf----------~ 174 (274)
.+.+|| .|++ + | .++..|++++ .+|+.+|-+....+.+ .+..+ ++.++++|+.+... .
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAG-ARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCC-CEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 356788 7765 3 3 3455666666 4899998876443333 33333 58889999876431 1
Q ss_pred CCCccEEEecccCcC---------CCCHHH--------------HHHHHHHhcCCCCEEEEE
Q 023974 175 WGPLDVVFLYFLPAM---------PFPLDQ--------------VFETLANRCSPGARVVIS 213 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~---------~~d~~~--------------al~el~RvLKPGGrlvIs 213 (274)
.+.+|+++.+.+... ..+.+. .++.+...++++|+++..
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 147899998866432 012221 345566777889998873
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.76 Score=44.52 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=74.4
Q ss_pred CCccccccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcH
Q 023974 72 EGTVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSL 148 (274)
Q Consensus 72 ~~~~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~ 148 (274)
|+-..|.++++...++|+.=+.... |. .....+-.+|- ||+|+ +.++..+++.+ ..|+..|.++
T Consensus 21 ~~~~~~~~~a~~~~~~w~~p~~~~~-------~~-----~~~~~~i~kVaVIGaG~MG~~IA~~la~aG-~~V~l~D~~~ 87 (460)
T 3k6j_A 21 SEVRSYLMEAHSLAGQWSLPNDRGD-------HT-----NSEAYDVNSVAIIGGGTMGKAMAICFGLAG-IETFLVVRNE 87 (460)
T ss_dssp CHHHHHHHHTTCCTTSCBCSTTSCB-------TT-----SCCCCCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred HHHHHHHHhHHHhhccccCCCCccc-------cc-----cCCcccCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEECcH
Confidence 5556799999999999997443211 11 11223335788 99998 34556666666 4999999999
Q ss_pred H--------HHHHHHHhC-----------CCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCE
Q 023974 149 F--------VLAGIKEKY-----------DTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGAR 209 (274)
Q Consensus 149 ~--------ML~~Ar~k~-----------~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGr 209 (274)
+ .++.+.++- ..+++ ..|.+. -...|+|+.+- +-...-.+++++++...++||-.
T Consensus 88 e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a----l~~aDlVIeAV-pe~~~vk~~v~~~l~~~~~~~aI 161 (460)
T 3k6j_A 88 QRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK----LSNCDLIVESV-IEDMKLKKELFANLENICKSTCI 161 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG----CTTCSEEEECC-CSCHHHHHHHHHHHHTTSCTTCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH----HccCCEEEEcC-CCCHHHHHHHHHHHHhhCCCCCE
Confidence 8 122222221 11222 334332 24579998763 32221245788999999999877
Q ss_pred EEE
Q 023974 210 VVI 212 (274)
Q Consensus 210 lvI 212 (274)
|+.
T Consensus 162 las 164 (460)
T 3k6j_A 162 FGT 164 (460)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=1.1 Score=37.75 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~f 185 (274)
++.+|| .|++.| .++..|++++ .+|+++|-+++-++...+..++++++++|+.+.. ..-+.+|+|+.+.
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A 84 (244)
T 3d3w_A 6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence 356788 666554 2334445555 5899999999888777666777788888876532 1224789999886
Q ss_pred cCc
Q 023974 186 LPA 188 (274)
Q Consensus 186 ~l~ 188 (274)
+..
T Consensus 85 g~~ 87 (244)
T 3d3w_A 85 AVA 87 (244)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.05 E-value=1.2 Score=37.38 Aligned_cols=69 Identities=12% Similarity=-0.038 Sum_probs=47.8
Q ss_pred eEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC-------CCCCCccEEEeccc
Q 023974 119 KVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP-------DKWGPLDVVFLYFL 186 (274)
Q Consensus 119 rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP-------f~~~sFD~V~~~f~ 186 (274)
+|| .|++.| .++..|++++ .+|+.+|-+++-++.+.+.. .++.++++|+.+.. .-.+.+|+++.+.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag 81 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEG-KATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG 81 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred EEEEecCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence 577 776665 2344555555 58999999999998888776 35788888876532 12244599998876
Q ss_pred Cc
Q 023974 187 PA 188 (274)
Q Consensus 187 l~ 188 (274)
..
T Consensus 82 ~~ 83 (230)
T 3guy_A 82 SG 83 (230)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.87 E-value=1.2 Score=37.39 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=48.4
Q ss_pred CCCeEE-EEcCchHHHH----HHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEec
Q 023974 116 ESSKVL-VSISSEEFVD----RVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLY 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~ 184 (274)
.+.+|| .|++ |-++. .|++++ .+|+++|-+++-++...+..++++++++|+.+.. ...+.+|+|+.+
T Consensus 6 ~~~~vlVTGas-ggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 83 (244)
T 1cyd_A 6 SGLRALVTGAG-KGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN 83 (244)
T ss_dssp TTCEEEEESTT-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence 356788 6654 44444 444445 5899999998877776666677888888876532 123578999988
Q ss_pred ccCc
Q 023974 185 FLPA 188 (274)
Q Consensus 185 f~l~ 188 (274)
.+..
T Consensus 84 Ag~~ 87 (244)
T 1cyd_A 84 AALV 87 (244)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=91.86 E-value=0.18 Score=43.73 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++++ .+|+.+|.+.+-++...+.. +++.++++|+.+.. ...+..|+
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 85 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREG-ATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI 85 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 456788 776655 3444555555 58999999998887766654 46788899886532 11237999
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 86 lv~~Ag~ 92 (259)
T 4e6p_A 86 LVNNAAL 92 (259)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9988765
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.78 E-value=1.2 Score=38.88 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=54.8
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCC-CccEEEecccCcCCCCH
Q 023974 119 KVL-VSISS-E-EFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWG-PLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~-sFD~V~~~f~l~~~~d~ 193 (274)
+|. ||+|. | .++..|.+.+. .+|+++|.+++-++.+++. .-......|.++. -. ..|+|+.+.-.. ..
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~---~~~~aDvVilavp~~---~~ 75 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKV---EDFSPDFVMLSSPVR---TF 75 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCGGGG---GGTCCSEEEECSCHH---HH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC-CCcccccCCHHHH---hcCCCCEEEEcCCHH---HH
Confidence 678 99887 3 34445554442 3799999999988887653 2111112233221 13 689999874433 23
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 023974 194 DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvI 212 (274)
.+++.++...++||..++.
T Consensus 76 ~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 76 REIAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHhhCCCCcEEEE
Confidence 5788888888999886655
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.16 Score=44.32 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCCeEE-EEcC--ch---HHHHHHHHhCCCcEEEEeCcHH---HHHHHHHhCCCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSIS--SE---EFVDRVVESSPSLLLVVHDSLF---VLAGIKEKYDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcG--TG---~l~~~L~~~~~~~V~gVD~S~~---ML~~Ar~k~~~v~~~~gDae~LP----------f~~~ 176 (274)
.+.+|| .|++ .| .++..|++++ .+|+.+|-+++ .++..++..+.+.++++|+.+.. ..-+
T Consensus 5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (275)
T 2pd4_A 5 KGKKGLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG 83 (275)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356788 7764 33 2334444455 58999998765 44444455566888899986532 0124
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
..|+++.+.+..
T Consensus 84 ~id~lv~nAg~~ 95 (275)
T 2pd4_A 84 SLDFIVHSVAFA 95 (275)
T ss_dssp CEEEEEECCCCC
T ss_pred CCCEEEECCccC
Confidence 789999887653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.26 Score=42.69 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=48.7
Q ss_pred CCCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCC
Q 023974 115 DESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 115 ~~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~ 176 (274)
-.+.+|| .|++.| .++..|++.+ .+|+.+|-+++-++...+. ..++.++++|+.+... ..+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 105 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSLG-ARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG 105 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3567888 776554 3344455555 5899999999887766544 3467888898865431 114
Q ss_pred CccEEEecccC
Q 023974 177 PLDVVFLYFLP 187 (274)
Q Consensus 177 sFD~V~~~f~l 187 (274)
..|+|+.+.+.
T Consensus 106 ~id~lv~~Ag~ 116 (262)
T 3rkr_A 106 RCDVLVNNAGV 116 (262)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 79999988765
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.61 Score=39.67 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=59.4
Q ss_pred CCCeEE-EEcCchHHHHHHHHhC--C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESS--P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~--~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l 187 (274)
...+|+ +|+| .++..+++.- . . |+++|.+++-++.++ .++.++.||+.+.. ..-...|+|++...-
T Consensus 8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (234)
T 2aef_A 8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR---SGANFVHGDPTRVSDLEKANVRGARAVIVDLES 81 (234)
T ss_dssp --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSC
T ss_pred CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCC
Confidence 345788 8875 5666665542 1 4 999999999887776 56889999986532 123578999876321
Q ss_pred cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 188 AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 188 ~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..........+|-+.|+.+++.-
T Consensus 82 ---d~~n~~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 82 ---DSETIHCILGIRKIDESVRIIAE 104 (234)
T ss_dssp ---HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ---cHHHHHHHHHHHHHCCCCeEEEE
Confidence 12234455678888888788763
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=91.45 E-value=0.96 Score=39.28 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeC-cHHHHHHHHH----hCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHD-SLFVLAGIKE----KYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~-S~~ML~~Ar~----k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|. +.+-++...+ ...++.++++|+.+... .-+
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLG-AKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456788 777665 2344555555 48888775 4444444332 34568888999866431 114
Q ss_pred CccEEEecccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPF-----PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+..... +.+ ...+.+.+.++++|++++.
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999886653321 221 2345667778889999874
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.34 Score=41.91 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCeEE-EEcC--ch---HHHHHHHHhCCCcEEEEeCcHH---HHHHHHHhCCCceEEEeeccCCCC-----C-----CCC
Q 023974 117 SSKVL-VSIS--SE---EFVDRVVESSPSLLLVVHDSLF---VLAGIKEKYDTVKCWQGELIYVPD-----K-----WGP 177 (274)
Q Consensus 117 ~~rVL-vGcG--TG---~l~~~L~~~~~~~V~gVD~S~~---ML~~Ar~k~~~v~~~~gDae~LPf-----~-----~~s 177 (274)
+.+|| .|++ .| .++..|++++ .+|+++|-+++ .++..++..+.+.++++|+.+... + -+.
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG 86 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHT-CEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788 7764 33 3344556666 58999998865 444444555567888999876321 0 137
Q ss_pred ccEEEecccCc
Q 023974 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
+|+++.+.+..
T Consensus 87 iD~lv~~Ag~~ 97 (261)
T 2wyu_A 87 LDYLVHAIAFA 97 (261)
T ss_dssp EEEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999887653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.38 E-value=0.93 Score=39.51 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=50.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC----------CCCCccEE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD----------KWGPLDVV 181 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD~V 181 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|.+++-++...+..+++.++++|+.+... .-+.+|++
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 86 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV 86 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 356788 766554 3344455555 58999999998888777777778889999866321 01378999
Q ss_pred EecccCc
Q 023974 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 87 v~nAg~~ 93 (270)
T 1yde_A 87 VNNAGHH 93 (270)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9887653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.69 Score=39.34 Aligned_cols=73 Identities=14% Similarity=0.015 Sum_probs=49.5
Q ss_pred CCCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC------CCCCCccEEEe
Q 023974 115 DESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP------DKWGPLDVVFL 183 (274)
Q Consensus 115 ~~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP------f~~~sFD~V~~ 183 (274)
.++.+|| .|++.| .++..|++.+ .+|+.+|-+++-++...+.. ..+.+..+|+.+.. ...+..|+++.
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~ 90 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVC 90 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence 4567888 776655 3344555555 58999999999888776654 46788888876532 12257999998
Q ss_pred cccCc
Q 023974 184 YFLPA 188 (274)
Q Consensus 184 ~f~l~ 188 (274)
+.+..
T Consensus 91 ~Ag~~ 95 (249)
T 3f9i_A 91 NAGIT 95 (249)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 87643
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.28 E-value=0.18 Score=43.82 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=45.0
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCC----------CC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf----------~~ 175 (274)
+.+|| .|++.| .++..|++++ .+|+++|-+++-++.+.+.. .++.++++|+.+... .-
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 84 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence 45777 665544 3344455555 58999999988777655433 246788888765321 01
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+..|+++.+.+..
T Consensus 85 g~id~lv~~Ag~~ 97 (278)
T 1spx_A 85 GKLDILVNNAGAA 97 (278)
T ss_dssp SCCCEEEECCC--
T ss_pred CCCCEEEECCCCC
Confidence 3799999887653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.61 Score=41.94 Aligned_cols=72 Identities=7% Similarity=0.025 Sum_probs=49.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC--CceEEEeeccCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD--TVKCWQGELIYVP----------DKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~--~v~~~~gDae~LP----------f~~ 175 (274)
.+.+|| .|++.| .++..|++++ .+|+++|-+++-++.+.+. .. .+.++++|+.+.. ..-
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 356888 777665 3445555556 5899999999877766543 23 5788899986632 012
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+.+|+|+.+.+..
T Consensus 86 g~id~lv~nAg~~ 98 (319)
T 3ioy_A 86 GPVSILCNNAGVN 98 (319)
T ss_dssp CCEEEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 5789999887753
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.15 E-value=0.78 Score=39.84 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----C--CCceEEEeeccCCCC----------CCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----Y--DTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~--~~v~~~~gDae~LPf----------~~~ 176 (274)
+.+|| .|++.| .++..|++.+ .+|+++|-+++-++...+. . ..+.++++|+.+... ..+
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45788 665443 2333444455 5899999998766654432 1 246788888765321 013
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
.+|+|+.+.+..
T Consensus 111 ~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 111 GVDICINNAGLA 122 (279)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999887643
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.59 Score=41.94 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=68.6
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-------CC-CcEEEEe-----Cc----------------------HHH
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVES-------SP-SLLLVVH-----DS----------------------LFV 150 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-------~~-~~V~gVD-----~S----------------------~~M 150 (274)
.+.+.+.--+| .|+ +||-.|.-+..++.. ++ .+|+|.| +. .+.
T Consensus 61 ~l~~~i~~vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~ 139 (257)
T 3tos_A 61 ALYRQVLDVPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAY 139 (257)
T ss_dssp HHHHHTTTSCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHH
T ss_pred HHHHHhhCCCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHH
Confidence 33333333344 789 999999876665431 33 7999999 32 123
Q ss_pred HHHHHH------hC----CCceEEEeeccC-CCC-----CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 151 LAGIKE------KY----DTVKCWQGELIY-VPD-----KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 151 L~~Ar~------k~----~~v~~~~gDae~-LPf-----~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++..+ ++ +++++++|++.+ ||. ..++||.|++=.- .-..-..+++.+...|+|||.+++-+
T Consensus 140 l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 140 LKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcC
Confidence 433221 23 458999999977 442 3457999998753 22233568999999999999999854
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=91.00 E-value=0.75 Score=39.42 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=46.9
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCCc
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~sF 178 (274)
+.++| .|++.| .++..|++.+ .+|+.+|-+++-++...+. ..++.++++|+.+... .-+.+
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 85 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL 85 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 56788 776654 3344455555 5899999998877665543 3457888888865321 11479
Q ss_pred cEEEecccCc
Q 023974 179 DVVFLYFLPA 188 (274)
Q Consensus 179 D~V~~~f~l~ 188 (274)
|+++.+.+..
T Consensus 86 d~lv~nAg~~ 95 (247)
T 2jah_A 86 DILVNNAGIM 95 (247)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999887643
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.9 Score=39.77 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=58.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc-HHHHHHHHH----hCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS-LFVLAGIKE----KYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S-~~ML~~Ar~----k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.. .+-++...+ ....+.++++|+.+... ..+
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEG-AAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG 108 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456788 777665 3444555555 488888554 444443332 23467888998866321 113
Q ss_pred CccEEEecccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPF-----PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+..... +.+ .+++.+.+.++++|+++..
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 799999887653221 111 2455667778889998873
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.074 Score=48.87 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=0.0
Q ss_pred eEE-EeeccCC--CCCCCCccEEEec--ccCc---------CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 162 KCW-QGELIYV--PDKWGPLDVVFLY--FLPA---------MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 162 ~~~-~gDae~L--Pf~~~sFD~V~~~--f~l~---------~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.++ +||+.+. -..+++||+|++- |... +.......+.++.|+|||||.++|
T Consensus 40 ~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i 104 (319)
T 1eg2_A 40 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 104 (319)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEE
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.85 E-value=0.65 Score=40.19 Aligned_cols=72 Identities=18% Similarity=0.047 Sum_probs=46.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh------CCCceEEEeeccCCCC----------CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK------YDTVKCWQGELIYVPD----------KW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k------~~~v~~~~gDae~LPf----------~~ 175 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|.+++-++.+.+. ..++.++++|+.+... .-
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 90 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 90 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788 776554 3344555555 5899999998876654432 2357788899866321 11
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+.+|+++.+.+..
T Consensus 91 g~id~lv~nAg~~ 103 (267)
T 1iy8_A 91 GRIDGFFNNAGIE 103 (267)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCCcC
Confidence 3689999887653
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.83 E-value=0.24 Score=42.57 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=43.9
Q ss_pred CCCeEE-EEcCchHHHH----HHHHhCCCcEEEEeC-cHHHHHHHHHh----CCCceEEEeeccCCCC-----C-----C
Q 023974 116 ESSKVL-VSISSEEFVD----RVVESSPSLLLVVHD-SLFVLAGIKEK----YDTVKCWQGELIYVPD-----K-----W 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~----~L~~~~~~~V~gVD~-S~~ML~~Ar~k----~~~v~~~~gDae~LPf-----~-----~ 175 (274)
.+.+|| .|+ +|-++. .|++++ .+|+++|- +++-++...+. ..++.++++|+.+... . -
T Consensus 20 ~~k~vlItGa-sggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 20 AGKVALTTGA-GRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC-CEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 345788 665 444444 444455 58999998 77665544332 3467888999865321 0 1
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+.+|+|+.+.+..
T Consensus 98 ~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 98 GGLDFVMSNSGME 110 (274)
T ss_dssp SCEEEEECCCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3789999886643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.82 E-value=0.45 Score=41.29 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=49.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~s 177 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|-+++-++.+.+. ..++.++++|+.+... .-+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQG-ADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR 88 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 466888 777665 3445555556 5899999999887766544 3467888999866431 1247
Q ss_pred ccEEEecccC
Q 023974 178 LDVVFLYFLP 187 (274)
Q Consensus 178 FD~V~~~f~l 187 (274)
.|+++.+.+.
T Consensus 89 id~lv~nAg~ 98 (264)
T 3ucx_A 89 VDVVINNAFR 98 (264)
T ss_dssp CSEEEECCCS
T ss_pred CcEEEECCCC
Confidence 9999988654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.7 Score=40.44 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=45.9
Q ss_pred CCCeEE-EEcC--c--h-HHHHHHHHhCCCcEEEEeCcHH---HHHHHHHhCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSIS--S--E-EFVDRVVESSPSLLLVVHDSLF---VLAGIKEKYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcG--T--G-~l~~~L~~~~~~~V~gVD~S~~---ML~~Ar~k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++ . | .++..|++.+ .+|+++|-+++ .++..++..+++.++++|+.+... .-+
T Consensus 20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 98 (285)
T 2p91_A 20 EGKRALITGVANERSIAYGIAKSFHREG-AQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG 98 (285)
T ss_dssp TTCEEEECCCSSTTSHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356788 7764 2 3 2344455555 58999998864 444444555667888999866321 124
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
.+|+++.+.+..
T Consensus 99 ~iD~lv~~Ag~~ 110 (285)
T 2p91_A 99 SLDIIVHSIAYA 110 (285)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999887653
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.58 Score=41.23 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=49.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.+++-++.+.+.. .++.++++|+.+... .-+..|+
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 106 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK 106 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 356788 676655 3445555556 59999999998887776654 467888999866421 1147899
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
++.+.+..
T Consensus 107 lvnnAg~~ 114 (277)
T 3gvc_A 107 LVANAGVV 114 (277)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99887653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=1.5 Score=43.86 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=86.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC---------CCcEEEEeCcHHHHHHHHHh---------C------
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS---------PSLLLVVHDSLFVLAGIKEK---------Y------ 158 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~---------~~~V~gVD~S~~ML~~Ar~k---------~------ 158 (274)
.+++.++...-.+...|+ +|||-=....+|.... ..+++=||+-..+-.+.+.- .
T Consensus 95 ~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~ 174 (695)
T 2zwa_A 95 RLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDK 174 (695)
T ss_dssp HHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSC
T ss_pred HHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccc
Confidence 344444432112345688 9999998888886541 14678888887665543311 0
Q ss_pred -------------CCceEEEeeccCCCC-----C-----CCCccEEE-ecccCcCCC--CHHHHHHHHHHhcCCCCEEEE
Q 023974 159 -------------DTVKCWQGELIYVPD-----K-----WGPLDVVF-LYFLPAMPF--PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 159 -------------~~v~~~~gDae~LPf-----~-----~~sFD~V~-~~f~l~~~~--d~~~al~el~RvLKPGGrlvI 212 (274)
++..++-+|+.++.. . +..--.++ +-.++-.+. +-++.++.+.+ + |+|.+++
T Consensus 175 ~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~ 252 (695)
T 2zwa_A 175 DYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFII 252 (695)
T ss_dssp SSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEE
T ss_pred ccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEE
Confidence 145677788876421 0 22222333 334554442 23355666664 4 6777777
Q ss_pred EcCCC---------hhHHHHHHhh-CcccccccCCCHHHHHHHHHhCCCcEeEEEecC
Q 023974 213 SHPQG---------REALQKQRKQ-FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 213 s~~~g---------r~~l~~~~~~-~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
.+... +..++.+... -.-..+..+|+.++..+.+.++||+.+...+-.
T Consensus 253 ~e~~~~~~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~ 310 (695)
T 2zwa_A 253 LEQLIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMF 310 (695)
T ss_dssp EEECCTTCTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHH
T ss_pred EEeecCCCCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHH
Confidence 43211 1111111111 112245678999999999999999877665533
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.42 Score=41.19 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=45.9
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCC----------CCCCc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf----------~~~sF 178 (274)
.+.+|| .|++.| .++..|++++ .+|+++|-+.+-++...+... ++.++++|+.+... ..+..
T Consensus 15 ~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 93 (278)
T 2bgk_A 15 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 93 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 356788 666544 2344445555 589999999877765544332 57888999865321 01378
Q ss_pred cEEEecccC
Q 023974 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 94 d~li~~Ag~ 102 (278)
T 2bgk_A 94 DIMFGNVGV 102 (278)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCcc
Confidence 999988664
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.71 Score=40.34 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=55.5
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHH-HHHHH----HHhCCCceEEEeeccCCCC----------CCCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLF-VLAGI----KEKYDTVKCWQGELIYVPD----------KWGP 177 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~-ML~~A----r~k~~~v~~~~gDae~LPf----------~~~s 177 (274)
+.+|| .|++.| .++..|++.+ .+|+++|-+.+ .++.+ ++...++.++++|+.+... .-+.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 107 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 107 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45778 666554 2344445555 58999987743 23322 2223467888888755320 1147
Q ss_pred ccEEEecccCcCCC-----CHHH--------------HHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPF-----PLDQ--------------VFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~-----d~~~--------------al~el~RvLKPGGrlvIs 213 (274)
.|+++.+.+..... +.+. .++.+.+.++.+|+++..
T Consensus 108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 89999887654321 1211 334556666778998873
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.78 Score=40.56 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=57.6
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHH-HHHHHHH---h-CCCceEEEeeccCCCC----------CCCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLF-VLAGIKE---K-YDTVKCWQGELIYVPD----------KWGP 177 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~-ML~~Ar~---k-~~~v~~~~gDae~LPf----------~~~s 177 (274)
+.+|| .|++.| .++..|++.+ .+|+.+|.+.+ ..+.+.+ + ..++.++++|+.+... .-+.
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 125 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEG-ANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS 125 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56788 776665 3344555555 58999988754 3333222 2 2467888999866321 1147
Q ss_pred ccEEEecccCcCCC------CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPF------PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~------d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
.|+++.+.+..... +.+ ..++.+.+.++.+|+++..
T Consensus 126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 89999886643211 111 2345566677889998874
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=2.3 Score=36.21 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcH--HHHHHHHHhCC--CceEEEeeccCC-C-----CC-----CC
Q 023974 117 SSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSL--FVLAGIKEKYD--TVKCWQGELIYV-P-----DK-----WG 176 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~--~ML~~Ar~k~~--~v~~~~gDae~L-P-----f~-----~~ 176 (274)
+.+|| .|++ |-++.. |++++...|+.+|-++ +.++..++..+ ++.++++|+.+. . ++ .+
T Consensus 5 ~k~vlVtGas-~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 83 (254)
T 1sby_A 5 NKNVIFVAAL-GGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK 83 (254)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CcEEEEECCC-ChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence 56788 7654 445444 4444532388888775 55665555543 577888998654 1 00 13
Q ss_pred CccEEEecccCcCCCCHHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLDQVF 197 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al 197 (274)
.+|+|+.+.+.....+.++.+
T Consensus 84 ~id~lv~~Ag~~~~~~~~~~~ 104 (254)
T 1sby_A 84 TVDILINGAGILDDHQIERTI 104 (254)
T ss_dssp CCCEEEECCCCCCTTCHHHHH
T ss_pred CCCEEEECCccCCHHHHhhhh
Confidence 789999988765555555443
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.56 Score=41.73 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=49.9
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~s 177 (274)
.+.+|| .|++.| .++..|++++ .+|+++|-+++-++.+.+. ..++.++++|+.+... ..+.
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRG-ARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 456888 777765 3445555556 5899999999888776544 3467888999876431 0147
Q ss_pred ccEEEecccCc
Q 023974 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
.|+++.+.+..
T Consensus 109 id~lvnnAg~~ 119 (301)
T 3tjr_A 109 VDVVFSNAGIV 119 (301)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCcC
Confidence 99999887654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.51 E-value=1.3 Score=38.41 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=47.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC---------CCCCCccEE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP---------DKWGPLDVV 181 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP---------f~~~sFD~V 181 (274)
.+.+|| .|++.| .++..|++++ .+|+.+|.+++-++.+.+..+ ++.++++|+.+.. ...+..|++
T Consensus 29 ~~k~vlVTGas~GIG~aia~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l 107 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEATVRRLHADG-LGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA 107 (281)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence 345788 777665 3444555556 589999999998888776653 5788898876532 223578999
Q ss_pred Eec
Q 023974 182 FLY 184 (274)
Q Consensus 182 ~~~ 184 (274)
+.+
T Consensus 108 v~~ 110 (281)
T 3ppi_A 108 VVA 110 (281)
T ss_dssp EEC
T ss_pred EEc
Confidence 877
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=90.51 E-value=0.5 Score=39.38 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=54.1
Q ss_pred eEE-EEcCchHHH----HHHH-HhCCCcEEEEeCcHH-HHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEecccCc
Q 023974 119 KVL-VSISSEEFV----DRVV-ESSPSLLLVVHDSLF-VLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 119 rVL-vGcGTG~l~----~~L~-~~~~~~V~gVD~S~~-ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l~ 188 (274)
+|| .| |||.++ ..|+ +.+ .+|++++-+++ -++...+..+++.++++|+.+.. ..-+.+|+|+.+.+..
T Consensus 7 ~vlVtG-asg~iG~~~~~~l~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~ 84 (221)
T 3r6d_A 7 YITILG-AAGQIAQXLTATLLTYTD-MHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES 84 (221)
T ss_dssp EEEEES-TTSHHHHHHHHHHHHHCC-CEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred EEEEEe-CCcHHHHHHHHHHHhcCC-ceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence 478 66 444444 3444 344 59999999988 66555445678899999986532 1114689999988765
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvI 212 (274)
++. .+.+++.+.+ ...|+++.
T Consensus 85 n~~-~~~~~~~~~~--~~~~~iv~ 105 (221)
T 3r6d_A 85 GSD-MASIVKALSR--XNIRRVIG 105 (221)
T ss_dssp HHH-HHHHHHHHHH--TTCCEEEE
T ss_pred Chh-HHHHHHHHHh--cCCCeEEE
Confidence 543 2333333221 12357765
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.51 E-value=0.66 Score=41.65 Aligned_cols=88 Identities=9% Similarity=0.133 Sum_probs=56.6
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceE-------------EEeeccCCCCCCCCccEE
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKC-------------WQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~-------------~~gDae~LPf~~~sFD~V 181 (274)
.+|. ||+|. | .++..|.+.+ .+|+++|.+++-++..+++.. +.+ ...|.++ .-...|+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~v 79 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDRGA-IIAEGPGLAGTAHPDLLTSDIGL---AVKDADVI 79 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHTS-EEEESSSCCEEECCSEEESCHHH---HHTTCSEE
T ss_pred CeEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHhcCC-eEEeccccccccccceecCCHHH---HHhcCCEE
Confidence 4789 99987 4 3444555555 489999999998888877642 111 1112211 11468999
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+.-.. ..+++++++...+++|..++..
T Consensus 80 i~~v~~~---~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 80 LIVVPAI---HHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EECSCGG---GHHHHHHHHGGGCCTTCEEEES
T ss_pred EEeCCch---HHHHHHHHHHHhCCCCCEEEEc
Confidence 9774322 2368889999999997765544
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.50 E-value=1.3 Score=42.08 Aligned_cols=75 Identities=7% Similarity=0.081 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh---C----C-CcEEEEeCcHHHHHHHHHhCCC---ceEEE
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES---S----P-SLLLVVHDSLFVLAGIKEKYDT---VKCWQ 165 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~---~----~-~~V~gVD~S~~ML~~Ar~k~~~---v~~~~ 165 (274)
|..-..|+....+.++....-+|+ +|.|+|.++..+++. . . .++..||.|+.+.++=+++... +. |.
T Consensus 62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~-W~ 140 (387)
T 1zkd_A 62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIH-WH 140 (387)
T ss_dssp HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEE-EE
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeE-Ee
Confidence 333334666666666655555688 999999997766542 1 1 4799999999988766665543 44 44
Q ss_pred eeccCCCC
Q 023974 166 GELIYVPD 173 (274)
Q Consensus 166 gDae~LPf 173 (274)
.+++++|.
T Consensus 141 ~~l~~lp~ 148 (387)
T 1zkd_A 141 DSFEDVPE 148 (387)
T ss_dssp SSGGGSCC
T ss_pred CChhhcCC
Confidence 56677773
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.42 Score=42.07 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCC----------CCCCccEE
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPD----------KWGPLDVV 181 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf----------~~~sFD~V 181 (274)
+.+|| .|++.| .++..|++.+ .+|+.+|.+.+-++...+..+ ++.++++|+.+... ..+..|++
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 83 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL 83 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 56788 777665 3445555556 599999999998887776653 57888999866321 12478999
Q ss_pred EecccC
Q 023974 182 FLYFLP 187 (274)
Q Consensus 182 ~~~f~l 187 (274)
+.+.+.
T Consensus 84 vnnAg~ 89 (281)
T 3zv4_A 84 IPNAGI 89 (281)
T ss_dssp ECCCCC
T ss_pred EECCCc
Confidence 988765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.38 Score=43.83 Aligned_cols=67 Identities=7% Similarity=-0.152 Sum_probs=51.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc----eEEEeeccCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV----KCWQGELIYVP 172 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v----~~~~gDae~LP 172 (274)
.++++++.. -.+|+.|| --||+|..+.+..+.+ .+.+|+|+++.+.+.|++|...+ ..+++|+.+++
T Consensus 241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~i~ 312 (323)
T 1boo_A 241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDNNISEEKITDIYNRIL 312 (323)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 456666554 47889999 9999999887777666 49999999999999999987542 34456665554
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.5 Score=41.84 Aligned_cols=88 Identities=8% Similarity=0.041 Sum_probs=56.3
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-----------------------CceEEEeeccCC
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-----------------------TVKCWQGELIYV 171 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-----------------------~v~~~~gDae~L 171 (274)
.+|. ||+|+ | .++..++..+ .+|+..|.+++-++.++++.. .+.+ ..|.++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~- 81 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHG-FAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ- 81 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH-
Confidence 4788 99887 3 3444555555 489999999999988876410 1122 223222
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
.-...|+|+.+... ...-...+++++...++||..++
T Consensus 82 --~~~~aDlVi~av~~-~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 82 --AVKDADLVIEAVPE-SLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp --HTTTCSEEEECCCS-CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --HhccCCEEEEeccC-cHHHHHHHHHHHHhhCCCCcEEE
Confidence 12457999976432 22234678899999999977654
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.34 E-value=1.1 Score=39.57 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=57.8
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc--HHHHHHHHH---h-CCCceEEEeeccCCCC----------CCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS--LFVLAGIKE---K-YDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S--~~ML~~Ar~---k-~~~v~~~~gDae~LPf----------~~~ 176 (274)
+.+|| .|++.| .++..|++.+ .+|+.+|.+ .+-++...+ + ..++.++++|+.+... .-+
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 127 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREG-ADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG 127 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56788 776655 3344555555 489998886 333433332 2 3467888888765321 115
Q ss_pred CccEEEecccCcCC-C-----CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMP-F-----PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~-~-----d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+.... . +.+ ...+.+.+.++++|+++..
T Consensus 128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 79999988765321 1 111 2344556678889999874
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.31 E-value=1.6 Score=35.99 Aligned_cols=91 Identities=12% Similarity=-0.017 Sum_probs=56.9
Q ss_pred eEE-EEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC-CCCCccEEEecccCcCCCC
Q 023974 119 KVL-VSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD-KWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf-~~~sFD~V~~~f~l~~~~d 192 (274)
+|| .| |||.++..+ ++++ .+|++++-++.-++.. ..++++++++|+.+... .-+.+|+|+.+.+..+..+
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~ 77 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRG-HEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSG 77 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSS
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCC-CEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCCcc
Confidence 577 55 556555544 4444 5999999998765433 23578999999876542 1256899998876643211
Q ss_pred ----HHHHHHHHHHhcCC-CCEEEEE
Q 023974 193 ----LDQVFETLANRCSP-GARVVIS 213 (274)
Q Consensus 193 ----~~~al~el~RvLKP-GGrlvIs 213 (274)
.-...+.+.+.++. |+++++.
T Consensus 78 ~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 78 RGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 12344555666554 5677764
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=90.15 E-value=1.1 Score=39.25 Aligned_cols=87 Identities=10% Similarity=-0.018 Sum_probs=55.2
Q ss_pred CeEE-EEcCc--hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 118 SKVL-VSISS--EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 118 ~rVL-vGcGT--G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.+|. ||+|. +.++..|.+.+. .+|++.|.+++-++.+++.. .......|.++ .-...|+|+.+.-... .
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g-~~~~~~~~~~~---~~~~aDvVilavp~~~---~ 79 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERG-IVDEATADFKV---FAALADVIILAVPIKK---T 79 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTT-SCSEEESCTTT---TGGGCSEEEECSCHHH---H
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcC-CcccccCCHHH---hhcCCCEEEEcCCHHH---H
Confidence 4788 99987 345556666643 58999999999888776532 11112223222 1245799998743322 3
Q ss_pred HHHHHHHHHh-cCCCCEEE
Q 023974 194 DQVFETLANR-CSPGARVV 211 (274)
Q Consensus 194 ~~al~el~Rv-LKPGGrlv 211 (274)
+++++++... ++||..++
T Consensus 80 ~~v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 80 IDFIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHHHTSCCCTTCEEE
T ss_pred HHHHHHHHhcCCCCCCEEE
Confidence 6778888777 88876554
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.09 E-value=0.52 Score=41.97 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=55.1
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeC--cHHHHHHHHHhCCCce-------EEEeeccCCCCCCCCccEEEeccc
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHD--SLFVLAGIKEKYDTVK-------CWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~--S~~ML~~Ar~k~~~v~-------~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+|. ||+|. | .++..|++.+ .+|+++|. +++-++..+++..++. +...+.+++...-...|+|+.+.-
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNG-NEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHC-CEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred EEEEECcCHHHHHHHHHHHhCC-CeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 577 99886 4 3455566666 48999999 9998888776542111 011110011111246899998743
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.. ..+.+++++.. ++||..++.
T Consensus 81 ~~---~~~~v~~~i~~-l~~~~~vv~ 102 (335)
T 1txg_A 81 TD---GVLPVMSRILP-YLKDQYIVL 102 (335)
T ss_dssp GG---GHHHHHHHHTT-TCCSCEEEE
T ss_pred hH---HHHHHHHHHhc-CCCCCEEEE
Confidence 32 46788899888 888765544
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.62 Score=39.76 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=45.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----------CCceEEEeeccCCCC-----C-
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----------DTVKCWQGELIYVPD-----K- 174 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----------~~v~~~~gDae~LPf-----~- 174 (274)
.+.+|| .|++.| .++..|++++ .+|+++|-+++-++...+.. .++.++++|+.+... +
T Consensus 6 ~~k~vlITGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 84 (264)
T 2pd6_A 6 RSALALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ 84 (264)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence 345788 665544 2334445555 58999999988777665543 457888999866321 0
Q ss_pred ----CCCc-cEEEecccCc
Q 023974 175 ----WGPL-DVVFLYFLPA 188 (274)
Q Consensus 175 ----~~sF-D~V~~~f~l~ 188 (274)
-+.. |+|+.+.+..
T Consensus 85 ~~~~~g~i~d~vi~~Ag~~ 103 (264)
T 2pd6_A 85 VQACFSRPPSVVVSCAGIT 103 (264)
T ss_dssp HHHHHSSCCSEEEECCCCC
T ss_pred HHHHhCCCCeEEEECCCcC
Confidence 1234 9999886643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.34 Score=42.04 Aligned_cols=97 Identities=8% Similarity=0.044 Sum_probs=57.4
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEE-eCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVV-HDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gV-D~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++.| .++..|++++ .+|+.+ +.+.+-++.+.+. ..++.++++|+.+... .-+
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEG-ANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788 777665 3344555555 488888 6666555444332 3467888999866321 114
Q ss_pred CccEEEecccCc-C---CC--CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPA-M---PF--PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~-~---~~--d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+.. . .. +.+ ...+.+.+.++++|+++..
T Consensus 86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 799999886533 1 11 111 2334455666778888873
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.51 Score=41.52 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=49.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.+++-++...+.. ..+.++++|+.+... ..+..|+
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 104 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV 104 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 356788 776665 3344555555 59999999998887766554 467888888866321 1147999
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
++.+.+..
T Consensus 105 lv~nAg~~ 112 (277)
T 4dqx_A 105 LVNNAGFG 112 (277)
T ss_dssp EEECCCCC
T ss_pred EEECCCcC
Confidence 99887653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.79 E-value=0.52 Score=41.93 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=46.2
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC---CceEEEeeccCCCC----------C
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD---TVKCWQGELIYVPD----------K 174 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~---~v~~~~gDae~LPf----------~ 174 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|-+++-++...+. .. ++.++++|+.+... .
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 103 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 103 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence 356778 665554 3344455555 5899999998877655433 22 57888899865321 1
Q ss_pred CCCccEEEecccCc
Q 023974 175 WGPLDVVFLYFLPA 188 (274)
Q Consensus 175 ~~sFD~V~~~f~l~ 188 (274)
-+.+|+++.+.+..
T Consensus 104 ~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 104 FGKIDILVNNAGAN 117 (297)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCcC
Confidence 14789999887643
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.74 E-value=1.4 Score=37.63 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=47.3
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCC----------CCCCccEEE
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPD----------KWGPLDVVF 182 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf----------~~~sFD~V~ 182 (274)
+.+|| .|++.| .++..|++++ .+|+++|-+++-++...+... +.++++|+.+... ..+..|+++
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv 82 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEAVG-AHPVVMDVADPASVERGFAEALAHLGRLDGVV 82 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTT-CEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHcC-CEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 46788 776554 3344455555 589999999888777666554 7888888765321 014689999
Q ss_pred ecccCc
Q 023974 183 LYFLPA 188 (274)
Q Consensus 183 ~~f~l~ 188 (274)
.+.+..
T Consensus 83 n~Ag~~ 88 (245)
T 1uls_A 83 HYAGIT 88 (245)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 887653
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=89.70 E-value=0.49 Score=41.50 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcH-HHHHHHHHh-----CCCceEEEeeccCC----C-----C---
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSL-FVLAGIKEK-----YDTVKCWQGELIYV----P-----D--- 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~-~ML~~Ar~k-----~~~v~~~~gDae~L----P-----f--- 173 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.++ +-++.+.+. ..++.++++|+.+. . +
T Consensus 22 ~~k~~lVTGas~gIG~aia~~L~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~ 100 (288)
T 2x9g_A 22 EAPAAVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC 100 (288)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHHT-CEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence 356788 666555 3444556666 5899999886 555443322 23578889998762 1 0
Q ss_pred --CCCCccEEEecccC
Q 023974 174 --KWGPLDVVFLYFLP 187 (274)
Q Consensus 174 --~~~sFD~V~~~f~l 187 (274)
..+..|+++.+.+.
T Consensus 101 ~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 101 FRAFGRCDVLVNNASA 116 (288)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHhcCCCCEEEECCCC
Confidence 11479999988764
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.66 E-value=0.7 Score=40.26 Aligned_cols=72 Identities=13% Similarity=0.003 Sum_probs=47.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------C-CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------K-WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~-~~ 176 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|-+++-++.+.+. ..++.++++|+.+... . ++
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 98 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 98 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 356788 776554 3344455555 5899999998876654432 3467888888765321 0 16
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
.+|+++.+.+..
T Consensus 99 ~id~lv~nAg~~ 110 (273)
T 1ae1_A 99 KLNILVNNAGVV 110 (273)
T ss_dssp CCCEEEECCCCC
T ss_pred CCcEEEECCCCC
Confidence 899999887653
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=1.5 Score=37.75 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=46.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC-----C------CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD-----K------WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf-----~------~~ 176 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|-+++-++...+. ..++.++++|+.+... + .+
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 86 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 86 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 356788 666554 3344455555 5899999998876654433 2357788899866320 0 16
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
..|+++.+.+..
T Consensus 87 ~id~lv~~Ag~~ 98 (260)
T 2ae2_A 87 KLNILVNNAGIV 98 (260)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999887653
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=89.46 E-value=1.1 Score=38.55 Aligned_cols=72 Identities=6% Similarity=0.032 Sum_probs=47.6
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCC-----C-----CCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPD-----K-----WGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf-----~-----~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|.+++-++...+... ++.++++|+.+... + -+.+|+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~ 89 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAAIARALDKAG-ATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL 89 (263)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 356788 665554 2344455555 599999999988777666554 57788888765321 0 137899
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
|+.+.+..
T Consensus 90 lv~~Ag~~ 97 (263)
T 3ak4_A 90 LCANAGVS 97 (263)
T ss_dssp EEECCCCC
T ss_pred EEECCCcC
Confidence 99887643
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.45 E-value=1.1 Score=38.95 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=47.6
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc------------HHHHHHHHH----hCCCceEEEeeccCCCC--
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS------------LFVLAGIKE----KYDTVKCWQGELIYVPD-- 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S------------~~ML~~Ar~----k~~~v~~~~gDae~LPf-- 173 (274)
.+.+|| .|++.| .++..|++++ .+|+++|.+ .+-++...+ ...++.++++|+.+...
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADG-ADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 456788 776655 3445555556 589999987 665554433 24568889999866321
Q ss_pred --------CCCCccEEEecccCcC
Q 023974 174 --------KWGPLDVVFLYFLPAM 189 (274)
Q Consensus 174 --------~~~sFD~V~~~f~l~~ 189 (274)
.-+..|+++.+.+...
T Consensus 91 ~~~~~~~~~~g~id~lv~nAg~~~ 114 (278)
T 3sx2_A 91 AALQAGLDELGRLDIVVANAGIAP 114 (278)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC
Confidence 1147999999877543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.54 Score=41.33 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCC---------CCCc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDK---------WGPL 178 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~---------~~sF 178 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.+++-++.+.+. ..++.++++|+.+...- .+..
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i 110 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAG-AHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV 110 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 356788 666555 3344555556 5899999887665554433 45688889998664310 1478
Q ss_pred cEEEecccCc
Q 023974 179 DVVFLYFLPA 188 (274)
Q Consensus 179 D~V~~~f~l~ 188 (274)
|+++.+.+..
T Consensus 111 D~lvnnAg~~ 120 (275)
T 4imr_A 111 DILVINASAQ 120 (275)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999887653
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.32 E-value=1.6 Score=37.72 Aligned_cols=87 Identities=7% Similarity=0.094 Sum_probs=55.6
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
.+|. ||||. | .++..|.+.+...|+++|.+++-++.+.+++. +.. ..|.+++ -...|+|+.+.-.. ..+
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~---~~~~Dvvi~av~~~---~~~ 82 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVE-AEY-TTDLAEV---NPYAKLYIVSLKDS---AFA 82 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTT-CEE-ESCGGGS---CSCCSEEEECCCHH---HHH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC-Cce-eCCHHHH---hcCCCEEEEecCHH---HHH
Confidence 4788 99985 3 34455555553238999999999888877654 322 2344333 23589999874332 236
Q ss_pred HHHHHHHHhcCCCCEEEE
Q 023974 195 QVFETLANRCSPGARVVI 212 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvI 212 (274)
++++++...++||..++-
T Consensus 83 ~v~~~l~~~~~~~~ivv~ 100 (266)
T 3d1l_A 83 ELLQGIVEGKREEALMVH 100 (266)
T ss_dssp HHHHHHHTTCCTTCEEEE
T ss_pred HHHHHHHhhcCCCcEEEE
Confidence 777888778878665543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.31 E-value=0.44 Score=41.35 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=47.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|.+.| .++..|++.+ .+|+.+|-+++-++.+.+.. .++.++++|+.+... ..+
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAG-ANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG 87 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 356788 665554 3344555555 59999999998877665432 367888999866321 113
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
..|+++.+.+..
T Consensus 88 ~id~lvnnAg~~ 99 (262)
T 3pk0_A 88 GIDVVCANAGVF 99 (262)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 799999887643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=1.8 Score=40.76 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=54.6
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------------------CceEEEeeccCCCCCCCC
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------------------TVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------------------~v~~~~gDae~LPf~~~s 177 (274)
+|. ||+|. | .++..|++.+ .+|+++|.+++-++..++... .+.+ ..|.++ .-..
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G-~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~---~~~~ 76 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKK---AVLD 76 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHH---HHHT
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHH---Hhcc
Confidence 577 88886 3 3455566656 489999999998888776421 1211 122211 1134
Q ss_pred ccEEEeccc-CcC---CCC---HHHHHHHHHHhcCC---CCEEEE
Q 023974 178 LDVVFLYFL-PAM---PFP---LDQVFETLANRCSP---GARVVI 212 (274)
Q Consensus 178 FD~V~~~f~-l~~---~~d---~~~al~el~RvLKP---GGrlvI 212 (274)
.|+|+++.. +.. ..| .+++++++.+.|+| |..++.
T Consensus 77 aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~ 121 (436)
T 1mv8_A 77 SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV 121 (436)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 799987742 221 112 67899999999998 544443
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=89.24 E-value=0.79 Score=39.40 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=46.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----CCceEEEeec--cCCC----------CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----DTVKCWQGEL--IYVP----------DK 174 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~~v~~~~gDa--e~LP----------f~ 174 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|.+++-++.+.+.. ..+.++++|+ .+.. ..
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYG-ATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN 89 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence 456788 776655 3344555555 59999999988776655432 3678888887 3221 11
Q ss_pred CCCccEEEecccC
Q 023974 175 WGPLDVVFLYFLP 187 (274)
Q Consensus 175 ~~sFD~V~~~f~l 187 (274)
.+..|+++.+.+.
T Consensus 90 ~g~id~lv~nAg~ 102 (252)
T 3f1l_A 90 YPRLDGVLHNAGL 102 (252)
T ss_dssp CSCCSEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 2479999988765
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=89.22 E-value=4.1 Score=35.48 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCchHHHHHH----HHhCCCcEEEEeCcHHHHHHHHHh----C-CCceEE-EeeccCCCCC---CCCccE
Q 023974 114 IDESSKVLVSISSEEFVDRV----VESSPSLLLVVHDSLFVLAGIKEK----Y-DTVKCW-QGELIYVPDK---WGPLDV 180 (274)
Q Consensus 114 ~~~~~rVLvGcGTG~l~~~L----~~~~~~~V~gVD~S~~ML~~Ar~k----~-~~v~~~-~gDae~LPf~---~~sFD~ 180 (274)
...+.+|||--|||-++..+ ++.+ .+|+++|-+..-++...+. . ++++++ ++|+.+...- -..+|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 34567888444566665554 4444 5899999987755444332 2 468888 7998764321 236899
Q ss_pred EEecccCcC-CCCHHHHH-------HHHHHhcC--CC-CEEEEE
Q 023974 181 VFLYFLPAM-PFPLDQVF-------ETLANRCS--PG-ARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~-~~d~~~al-------~el~RvLK--PG-GrlvIs 213 (274)
|+.+.+... ..++++.+ ..+.+.++ .| ++++..
T Consensus 87 vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~ 130 (342)
T 1y1p_A 87 VAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130 (342)
T ss_dssp EEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe
Confidence 998765433 23444322 34445443 23 688763
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.21 E-value=1.3 Score=37.48 Aligned_cols=71 Identities=7% Similarity=-0.057 Sum_probs=48.3
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC----------CCCCCc
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DKWGPL 178 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~~~sF 178 (274)
+.+|| .|++.| .++..|++++ .+|+++|-+++-++...+. ..++.++++|+.+.. ...+..
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI 83 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45788 676554 3445555556 5999999999877765543 346888899986532 123578
Q ss_pred cEEEecccCc
Q 023974 179 DVVFLYFLPA 188 (274)
Q Consensus 179 D~V~~~f~l~ 188 (274)
|+++.+.+..
T Consensus 84 d~li~~Ag~~ 93 (247)
T 3lyl_A 84 DILVNNAGIT 93 (247)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999887654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.16 E-value=0.86 Score=39.12 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=44.6
Q ss_pred CeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCC----------CCCCcc
Q 023974 118 SKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPD----------KWGPLD 179 (274)
Q Consensus 118 ~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf----------~~~sFD 179 (274)
.+|| .|++.| .++..|++.+ .+|+++|-+++-++...+. ..++.++++|+.+... .-+.+|
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 4677 665554 3344455555 5899999998766554433 3457888888866321 114799
Q ss_pred EEEecccC
Q 023974 180 VVFLYFLP 187 (274)
Q Consensus 180 ~V~~~f~l 187 (274)
+++.+.+.
T Consensus 82 ~lv~nAg~ 89 (256)
T 1geg_A 82 VIVNNAGV 89 (256)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99988764
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.1 Score=48.14 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=42.8
Q ss_pred CeEE-EEcC-chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEecccC
Q 023974 118 SKVL-VSIS-SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLYFLP 187 (274)
Q Consensus 118 ~rVL-vGcG-TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~l 187 (274)
.+|| +||| +|..+...+... ..|+.+|.+.+-++.+++. +..++.|+.+.. ..-...|+|+....+
T Consensus 17 mkilvlGaG~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~---~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEF---ATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTT---SEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred cEEEEECCCHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhcc---CCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence 5899 9997 465544443333 4899999999888877653 445566765422 112568999876443
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=89.08 E-value=0.7 Score=41.45 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc------------HHHHHHHH----HhCCCceEEEeeccCCCC--
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS------------LFVLAGIK----EKYDTVKCWQGELIYVPD-- 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S------------~~ML~~Ar----~k~~~v~~~~gDae~LPf-- 173 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|.+ .+-++... +....+.++++|+.+...
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDG-ADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ 123 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence 456788 777665 3445555556 599999986 55554433 234567888999865321
Q ss_pred --------CCCCccEEEecccCc
Q 023974 174 --------KWGPLDVVFLYFLPA 188 (274)
Q Consensus 174 --------~~~sFD~V~~~f~l~ 188 (274)
..+..|+++.+.+..
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 114799999887653
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.19 Score=39.70 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=47.1
Q ss_pred CCeEE-EEcCchHHHHHHHHh---CCCcEEEEeCcHHHHHHHHHhCCCceEE-EeeccCCCCCCCCccEEEecccCcC-C
Q 023974 117 SSKVL-VSISSEEFVDRVVES---SPSLLLVVHDSLFVLAGIKEKYDTVKCW-QGELIYVPDKWGPLDVVFLYFLPAM-P 190 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~---~~~~V~gVD~S~~ML~~Ar~k~~~v~~~-~gDae~LPf~~~sFD~V~~~f~l~~-~ 190 (274)
+.+|+ +|||. ++..+++. ...+|+.+|.+++-.+...+++. .... ..+.++. -...|+|+.+-.... .
T Consensus 21 ~~~v~iiG~G~--iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~-~~~~~~~~~~~~---~~~~Divi~at~~~~~~ 94 (144)
T 3oj0_A 21 GNKILLVGNGM--LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE-YEYVLINDIDSL---IKNNDVIITATSSKTPI 94 (144)
T ss_dssp CCEEEEECCSH--HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT-CEEEECSCHHHH---HHTCSEEEECSCCSSCS
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC-CceEeecCHHHH---hcCCCEEEEeCCCCCcE
Confidence 78999 99864 44444332 12359999999988776555554 2221 1222211 245899987744322 2
Q ss_pred CCHHHHHHHHHHhcCCCCEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvI 212 (274)
.+ ...|+||+.++-
T Consensus 95 ~~--------~~~l~~g~~vid 108 (144)
T 3oj0_A 95 VE--------ERSLMPGKLFID 108 (144)
T ss_dssp BC--------GGGCCTTCEEEE
T ss_pred ee--------HHHcCCCCEEEE
Confidence 11 145788777654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.00 E-value=0.56 Score=40.48 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=49.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccCCCC----------C
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIYVPD----------K 174 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~LPf----------~ 174 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|-+++-++.+.+.. .++.++++|+.+... .
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 356788 777665 3455566666 49999999998877665432 567888999876321 1
Q ss_pred CCCccEEEecccC
Q 023974 175 WGPLDVVFLYFLP 187 (274)
Q Consensus 175 ~~sFD~V~~~f~l 187 (274)
.+..|+++.+.+.
T Consensus 85 ~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 85 YGAVDILVNAAAM 97 (250)
T ss_dssp HCCEEEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 1479999988765
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=88.99 E-value=1 Score=39.53 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=48.9
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCCC----------CCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVPD----------KWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LPf----------~~~sFD~ 180 (274)
.+.+|| .|++.| .++..|++.+ .+|+.+|-+.+-++.+.+.. .++.++++|+.+... .-+..|+
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 105 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV 105 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 455777 666554 3344555555 58999999998887776654 468888999866321 1147999
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
++.+.+..
T Consensus 106 lVnnAg~~ 113 (272)
T 4dyv_A 106 LFNNAGTG 113 (272)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99887753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.6 Score=34.49 Aligned_cols=68 Identities=18% Similarity=0.051 Sum_probs=43.3
Q ss_pred CCeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC---CCCCCccEEEeccc
Q 023974 117 SSKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP---DKWGPLDVVFLYFL 186 (274)
Q Consensus 117 ~~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP---f~~~sFD~V~~~f~ 186 (274)
+.+|+ +|+|. |.. +..|.+.+..+|+++|.+++-++.++ ..++.+..+|..+.. ..-..+|+|+.+..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--RMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--TTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--hCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 45899 99853 322 33344444258999999998777665 345677777765421 11246899997754
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=88.90 E-value=1.1 Score=37.89 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=45.5
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC----------CCCCc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD----------KWGPL 178 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf----------~~~sF 178 (274)
.+.+|| .|++.| .++..|++.+ .+|+++|-+++-++...+.. .++.++++|+.+... ..+.+
T Consensus 5 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (251)
T 1zk4_A 5 DGKVAIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV 83 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 345778 665443 2334444455 58999999988776655443 467888999865320 01369
Q ss_pred cEEEecccC
Q 023974 179 DVVFLYFLP 187 (274)
Q Consensus 179 D~V~~~f~l 187 (274)
|+|+.+.+.
T Consensus 84 d~li~~Ag~ 92 (251)
T 1zk4_A 84 STLVNNAGI 92 (251)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 999988664
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.69 Score=40.43 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=58.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEe-CcHHHHHHHHH----hCCCceEEEeeccCCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVH-DSLFVLAGIKE----KYDTVKCWQGELIYVPD----------KWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD-~S~~ML~~Ar~----k~~~v~~~~gDae~LPf----------~~~ 176 (274)
.+.+|| .|++.| .++..|++.+ .+|+.++ -+.+-++...+ ...++.++++|+.+... ..+
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G-~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDG-FTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHT-CEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 466888 777665 3455566666 4787774 34444443332 23467888888866331 114
Q ss_pred CccEEEecccCcCCC-----CHH--------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPF-----PLD--------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~-----d~~--------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+..... +.+ ..++.+.+.++++|+++..
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 799999887654321 111 2345666777889998874
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=88.82 E-value=1.8 Score=38.86 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=58.0
Q ss_pred CCeEE-EEcCchHHHHHHHHhC--CCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 117 SSKVL-VSISSEEFVDRVVESS--PSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~--~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
..+|+ +|+ |.++..+++.- .+.|+++|.+++.++ +++ .++.++.||+.+.. ..-+..|+|++... .
T Consensus 115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~--~ 187 (336)
T 1lnq_A 115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLE--S 187 (336)
T ss_dssp -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--TTCEEEESCTTSHHHHHHTCSTTEEEEEECCS--S
T ss_pred cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--CCcEEEEeCCCCHHHHHhcChhhccEEEEcCC--c
Confidence 45788 876 55666665531 122999999999988 665 56889999987632 22367898887532 1
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++..-.....+|-+.|..+++.-
T Consensus 188 -d~~n~~~~~~ar~~~~~~~iiar 210 (336)
T 1lnq_A 188 -DSETIHCILGIRKIDESVRIIAE 210 (336)
T ss_dssp -HHHHHHHHHHHHTTCTTSEEEEE
T ss_pred -cHHHHHHHHHHHHHCCCCeEEEE
Confidence 11223344667888888888764
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=0.95 Score=38.93 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=46.0
Q ss_pred CCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCC----------CCCC
Q 023974 117 SSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPD----------KWGP 177 (274)
Q Consensus 117 ~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf----------~~~s 177 (274)
+.+|| .|++.| .++..|++++ .+|+++|-+++-++.+.+. ..++.++++|+.+... .-+.
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 85 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEG-AHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG 85 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46788 666554 3344455555 5899999998766654432 3467888899865321 0137
Q ss_pred ccEEEecccCc
Q 023974 178 LDVVFLYFLPA 188 (274)
Q Consensus 178 FD~V~~~f~l~ 188 (274)
.|+++.+.+..
T Consensus 86 id~lv~~Ag~~ 96 (263)
T 3ai3_A 86 ADILVNNAGTG 96 (263)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999887643
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=88.76 E-value=0.6 Score=44.03 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=37.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHH-HhC-C-CcEEEEeCcHHHHHHHHHh
Q 023974 113 EIDESSKVL-VSISSEEFVDRVV-ESS-P-SLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~-~~~-~-~~V~gVD~S~~ML~~Ar~k 157 (274)
.+.++..|+ ||++.|..+..++ +.. + ++|+++++.+...+..+++
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n 271 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV 271 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 357889999 9999999998877 444 3 7999999999999888764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.76 E-value=1.9 Score=41.31 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=55.9
Q ss_pred CeEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------------------Cc-eEEEeeccCCCCCC
Q 023974 118 SKVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------------------TV-KCWQGELIYVPDKW 175 (274)
Q Consensus 118 ~rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------------------~v-~~~~gDae~LPf~~ 175 (274)
.+|. ||+|+ |. ++..++..+ ..|+++|.+++-++.+++... .. .-+..|.+. -
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~----~ 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVG-ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE----L 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGG----G
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHH----H
Confidence 4788 99998 43 455555555 489999999998887765210 11 112333322 2
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
...|+|+.+. +....-.+.+++++...++||..|+.
T Consensus 113 ~~aDlVIeaV-pe~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 STVDLVVEAV-FEDMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp TTCSEEEECC-CSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCEEEEcC-CCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 4579999764 22211136788999999988766544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=88.72 E-value=1.4 Score=40.93 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=56.8
Q ss_pred CCeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 117 SSKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 117 ~~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
..+|- ||+|. | .++..|++.+ ..|++.|.+++-++.+.+. ++.. ..+.+++-......|+|++..... ..
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G-~~V~v~dr~~~~~~~l~~~--g~~~-~~s~~e~~~~a~~~DvVi~~vp~~---~v 94 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGG-HECVVYDLNVNAVQALERE--GIAG-ARSIEEFCAKLVKPRVVWLMVPAA---VV 94 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHTT--TCBC-CSSHHHHHHHSCSSCEEEECSCGG---GH
T ss_pred CCEEEEECchHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHC--CCEE-eCCHHHHHhcCCCCCEEEEeCCHH---HH
Confidence 35788 99886 3 3455565556 4899999999988877654 2211 122222211123459998764332 56
Q ss_pred HHHHHHHHHhcCCCCEEEE
Q 023974 194 DQVFETLANRCSPGARVVI 212 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvI 212 (274)
++++.++...|+||..++-
T Consensus 95 ~~vl~~l~~~l~~g~iiId 113 (358)
T 4e21_A 95 DSMLQRMTPLLAANDIVID 113 (358)
T ss_dssp HHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 7888999999998766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 274 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.95 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.94 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.93 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.93 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.91 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.9 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.89 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.89 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.89 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.88 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.88 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.87 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.86 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.86 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.84 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.82 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.82 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.82 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.81 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.8 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.8 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.79 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.77 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.77 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.77 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.76 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.76 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.75 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.75 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.73 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.7 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.69 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.68 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.66 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.62 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.62 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.56 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.53 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.51 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.51 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.51 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.5 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.45 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.44 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.3 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.3 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.28 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.28 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.28 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.27 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.17 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.13 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.09 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.08 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.02 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.99 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.98 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.94 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.89 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.84 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.82 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.81 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.8 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.79 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.67 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.61 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.6 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.59 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.55 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.55 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.54 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.54 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.53 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.52 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.47 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.44 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.43 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.4 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.35 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.31 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.26 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.14 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.11 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.1 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.08 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.08 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.07 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 98.05 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.97 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.93 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.85 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.85 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.8 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.79 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.67 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.51 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.5 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.44 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.24 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.23 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.12 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.08 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.07 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.02 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.98 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.95 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.68 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.62 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.09 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.93 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.91 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.81 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.42 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.23 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.18 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.9 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 94.49 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.44 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.13 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.33 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.31 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.15 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.97 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 92.89 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 91.85 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.83 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.2 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.19 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.12 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.73 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.64 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.83 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 89.64 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.15 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.74 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 88.74 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.1 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 87.84 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.54 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 87.16 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 86.76 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.08 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 85.98 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 85.97 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 85.68 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.24 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.52 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 84.32 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 84.22 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.51 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.37 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 83.19 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.08 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 83.08 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.08 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.76 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.69 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 82.48 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 82.22 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.8 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.79 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.65 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.43 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 80.32 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 80.1 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=1.7e-28 Score=210.78 Aligned_cols=153 Identities=9% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCc
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sF 178 (274)
+.++++.++++++++|| ||||||.++..+++.+. +|+|||+|++|++.|+++ +++++|+++|++++|+++++|
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 46788889999999999 99999999999998874 999999999999999876 467999999999999999999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHHHHhhC---cccccccCCCHHHHHHHHHhCCCcE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQKQRKQF---PDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~~~~~~---~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
|+|+|..+++|+.|+++++++++|+|||||+++|.++. ....+..+...+ .......+.+.+++.++++++||++
T Consensus 83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 162 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 162 (231)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence 99999999999999999999999999999999995422 122333332221 1112345678899999999999987
Q ss_pred eEEEe
Q 023974 254 DNFVD 258 (274)
Q Consensus 254 v~~~d 258 (274)
+..+.
T Consensus 163 ~~~~~ 167 (231)
T d1vl5a_ 163 EELHC 167 (231)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.95 E-value=4.7e-27 Score=204.05 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=124.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~s 177 (274)
...-+++.+.+++|+||| ||||||.++..|++++ .+|+|||+|++||+.|+++ .+++.++++|++++|+++++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 445577889999999999 9999999999999887 4999999999999999876 46799999999999999999
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHHHHhhC---cccccccCCCHHHHHHHHHhCCCc
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ--GREALQKQRKQF---PDVIVSDLPDQMTLQKAAGNHCFQ 252 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~~~~~~---~~~si~~fps~~eL~~ll~~aGF~ 252 (274)
||+|+|..+++|++|++++++++.|+|||||++++.+.. ....+.++...+ .........+.+++..+++++||.
T Consensus 83 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~ 162 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLA 162 (234)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEE
T ss_pred cceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999996322 122333332211 111223445789999999999997
Q ss_pred EeEE
Q 023974 253 IDNF 256 (274)
Q Consensus 253 ~v~~ 256 (274)
+...
T Consensus 163 ~~~~ 166 (234)
T d1xxla_ 163 YQDI 166 (234)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 6544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=9.6e-27 Score=197.77 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=114.0
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCH
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPL 193 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~ 193 (274)
.++++|| ||||||.++..+ .+++|||+|++|++.|+++ +++++++|++++|+.+++||+|++..++++++|+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc--cccccccccccccccccccccccccccccccccc
Confidence 4567999 999999998887 3679999999999999986 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC-c---ccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 194 DQVFETLANRCSPGARVVISHPQGREALQKQRKQF-P---DVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 194 ~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~-~---~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
++++++++|+|||||+++|..+.....+....... . ......+++.+++.++++++||+++.+..
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 99999999999999999998765443333332211 1 11234588999999999999998876554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.93 E-value=1.5e-25 Score=200.12 Aligned_cols=151 Identities=12% Similarity=0.077 Sum_probs=124.4
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCCc
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~sF 178 (274)
..+.+...+.++++|| ||||||.++..|+++...+|+|||+|+.|++.|+++. ++++++++|++++|+++++|
T Consensus 57 ~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sf 136 (282)
T d2o57a1 57 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSY 136 (282)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccccccc
Confidence 4455566899999999 9999999999998864359999999999999999863 46899999999999999999
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC-----ChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ-----GREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~-----gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
|+|++..++++++|+.+++++++|+|||||+|+|.++. ....+...... .....+++.+++.++++++||+.
T Consensus 137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~l~~~Gf~~ 213 (282)
T d2o57a1 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDR---IKLHDMGSLGLYRSLAKECGLVT 213 (282)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHH---HTCSSCCCHHHHHHHHHHTTEEE
T ss_pred chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHH---hccCCCCCHHHHHHHHHHcCCce
Confidence 99999999999999999999999999999999996432 11122222211 12345788999999999999998
Q ss_pred eEEEec
Q 023974 254 DNFVDE 259 (274)
Q Consensus 254 v~~~d~ 259 (274)
+...+.
T Consensus 214 i~~~d~ 219 (282)
T d2o57a1 214 LRTFSR 219 (282)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.3e-25 Score=194.84 Aligned_cols=154 Identities=15% Similarity=0.056 Sum_probs=126.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----C-CCceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----Y-DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~-~~v~~~~gDae~LPf~~~ 176 (274)
.++.+.+.+++.+|++|| ||||||.++..++++.+.+|+|||+|+.|++.|+++ . ++++|+++|+++++ .++
T Consensus 21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-~~~ 99 (245)
T d1nkva_ 21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANE 99 (245)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSS
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-ccC
Confidence 577788899999999999 999999999999887557999999999999999886 2 24899999999984 689
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCCh--hHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEe
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGR--EALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQID 254 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr--~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v 254 (274)
+||+|++...++++.|+++++++++|+|||||+++|..+..+ .........+.......+.+..++...++++||+++
T Consensus 100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVV 179 (245)
T ss_dssp CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCC
T ss_pred ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999999999754211 112233334433344567889999999999999877
Q ss_pred EEEe
Q 023974 255 NFVD 258 (274)
Q Consensus 255 ~~~d 258 (274)
....
T Consensus 180 ~~~~ 183 (245)
T d1nkva_ 180 EMVL 183 (245)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.2e-24 Score=187.77 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=115.2
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-----CceEEEeeccCCCCCCCCccEEEeccc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-----TVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-----~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
...++.+|| ||||||.++..++..+..+|+|||+|++||+.||++.+ +++|.++|++++++.+++||+|++.++
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 456778999 99999999998876655689999999999999998854 468999999999999999999999999
Q ss_pred CcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCC
Q 023974 187 PAMPFPLD--QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 187 l~~~~d~~--~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
++++++++ +++++++|+|||||+++|.+...... ..+.........+.+++.++++++||+++..+....
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~~ 208 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-----VILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 208 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-----EEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccc-----cccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeCC
Confidence 99987664 89999999999999999974321110 001111112235789999999999999998877544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=2.1e-24 Score=187.18 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=105.8
Q ss_pred ccccccccccccccCCc-cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh
Q 023974 80 FEDFTEIDWSFLDSDEL-NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 80 f~~~~~~~Wd~~~~~~~-~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k 157 (274)
|.+..++.||.+..... .-.....++..+++.....++.+|| ||||||.++..|++.+. +|+|||+|++||+.|+++
T Consensus 4 ~~~~~a~~Yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~ 82 (251)
T d1wzna1 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRK 82 (251)
T ss_dssp GGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccc
Confidence 34445666777543211 1113344677888888888889999 99999999999998874 999999999999999987
Q ss_pred C----CCceEEEeeccCCCCCCCCccEEEecc-cCcCC--CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 158 Y----DTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMP--FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 158 ~----~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~--~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
. .++++.++|++++|++ ++||+|+|.+ ++++. .++.++|++++|+|||||+++|..
T Consensus 83 ~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 83 AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 3689999999999986 6899999874 45554 466799999999999999999853
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.89 E-value=3.1e-23 Score=184.29 Aligned_cols=158 Identities=8% Similarity=0.024 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccCCCCCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIYVPDKW 175 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~LPf~~ 175 (274)
.+.++.+..++.+...++.+|| +|||||.++..|+.++...|+|||+|+.||+.||++.. .++|.++|++++++++
T Consensus 77 ~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~ 156 (254)
T d1xtpa_ 77 VDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS
T ss_pred hhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCC
Confidence 4556778889988888889999 99999999998877644589999999999999999864 4789999999999999
Q ss_pred CCccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 176 GPLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
++||+|++..+++|+.|++ ++|+++.++|||||+|+|.+...... ...+......-..+.+++.++++++||++
T Consensus 157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~----~~~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----RFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C----CEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCC----cceecccCCceeCCHHHHHHHHHHcCCEE
Confidence 9999999999999997765 88999999999999999975432110 00000000111347899999999999999
Q ss_pred eEEEecCC
Q 023974 254 DNFVDESG 261 (274)
Q Consensus 254 v~~~d~~~ 261 (274)
+..+...+
T Consensus 233 i~~~~q~~ 240 (254)
T d1xtpa_ 233 VKEAFQEE 240 (254)
T ss_dssp EEEEECTT
T ss_pred EEEEeeCC
Confidence 88766444
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.89 E-value=3.9e-23 Score=180.05 Aligned_cols=180 Identities=10% Similarity=0.026 Sum_probs=124.3
Q ss_pred cccccccccCCccchhHHHHHHH---HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC--
Q 023974 85 EIDWSFLDSDELNFKEHIQRIDQ---IISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-- 158 (274)
Q Consensus 85 ~~~Wd~~~~~~~~~~~~~~w~~~---ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-- 158 (274)
+..||.+...... ...|... .+...++ ++.+|| ||||||.++..|++++. +|+|||+|++||+.|+++.
T Consensus 7 A~~YD~l~~~~~~---y~~~~~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~ 81 (246)
T d1y8ca_ 7 AHIYDKLIRADVD---YKKWSDFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRS 81 (246)
T ss_dssp HHHHHHHTTCSCC---HHHHHHHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCC---HHHHHHHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccc
Confidence 4447755443211 2234444 3444333 457999 99999999999999885 9999999999999999873
Q ss_pred --CCceEEEeeccCCCCCCCCccEEEecc-cCcCC---CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC----
Q 023974 159 --DTVKCWQGELIYVPDKWGPLDVVFLYF-LPAMP---FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF---- 228 (274)
Q Consensus 159 --~~v~~~~gDae~LPf~~~sFD~V~~~f-~l~~~---~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~---- 228 (274)
.+++++++|+.++++ +++||+|+|.+ +++++ .++.++|+++++.|||||+|++.-. ....+.......
T Consensus 82 ~~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~-~~~~~~~~~~~~~~~~ 159 (246)
T d1y8ca_ 82 QGLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN-SYYKLSQVLGNNDFNY 159 (246)
T ss_dssp TTCCCEEECCCGGGCCC-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE-CHHHHHTTTTTCCEEE
T ss_pred cCccceeeccchhhhcc-cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC-CHHHHhhhcccCceee
Confidence 368999999999986 57999999863 34443 4667899999999999999997411 111111110000
Q ss_pred -----------------------------------cccccccCCCHHHHHHHHHhCCCcEeEEEe---------cCCeEE
Q 023974 229 -----------------------------------PDVIVSDLPDQMTLQKAAGNHCFQIDNFVD---------ESGFYL 264 (274)
Q Consensus 229 -----------------------------------~~~si~~fps~~eL~~ll~~aGF~~v~~~d---------~~~~yl 264 (274)
...+.....+.+++.++++++||+.+...+ +....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~ 239 (246)
T d1y8ca_ 160 DDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERIT 239 (246)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEE
T ss_pred cCCcEEEEEeeccCCcceeEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEE
Confidence 000122345789999999999998776443 345678
Q ss_pred EEEEecC
Q 023974 265 VVLKFSK 271 (274)
Q Consensus 265 ~v~~~~~ 271 (274)
.|+||.+
T Consensus 240 ~v~kk~~ 246 (246)
T d1y8ca_ 240 YLVKLGG 246 (246)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 8888864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=1.5e-23 Score=179.80 Aligned_cols=132 Identities=12% Similarity=0.087 Sum_probs=104.3
Q ss_pred cccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh
Q 023974 79 NFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK 157 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k 157 (274)
-|++ .++.||........ .....++.+++... +.++.+|| +|||||.++..|++.+ .+|+|||+|++|++.|+++
T Consensus 8 ~yd~-~a~~Yd~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~l~~a~~~ 83 (246)
T d2avna1 8 FYDR-IARAYDSMYETPKW-KLYHRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREK 83 (246)
T ss_dssp HHHH-HHHHHGGGGCSHHH-HHHHHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhccccc-hHHHHHHHHHHHHh-cCCCCEEEEECCCCchhcccccccc-eEEEEeecccccccccccc
Confidence 3444 45568765443222 12233444555443 44677999 9999999999998876 5999999999999999998
Q ss_pred CCCceEEEeeccCCCCCCCCccEEEec-ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 158 YDTVKCWQGELIYVPDKWGPLDVVFLY-FLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 158 ~~~v~~~~gDae~LPf~~~sFD~V~~~-f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
... .++++|+++||+++++||+|++. .+++|++|++++|++++|+|||||.++|+.+
T Consensus 84 ~~~-~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 84 GVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp TCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-ccccccccccccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 653 46799999999999999999986 5788999999999999999999999999754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.88 E-value=1.5e-22 Score=174.65 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=123.0
Q ss_pred cccccccccccccc-CCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC--C-CcEEEEeCcHHHHHHH
Q 023974 80 FEDFTEIDWSFLDS-DELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS--P-SLLLVVHDSLFVLAGI 154 (274)
Q Consensus 80 f~~~~~~~Wd~~~~-~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~--~-~~V~gVD~S~~ML~~A 154 (274)
|++..+..||.+.. ..+...+..+-+..++.. .++++++|| ||||||.++..|++.. + .+|+|||+|++||+.|
T Consensus 3 ~~~~~a~~fdd~i~~~iP~Y~~~~~~i~~~~~~-~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A 81 (225)
T d1im8a_ 3 FDENVAEVFPDMIQRSVPGYSNIITAIGMLAER-FVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 81 (225)
T ss_dssp CCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-HCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHH
Confidence 66666666664221 112221211122233322 257888999 9999999999998752 4 7999999999999999
Q ss_pred HHhC---C---CceEEEeeccCCCCCCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCC---ChhH---
Q 023974 155 KEKY---D---TVKCWQGELIYVPDKWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQ---GREA--- 220 (274)
Q Consensus 155 r~k~---~---~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~---gr~~--- 220 (274)
+++. + .+.+..+|+.++| .+.+|+|+++++++++ .|+.++|++++|+|||||.+++.+.. .+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~ 159 (225)
T d1im8a_ 82 RQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL 159 (225)
T ss_dssp HHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH
T ss_pred HHHhHhhcccchhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH
Confidence 9873 1 3566778876665 4788999999888886 47889999999999999999997532 1111
Q ss_pred HHHHHhh------Ccc----------cccccCCCHHHHHHHHHhCCCcEeEEE-ecCCeEEEEEEe
Q 023974 221 LQKQRKQ------FPD----------VIVSDLPDQMTLQKAAGNHCFQIDNFV-DESGFYLVVLKF 269 (274)
Q Consensus 221 l~~~~~~------~~~----------~si~~fps~~eL~~ll~~aGF~~v~~~-d~~~~yl~v~~~ 269 (274)
+...+.. +.. .++....+.+++.++++++||+.+... ..-.|.-.|.+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 160 LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 1111111 100 023345689999999999999876642 222344444443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.88 E-value=2.2e-22 Score=174.07 Aligned_cols=149 Identities=10% Similarity=0.043 Sum_probs=116.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V 181 (274)
.++.+.+. .++.+|| ||||||.++..+++.+. +|+|||+|++|++.|+++.+ ++.++++|++++++ +++||+|
T Consensus 11 ~~~~~~~~---~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I 85 (225)
T d2p7ia1 11 MVRAFTPF---FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNI 85 (225)
T ss_dssp HHHHHGGG---CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEE
T ss_pred HHHHhhhh---CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccc
Confidence 44454443 3466899 99999999999988774 89999999999999999865 58999999999986 6899999
Q ss_pred EecccCcCCCCHHHHHHHHH-HhcCCCCEEEEEcCCChhHHHHHHhh--C----cc-------cccccCCCHHHHHHHHH
Q 023974 182 FLYFLPAMPFPLDQVFETLA-NRCSPGARVVISHPQGREALQKQRKQ--F----PD-------VIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~-RvLKPGGrlvIs~~~gr~~l~~~~~~--~----~~-------~si~~fps~~eL~~ll~ 247 (274)
++..+++|+.|+.++++++. |+|||||+++|+.|............ . .. ..-....+.++++++++
T Consensus 86 ~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~ 165 (225)
T d2p7ia1 86 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS 165 (225)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred cccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHH
Confidence 99999999999999999998 89999999999755432222221111 0 00 01123458999999999
Q ss_pred hCCCcEeEEE
Q 023974 248 NHCFQIDNFV 257 (274)
Q Consensus 248 ~aGF~~v~~~ 257 (274)
++||+++...
T Consensus 166 ~~Gf~i~~~~ 175 (225)
T d2p7ia1 166 RAGLQVTYRS 175 (225)
T ss_dssp HTTCEEEEEE
T ss_pred HCCCEEEEEE
Confidence 9999987643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=5.1e-23 Score=174.37 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=94.0
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccE
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~ 180 (274)
..++.. .++++++|| ||||||.++..+++.+ .+|+|+|+|++|++.|+++. ..+.++++|++++|+.+++||+
T Consensus 28 ~~~~~~-~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~ 105 (226)
T d1ve3a1 28 EPLLMK-YMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDY 105 (226)
T ss_dssp HHHHHH-SCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEE
T ss_pred HHHHHH-hcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhccccccccccccccccccccCcCceE
Confidence 334433 356888999 9999999999998876 49999999999999999763 4578999999999999999999
Q ss_pred EEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 181 VFLYFLPAMPF--PLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
|++..+++|++ |+.+++++++|+|||||+++|..+
T Consensus 106 I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 106 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 99999999986 677899999999999999999643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.88 E-value=2.7e-23 Score=182.74 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=118.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCC-CC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPD-KW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf-~~ 175 (274)
|+++++=..-++++.+|| ||||||..+..+++.+.+.|+|||+|++||+.|++|+. ++.|.++|+...++ .+
T Consensus 12 ~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~ 91 (252)
T d1ri5a_ 12 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 91 (252)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred HHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc
Confidence 676554233467889999 99999999888888766789999999999999998742 47899999988876 47
Q ss_pred CCccEEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC-c---------------------
Q 023974 176 GPLDVVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF-P--------------------- 229 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~-~--------------------- 229 (274)
++||+|+|.+++|+.. +.+.+++++.|+|||||+|+++.+.+........... .
T Consensus 92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (252)
T d1ri5a_ 92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVRE 171 (252)
T ss_dssp SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCE
T ss_pred ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceE
Confidence 7999999999998864 3457999999999999999997655433333222110 0
Q ss_pred ------c---cccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 230 ------D---VIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 230 ------~---~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+ .....+.+.+.+.++++++||+.+....
T Consensus 172 y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~ 209 (252)
T d1ri5a_ 172 YRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKG 209 (252)
T ss_dssp EEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred EEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEec
Confidence 0 0112356789999999999999887654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=8.8e-22 Score=175.73 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=91.0
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEeccc
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFL 186 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~ 186 (274)
+......++.+|| ||||||.++..|++..+ ..++|||+|+.||+.|+++.+++.|++||++++|+++++||+|++.++
T Consensus 77 l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 156 (268)
T d1p91a_ 77 LRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 156 (268)
T ss_dssp HHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred HHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC
Confidence 3333455677999 99999999999999877 799999999999999999999999999999999999999999999888
Q ss_pred CcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 187 PAMPFPLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 187 l~~~~d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
+++ ++|++|+|||||+|++..|..
T Consensus 157 ~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 157 PCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred HHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 866 578999999999999987643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.86 E-value=1.3e-21 Score=175.61 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=114.9
Q ss_pred HHHHhC-CCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCc
Q 023974 107 QIISAG-EIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPL 178 (274)
Q Consensus 107 ~ll~~~-~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sF 178 (274)
.+++.+ .+.++.+|| ||||||.++..|++..+ .+|+|||+|+.||+.|+++.. +++|.++|++++|+. ++|
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~f 95 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKY 95 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCc
Confidence 344433 567778999 99999999999988643 689999999999999998743 578999999999985 579
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH----------------HHHHHhhCcc---cccccCCCH
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA----------------LQKQRKQFPD---VIVSDLPDQ 239 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~----------------l~~~~~~~~~---~si~~fps~ 239 (274)
|+|++..++++++|+.+++++++|+|||||+++|.++..... +..+...+.. .......-.
T Consensus 96 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 175 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG 175 (281)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGG
T ss_pred eEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999976531100 0011111100 001111113
Q ss_pred HHHHHHHHhCCCcEeEEEecCC
Q 023974 240 MTLQKAAGNHCFQIDNFVDESG 261 (274)
Q Consensus 240 ~eL~~ll~~aGF~~v~~~d~~~ 261 (274)
.++..+|+++||+++..+..+.
T Consensus 176 ~~l~~~l~eaGf~~i~~~~~~~ 197 (281)
T d2gh1a1 176 MKIPIYLSELGVKNIECRVSDK 197 (281)
T ss_dssp GTHHHHHHHTTCEEEEEEECCC
T ss_pred HHHHHHHHHcCCeEEEEEEecc
Confidence 5788899999999887766543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=1.5e-21 Score=172.11 Aligned_cols=177 Identities=12% Similarity=0.046 Sum_probs=135.2
Q ss_pred cccccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHH
Q 023974 75 VSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLA 152 (274)
Q Consensus 75 ~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~ 152 (274)
+....+.+...|.||..-+-+ - ..+.+.++.+.++||++|| ||||||..+..+++.++ +.|+|||+|+.|++
T Consensus 39 e~~~~~~~~e~r~w~p~rskl-----a-A~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~ 112 (230)
T d1g8sa_ 39 EKIIKIGDEEYRIWNPNKSKL-----A-AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR 112 (230)
T ss_dssp CCEEEETTEEEEECCTTTCHH-----H-HHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHH
T ss_pred ceeeecCCceeeeECCCccHH-----H-HHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHH
Confidence 445667778899999754421 1 1233335667899999999 99999999999999877 89999999999999
Q ss_pred HHHHh---CCCceEEEeeccCCC-CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC----hhHHHHH
Q 023974 153 GIKEK---YDTVKCWQGELIYVP-DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQG----REALQKQ 224 (274)
Q Consensus 153 ~Ar~k---~~~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g----r~~l~~~ 224 (274)
.|+++ .+++..+.+|+...+ ..+..+|++++...+++..+++.+++++.|+|||||+++|..... ......
T Consensus 113 ~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~- 191 (230)
T d1g8sa_ 113 ELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKE- 191 (230)
T ss_dssp HHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHH-
T ss_pred HHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHH-
Confidence 99986 467888899988754 567788888877777788899999999999999999999963210 000000
Q ss_pred HhhCcccccccCCCHHHHHHHHHhCCCcEeEEEec----CCeEEEEEEecC
Q 023974 225 RKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE----SGFYLVVLKFSK 271 (274)
Q Consensus 225 ~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~----~~~yl~v~~~~~ 271 (274)
..++..+.|+++||++++.++- .++++.|++-+.
T Consensus 192 -------------~~~e~~~~L~~aGF~ive~idL~py~~~H~~vvg~y~~ 229 (230)
T d1g8sa_ 192 -------------IFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG 229 (230)
T ss_dssp -------------HHHHHHHHHHHHTEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred -------------HHHHHHHHHHHcCCEEEEEecCCCCcCCeEEEEEEecC
Confidence 1356778899999999998874 457888877543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.7e-22 Score=173.40 Aligned_cols=154 Identities=9% Similarity=0.005 Sum_probs=110.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC--ce---------------------------
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT--VK--------------------------- 162 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~--v~--------------------------- 162 (274)
+..++.+|| ||||||.++..++..+..+|+|+|+|+.||+.|+++..+ ..
T Consensus 48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 445678999 999999887777665435899999999999999986321 00
Q ss_pred ------E----EEeeccCCCCCCCCccEEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 163 ------C----WQGELIYVPDKWGPLDVVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 163 ------~----~~gDae~LPf~~~sFD~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
. +..+....|+.+++||+|++.++++++. ++..++++++|+|||||++++....+... +...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~----~~~~ 203 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS----YMVG 203 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----EEET
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccc----ceec
Confidence 0 1123334577889999999999988763 66789999999999999999976543211 0011
Q ss_pred cccccccCCCHHHHHHHHHhCCCcEeEEEe-----------cCCeEEEEEEec
Q 023974 229 PDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-----------ESGFYLVVLKFS 270 (274)
Q Consensus 229 ~~~si~~fps~~eL~~ll~~aGF~~v~~~d-----------~~~~yl~v~~~~ 270 (274)
.......+.+.+++.++++++||+++.... ..+.+++|.||.
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 204 KREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred cccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 112234466899999999999999877642 344567777764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.83 E-value=7.3e-21 Score=156.81 Aligned_cols=109 Identities=8% Similarity=0.031 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----------------CCceEEE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----------------DTVKCWQ 165 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----------------~~v~~~~ 165 (274)
+++..+..+.+.+++||| +|||||..+..|+++| .+|+|||+|+.||++|+++. ....|++
T Consensus 8 ~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 455677888999999999 9999999999999988 49999999999999999874 2357899
Q ss_pred eeccCCCC-CCCCccEEEecccCcCCC--CHHHHHHHHHHhcCCCCEEEEE
Q 023974 166 GELIYVPD-KWGPLDVVFLYFLPAMPF--PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 166 gDae~LPf-~~~sFD~V~~~f~l~~~~--d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+.+++. ...+||+|++...++++. +...++++++++|||||++++.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEE
Confidence 99999874 457999999998887765 4578999999999999998874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=2.3e-20 Score=158.05 Aligned_cols=143 Identities=8% Similarity=0.060 Sum_probs=104.8
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.++..+....+.||| ||||||..+..+++++. +|+|||+|+.||+.|+++ .+++.+..+|++++++ +++||+
T Consensus 21 ~~~~~~~~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~ 98 (198)
T d2i6ga1 21 DVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDF 98 (198)
T ss_dssp HHHHHHTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEE
T ss_pred HHHHHcccCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccE
Confidence 344445444456999 99999999999999885 999999999999998865 3568899999999986 689999
Q ss_pred EEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 181 VFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 181 V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
|++..+++++++ ..+++++++++|||||++++.......... ... ......+..++.+.+ .||+++.+.+
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~---~~~---~~~~~~~~~el~~~~--~~~~i~~~~e 170 (198)
T d2i6ga1 99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP---CTV---GFPFAFKEGELRRYY--EGWDMLKYNE 170 (198)
T ss_dssp EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC---CCC---CCCCccCHHHHHHHh--CCCeEEEeee
Confidence 999998888754 447999999999999999996433211100 000 111223456787776 4788776654
Q ss_pred c
Q 023974 259 E 259 (274)
Q Consensus 259 ~ 259 (274)
.
T Consensus 171 ~ 171 (198)
T d2i6ga1 171 D 171 (198)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=3.6e-20 Score=167.29 Aligned_cols=154 Identities=10% Similarity=0.023 Sum_probs=117.6
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDK 174 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~ 174 (274)
..+++.+++.+++++|++|| ||||+|.++.++++..+.+|+|||+|++|++.|+++. ..+.+...|..++
T Consensus 38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 34788999999999999999 9999999999988774479999999999999999873 2356667776655
Q ss_pred CCCccEEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCCChhHH-----------------HHHHhhCccccccc
Q 023974 175 WGPLDVVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQGREAL-----------------QKQRKQFPDVIVSD 235 (274)
Q Consensus 175 ~~sFD~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~gr~~l-----------------~~~~~~~~~~si~~ 235 (274)
+++||.|++.-.+.++.+ .+..|++++|+|||||+++|.+....... .-+.++.. -...
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyif--Pgg~ 192 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIF--PGGR 192 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTS--TTCC
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhcc--CCCc
Confidence 478999998877777654 47999999999999999998532111100 00111110 1135
Q ss_pred CCCHHHHHHHHHhCCCcEeEEEecC
Q 023974 236 LPDQMTLQKAAGNHCFQIDNFVDES 260 (274)
Q Consensus 236 fps~~eL~~ll~~aGF~~v~~~d~~ 260 (274)
+|+.+++.+.++++||++....+-.
T Consensus 193 lPS~~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 193 LPSTEMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp CCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred ccchHhhhhhHHhhccccceeeecc
Confidence 8999999999999999988776643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.9e-20 Score=164.83 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=109.1
Q ss_pred CCCCeEE-EEcCchHHHHHHHHh----CC---CcEEEEeCcHHHHHHHHHhCC------Cc--eEEEeeccC------CC
Q 023974 115 DESSKVL-VSISSEEFVDRVVES----SP---SLLLVVHDSLFVLAGIKEKYD------TV--KCWQGELIY------VP 172 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~----~~---~~V~gVD~S~~ML~~Ar~k~~------~v--~~~~gDae~------LP 172 (274)
++..+|| ||||||.++..+++. .+ .+++|||+|++|++.|+++.. ++ .+.++++++ .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 3444899 999999987766542 22 468999999999999998743 22 344555543 36
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh-C---cccccccCCCHHHHHHHHHh
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ-F---PDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~-~---~~~si~~fps~~eL~~ll~~ 248 (274)
+.+++||+|++..+++|++|+.+++++++++|||||.++|..+.+...+..++.. + .......+.+.+++.+++++
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 198 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 198 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHH
T ss_pred CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999755444444444322 2 22234557889999999999
Q ss_pred CCCcEeEEEec
Q 023974 249 HCFQIDNFVDE 259 (274)
Q Consensus 249 aGF~~v~~~d~ 259 (274)
.||+...+...
T Consensus 199 ~G~~~~~~~~~ 209 (280)
T d1jqea_ 199 LGLKYECYDLL 209 (280)
T ss_dssp HTCCEEEEEEC
T ss_pred CCCceEEEecc
Confidence 99987665543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.82 E-value=1.5e-19 Score=159.22 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=115.0
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
.+.+++...+.+..+|| ||||||.++..++++.| .+++++|+ ++|++.|+++. .+++++.+|+.+. ...
T Consensus 69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~--~~~ 145 (253)
T d1tw3a2 69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LPR 145 (253)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSS
T ss_pred HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh--ccc
Confidence 45777788888889999 99999999999999988 89999998 67999998762 3589999998552 336
Q ss_pred CccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC------hhHHHHHHhhCcccccccCCCHHHHHHHHHh
Q 023974 177 PLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG------REALQKQRKQFPDVIVSDLPDQMTLQKAAGN 248 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g------r~~l~~~~~~~~~~si~~fps~~eL~~ll~~ 248 (274)
+||+|++...+|++.|.+ ++|++++|+|||||+|+|.+... ........-..........++.+|+.+++++
T Consensus 146 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~ 225 (253)
T d1tw3a2 146 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS 225 (253)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred chhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHH
Confidence 799999999999886654 77999999999999999965321 1111111100000112346789999999999
Q ss_pred CCCcEeEEEe
Q 023974 249 HCFQIDNFVD 258 (274)
Q Consensus 249 aGF~~v~~~d 258 (274)
+||+++..+.
T Consensus 226 AGf~~~~v~~ 235 (253)
T d1tw3a2 226 AGLVVEEVRQ 235 (253)
T ss_dssp TTEEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999887765
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=9.3e-20 Score=160.49 Aligned_cols=174 Identities=16% Similarity=0.102 Sum_probs=125.4
Q ss_pred ccccccccccccccccccccCCccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHH
Q 023974 74 TVSVVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFV 150 (274)
Q Consensus 74 ~~~~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~M 150 (274)
++....+++...|.||..-+- .-. .+-..++.+.++||++|| +|||||.++..|++. ++ ++|+|||+|+.|
T Consensus 37 ge~~~~~~~~e~R~w~p~rSK-----laa-~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~ 110 (227)
T d1g8aa_ 37 GERVIKWEGEEYRIWNPNRSK-----LGA-AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRV 110 (227)
T ss_dssp TCCEEEETTEEEEECCTTTCH-----HHH-HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHH
T ss_pred CceEEEcCCeeEEEECCCccH-----HHH-HHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHH
Confidence 345666777889999974332 111 222335667899999999 999999999999986 66 899999999999
Q ss_pred HHHHHHh---CCCceEEEeeccC---CCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH
Q 023974 151 LAGIKEK---YDTVKCWQGELIY---VPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ 224 (274)
Q Consensus 151 L~~Ar~k---~~~v~~~~gDae~---LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~ 224 (274)
++.|+++ .+++..+++|+.. ++...+.+|+|++. +.+..+.+.+++++.|+|||||+++|+... +.
T Consensus 111 l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka-~~----- 182 (227)
T d1g8aa_ 111 LRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKS-RS----- 182 (227)
T ss_dssp HHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEG-GG-----
T ss_pred HHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEEC-Cc-----
Confidence 9999876 4567788888754 44556788988875 344457889999999999999999996311 10
Q ss_pred HhhCcccccccCCCH----HHHHHHHHhCCCcEeEEEe----cCCeEEEEEEec
Q 023974 225 RKQFPDVIVSDLPDQ----MTLQKAAGNHCFQIDNFVD----ESGFYLVVLKFS 270 (274)
Q Consensus 225 ~~~~~~~si~~fps~----~eL~~ll~~aGF~~v~~~d----~~~~yl~v~~~~ 270 (274)
+.....+ .+.. .+.+.||++++..+ +.++|+.|+||+
T Consensus 183 --------~~~~~~~~~v~~~v~-~l~~~gf~iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 183 --------IDVTKEPEQVFREVE-RELSEYFEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp --------TCTTSCHHHHHHHHH-HHHHTTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred --------cCCCCCHHHHHHHHH-HHHHcCCEEEEEEcCCCCCCceEEEEEEeC
Confidence 0000111 2233 34566999988877 445799999985
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.4e-20 Score=157.93 Aligned_cols=147 Identities=7% Similarity=-0.030 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-------------------
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------------------- 159 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------------------- 159 (274)
.+...++.+.+.+.+.++.||| +|||+|..+..|+++|. +|+|||+|+.||++|+++.+
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS 107 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence 3333444455556788999999 99999999999999884 99999999999999998753
Q ss_pred ---CceEEEeeccCCC-CCCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCccccc
Q 023974 160 ---TVKCWQGELIYVP-DKWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIV 233 (274)
Q Consensus 160 ---~v~~~~gDae~LP-f~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si 233 (274)
+++++++|+.+++ ...+.||+|+....++++ .+.+..++++.|+|||||++++........ ... ..
T Consensus 108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~-----~~~---gp 179 (229)
T d2bzga1 108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPT-----KHP---GP 179 (229)
T ss_dssp TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT-----TCC---CS
T ss_pred cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCC-----CCC---CC
Confidence 4689999999985 667899999988777765 466789999999999999988854321110 000 11
Q ss_pred ccCCCHHHHHHHHHhCCCcEeEE
Q 023974 234 SDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 234 ~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
-...+.+|+.+++.. +|++...
T Consensus 180 p~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 180 PFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp SCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCHHHHHHHhcC-CCEEEEE
Confidence 124578999988865 6766443
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=4.2e-19 Score=161.47 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC------CceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD------TVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~------~v~~~~gDae~LPf 173 (274)
...+++.+++.+++++|++|| ||||.|.++.+++++.+++|+|||+|+++++.|+++.. .+.+..+|. ++
T Consensus 46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~ 122 (291)
T d1kpia_ 46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EE 122 (291)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GG
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cc
Confidence 344678899999999999999 99999999999987645799999999999999987632 255556664 66
Q ss_pred CCCCccEEEecccCcCCCC---------HHHHHHHHHHhcCCCCEEEEEcCC--ChhHHHH---------------HHhh
Q 023974 174 KWGPLDVVFLYFLPAMPFP---------LDQVFETLANRCSPGARVVISHPQ--GREALQK---------------QRKQ 227 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d---------~~~al~el~RvLKPGGrlvIs~~~--gr~~l~~---------------~~~~ 227 (274)
.+++||.|++--.+-++.+ .++.++++.|+|||||++++.... ......+ +.++
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky 202 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE 202 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence 7899999998755555544 579999999999999999984321 1111100 1111
Q ss_pred CcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeE
Q 023974 228 FPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFY 263 (274)
Q Consensus 228 ~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~y 263 (274)
.. -...+|+..++...++++||++..+.+....|
T Consensus 203 iF--pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hY 236 (291)
T d1kpia_ 203 IF--PGGRLPRISQVDYYSSNAGWKVERYHRIGANY 236 (291)
T ss_dssp TC--TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred hc--CCCCCCCHHHHHhhhcccccccceeeeccccH
Confidence 10 12468999999999999999999888866554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=4.8e-20 Score=165.03 Aligned_cols=128 Identities=17% Similarity=0.073 Sum_probs=91.7
Q ss_pred ccccccccccccC-CccchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC
Q 023974 82 DFTEIDWSFLDSD-ELNFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD 159 (274)
Q Consensus 82 ~~~~~~Wd~~~~~-~~~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~ 159 (274)
+..++.|+.+... .........|+..+++. .++.+|| ||||||.++..|++++ .+|+|||+|++||+.|+++..
T Consensus 24 ~~~~~~~~~~~~~~~~r~~~~~~~l~~~l~~---~~~~~vLD~GcG~G~~~~~la~~g-~~v~gvD~S~~ml~~A~~~~~ 99 (292)
T d1xvaa_ 24 GEAARVWQLYIGDTRSRTAEYKAWLLGLLRQ---HGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERW 99 (292)
T ss_dssp SHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH---TTCCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcchhhhHHHHHHHHHHHhhh---cCCCEEEEecCCCcHHHHHHHHcC-CeeeeccCchHHHHHHHHHHH
Confidence 3456667754332 22333455676666644 4567999 9999999999999887 489999999999999997632
Q ss_pred ----C-----ceEEEeeccC----CCCCCCCccEEEecc-cCcCCC-------CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 160 ----T-----VKCWQGELIY----VPDKWGPLDVVFLYF-LPAMPF-------PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 160 ----~-----v~~~~gDae~----LPf~~~sFD~V~~~f-~l~~~~-------d~~~al~el~RvLKPGGrlvIs~ 214 (274)
. ..+..+|... +|. .++||+|+|.+ ++.++. +...+|++++|+|||||+|+|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 100 NRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp HTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccccccceeeeeeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 1 2344454432 343 57899999763 555543 46689999999999999999964
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=6.2e-19 Score=159.88 Aligned_cols=156 Identities=14% Similarity=0.100 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
...+++.+++.+++++|++|| ||||.|.++.++++...++|+||++|+++++.|+++. ..+++..+|..++|
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 125 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 125 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-
Confidence 334678899999999999999 9999999999988864479999999999999998863 35788999988875
Q ss_pred CCCCccEEEecccCcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCC--hhH---------------HHHHHhh-Cccccc
Q 023974 174 KWGPLDVVFLYFLPAMP--FPLDQVFETLANRCSPGARVVISHPQG--REA---------------LQKQRKQ-FPDVIV 233 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~--~d~~~al~el~RvLKPGGrlvIs~~~g--r~~---------------l~~~~~~-~~~~si 233 (274)
++||.|++.-.+-++ .+.+..++++.|+|||||+++|.+... ... ..-+.++ ++ .
T Consensus 126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp---g 200 (285)
T d1kpga_ 126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP---G 200 (285)
T ss_dssp --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST---T
T ss_pred --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc---C
Confidence 689999987555555 355899999999999999999843210 000 0111222 22 2
Q ss_pred ccCCCHHHHHHHHHhCCCcEeEEEecCCe
Q 023974 234 SDLPDQMTLQKAAGNHCFQIDNFVDESGF 262 (274)
Q Consensus 234 ~~fps~~eL~~ll~~aGF~~v~~~d~~~~ 262 (274)
..+|+.+++.++++++||++..+.+....
T Consensus 201 g~lPsl~~~~~~~e~agf~v~~~~~~~~h 229 (285)
T d1kpga_ 201 GRLPSIPMVQECASANGFTVTRVQSLQPH 229 (285)
T ss_dssp CCCCCHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCChhhHHHHHHHhchhhcccccchhh
Confidence 45799999999999999999888775433
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=8.2e-19 Score=152.09 Aligned_cols=104 Identities=13% Similarity=-0.007 Sum_probs=87.5
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCCCCCCCccEEEec-
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVPDKWGPLDVVFLY- 184 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LPf~~~sFD~V~~~- 184 (274)
.+.++||++|| ||||||..+..|++..+ ++|+|||+|++|++.|+++ .+++.++.+|+...+.....+|.|.+.
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 47899999999 99999999999998766 8999999999999999865 578999999999987766666555332
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
..+.+..+.+.++++++|+|||||+++|..
T Consensus 131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 131 QDIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 235555688899999999999999999963
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=8.2e-19 Score=157.87 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=97.0
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh--------CCCceEEEeeccCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK--------YDTVKCWQGELIYVP 172 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k--------~~~v~~~~gDae~LP 172 (274)
=...++..+++.||++|| +|||||.++..|++. +| ++|+++|++++|++.|+++ ..++.+.++|+.+.+
T Consensus 84 D~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 355778889999999999 999999999999887 77 8999999999999999975 246899999999999
Q ss_pred CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 173 DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 173 f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+++++||+|++ +++||.+++.++.|+|||||++++..|.
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCc
Confidence 99999999986 3579999999999999999999997554
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.77 E-value=8e-19 Score=156.72 Aligned_cols=125 Identities=13% Similarity=0.067 Sum_probs=98.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~s 177 (274)
.++..+++.||++|| +|||||.++..|++. ++ ++|+++|.+++|++.|+++. .++++..+|+.+. +.+++
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 567788999999999 999999999999886 56 89999999999999999863 3689999999886 35789
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
||+|++. ++++.+++.++.++|||||++++..|. +++. +++.+.++++||...+.
T Consensus 155 fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P~----i~Qv---------------~~~~~~l~~~gf~~i~~ 209 (250)
T d1yb2a1 155 YDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPN----FDQS---------------EKTVLSLSASGMHHLET 209 (250)
T ss_dssp EEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESS----HHHH---------------HHHHHHSGGGTEEEEEE
T ss_pred eeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeCC----cChH---------------HHHHHHHHHCCCceeEE
Confidence 9999973 568889999999999999999996553 2222 34455667788865443
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.3e-19 Score=159.27 Aligned_cols=153 Identities=5% Similarity=-0.019 Sum_probs=106.7
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----c--------------------------
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----V-------------------------- 161 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----v-------------------------- 161 (274)
+...|.+|| ||||||.+...++.....+|+|+|+|+.|++.|+++..+ .
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 455788999 999999776555444335899999999999999975321 0
Q ss_pred -----eEEEeecc------CCCCCCCCccEEEecccCcCCC----CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHh
Q 023974 162 -----KCWQGELI------YVPDKWGPLDVVFLYFLPAMPF----PLDQVFETLANRCSPGARVVISHPQGREALQKQRK 226 (274)
Q Consensus 162 -----~~~~gDae------~LPf~~~sFD~V~~~f~l~~~~----d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~ 226 (274)
.....|+. ..+..+++||+|++.|+++++. +..+++++++|+|||||.|++....+... +.
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~----~~ 206 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW----YL 206 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE----EE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc----cc
Confidence 12334443 2445667999999999987753 57799999999999999999975432110 00
Q ss_pred hCcccccccCCCHHHHHHHHHhCCCcEeEEEe-------------cCCeEEEEEEe
Q 023974 227 QFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD-------------ESGFYLVVLKF 269 (274)
Q Consensus 227 ~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d-------------~~~~yl~v~~~ 269 (274)
...........+.+++.++++++||+++.++. .+.+++++.||
T Consensus 207 ~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK 262 (263)
T d2g72a1 207 AGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQK 262 (263)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEE
T ss_pred cCCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCcccccccccceEEEEEEEe
Confidence 00011123356899999999999999876542 12346777776
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.77 E-value=2.2e-18 Score=145.30 Aligned_cols=112 Identities=11% Similarity=0.161 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC
Q 023974 99 KEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV 171 (274)
Q Consensus 99 ~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L 171 (274)
....+.+..+++.+.+.++++|| +|||||.++..+++.+ .+|+|+|++++|++.|+++. +++++++||+.++
T Consensus 16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA 94 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence 34444667788889999999999 9999999999998766 59999999999999999862 4789999999999
Q ss_pred CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 172 PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 172 Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
++....||+|++....+ +..++++++.++|||||++++..
T Consensus 95 ~~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEe
Confidence 98899999999986543 45789999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=5.8e-19 Score=157.74 Aligned_cols=128 Identities=15% Similarity=0.163 Sum_probs=102.6
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCCCCCCCccEEEecccCc
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LPf~~~sFD~V~~~f~l~ 188 (274)
..+|++|| +|||||.++..+++.+ .+|+|||+|+.|++.|+++. -++++.++|+++. +.+++||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~-~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc-ccccccchhhhccccc
Confidence 46889999 9999999999888877 48999999999999999753 2468899998763 4568999999985443
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEE
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
.+.+.++++.|+|||||+|+++.... ...+++.+.++++||+++.....++ |+++
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~-------------------~~~~~v~~~~~~~Gf~~~~~~~~~~-Wv~l 250 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILK-------------------DRAPLVREAMAGAGFRPLEEAAEGE-WVLL 250 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG-------------------GGHHHHHHHHHHTTCEEEEEEEETT-EEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecch-------------------hhHHHHHHHHHHCCCEEEEEEEECC-EEEE
Confidence 35788899999999999999974311 1246888899999999888766655 6554
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.3e-19 Score=157.74 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=99.8
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCC--CCCCCCccEEEe--
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYV--PDKWGPLDVVFL-- 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~L--Pf~~~sFD~V~~-- 183 (274)
...+|.+|| ||||||..+..+++..+.+|+|||+|++|+++|+++.. ++.++.+|+..+ ++.+++||.|+.
T Consensus 50 ~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~ 129 (229)
T d1zx0a1 50 ASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT 129 (229)
T ss_dssp HTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred hccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence 346788999 99999999999987655789999999999999998753 367777777654 677899999973
Q ss_pred ---cccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHH-HhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 184 ---YFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQ-RKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 184 ---~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~-~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
.+.+.+..+++.++++++|+|||||+|++.+.. ..... ...+... .. ...+.+...+.++||+....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~---~~~~~~~~~~~~~-~~--~~~~~~~~~l~~agF~~~~i 200 (229)
T d1zx0a1 130 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT---SWGELMKSKYSDI-TI--MFEETQVPALLEAGFRRENI 200 (229)
T ss_dssp CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH---HHHHHTTTTCSCH-HH--HHHHHTHHHHHHTTCCGGGE
T ss_pred cccccccccccCHHHHHHHHHHHcCCCcEEEEEecC---Ccchhhhhhhhhc-ch--hhhhHHHHHHHHCCCeeEEE
Confidence 456777789999999999999999999985321 11111 1111110 00 01345566788899965443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=6.8e-18 Score=142.96 Aligned_cols=107 Identities=7% Similarity=-0.011 Sum_probs=91.6
Q ss_pred HHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----C--CCceEEEeeccCCCCCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----Y--DTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~--~~v~~~~gDae~LPf~~~s 177 (274)
+-+++.+.+.++.+|| +|||||.++..+++.++ +|+|+|+|+.|++.|+++ . .++++..+|+.+ +..+++
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~ 119 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSC
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCC
Confidence 4577888899999999 99999999999988775 999999999999999974 2 247899999977 667899
Q ss_pred ccEEEecccCcCCCC-HHHHHHHHHHhcCCCCEEEEEc
Q 023974 178 LDVVFLYFLPAMPFP-LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 178 FD~V~~~f~l~~~~d-~~~al~el~RvLKPGGrlvIs~ 214 (274)
||+|+++..++...+ .+++++++.|+|||||+++|..
T Consensus 120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999999977776555 3688999999999999998853
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2.1e-18 Score=149.54 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW 175 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~ 175 (274)
-..++++.+++++|++|| ||||||.++..+++. ++ ++|+++|.+++|++.|+++ ..++.++++|+.+.++.+
T Consensus 63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 466788999999999999 999999999999876 55 7999999999999999986 457889999999988888
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++||+|++.+++++++ .++.++|||||+|++.
T Consensus 143 ~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp CCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEE
T ss_pred cchhhhhhhccHHHhH------HHHHHhcCCCcEEEEE
Confidence 9999999999888764 3567889999999984
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.75 E-value=1.3e-17 Score=147.85 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=114.0
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~~ 176 (274)
...+++...+.+..+|| ||||+|.++..++++.| .+++++|+ ++|++.|+++. ..+.++.+|..+ |. +.
T Consensus 70 ~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-p~ 146 (256)
T d1qzza2 70 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-PV 146 (256)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SC
T ss_pred HHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-cc
Confidence 45677777888889999 99999999999999988 89999998 78999988763 347888898754 33 35
Q ss_pred CccEEEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcCCC---hhH---HHHHHhhC-cccccccCCCHHHHHHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHPQG---REA---LQKQRKQF-PDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~~g---r~~---l~~~~~~~-~~~si~~fps~~eL~~ll~ 247 (274)
.||+|++...+|++.|.+ ++|++++|+|||||+|+|.+... ... ........ .......-.|.+|+.++++
T Consensus 147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~ 226 (256)
T d1qzza2 147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG 226 (256)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 699999999999886654 67999999999999999975421 110 11111000 0001123468999999999
Q ss_pred hCCCcEeEEEecC
Q 023974 248 NHCFQIDNFVDES 260 (274)
Q Consensus 248 ~aGF~~v~~~d~~ 260 (274)
++||+++..+...
T Consensus 227 ~AGf~~~~~~~~~ 239 (256)
T d1qzza2 227 SAGLALASERTSG 239 (256)
T ss_dssp TTTEEEEEEEEEC
T ss_pred HCCCceeEEEEeC
Confidence 9999998887643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.2e-18 Score=158.25 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh--------------CCCc
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK--------------YDTV 161 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k--------------~~~v 161 (274)
|......++.+++.+++.++++|| ||||+|.++..+++..+ .+++|||+|++|++.|+++ ..++
T Consensus 133 ~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 133 GETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred hhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 344555788999999999999999 99999999998888766 6899999999999998853 4568
Q ss_pred eEEEeeccCCCCCCCCc--cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 162 KCWQGELIYVPDKWGPL--DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 162 ~~~~gDae~LPf~~~sF--D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+|++||+.++|+.+..| |+|+++ .+.+.+++.++++|++|+|||||++|+..
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEEECcccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 99999999999887766 456665 44456788999999999999999999864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=6.9e-17 Score=144.92 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=103.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPDKW 175 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf~~ 175 (274)
...++..+++.+|++|| +|||||.++..|++. ++ ++|+++|++++|++.|+++. .++.+..+|+.. .+..
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GFDE 170 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CCSC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cccc
Confidence 44678889999999999 999999999999886 46 89999999999999999863 246777788644 4567
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
..||.|+. .+++|.++++++.++|||||+|++.-|. +++. +++.+.+++.||..++
T Consensus 171 ~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~----~~Qv---------------~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 171 KDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT----TNQV---------------QETLKKLQELPFIRIE 226 (266)
T ss_dssp CSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS----HHHH---------------HHHHHHHHHSSEEEEE
T ss_pred cceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCc----ccHH---------------HHHHHHHHHCCceeEE
Confidence 88999875 4568999999999999999999986553 2222 3556677888996665
Q ss_pred EEe
Q 023974 256 FVD 258 (274)
Q Consensus 256 ~~d 258 (274)
..+
T Consensus 227 ~~E 229 (266)
T d1o54a_ 227 VWE 229 (266)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.2e-17 Score=141.98 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHHHHHHhC--CCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeec
Q 023974 104 RIDQIISAG--EIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGEL 168 (274)
Q Consensus 104 w~~~ll~~~--~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDa 168 (274)
-..++++.+ .+++|++|| ||||||..+..|++. ++ ++|++||.+++|++.|+++. .++.++.||+
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 356777777 789999999 999999999998885 55 79999999999999998653 4578999999
Q ss_pred cCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 169 IYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 169 e~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.+.+..+++||+|++..++..++ .++.+.|||||+||+.
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILP 180 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEE
Confidence 99998999999999998887653 3577899999999984
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.68 E-value=7.8e-17 Score=139.28 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEecccC
Q 023974 117 SSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLYFLP 187 (274)
Q Consensus 117 ~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l 187 (274)
+-.|| ||||+|..+..+++..| ..++|||+++.|++.|.++ ..|+.++++|+..++ ++++++|.|++.|..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 34789 99999999999999988 8999999999999998765 468999999999987 789999999999877
Q ss_pred cCCCCH--------HHHHHHHHHhcCCCCEEEEEc
Q 023974 188 AMPFPL--------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 188 ~~~~d~--------~~al~el~RvLKPGGrlvIs~ 214 (274)
.|+... .+.+++++|+|||||.|.|.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 776443 379999999999999999963
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.2e-16 Score=147.22 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=88.1
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhC----------------CCceEEE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKY----------------DTVKCWQ 165 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~----------------~~v~~~~ 165 (274)
...++..+++.||++|| +|||+|.++..|++. ++ ++|+++|++++|++.|++++ .++.+..
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 44678888999999999 999999999999886 66 89999999999999999753 3578999
Q ss_pred eeccCCCC--CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 166 GELIYVPD--KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 166 gDae~LPf--~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+|+.+..+ .+.+||+|+. .+++|.+++.++.++|||||+|++.-|
T Consensus 167 ~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp SCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred cchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeC
Confidence 99987653 5678999986 345788899999999999999999644
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.62 E-value=1e-15 Score=134.30 Aligned_cols=103 Identities=12% Similarity=0.107 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CCCceEEEeeccCCCCCCCCcc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YDTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~~v~~~~gDae~LPf~~~sFD 179 (274)
-...+++.+.++++++|| ||||||.++..|++.+ ++|+++|.++++++.|+++ +.++.++.+|+.....+.++||
T Consensus 58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 345688999999999999 9999999999998876 5999999999999999976 5678999999887665679999
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|++..+..+++ .++.+.|||||+|++-
T Consensus 137 ~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred HHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 999998876653 3456789999999983
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.62 E-value=1.5e-15 Score=131.11 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=85.0
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCC--CCCCCccEEEecccCc
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVP--DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LP--f~~~sFD~V~~~f~l~ 188 (274)
..|| ||||+|.++..+++..| ..++|||+++.|++.|.++ .+|+.++.+|+++++ ++++++|.|++.|---
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4799 99999999999999988 8999999999999998765 568999999999987 7889999999988665
Q ss_pred CCCCH--------HHHHHHHHHhcCCCCEEEEEc
Q 023974 189 MPFPL--------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 189 ~~~d~--------~~al~el~RvLKPGGrlvIs~ 214 (274)
|+... .+.+++++|+|||||.|.|.+
T Consensus 113 w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 65332 578999999999999999854
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=3.9e-15 Score=135.56 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=84.6
Q ss_pred HHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh------CCCceEEEeeccCCCCCCCCccE
Q 023974 108 IISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK------YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k------~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+.+.....+|.+|| ||||||.++..+++.+..+|+|+|.|+ |++.|+++ ..+++++++|++++++++++||+
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~ 108 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI 108 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence 33334445789999 999999999888888767999999996 77777754 23589999999999999999999
Q ss_pred EEec---ccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 181 VFLY---FLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 181 V~~~---f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
|++. ..+.+...++.++.++.|+|||||+++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9986 344555678899999999999999985
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=8.9e-15 Score=138.44 Aligned_cols=117 Identities=8% Similarity=0.026 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--------------Cc
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--------------TV 161 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--------------~v 161 (274)
|.....-+.++++.+++.++++|| ||||+|.++..++...+ ++|+|||+|+.|++.|+++.. ..
T Consensus 198 GEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 198 GELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred ccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 555556788999999999999999 99999999999988755 689999999999999997532 12
Q ss_pred eE-EEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 162 KC-WQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 162 ~~-~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.+ ..++..+.++. -...|+|+++. +.+.+++.++|+|++|+|||||+|+++++
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 22 34544443322 24568888763 44567889999999999999999998654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.4e-14 Score=128.97 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=83.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccE
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
.+.+...+.++.+|| ||||||.++..+++.++.+|+|+|.|+.|+..++.. ..+++++++|++++++.+++||+
T Consensus 26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred HHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceE
Confidence 344444666889999 999999999999888777999999999987544321 24589999999999999999999
Q ss_pred EEecccCcC---CCCHHHHHHHHHHhcCCCCEEEE
Q 023974 181 VFLYFLPAM---PFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 181 V~~~f~l~~---~~d~~~al~el~RvLKPGGrlvI 212 (274)
|++....+. ...++.++....|.|||||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 998633332 22355777778899999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.51 E-value=2e-14 Score=125.51 Aligned_cols=103 Identities=10% Similarity=0.075 Sum_probs=85.6
Q ss_pred HHHHHHhC--CCCCCCeEE-EEcCchHHHHHHHHh-C-----C-CcEEEEeCcHHHHHHHHHh----------CCCceEE
Q 023974 105 IDQIISAG--EIDESSKVL-VSISSEEFVDRVVES-S-----P-SLLLVVHDSLFVLAGIKEK----------YDTVKCW 164 (274)
Q Consensus 105 ~~~ll~~~--~~~~~~rVL-vGcGTG~l~~~L~~~-~-----~-~~V~gVD~S~~ML~~Ar~k----------~~~v~~~ 164 (274)
..++++.+ .++++++|| ||||||.++..|++. + + .+|++||.+++|++.|+++ ..++.++
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 45677776 789999999 999999999888764 1 1 4899999999999999875 3478999
Q ss_pred EeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 165 QGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 165 ~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++|+.+...+.++||+|++..+...++ ..+.+.|||||++++.
T Consensus 147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 147 EGDGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEE
T ss_pred ecccccccccccceeeEEEEeechhch------HHHHHhcCCCcEEEEE
Confidence 999999877889999999998876553 2456789999999984
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.3e-14 Score=131.53 Aligned_cols=99 Identities=11% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----C-CCceEEEeeccCCCCCCCCccEEEecc
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----Y-DTVKCWQGELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~-~~v~~~~gDae~LPf~~~sFD~V~~~f 185 (274)
.+.+|.+|| ||||||.++..+++.++.+|+|||.|+.| ..|++. . .+++++++|+++++++.++||+|++..
T Consensus 30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 345789999 99999999988888876789999999865 444332 2 358999999999999999999999763
Q ss_pred c---CcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 186 L---PAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 186 ~---l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
. +.+...++.++.++.|+|||||+++-
T Consensus 109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 109 MGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3 34445788999999999999999864
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.51 E-value=2.2e-14 Score=124.89 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~s 177 (274)
-..++++.++++++++|| ||||||.+++.|++....+|++||..++|++.|+++ ..++.+++||+.+.....++
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 456888899999999999 999999999998876335899999999999999975 46899999999987777899
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||+|++..+...++ +. +...|||||++++-
T Consensus 146 fD~Iiv~~a~~~ip--~~----l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIP--EP----LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCC--HH----HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCC--HH----HHHhcCCCCEEEEE
Confidence 99999998887653 33 44569999999983
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.50 E-value=3.9e-14 Score=125.06 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=113.1
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
....+++... .....+|| ||||+|.++..++++.| .+++..|+ +++++.+. ....++++.||..+ |.+ ..|+
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~-~~~ri~~~~gd~~~-~~p--~~D~ 142 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP-PLSGIEHVGGDMFA-SVP--QGDA 142 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-CCTTEEEEECCTTT-CCC--CEEE
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccC-CCCCeEEecCCccc-ccc--cceE
Confidence 3456666666 56678999 99999999999999998 89999998 44554332 24568999999754 222 3599
Q ss_pred EEecccCcCCCCHH--HHHHHHHHhcCCCCEEEEEcC---C-Ch-hHHHHHHhhC----cccccccCCCHHHHHHHHHhC
Q 023974 181 VFLYFLPAMPFPLD--QVFETLANRCSPGARVVISHP---Q-GR-EALQKQRKQF----PDVIVSDLPDQMTLQKAAGNH 249 (274)
Q Consensus 181 V~~~f~l~~~~d~~--~al~el~RvLKPGGrlvIs~~---~-gr-~~l~~~~~~~----~~~si~~fps~~eL~~ll~~a 249 (274)
|++...+|+.+|.+ ++|++++++|+|||+|+|.+. . +. .........+ .......-.|.+|+.++++++
T Consensus 143 ~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~A 222 (244)
T d1fp1d2 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLS 222 (244)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHT
T ss_pred EEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHc
Confidence 99999998876644 789999999999999999642 1 11 1111111110 001112235789999999999
Q ss_pred CCcEeEEEecCCeEEEEEEecC
Q 023974 250 CFQIDNFVDESGFYLVVLKFSK 271 (274)
Q Consensus 250 GF~~v~~~d~~~~yl~v~~~~~ 271 (274)
||+.+++.......+.|++..|
T Consensus 223 GF~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 223 GFSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp TCSEEEEEEEETTTEEEEEEEC
T ss_pred CCCceEEEecCCCCEEEEEEeC
Confidence 9998887655444456776543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=6.4e-14 Score=119.89 Aligned_cols=140 Identities=12% Similarity=0.162 Sum_probs=107.0
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCC-----C
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVP-----D 173 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LP-----f 173 (274)
++++++.+.+.++..+| ++||||..+..++++.+ ++|+|+|.+++||+.|+++.. ++.+++++..++. +
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence 67888999999999999 99999999999999876 899999999999999998753 4789999887753 4
Q ss_pred CCCCccEEEecccC---------cCCCCHHHHHHHHHHhcCCCCEEEEEcCCChh--HHHHHHhhCcccc-cc---cCCC
Q 023974 174 KWGPLDVVFLYFLP---------AMPFPLDQVFETLANRCSPGARVVISHPQGRE--ALQKQRKQFPDVI-VS---DLPD 238 (274)
Q Consensus 174 ~~~sFD~V~~~f~l---------~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~--~l~~~~~~~~~~s-i~---~fps 238 (274)
..++||.|+.-++. +.+...++++..+.++|+|||+++|....... ....+...+.... +. -.|+
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~~~~~~i~~k~I~ps 171 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRILTEKPVRPS 171 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHCSSEEESCSSCBCCC
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhccccccCCCCCcCcC
Confidence 46899999977666 55567789999999999999999886443211 2223333332211 11 2577
Q ss_pred HHHHHH
Q 023974 239 QMTLQK 244 (274)
Q Consensus 239 ~~eL~~ 244 (274)
.+|+++
T Consensus 172 ~~Ei~~ 177 (192)
T d1m6ya2 172 EEEIRE 177 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=4.8e-13 Score=120.26 Aligned_cols=136 Identities=8% Similarity=0.097 Sum_probs=103.1
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW 175 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~ 175 (274)
.++...+.... ..+.+|| +|||||.++..++...| .+|+|+|+|+..++.|+++ ..+++|+++|..+ +..+
T Consensus 96 ~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~ 173 (274)
T d2b3ta1 96 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAG 173 (274)
T ss_dssp HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTT
T ss_pred hhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCC
Confidence 36666666654 3456899 99999999999988877 8999999999999999976 3479999999865 4557
Q ss_pred CCccEEEec--ccCcC-----------C------------CCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcc
Q 023974 176 GPLDVVFLY--FLPAM-----------P------------FPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPD 230 (274)
Q Consensus 176 ~sFD~V~~~--f~l~~-----------~------------~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~ 230 (274)
++||+|++| |.... . ...++.+++..+.|+|||.+++-+....
T Consensus 174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q------------ 241 (274)
T d2b3ta1 174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQ------------ 241 (274)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSC------------
T ss_pred CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchH------------
Confidence 899999998 44321 1 0134578888999999999999643211
Q ss_pred cccccCCCHHHHHHHHHhCCCcEe-EEEecC
Q 023974 231 VIVSDLPDQMTLQKAAGNHCFQID-NFVDES 260 (274)
Q Consensus 231 ~si~~fps~~eL~~ll~~aGF~~v-~~~d~~ 260 (274)
.+++.+++++.||..+ .++|-.
T Consensus 242 --------~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 242 --------GEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp --------HHHHHHHHHHTTCTTCCEEECTT
T ss_pred --------HHHHHHHHHHCCCCeEEEEECCC
Confidence 3577889999999644 455543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.3e-11 Score=109.71 Aligned_cols=145 Identities=8% Similarity=0.117 Sum_probs=104.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CC-CceEEEeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YD-TVKCWQGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~-~v~~~~gDae~LPf~~~ 176 (274)
.+.++.+. +.+|++|| +|||+|.++..+++.+.++|+|+|+++.+++.|+++ .. .+++++||+.+++. .+
T Consensus 97 er~ri~~~--~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-~~ 173 (260)
T d2frna1 97 ERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-EN 173 (260)
T ss_dssp HHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CS
T ss_pred HHHHHHhh--cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-CC
Confidence 44455554 46899999 999999999988887657999999999999999875 23 48999999999875 58
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
.||.|+++.- ..-.+.+.+..+.|||||.+.+........ .. . -..+.+.+.++..||++...
T Consensus 174 ~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~------~~------~-~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 174 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL------MP------R-EPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG------TT------T-TTHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEecccccc------ch------h-hHHHHHHHHHHHcCCceEEE
Confidence 8999998632 234567888889999999997632210000 00 0 12466778888999976533
Q ss_pred Ee------cCCeEEEEEE
Q 023974 257 VD------ESGFYLVVLK 268 (274)
Q Consensus 257 ~d------~~~~yl~v~~ 268 (274)
.. .+..|..|+-
T Consensus 237 ~~~~Vk~yaP~~~~v~~D 254 (260)
T d2frna1 237 NELKIKRYAPGVWHVVLD 254 (260)
T ss_dssp EEEEEEEETTTEEEEEEE
T ss_pred EEEEEECcCCCccEEEEE
Confidence 22 3566766654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.30 E-value=3.4e-12 Score=111.78 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=104.5
Q ss_pred HHHHHHHhCCC-CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-CCCCCCCcc
Q 023974 104 RIDQIISAGEI-DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~-~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-LPf~~~sFD 179 (274)
+...+++.... ....+|| ||||+|.++..++++.| .++++.|+.+ +++.++ ..++++++.+|..+ +|. .|
T Consensus 68 ~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~-~~~r~~~~~~d~~~~~P~----ad 141 (243)
T d1kyza2 68 TMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP-SYPGVEHVGGDMFVSIPK----AD 141 (243)
T ss_dssp HHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC-CCTTEEEEECCTTTCCCC----CS
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc-cCCceEEecccccccCCC----cc
Confidence 44566666554 4457899 99999999999999998 8999999965 444332 34678999999854 443 46
Q ss_pred EEEecccCcCCCC--HHHHHHHHHHhcCCCCEEEEEcCC----ChhHHHHHHhhCccc-----c-cccCCCHHHHHHHHH
Q 023974 180 VVFLYFLPAMPFP--LDQVFETLANRCSPGARVVISHPQ----GREALQKQRKQFPDV-----I-VSDLPDQMTLQKAAG 247 (274)
Q Consensus 180 ~V~~~f~l~~~~d--~~~al~el~RvLKPGGrlvIs~~~----gr~~l~~~~~~~~~~-----s-i~~fps~~eL~~ll~ 247 (274)
++++...+|...| ..++|++++++|+|||+++|.+.. ...........+.+. . ...-.+.+|++++++
T Consensus 142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~ 221 (243)
T d1kyza2 142 AVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAK 221 (243)
T ss_dssp CEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHH
T ss_pred eEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHH
Confidence 7777777776654 448899999999999999996421 111111111111110 0 112357899999999
Q ss_pred hCCCcEeEEEecCC
Q 023974 248 NHCFQIDNFVDESG 261 (274)
Q Consensus 248 ~aGF~~v~~~d~~~ 261 (274)
++||+.+++.....
T Consensus 222 ~AGf~~vkv~~~~~ 235 (243)
T d1kyza2 222 GAGFQGFKVHCNAF 235 (243)
T ss_dssp HHCCSCEEEEEEET
T ss_pred HcCCCcEEEEEeCC
Confidence 99999888765443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.28 E-value=1e-11 Score=109.22 Aligned_cols=148 Identities=13% Similarity=0.151 Sum_probs=106.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
....+|| ||||+|.++..++++.| .+++..|+ ++.++.+.. .++++++.||..+ |. ..+|++++...+|+..|
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~-~~rv~~~~gD~f~-~~--p~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG-SNNLTYVGGDMFT-SI--PNADAVLLKYILHNWTD 153 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-BTTEEEEECCTTT-CC--CCCSEEEEESCGGGSCH
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcc-cCceEEEecCccc-CC--CCCcEEEEEeecccCCh
Confidence 3446899 99999999999999988 89999999 455554432 3569999999865 22 35799999999998876
Q ss_pred HH--HHHHHHHHhcCCC---CEEEEEcC----CC-hhHHHHHHhhC---cccccccCCCHHHHHHHHHhCCCcEeEEEec
Q 023974 193 LD--QVFETLANRCSPG---ARVVISHP----QG-REALQKQRKQF---PDVIVSDLPDQMTLQKAAGNHCFQIDNFVDE 259 (274)
Q Consensus 193 ~~--~al~el~RvLKPG---GrlvIs~~----~g-r~~l~~~~~~~---~~~si~~fps~~eL~~ll~~aGF~~v~~~d~ 259 (274)
.+ ++|+.+++.|+|| |+++|.+. .+ ..........+ .-+....-.|.+|++++++++||++++....
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~ 233 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL 233 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEEEC
Confidence 65 7899999999999 88888542 11 11111111111 0111234568999999999999999998876
Q ss_pred CCeEEEEEE
Q 023974 260 SGFYLVVLK 268 (274)
Q Consensus 260 ~~~yl~v~~ 268 (274)
... +.|++
T Consensus 234 ~~~-~svIE 241 (244)
T d1fp2a2 234 TGF-LSLIE 241 (244)
T ss_dssp ETT-EEEEE
T ss_pred CCC-eEEEE
Confidence 664 46654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=9e-12 Score=106.91 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=66.7
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEE
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVV 181 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V 181 (274)
.|+..+....++ +|.+|| +|||||.++..++..++.+|+|||+++++++.|+++.+++.++++|+.+++ +.||+|
T Consensus 36 ~~~~~~~~~~dl-~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~V 111 (197)
T d1ne2a_ 36 YFLIEIYNDGNI-GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTW 111 (197)
T ss_dssp HHHHHHHHHTSS-BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEE
T ss_pred HHHHHHHHcCCC-CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEE
Confidence 355444444444 578999 999999998887777767899999999999999999999999999998875 679999
Q ss_pred Eec--ccC
Q 023974 182 FLY--FLP 187 (274)
Q Consensus 182 ~~~--f~l 187 (274)
+++ |+.
T Consensus 112 i~NPPfg~ 119 (197)
T d1ne2a_ 112 IMNPPFGS 119 (197)
T ss_dssp EECCCC--
T ss_pred EeCcccch
Confidence 999 654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.28 E-value=3.7e-12 Score=116.15 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC----CCCCCCCccEEE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY----VPDKWGPLDVVF 182 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~----LPf~~~sFD~V~ 182 (274)
+.+|.+|| +|||||.++..++..+..+|++||+|+.+++.|+++. .+++++++|+.+ ++..+++||+|+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 56889999 9999999999888776679999999999999999863 257899999865 455678999999
Q ss_pred ec---ccCcCC------CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 183 LY---FLPAMP------FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 183 ~~---f~l~~~------~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+. +..+-. .+..+.+....++|||||+|+.+.
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 86 222211 023446777889999999999864
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=7.9e-12 Score=113.83 Aligned_cols=99 Identities=14% Similarity=0.096 Sum_probs=78.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC----CCCCCCCccEEEec
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY----VPDKWGPLDVVFLY 184 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~----LPf~~~sFD~V~~~ 184 (274)
.+|.+|| ++||||.++..++..+ .+|++||.|+.||+.|++. ..+++++++|+.+ ++...+.||+|++.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCCeeeccCCCCcHHHHHHHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 3688999 9999999998887644 5999999999999999976 3578999999876 45567899999986
Q ss_pred ---ccCcCC------CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 185 ---FLPAMP------FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 185 ---f~l~~~------~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
++.... .+..+.+..+.++|||||.|+++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 222211 123356778899999999999864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.17 E-value=3.4e-11 Score=109.76 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-------CCceEEEeeccC-
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-------DTVKCWQGELIY- 170 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-------~~v~~~~gDae~- 170 (274)
+++..++++++ .+.+|.+|| ++||||.++..++..+..+|++||.|+.+++.|+++. .+++++++|+.+
T Consensus 130 DqR~~r~~l~~--~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~ 207 (317)
T d2b78a2 130 DQRQVRNELIN--GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY 207 (317)
T ss_dssp GGHHHHHHHHH--TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH
T ss_pred HHHHHHHHHHH--HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH
Confidence 44445555654 346789999 9999999998877666578999999999999999762 257899999954
Q ss_pred ---CCCCCCCccEEEec---ccCc--CCC----CHHHHHHHHHHhcCCCCEEEEEc
Q 023974 171 ---VPDKWGPLDVVFLY---FLPA--MPF----PLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 171 ---LPf~~~sFD~V~~~---f~l~--~~~----d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+....+.||+|++- |+.+ ... +..+.++...++|+|||.|+++.
T Consensus 208 l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 208 FKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp HHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 23356799999985 3221 111 34457777889999999999953
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.13 E-value=2.3e-11 Score=99.13 Aligned_cols=99 Identities=21% Similarity=0.153 Sum_probs=76.6
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccC-CCCCCCCccEEEecccC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIY-VPDKWGPLDVVFLYFLP 187 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~-LPf~~~sFD~V~~~f~l 187 (274)
.|.+|| +|||||.++...+.++..+|++||.++++++.+++.. .+++++++|+.+ ++...++||+|++. -+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D-PP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD-PP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC-CS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec-hh
Confidence 678999 9999999998777777679999999999999998752 237899999988 45667899999986 11
Q ss_pred cCCCCHHHHHHHH--HHhcCCCCEEEEEcC
Q 023974 188 AMPFPLDQVFETL--ANRCSPGARVVISHP 215 (274)
Q Consensus 188 ~~~~d~~~al~el--~RvLKPGGrlvIs~~ 215 (274)
-........+..+ .+.|+|||.+++.+.
T Consensus 93 y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 YAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 1111234556555 367999999999653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.09 E-value=1.1e-10 Score=98.80 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=71.2
Q ss_pred CCeEE-EEcCchH----HHHHHHHhCC-----CcEEEEeCcHHHHHHHHHh-CC--------------------------
Q 023974 117 SSKVL-VSISSEE----FVDRVVESSP-----SLLLVVHDSLFVLAGIKEK-YD-------------------------- 159 (274)
Q Consensus 117 ~~rVL-vGcGTG~----l~~~L~~~~~-----~~V~gVD~S~~ML~~Ar~k-~~-------------------------- 159 (274)
.-||+ +|||||. ++..+.+... -+|+|.|+|+.+|++|++- |+
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 35999 9999997 3444444311 3699999999999999842 10
Q ss_pred ---------CceEEEeeccCC-CCCCCCccEEEecccCcCCCCH--HHHHHHHHHhcCCCCEEEEEcCC
Q 023974 160 ---------TVKCWQGELIYV-PDKWGPLDVVFLYFLPAMPFPL--DQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 160 ---------~v~~~~gDae~L-Pf~~~sFD~V~~~f~l~~~~d~--~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.+.+.+.+.... +...+.||+|+|-.++..+.+. +++++.+++.|||||.|++++..
T Consensus 105 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred eehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 012333333322 2345889999999888776544 59999999999999999998654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=8.2e-10 Score=93.97 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=71.8
Q ss_pred HhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccCCCCCCCCccEEEec
Q 023974 110 SAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 110 ~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
...+--+|.+|| +|||||.++..++.++..+|+|||+++.+++.|++... +.+++++|+.++ ++.||+|+++
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 334444678999 99999999988877776799999999999999998643 468899998776 4679999998
Q ss_pred --ccCcCC-CCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 185 --FLPAMP-FPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 185 --f~l~~~-~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
|+.... .|. ..+. +.+.+++.++..|..
T Consensus 117 PP~~~~~~~~d~-~~l~---~~~~~~~~v~~ih~~ 147 (201)
T d1wy7a1 117 PPFGSQRKHADR-PFLL---KAFEISDVVYSIHLA 147 (201)
T ss_dssp CCCSSSSTTTTH-HHHH---HHHHHCSEEEEEEEC
T ss_pred CccccccccccH-HHHH---HHHhhcccchhcccc
Confidence 433221 122 2222 334456766666544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.02 E-value=4.9e-10 Score=98.01 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWG 176 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~ 176 (274)
+...++++++.+++.++++|| ||||||.+|..|++.+ .+|+|||+++.|++.+++++ +++++++||+.++++...
T Consensus 6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence 345788999999999999999 9999999999999887 49999999999999999875 568999999999887655
Q ss_pred CccEEEec
Q 023974 177 PLDVVFLY 184 (274)
Q Consensus 177 sFD~V~~~ 184 (274)
....|+.|
T Consensus 85 ~~~~vv~N 92 (235)
T d1qama_ 85 QSYKIFGN 92 (235)
T ss_dssp CCCEEEEE
T ss_pred ccceeeee
Confidence 55566666
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.7e-09 Score=93.67 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCCC--CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCC
Q 023974 103 QRIDQIISAGEID--ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVP 172 (274)
Q Consensus 103 ~w~~~ll~~~~~~--~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LP 172 (274)
.|+.+++...... +.-+|| +|||||.++..|+.+.+ .+|+|+|+|+++++.|++.. ..+.+.+.+....-
T Consensus 46 ~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~ 125 (250)
T d2h00a1 46 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 125 (250)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence 4777777554332 335899 99999999999988765 89999999999999999863 23566665544322
Q ss_pred ------CCCCCccEEEec
Q 023974 173 ------DKWGPLDVVFLY 184 (274)
Q Consensus 173 ------f~~~sFD~V~~~ 184 (274)
..++.||+|+||
T Consensus 126 ~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 126 MDALKEESEIIYDFCMCN 143 (250)
T ss_dssp TTTSTTCCSCCBSEEEEC
T ss_pred hhhhhhcccCceeEEEec
Confidence 235689999999
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=3.3e-10 Score=97.57 Aligned_cols=112 Identities=20% Similarity=0.107 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhC------CCceEEEee
Q 023974 97 NFKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKY------DTVKCWQGE 167 (274)
Q Consensus 97 ~~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gD 167 (274)
-|++.-+.+..+++..+ ..+|| +|||+|..+..+++.. + ++|+++|.+++|++.|++.. ..+++++||
T Consensus 40 i~~~~G~lL~~lv~~~k---pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd 116 (214)
T d2cl5a1 40 VGDAKGQIMDAVIREYS---PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 116 (214)
T ss_dssp CHHHHHHHHHHHHHHHC---CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred cCHHHHHHHHHHHHhhC---CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence 35566667888887664 35899 9999999999998753 3 79999999999999998652 248999999
Q ss_pred ccCC-C-----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 168 LIYV-P-----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 168 ae~L-P-----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
+.++ | +..++||+|++-...... .....+.+..+.|||||.+++
T Consensus 117 ~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 117 SQDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEE
Confidence 8773 3 345789999987433222 223457788899999998876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.98 E-value=1.6e-10 Score=96.08 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred CCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC----CceEEEeeccC----CCCCCCCccEEEe
Q 023974 113 EIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD----TVKCWQGELIY----VPDKWGPLDVVFL 183 (274)
Q Consensus 113 ~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~----~v~~~~gDae~----LPf~~~sFD~V~~ 183 (274)
.+.+|.+|| +|||||.++..++.++. +|++||.++.|++.+++... +.++...|+.. ....+++||+|++
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 356788999 99999999988888774 89999999999999997632 23455555432 2345688999998
Q ss_pred c--ccCcCCCCHHHHHHHHH--HhcCCCCEEEEEcCC
Q 023974 184 Y--FLPAMPFPLDQVFETLA--NRCSPGARVVISHPQ 216 (274)
Q Consensus 184 ~--f~l~~~~d~~~al~el~--RvLKPGGrlvIs~~~ 216 (274)
. |.. +..+.+.++. ..|+|||.+++.|+.
T Consensus 117 DPPY~~----~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 117 APPYAM----DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CCCTTS----CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cccccc----CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 6 332 3344555543 579999999997653
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.94 E-value=3.9e-10 Score=102.70 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccCC
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIYV 171 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~L 171 (274)
..+.|+++.+.. ..++.||| ++||||.++..++..+. +|++||.|+.+|+.|++.. . .++|+++|+.+.
T Consensus 118 ~nr~~~~~~~~~--~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~ 194 (309)
T d2igta1 118 VHWEWLKNAVET--ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF 194 (309)
T ss_dssp HHHHHHHHHHHH--SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred HHHHHHHHHHhh--ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh
Confidence 344455555543 45678999 99999999999887774 8999999999999999752 2 478999999663
Q ss_pred ----CCCCCCccEEEec---ccCcCC-------CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 172 ----PDKWGPLDVVFLY---FLPAMP-------FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 172 ----Pf~~~sFD~V~~~---f~l~~~-------~d~~~al~el~RvLKPGGrlvIs 213 (274)
....+.||+|++. |+..-- .+....+..+.++|+|||.+++.
T Consensus 195 l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 195 IQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred HHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 2346899999985 443211 13345556778899999987664
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=1.6e-09 Score=96.87 Aligned_cols=113 Identities=10% Similarity=0.154 Sum_probs=78.6
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---CC---CceEEEeeccC-CCCC
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---YD---TVKCWQGELIY-VPDK 174 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---~~---~v~~~~gDae~-LPf~ 174 (274)
.++..+++...-....+|| +|||+|.++..+++....+|+|+|+|++-++.|+++ +. .+.+..+|..+ ++..
T Consensus 97 ~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~ 176 (271)
T d1nv8a_ 97 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK 176 (271)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG
T ss_pred hhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc
Confidence 3555555544434456899 999999998888765338999999999999999975 22 35677888766 3445
Q ss_pred CCCccEEEec--ccCcCC-------CCHHHH----------HHH-HHHhcCCCCEEEEEcC
Q 023974 175 WGPLDVVFLY--FLPAMP-------FPLDQV----------FET-LANRCSPGARVVISHP 215 (274)
Q Consensus 175 ~~sFD~V~~~--f~l~~~-------~d~~~a----------l~e-l~RvLKPGGrlvIs~~ 215 (274)
.+.||+|++| |..... .+|..| +++ +.+.|+|||.+++-+.
T Consensus 177 ~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 177 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5899999998 432220 123322 222 4577999999998654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.84 E-value=1.2e-10 Score=102.60 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCCCCCCcc
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPDKWGPLD 179 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf~~~sFD 179 (274)
.++++++.+++.++++|| ||||||.+|..|++.+. +|+|||+++.|++.+++++ ++++++.+|+.++++....++
T Consensus 17 ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~ 95 (245)
T d1yuba_ 17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceee
Confidence 578999999999999999 99999999999999874 9999999999999999886 468999999999998888888
Q ss_pred EEEecccC
Q 023974 180 VVFLYFLP 187 (274)
Q Consensus 180 ~V~~~f~l 187 (274)
.|+++.-.
T Consensus 96 ~vv~NLPY 103 (245)
T d1yuba_ 96 KIVGNIPY 103 (245)
T ss_dssp EEEEECCS
T ss_pred eEeeeeeh
Confidence 88877444
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.7e-09 Score=88.37 Aligned_cols=130 Identities=8% Similarity=0.028 Sum_probs=94.8
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccC-CCCCCCCccEEEecccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIY-VPDKWGPLDVVFLYFLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~-LPf~~~sFD~V~~~f~l~ 188 (274)
++.+|| ++||||.++...+.++..+|+.||.++..++.+++. ..+.+++++|+.+ +...+..||+|++.=-..
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 567999 999999999988888877999999999999999874 3467889999876 445678999999872112
Q ss_pred CCCCHHHHHHHHHH--hcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEecCCeEEEE
Q 023974 189 MPFPLDQVFETLAN--RCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVDESGFYLVV 266 (274)
Q Consensus 189 ~~~d~~~al~el~R--vLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d~~~~yl~v 266 (274)
....++++..+.+ .|+|+|.+++.+.... ....++ .||++...+.-.+..+.+
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~-------------~~~~~~-----------~~~~i~k~k~yG~t~i~~ 177 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVESEVEN-------------GLPTVP-----------ANWSLHREKVAGQVAYRL 177 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG-------------CSCCCC-----------TTEEEEEEEEETTEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEecCcC-------------CcccCC-----------CCcEEEEEEEeCcEEEEE
Confidence 2345677777755 6999999998543210 011112 367777766667777777
Q ss_pred EEec
Q 023974 267 LKFS 270 (274)
Q Consensus 267 ~~~~ 270 (274)
+++.
T Consensus 178 ~~k~ 181 (183)
T d2fpoa1 178 YQRE 181 (183)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.82 E-value=2.7e-09 Score=95.16 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh---------------CCCceEEEeeccCCCCCCCC
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK---------------YDTVKCWQGELIYVPDKWGP 177 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k---------------~~~v~~~~gDae~LPf~~~s 177 (274)
.....+|| ||+|.|..+..+++....+|++||+++++++.|++- .+.++++.+|+.+.--.++.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 34557999 999999999888765447899999999999999863 34678999999764445689
Q ss_pred ccEEEeccc-CcCCC---CHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFL-PAMPF---PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~-l~~~~---d~~~al~el~RvLKPGGrlvIs 213 (274)
||+|++-.. ..... --.+.++.+.+.|+|||.+++.
T Consensus 150 yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 999997522 11111 1257899999999999999883
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.2e-08 Score=88.11 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeec
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGEL 168 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDa 168 (274)
+.+.-+.+..+++..+ ..+|| ||||||.-+..+++.-+ ++|+.+|.++++.+.|++.. ..++++.||+
T Consensus 44 ~~~~g~lL~~L~~~~~---~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda 120 (219)
T d2avda1 44 TCEQAQLLANLARLIQ---AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA 120 (219)
T ss_dssp CHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred CHHHHHHHHHHHHccC---CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence 4455556667766554 46899 99999999999987633 89999999999999999753 3488999998
Q ss_pred cC-CC-----CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 169 IY-VP-----DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 169 e~-LP-----f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.+ ++ ...++||.|++-..- .+....+..+.+.|+|||.+++-+..
T Consensus 121 ~e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 121 LETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 66 33 236899999987443 34567788899999999999995543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.80 E-value=4.1e-09 Score=88.26 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=82.3
Q ss_pred HHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCC----CC
Q 023974 106 DQIISAGE-IDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYV----PD 173 (274)
Q Consensus 106 ~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~L----Pf 173 (274)
..++..+. .-+|.+|| ++||||.++...+.+|...|++||.++++++.+++.. .+++++++|+.+. ..
T Consensus 30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~ 109 (182)
T d2fhpa1 30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 109 (182)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc
Confidence 34444443 35789999 9999999999888888778999999999999999753 2578999998762 23
Q ss_pred CCCCccEEEec--ccCcCCCCHHHHHHHHHH--hcCCCCEEEEEcC
Q 023974 174 KWGPLDVVFLY--FLPAMPFPLDQVFETLAN--RCSPGARVVISHP 215 (274)
Q Consensus 174 ~~~sFD~V~~~--f~l~~~~d~~~al~el~R--vLKPGGrlvIs~~ 215 (274)
....||+|++- |.- .+..+.+..+.. .|+|||.+++.+.
T Consensus 110 ~~~~fDlIflDPPY~~---~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 110 EKLQFDLVLLDPPYAK---QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp TTCCEEEEEECCCGGG---CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cCCCcceEEechhhhh---hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 46789999986 322 355677887754 6999999988653
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=4.5e-09 Score=95.36 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=77.2
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC----------CCceEEEeeccC-CCCCCCCccEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY----------DTVKCWQGELIY-VPDKWGPLDVV 181 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~----------~~v~~~~gDae~-LPf~~~sFD~V 181 (274)
+...+|| ||.|.|..+..+++..+ .+|++||+++++++.|++.+ ++++++.+|+.+ |...++.||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4457999 99999999998887655 79999999999999999764 457899999977 34456789999
Q ss_pred Eeccc--CcC--CC---CHHHHHHHHHHhcCCCCEEEE
Q 023974 182 FLYFL--PAM--PF---PLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 182 ~~~f~--l~~--~~---d~~~al~el~RvLKPGGrlvI 212 (274)
++-.. +.. .. --.+.++.+.|.|||||.+++
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 96532 111 00 115789999999999999988
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=2.4e-08 Score=90.06 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=77.3
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
+...+|| ||.|.|..+..+++..+ .+|++||++++|++.|++-+ ++++++.+|+.+ |-..++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 3447999 99999999999887655 78999999999999999743 568999999876 444567899999
Q ss_pred eccc-Cc-----CCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFL-PA-----MPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~-l~-----~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-.. .. .. --.+.++.+.+.|+|||.+++.
T Consensus 168 ~D~~dp~~~~~~~L-~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHL-FTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC----------C-CSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCcCchhhh-ccHHHHHHHHhhcCCCcEEEEe
Confidence 6522 11 11 1258999999999999999984
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=3.8e-08 Score=88.19 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=78.0
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCcc
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLD 179 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD 179 (274)
+......+|| ||-|.|..+..+.+..+ .+|+.||+.+++++.|++-+ ++++++.+|+.+ |-...+.||
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3445557999 99999999999987644 79999999999999999754 568999999866 334567899
Q ss_pred EEEeccc-CcCCC---CHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFL-PAMPF---PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~-l~~~~---d~~~al~el~RvLKPGGrlvIs 213 (274)
+|++-.. ..... --.+.++.+.|.|+|||.+++.
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 9997632 11111 1247799999999999999984
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=3.7e-08 Score=82.81 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=88.9
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC-----CCCCC
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP-----DKWGP 177 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP-----f~~~s 177 (274)
++++++.+.+.+|..++ ..+|+|-.+..+++.+ ++|+|+|..+++++.|++++ +++.+++++..++. ...+.
T Consensus 7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence 56788888999999999 9999999999988875 69999999999999999864 46888888776654 33578
Q ss_pred ccEEEecccCcCC---------CCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 178 LDVVFLYFLPAMP---------FPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 178 FD~V~~~f~l~~~---------~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
+|.|+.-.++... ...+..|......|+|||+++|....
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 9999977655322 13445778889999999999986443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=7.4e-08 Score=83.52 Aligned_cols=113 Identities=9% Similarity=0.034 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhC------CCceEEEeec
Q 023974 98 FKEHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKY------DTVKCWQGEL 168 (274)
Q Consensus 98 ~~~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDa 168 (274)
+.+.-+.+..+++..+ ..+|| ||||+|.-+..+++.-+ ++|+.+|.++++.+.|++.. ..++++.||+
T Consensus 44 ~~~~g~~L~~L~~~~~---~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a 120 (227)
T d1susa1 44 SADEGQFLSMLLKLIN---AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 120 (227)
T ss_dssp CHHHHHHHHHHHHHHT---CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHHhcC---CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence 3344456677766653 46899 99999999999987643 89999999999999999753 2489999999
Q ss_pred cCC-CC------CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCC
Q 023974 169 IYV-PD------KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQ 216 (274)
Q Consensus 169 e~L-Pf------~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~ 216 (274)
.+. |. ..++||.||+-..- ......++.+.+.|+|||.+++-+..
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HHHHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 763 31 35789999997543 34567888889999999999995443
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.55 E-value=8.4e-08 Score=86.02 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CC-CCCCCccE
Q 023974 114 IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VP-DKWGPLDV 180 (274)
Q Consensus 114 ~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LP-f~~~sFD~ 180 (274)
.+...+|| ||-|.|..+..+.+..+ .+|+.||+++++++.|++-+ ++++++.+|+.+ +. ..++.||+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 34557999 99999999999988656 79999999999999998743 568899999765 32 23568999
Q ss_pred EEeccc-CcCCC---CHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFL-PAMPF---PLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~-l~~~~---d~~~al~el~RvLKPGGrlvIs 213 (274)
|++-.. +.... --.+.++.+.|.|+|||.+++.
T Consensus 158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 996522 11111 1257899999999999999985
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.55 E-value=3.4e-08 Score=82.32 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC-C-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccE
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS-P-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~-~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
..+-+++.+...++++|| .|||||.++..+.++. . ..++|+|+.+.+++.+ ....++++|....+ ....||+
T Consensus 7 i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----~~~~~~~~~~~~~~-~~~~fd~ 81 (223)
T d2ih2a1 7 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGEAFDL 81 (223)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSSCEEE
T ss_pred HHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----ccceeeeeehhccc-cccccce
Confidence 445678888889999999 9999999988887653 3 6799999998765443 23577888877655 4588999
Q ss_pred EEec--ccCcCCC--------------------------CH-HHHHHHHHHhcCCCCEEEEEcC
Q 023974 181 VFLY--FLPAMPF--------------------------PL-DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~--f~l~~~~--------------------------d~-~~al~el~RvLKPGGrlvIs~~ 215 (274)
|+++ |...... +. ...+....+.|||||++++-.|
T Consensus 82 ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 82 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 9988 3221110 11 2345678899999999987534
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.54 E-value=5.4e-08 Score=87.04 Aligned_cols=103 Identities=11% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCCCCCCeEE-EEcCchHHHHHHHHh----C-C-CcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCCCCCCCccE
Q 023974 112 GEIDESSKVL-VSISSEEFVDRVVES----S-P-SLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 112 ~~~~~~~rVL-vGcGTG~l~~~L~~~----~-~-~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
+...++.+|| .|||||.++..+.++ . . ..++|+|+++.|++.|+.. ..+..+.++|....+ ....||+
T Consensus 113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~ 191 (328)
T d2f8la1 113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDV 191 (328)
T ss_dssp HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEE
T ss_pred hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-ccccccc
Confidence 3566778999 999999998777542 2 2 4799999999999999864 345677788865543 4578999
Q ss_pred EEec--ccCcCCCCH---------------H-HHHHHHHHhcCCCCEEEEEcC
Q 023974 181 VFLY--FLPAMPFPL---------------D-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 181 V~~~--f~l~~~~d~---------------~-~al~el~RvLKPGGrlvIs~~ 215 (274)
|+++ |+..+..+. . ..+..+.+.|||||++++-.|
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 9999 543322111 1 247888999999999877434
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.3e-06 Score=78.57 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCC----CC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYV----PD 173 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~L----Pf 173 (274)
..+.+++.++..++++|| +-||+|.++..|++.+ .+|+|||.++.+++.|++. ..+++|+.+|+++. +.
T Consensus 200 l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 200 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 455667777888999999 9999999999998766 5999999999999999875 46789999998763 33
Q ss_pred CCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcE
Q 023974 174 KWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQI 253 (274)
Q Consensus 174 ~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~ 253 (274)
....+|+|+.. -+|--. .++++.+.+ ++|.-.++|+ .+...+.+ ++. .|.+.||++
T Consensus 279 ~~~~~d~vilD-PPR~G~--~~~~~~l~~-~~~~~ivYVS--Cnp~TlaR-----------------Dl~-~l~~~gy~l 334 (358)
T d1uwva2 279 AKNGFDKVLLD-PARAGA--AGVMQQIIK-LEPIRIVYVS--CNPATLAR-----------------DSE-ALLKAGYTI 334 (358)
T ss_dssp GTTCCSEEEEC-CCTTCC--HHHHHHHHH-HCCSEEEEEE--SCHHHHHH-----------------HHH-HHHHTTCEE
T ss_pred hhccCceEEeC-CCCccH--HHHHHHHHH-cCCCEEEEEe--CCHHHHHH-----------------HHH-HHHHCCCeE
Confidence 45789999865 444432 356777766 4787777886 22333222 333 334568887
Q ss_pred eEEEecCCe
Q 023974 254 DNFVDESGF 262 (274)
Q Consensus 254 v~~~d~~~~ 262 (274)
...+--+-|
T Consensus 335 ~~i~~~D~F 343 (358)
T d1uwva2 335 ARLAMLDMF 343 (358)
T ss_dssp EEEEEECCS
T ss_pred eEEEEEecC
Confidence 777665443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.53 E-value=4.7e-07 Score=79.16 Aligned_cols=173 Identities=11% Similarity=0.016 Sum_probs=121.0
Q ss_pred cccccccccccccccccCCccchhHHHHHHHHHHhCC------CCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcH
Q 023974 77 VVNFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAGE------IDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSL 148 (274)
Q Consensus 77 ~~~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~~------~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~ 148 (274)
...|-+...+ |.......+.......|.+.+++.+. ...+.+|+ ||+|.|--+..|+-..| .+++-||-+.
T Consensus 26 l~~y~~lL~~-wN~~~NLts~~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~ 104 (239)
T d1xdza_ 26 FELYYDMLVE-WNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN 104 (239)
T ss_dssp HHHHHHHHHH-HHHHSCCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHHHH-hcCceEEEecCCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchH
Confidence 4445555555 88766666665566668887776542 23567999 99999977777765566 8999999998
Q ss_pred HHH---HHHHHh--CCCceEEEeeccCCCCC---CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCChhH
Q 023974 149 FVL---AGIKEK--YDTVKCWQGELIYVPDK---WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHPQGREA 220 (274)
Q Consensus 149 ~ML---~~Ar~k--~~~v~~~~gDae~LPf~---~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~ 220 (274)
.-. +.+.++ ..++.++.+.+|++... .++||+|++ |-+.++...++-....+++||++++.. |+.+
T Consensus 105 KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s----RAva~l~~ll~~~~~~l~~~g~~i~~K--G~~~ 178 (239)
T d1xdza_ 105 KRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA----RAVARLSVLSELCLPLVKKNGLFVALK--AASA 178 (239)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE----ECCSCHHHHHHHHGGGEEEEEEEEEEE--CC-C
T ss_pred HHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE----hhhhCHHHHHHHHhhhcccCCEEEEEC--CCCh
Confidence 744 444444 56899999999987633 468999998 445578899999999999999999853 3322
Q ss_pred HHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEE------ecCCeEEEEEEecC
Q 023974 221 LQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFV------DESGFYLVVLKFSK 271 (274)
Q Consensus 221 l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~------d~~~~yl~v~~~~~ 271 (274)
-+++ ++.++.++..|++..... .+....++|++|-+
T Consensus 179 ~~El---------------~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 179 EEEL---------------NAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp HHHH---------------HHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred HHHH---------------HHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEEEEECC
Confidence 2222 344567788888654432 24556788888654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.52 E-value=9e-08 Score=85.11 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=77.5
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
....+|| ||-|.|..+..+.+..+ .+|+.||+.+++++.|++-+ |+++++.+|+.+ |-..++.||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4457999 99999999999987655 79999999999999999753 457899999866 334568899999
Q ss_pred eccc----C-cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFL----P-AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~----l-~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-.. . .+.. -++.++.+.+.|+|||.++..
T Consensus 154 ~D~~~p~~~~~~L~-t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLF-TKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCS-TTHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhc-cHHHHHHHHhhcCCCceEEEe
Confidence 6521 1 1111 358899999999999999984
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.47 E-value=7.3e-08 Score=87.50 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=75.4
Q ss_pred CCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC---------CCceEEEeeccC-CCCCCCCccEEE
Q 023974 115 DESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY---------DTVKCWQGELIY-VPDKWGPLDVVF 182 (274)
Q Consensus 115 ~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~---------~~v~~~~gDae~-LPf~~~sFD~V~ 182 (274)
+...+|| ||-|.|.++..+++..+ .+|+.||+.+++++.|++-+ |+++++.+|+.+ +-...+.||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4457999 99999999999988665 79999999999999999754 457889999876 334568899999
Q ss_pred eccc-CcCC---CCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFL-PAMP---FPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~-l~~~---~d~~~al~el~RvLKPGGrlvIs 213 (274)
+-.. .... ---.+.++.+.|.|+|||.++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 7522 1111 12257889999999999999984
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.9e-07 Score=82.16 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC------CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY------DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~------~~v~~~~gDae~LPf 173 (274)
+...++++++.+++.+++.|| ||+|+|.+|..|++++. +|++|+.++.|++..++++ .+++++.+|+.+..+
T Consensus 6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 345788999999999999999 99999999999999874 9999999999999999874 357899999987754
Q ss_pred CCCCccEEEec
Q 023974 174 KWGPLDVVFLY 184 (274)
Q Consensus 174 ~~~sFD~V~~~ 184 (274)
..++.|+.|
T Consensus 85 --~~~~~vV~N 93 (278)
T d1zq9a1 85 --PFFDTCVAN 93 (278)
T ss_dssp --CCCSEEEEE
T ss_pred --hhhhhhhcc
Confidence 345677776
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.43 E-value=1.1e-07 Score=83.60 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC---CCceEEEeeccCCCC
Q 023974 101 HIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY---DTVKCWQGELIYVPD 173 (274)
Q Consensus 101 ~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~---~~v~~~~gDae~LPf 173 (274)
+...++++++.+++.+++.|| ||||+|.+|..|++++ .+|++||+++.|++..+++. ++++++.+|+.++++
T Consensus 6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 345678899999999999999 9999999999999877 59999999999999999875 568999999988764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.40 E-value=1.2e-06 Score=78.89 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=78.6
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~~sFD~ 180 (274)
...+++.+|++|| +|||.|-=+..++.. .. +.++++|.++.-++..+++ ..++.+...|...++..++.||.
T Consensus 109 ~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 109 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred hhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence 3346889999999 999999766677664 33 7899999999988887754 45678888999888888899999
Q ss_pred EEe----c-cc-Cc-CC-----CCH----------HHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VFL----Y-FL-PA-MP-----FPL----------DQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~----~-f~-l~-~~-----~d~----------~~al~el~RvLKPGGrlvIs~ 214 (274)
|.+ + -+ ++ +. ..+ .+.+....+.|||||+||-++
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT 244 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST 244 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence 984 2 11 21 11 111 245567788999999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.35 E-value=1.7e-06 Score=69.70 Aligned_cols=101 Identities=9% Similarity=-0.036 Sum_probs=71.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec--------cCCC-CCC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL--------IYVP-DKW 175 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa--------e~LP-f~~ 175 (274)
..++..+++++++|| +|||+ |-++..+++....+|+++|.+++-++.|++...+..+..-+. +.+. ...
T Consensus 17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 345667899999999 99995 777777776544699999999999999988654433321110 0011 113
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- ..++....+.|||||++++.
T Consensus 97 ~g~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGN------EKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCC------hHHHHHHHHHHhcCCceEEE
Confidence 568999865332 46788888999999999983
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.31 E-value=6.4e-07 Score=74.35 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-----C--CceEEEeeccC---CCCCCCCccEEEec
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-----D--TVKCWQGELIY---VPDKWGPLDVVFLY 184 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-----~--~v~~~~gDae~---LPf~~~sFD~V~~~ 184 (274)
.+.+|| +.||||.++...+.+|...|+.||.+.+.++..++.. . ...++..|+.+ .......||+|++-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999 9999999999999998889999999999999988752 2 24556666543 33445679999986
Q ss_pred --ccCcCCCCHHHHHHHHHH--hcCCCCEEEEEcC
Q 023974 185 --FLPAMPFPLDQVFETLAN--RCSPGARVVISHP 215 (274)
Q Consensus 185 --f~l~~~~d~~~al~el~R--vLKPGGrlvIs~~ 215 (274)
|.. ...++++..+.. .|+++|.+++.++
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 332 234577777654 7999999999654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=1.5e-06 Score=74.21 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=88.1
Q ss_pred cccccccccccccccCCccchhHHHHHHHHHHhC---CCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHH--
Q 023974 79 NFEDFTEIDWSFLDSDELNFKEHIQRIDQIISAG---EIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVL-- 151 (274)
Q Consensus 79 ~f~~~~~~~Wd~~~~~~~~~~~~~~w~~~ll~~~---~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML-- 151 (274)
.|-+...+ |.......+.......|.+.+++.+ ..-++.+|| ||||.|--+..|+-..| .+++.||-+..=+
T Consensus 26 ~y~~ll~~-~N~~~NLts~~~~~~~~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~F 104 (207)
T d1jsxa_ 26 AYVNMLHK-WNKAYNLTSVRDPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRF 104 (207)
T ss_dssp HHHHHHHH-HC------------CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred HHHHHHHH-hCCceeeEECCCHHHHHHHHhcchHhhhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHH
Confidence 33344444 7655555443323334666555443 333567999 99999987777766677 8999999998844
Q ss_pred -HHHHHh--CCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 152 -AGIKEK--YDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 152 -~~Ar~k--~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+.+.++ ..+++++.+.+|++.. +.+||+|++ |-+.+....++-+...+++||++++..
T Consensus 105 L~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~s----RA~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 105 LRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVIS----RAFASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp HHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEEC----SCSSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHcCCcceeeeccchhhhcc-ccccceehh----hhhcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 444444 4589999999999863 578999998 444578899999999999999999863
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.18 E-value=1.3e-06 Score=73.26 Aligned_cols=105 Identities=10% Similarity=-0.052 Sum_probs=73.6
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEE--Eee----ccCCCCCCCCc
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCW--QGE----LIYVPDKWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~--~gD----ae~LPf~~~sF 178 (274)
.++..++++|++|| +|||+ |-++..+++. +..+|+++|.+++.++.|++.-....+. ..| +.++ .....+
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~-t~g~g~ 95 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAAL-LGEPEV 95 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHH-HSSSCE
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHH-hCCCCc
Confidence 46678999999999 99998 6666677665 3379999999999999998763321110 011 1111 134568
Q ss_pred cEEEecccC---------cCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLP---------AMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l---------~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-+.+. .......++++.+.++++|||++++.
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 999855432 12334568999999999999999984
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.3e-06 Score=65.85 Aligned_cols=100 Identities=14% Similarity=0.010 Sum_probs=69.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKW 175 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~ 175 (274)
..++..+++++++|| +|||+ |-++..+++. +..+|+++|.+++-++.|++--.+ .+..-+-+... ...
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-LVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-EEEECSSCCHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-ccccccccccccccccccccCC
Confidence 345667899999999 99998 5556666665 435899999999999999764222 22221111110 023
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- +.+++...+.+||||++++.
T Consensus 96 ~g~Dvvid~~G~------~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 96 CKPEVTIECTGA------EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred CCceEEEeccCC------chhHHHHHHHhcCCCEEEEE
Confidence 578999876443 45788888999999999993
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=7.1e-07 Score=72.45 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=67.8
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE-e-eccCCCCCCCCccEEE
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ-G-ELIYVPDKWGPLDVVF 182 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~-g-Dae~LPf~~~sFD~V~ 182 (274)
..++..++++|++|| +|+|+ |.++..+++....+|+++|.+++.++.|++---+ .++. - +.+......+.||+|+
T Consensus 18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-~~i~~~~~~~~~~~~~~~~d~vi 96 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-HYIATLEEGDWGEKYFDTFDLIV 96 (168)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-EEEEGGGTSCHHHHSCSCEEEEE
T ss_pred HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-EEeeccchHHHHHhhhcccceEE
Confidence 345567899999999 99984 7777777664226999999999999999875322 2221 1 1111112346799998
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+-.... .+....+.|||||++++.
T Consensus 97 ~~~~~~~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 97 VCASSLTDI----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp ECCSCSTTC----CTTTGGGGEEEEEEEEEC
T ss_pred EEecCCccc----hHHHHHHHhhccceEEEe
Confidence 654332211 244567789999999984
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.10 E-value=3e-06 Score=78.54 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhC----C----------CcEEEEeCcHHHHHHHHHh-------CC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVESS----P----------SLLLVVHDSLFVLAGIKEK-------YD 159 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~----~----------~~V~gVD~S~~ML~~Ar~k-------~~ 159 (274)
+..++-+++.+...++.+|+ -+||||.++..+.+.. . ..+.|+|+++.+.+.|+-. ..
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 34566778888888899999 9999999987664421 0 2599999999999999854 12
Q ss_pred CceEEEeeccCCCCCCCCccEEEec--ccCcCCCC--------------H-HHHHHHHHHhcCCCCEEEEEcC
Q 023974 160 TVKCWQGELIYVPDKWGPLDVVFLY--FLPAMPFP--------------L-DQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 160 ~v~~~~gDae~LPf~~~sFD~V~~~--f~l~~~~d--------------~-~~al~el~RvLKPGGrlvIs~~ 215 (274)
......+|...-+ ....||+|+++ |+..+... . -..+..+.+.|||||++++--|
T Consensus 228 ~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 228 RSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 3567788876544 46789999999 65543221 1 2478889999999999988534
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.08 E-value=5e-06 Score=68.14 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=70.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEee-------ccCCCCCCCC
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-------LIYVPDKWGP 177 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-------ae~LPf~~~s 177 (274)
.++..++++|++|| +|||. |.++..+++.. ..+|+++|.+++-++.|++--. ..++.-. +.++. ....
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-~~~i~~~~~~~~~~v~~~t-~g~G 96 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-TDILNYKNGHIEDQVMKLT-NGKG 96 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-SEEECGGGSCHHHHHHHHT-TTSC
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-cccccccchhHHHHHHHHh-hccC
Confidence 46778999999999 99998 88888887764 3689999999999999986432 2222211 11121 2356
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+-+.+- ...+++..+.|||||++++.
T Consensus 97 ~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 97 VDRVIMAGGG------SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp EEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred cceEEEccCC------HHHHHHHHHHHhcCCEEEEE
Confidence 9999876543 24567777889999999983
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=5.6e-06 Score=73.28 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=72.0
Q ss_pred HHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHh---C--CCceEEEeeccCC-CCCCCCccE
Q 023974 109 ISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEK---Y--DTVKCWQGELIYV-PDKWGPLDV 180 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k---~--~~v~~~~gDae~L-Pf~~~sFD~ 180 (274)
+..+...+|++|| +|+|.|-=+..+++... +.|+|+|.++.-++..+++ . .++.....|.... +...+.||.
T Consensus 95 ~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 95 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred ccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccE
Confidence 3456889999999 99999987777777665 8999999999988777754 2 2333333332221 123578999
Q ss_pred EE----ec-cc-CcCCCC----------------HHHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VF----LY-FL-PAMPFP----------------LDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~----~~-f~-l~~~~d----------------~~~al~el~RvLKPGGrlvIs~ 214 (274)
|. |+ .+ ++--++ ..+.|....+.|||||+||-++
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT 230 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 230 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 98 32 22 322222 2356677788999999998864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.3e-06 Score=71.26 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=78.2
Q ss_pred HHHHHHHhCC-CCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-------
Q 023974 104 RIDQIISAGE-IDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------- 172 (274)
Q Consensus 104 w~~~ll~~~~-~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------- 172 (274)
++.++.+..+ ++++.+|| |||++|..+..+.+. ++ +.|+|+|+-+ | +..+++.+++||..+..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~-----~~i~~~~~~~~d~~~~~~~~~~~~ 82 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M-----DPIVGVDFLQGDFRDELVMKALLE 82 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C-----CCCTTEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c-----cccCCceEeecccccchhhhhhhh
Confidence 3444544443 47889999 999999999998875 44 8999999876 2 45678899999986632
Q ss_pred -CCCCCccEEEecccCcCCCCH-----------HHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 173 -DKWGPLDVVFLYFLPAMPFPL-----------DQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 173 -f~~~sFD~V~~~f~l~~~~d~-----------~~al~el~RvLKPGGrlvIs~~~g 217 (274)
...+.||+|++-.++..-.+. ..++.-+.++|||||.+|+=-..+
T Consensus 83 ~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 83 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 235789999987665442221 245556689999999999954443
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=5.2e-06 Score=67.78 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=67.8
Q ss_pred HHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEE---ee-------ccCCCCCC
Q 023974 109 ISAGEIDESSKVL-VSISS-EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQ---GE-------LIYVPDKW 175 (274)
Q Consensus 109 l~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gD-------ae~LPf~~ 175 (274)
.+...+++|++|| +|||+ |.++..+++... .+|+++|.+++-++.|++--.+. ++. .| +.++. ..
T Consensus 21 ~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~~i~~~~-~~ 98 (182)
T d1vj0a2 21 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADL-TLNRRETSVEERRKAIMDIT-HG 98 (182)
T ss_dssp HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSE-EEETTTSCHHHHHHHHHHHT-TT
T ss_pred HHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceE-EEeccccchHHHHHHHHHhh-CC
Confidence 3456789999999 99986 777777777643 58999999999999997753221 111 11 12222 23
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+|+|+-+.+- ..+++...+.|+|||++++.
T Consensus 99 ~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGD------SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCc------hhHHHHHHHHhcCCCEEEEE
Confidence 569999865432 24677778889999999873
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=6.5e-06 Score=66.42 Aligned_cols=100 Identities=7% Similarity=0.001 Sum_probs=67.6
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-CCCCCCCccEEEe
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-VPDKWGPLDVVFL 183 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-LPf~~~sFD~V~~ 183 (274)
..++..++++|++|| +|||+ |.++..+++....+++++|.+++=++.+++--.+. ++.-.-+. .......+|+|+-
T Consensus 21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~-~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE-VVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE-EEETTCHHHHHTTTTCEEEEEE
T ss_pred HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE-EEECchhhHHHHhcCCCceeee
Confidence 445678999999999 99987 77777777754358889999999888887653332 22211111 1123367999986
Q ss_pred cccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 184 YFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 184 ~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
..+- ...+....+.|+|||++++.
T Consensus 100 ~~g~------~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 100 TVAA------PHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CCSS------CCCHHHHHTTEEEEEEEEEC
T ss_pred eeec------chhHHHHHHHHhcCCEEEEe
Confidence 6432 12355666789999999984
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.01 E-value=6.5e-06 Score=67.02 Aligned_cols=101 Identities=8% Similarity=-0.030 Sum_probs=70.9
Q ss_pred HHHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCC
Q 023974 106 DQIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGP 177 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~s 177 (274)
..+++..++++|++|| +|||+ |-++..+++. +...|+++|.+++=++.|++- ....++.-+-+++- ..++.
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~~~i~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GATHVINSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCSEEEETTTSCHHHHHHHHTTSC
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCeEEEeCCCcCHHHHHHHHcCCC
Confidence 3456778999999999 99987 4555566654 446788999999999999864 32333322222111 23468
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||+|+-+-+- ...+++..+.+||||++++.
T Consensus 97 ~D~vid~~G~------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 97 VNFALESTGS------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEEECSCC------HHHHHHHHHTEEEEEEEEEC
T ss_pred CcEEEEcCCc------HHHHHHHHhcccCceEEEEE
Confidence 9999965432 46788889999999999883
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.97 E-value=1.2e-05 Score=64.46 Aligned_cols=98 Identities=8% Similarity=-0.045 Sum_probs=64.6
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccE
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDV 180 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~ 180 (274)
.++..++++|++|| +|||+ |-++..+++....+|+++|.+++-++.+++--. ..++..+-++.. ...+.+|+
T Consensus 19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-SLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-cccccccchhHHHHHHHhhcCCccc
Confidence 45567899999999 99987 666666666533699999999999999987432 223321111111 11233344
Q ss_pred EEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 181 VFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 181 V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|++... ...+....+.|+|||++++.
T Consensus 98 i~~~~~-------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 98 LVTAVS-------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EECCSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred cccccc-------chHHHHHHHHhcCCcEEEEE
Confidence 443221 35688888999999999983
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.93 E-value=7.2e-06 Score=70.96 Aligned_cols=111 Identities=5% Similarity=0.013 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHH----hCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-
Q 023974 100 EHIQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVE----SSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP- 172 (274)
Q Consensus 100 ~~~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~----~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP- 172 (274)
.+.....+++...+ | .+|| +|+++|.-+..++. .++ ++|+|+|+.+.+...+....+++++++||..+..
T Consensus 67 ~d~~~~~eli~~~K--P-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~ 143 (232)
T d2bm8a1 67 DTQAVYHDMLWELR--P-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTT 143 (232)
T ss_dssp HHHHHHHHHHHHHC--C-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGG
T ss_pred HHHHHHHHHHHHhC--C-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHH
Confidence 44445567776664 3 5899 99999976554432 244 8999999988777666667788999999976543
Q ss_pred ---CCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 173 ---DKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 173 ---f~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
.....+|.|++=.. |.- +....--+++..|||||.++|-+.
T Consensus 144 ~~~l~~~~~dlIfID~~-H~~-~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 144 FEHLREMAHPLIFIDNA-HAN-TFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGSSSCSSEEEEESS-CSS-HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred HHHHHhcCCCEEEEcCC-cch-HHHHHHHHHhcccCcCCEEEEEcC
Confidence 24567899887644 332 222121146689999999999653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.85 E-value=5.5e-05 Score=60.99 Aligned_cols=128 Identities=9% Similarity=-0.001 Sum_probs=77.8
Q ss_pred CCCCCCeEE-EEcCc-hHHHHHHHH-hCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccEEEec
Q 023974 113 EIDESSKVL-VSISS-EEFVDRVVE-SSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDVVFLY 184 (274)
Q Consensus 113 ~~~~~~rVL-vGcGT-G~l~~~L~~-~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~V~~~ 184 (274)
.++++++|| +|+|+ |-++..+++ .+...|+++|.+++=++.+++-.. ..++..+-+... .....+|+|+-+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-~~~i~~~~~~~~~~~~~~~~~g~d~vid~ 107 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-DHVVDARRDPVKQVMELTRGRGVNVAMDF 107 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-SEEEETTSCHHHHHHHHTTTCCEEEEEES
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-ceeecCcccHHHHHHHhhCCCCceEEEEe
Confidence 478999999 99988 444555555 355789999999999998887533 233322211110 123569999876
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcCCC--hhHHHHHHhhCcccccccCCCHHHHHHHHH
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVISHPQG--REALQKQRKQFPDVIVSDLPDQMTLQKAAG 247 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvIs~~~g--r~~l~~~~~~~~~~si~~fps~~eL~~ll~ 247 (274)
.+- ...++...+.|+|||++++.-..+ .-.+..+...-..+.-....+.+++.++++
T Consensus 108 ~g~------~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~~l~ 166 (172)
T d1h2ba2 108 VGS------QATVDYTPYLLGRMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGNYVELHELVT 166 (172)
T ss_dssp SCC------HHHHHHGGGGEEEEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred cCc------chHHHHHHHHHhCCCEEEEEeCcccccCCHHHHHhCCcEEEEEEecCHHHHHHHHH
Confidence 543 457888899999999999832111 111122222212222234556777776654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.85 E-value=3.3e-05 Score=61.89 Aligned_cols=100 Identities=9% Similarity=0.075 Sum_probs=68.5
Q ss_pred HHHHhCCCCCCCeEE-EEc-C-chHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCC
Q 023974 107 QIISAGEIDESSKVL-VSI-S-SEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGc-G-TG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~ 176 (274)
..++..+++++++|| +|| | .|.++..+++. +...|+++|.+++=++.+++--.. .++..+-++.. -...
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESK 96 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcc
Confidence 345678999999999 997 4 45666665554 447999999999999998874322 22222211111 1245
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
.||+|+-..+- ..+++...+.|+|||++++.
T Consensus 97 ~~d~vid~~g~------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 97 GVDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp CEEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred cchhhhccccc------chHHHhhhhhcccCCEEEEe
Confidence 69999875432 46778888999999999984
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.80 E-value=8.2e-05 Score=58.96 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=63.3
Q ss_pred HHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEE---eec-cCCCCCCCCccEE
Q 023974 108 IISAGEIDESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GEL-IYVPDKWGPLDVV 181 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gDa-e~LPf~~~sFD~V 181 (274)
.+...+++++++|| .|||+ |-++..+++....+|+++|.+++=++.+++--.+ .++. .|. +.+......+|.+
T Consensus 19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~-~~~~~~~~~~~~~~~~~~~~~~~~ 97 (168)
T d1rjwa2 19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD-LVVNPLKEDAAKFMKEKVGGVHAA 97 (168)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS-EEECTTTSCHHHHHHHHHSSEEEE
T ss_pred HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc-eecccccchhhhhcccccCCCceE
Confidence 45567899999999 99988 5555556555336899999999999999774222 1111 111 0111111234444
Q ss_pred EecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 182 FLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 182 ~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+...+ . ...+....+.|+|||++++.
T Consensus 98 v~~~~-----~-~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 98 VVTAV-----S-KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EESSC-----C-HHHHHHHHHHEEEEEEEEEC
T ss_pred EeecC-----C-HHHHHHHHHHhccCCceEec
Confidence 43322 1 36788888999999999984
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.79 E-value=4.8e-05 Score=62.19 Aligned_cols=100 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHhC-CCcEEEEeCcHHHHHHHHHhCCCceEEEeeccC-----C--CCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVESS-PSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIY-----V--PDKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~~-~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~-----L--Pf~~~ 176 (274)
.+++..++++|++|| +|||+ |-++..+++.. ...|+++|.+++=++.|++--.. ..+...-.+ + -...+
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-DCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-EEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-cccCCccchhhhhhhHhhhhcC
Confidence 345678899999999 99999 77777777764 36899999999999888874322 222111000 0 01246
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvIs 213 (274)
.+|+|+-+.+- ..++.+..+.|+|| |++++.
T Consensus 98 G~d~vie~~G~------~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 98 GVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp CBSEEEESSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCcEEEEeccc------chHHHHHHHHhhcCCeEEEec
Confidence 79999865433 56899999999997 999983
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=6.3e-05 Score=66.58 Aligned_cols=73 Identities=8% Similarity=0.041 Sum_probs=58.4
Q ss_pred hCCCCCCCeEE-EEcCchHHHHHHHHh-CC-CcEEEEeCcHHHHHHHHHh-----CCCceEEEeeccCCCCCC---CCcc
Q 023974 111 AGEIDESSKVL-VSISSEEFVDRVVES-SP-SLLLVVHDSLFVLAGIKEK-----YDTVKCWQGELIYVPDKW---GPLD 179 (274)
Q Consensus 111 ~~~~~~~~rVL-vGcGTG~l~~~L~~~-~~-~~V~gVD~S~~ML~~Ar~k-----~~~v~~~~gDae~LPf~~---~sFD 179 (274)
.+...+|++|| +|||.|.=+..++.. ++ +.|+|+|.++.-++.+++. ..++.+...|+..++..+ +.||
T Consensus 89 ~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 89 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred ccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceee
Confidence 35788999999 999999877777664 44 7999999999988887764 457888899998876443 6799
Q ss_pred EEEe
Q 023974 180 VVFL 183 (274)
Q Consensus 180 ~V~~ 183 (274)
.|++
T Consensus 169 ~VL~ 172 (293)
T d2b9ea1 169 YILL 172 (293)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9984
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=2.4e-05 Score=74.41 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----CC---------------CcEEEEeCcHHHHHHHHHhC----
Q 023974 103 QRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES----SP---------------SLLLVVHDSLFVLAGIKEKY---- 158 (274)
Q Consensus 103 ~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----~~---------------~~V~gVD~S~~ML~~Ar~k~---- 158 (274)
..++-+++.+...++.+|+ -+||||.|+....+. .. ..+.|+|+.+.+.+.|+-..
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 4567778888888999999 999999997655332 10 25899999999999988531
Q ss_pred -C-----CceEEEeeccCCC-CCCCCccEEEec--ccCcCCCC-----------HH-HHHHHHHHhcCCCCEEEEEcC
Q 023974 159 -D-----TVKCWQGELIYVP-DKWGPLDVVFLY--FLPAMPFP-----------LD-QVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 159 -~-----~v~~~~gDae~LP-f~~~sFD~V~~~--f~l~~~~d-----------~~-~al~el~RvLKPGGrlvIs~~ 215 (274)
. .-.+..++...-+ .....||+|+++ |+-.+..+ .+ ..+..+.+.|||||+++|--|
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 1 1133444433221 234679999999 65444322 22 478889999999999988544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.51 E-value=0.00036 Score=56.56 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=65.6
Q ss_pred HHHHhCCCCCCCeEE-EEcCch-HHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEE---ee--ccC--CCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSE-EFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQ---GE--LIY--VPDKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG-~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~---gD--ae~--LPf~~~ 176 (274)
.+++..++++|++|| +|||.. -++..+++. +..+|+++|.+++-++.|++- ....++. .| .++ .-..++
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l-Ga~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL-GATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT-TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc-CCcEEEcCCCchhHHHHHHHHhcCC
Confidence 456678899999999 999984 444445553 547899999999999999764 3222222 11 000 011235
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCC-CCEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSP-GARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKP-GGrlvI 212 (274)
-+|+|+-..+. ..++.+..+.+++ +|++++
T Consensus 97 G~d~vid~~g~------~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 97 GVDYAVECAGR------IETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp CBSEEEECSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred CCcEEEEcCCC------chHHHHHHHHHHHhcCceEE
Confidence 79999865432 4567777776765 599988
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0001 Score=59.27 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=67.4
Q ss_pred HHHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC--------CCC
Q 023974 107 QIISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP--------DKW 175 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP--------f~~ 175 (274)
.+.+..++++|++|| .|+ |.|.++..+++....+|++++-|++-++.+++ ++.-.++ |-.+.. ...
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~-~Ga~~vi--~~~~~~~~~~i~~~t~~ 95 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ-NGAHEVF--NHREVNYIDKIKKYVGE 95 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEE--ETTSTTHHHHHHHHHCT
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc-cCccccc--ccccccHHHHhhhhhcc
Confidence 345567899999999 886 34677777776544699999999998888876 3322222 211111 135
Q ss_pred CCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+.+|+|+.+.+ ...+.+..+.|+|||+++..
T Consensus 96 ~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 96 KGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence 67999997643 24678888899999999983
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.44 E-value=0.00028 Score=57.43 Aligned_cols=101 Identities=10% Similarity=-0.040 Sum_probs=64.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCch-HHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEE--Eeec--cCC--CCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSE-EFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCW--QGEL--IYV--PDKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG-~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~--~gDa--e~L--Pf~~~s 177 (274)
.+++..++++|+.|| +|||.. -++..+++. +..+|+++|.+++-++.|++--.+..+- ..|. +.+ -.....
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 355677899999999 999984 444455554 3379999999999999999875432221 1111 000 013457
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhc-CCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRC-SPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvL-KPGGrlvIs 213 (274)
+|+|+-..+- ..++.+....+ +++|++++.
T Consensus 100 ~d~vi~~~g~------~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 100 VGYTFEVIGH------LETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp CCEEEECSCC------HHHHHHHHTTSCTTTCEEEEC
T ss_pred ceEEEEeCCc------hHHHHHHHHHhhcCCeEEEEE
Confidence 9988865432 34455544445 555999883
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=8.2e-05 Score=60.19 Aligned_cols=97 Identities=18% Similarity=0.072 Sum_probs=63.2
Q ss_pred HHHhCCCCCCCeEE-EEc-Cc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEec
Q 023974 108 IISAGEIDESSKVL-VSI-SS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLY 184 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGc-GT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~ 184 (274)
.++..++++|++|| .|. |+ |.++..+++....+|++++-+++=++.+++--.+.-+--.|...---....+|+|+-.
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~ 98 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEV 98 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEEC
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccc
Confidence 45667899999999 673 44 5667777776446999999999888888764322211111211111124679999864
Q ss_pred ccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 185 FLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 185 f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+ .+ +....+.|+|||+++.
T Consensus 99 ~G----~~----~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 99 RG----KE----VEESLGLLAHGGRLVY 118 (171)
T ss_dssp SC----TT----HHHHHTTEEEEEEEEE
T ss_pred cc----hh----HHHHHHHHhcCCcEEE
Confidence 33 12 4566778999999987
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.23 E-value=0.00027 Score=64.74 Aligned_cols=95 Identities=11% Similarity=-0.028 Sum_probs=72.8
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCC--------------------CceEEEeeccCCCC
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYD--------------------TVKCWQGELIYVPD 173 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~--------------------~v~~~~gDae~LPf 173 (274)
.+.+|| +.||||..+.+.+...+ .+|+++|+|++-++.++++.. .+...+.|+..+..
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 567999 99999999887666544 799999999999999997631 13455666655443
Q ss_pred -CCCCccEEEec-ccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 174 -KWGPLDVVFLY-FLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 174 -~~~sFD~V~~~-f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
..+.||+|.+- |+ .+...+....|.+|.||.|+|+..
T Consensus 125 ~~~~~fDvIDiDPfG-----s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDPFG-----SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECCSS-----CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCCCC-----CcHHHHHHHHHHhccCCEEEEEec
Confidence 35679999876 43 456788888889999999999744
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.12 E-value=0.00044 Score=55.38 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=66.7
Q ss_pred HHHHhCCCCCCCeEE-EE--cCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCC
Q 023974 107 QIISAGEIDESSKVL-VS--ISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vG--cGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~s 177 (274)
.+.+...+++|++|| .| .|.|.++..+++....+|++++-+++=++.+++...+. .+.-.-+++. .....
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~-vi~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTCSTHHHHHHHHTTTCC
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccc-cccCCccCHHHHHHHHhCCCC
Confidence 345666889999999 45 33477777777653368999988988888888654332 2211111111 12467
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
||+|+.+.+ .+.++++.+.|||+|+++..
T Consensus 95 ~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 95 VDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred EEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 999997654 24677888999999999984
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.08 E-value=0.00044 Score=61.75 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCC------CCCeEE-EEcCchHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCC--CceEEEeeccC
Q 023974 102 IQRIDQIISAGEID------ESSKVL-VSISSEEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYD--TVKCWQGELIY 170 (274)
Q Consensus 102 ~~w~~~ll~~~~~~------~~~rVL-vGcGTG~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~--~v~~~~gDae~ 170 (274)
...++++++.+++. ++.+|| ||+|+|.++..|.+. ++.+|++|+..+.+.+..++++. +++++.+|+..
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 34677888877654 467899 999999999999887 45789999999999999998864 58888999854
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.07 E-value=0.00071 Score=59.06 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=75.4
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHH--HHHHHHHhCC-C-ceEE-EeeccCCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLF--VLAGIKEKYD-T-VKCW-QGELIYVPDKWG 176 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~--ML~~Ar~k~~-~-v~~~-~gDae~LPf~~~ 176 (274)
++.++.+...+.++.+|+ +|||.|--+.+++.+.+ ..|.|.|+--. |.-...+.+. + +++. .-|+..+| .+
T Consensus 54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~--~~ 131 (257)
T d2p41a1 54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PE 131 (257)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CC
T ss_pred HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcC--CC
Confidence 566677777888999999 99999999999988765 67777777322 1000000011 1 2443 24444453 58
Q ss_pred CccEEEecccCcCCCCHH-------HHHHHHHHhcCCCCEEEEE--cCCChhHHHH
Q 023974 177 PLDVVFLYFLPAMPFPLD-------QVFETLANRCSPGARVVIS--HPQGREALQK 223 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~-------~al~el~RvLKPGGrlvIs--~~~gr~~l~~ 223 (274)
..|.|+|-.+.. ..+++ ++++-+.+.|+|||-|++- .|+....++.
T Consensus 132 ~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~ 186 (257)
T d2p41a1 132 RCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEK 186 (257)
T ss_dssp CCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHH
T ss_pred cCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHH
Confidence 899999987654 22221 4556667899999999983 4566555554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.02 E-value=0.0016 Score=51.93 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=64.5
Q ss_pred HHHHhCCCCCCCeEE-EEcCchH-HHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC------CCCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEE-FVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV------PDKWGP 177 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~-l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L------Pf~~~s 177 (274)
.+++..++++|++|| +|+|.+- ++..+++. +..+|+++|.+++-++.+++.-....+.-.+.++. -...+.
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence 445678899999999 9997643 34444444 34799999999999999987643211111111110 012357
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCC-CEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPG-ARVVI 212 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPG-GrlvI 212 (274)
+|+|+-..+. ...++.....+++| |++++
T Consensus 99 ~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 99 VDFSFEVIGR------LDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp BSEEEECSCC------HHHHHHHHHHBCTTTCEEEE
T ss_pred CCEEEecCCc------hhHHHHHHHHHhcCCcceEE
Confidence 9999976554 34566667778887 56665
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00059 Score=54.50 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=66.1
Q ss_pred HHHhCCCCCCCeEE-EEcC--chHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCc
Q 023974 108 IISAGEIDESSKVL-VSIS--SEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPL 178 (274)
Q Consensus 108 ll~~~~~~~~~rVL-vGcG--TG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sF 178 (274)
+.+..++++|++|| .|+| .|.++..+++....+|+++|.|++-++.+++.-.+ ..+.-+-+++. -....+
T Consensus 20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~-~vi~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-QVINYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTCCE
T ss_pred HHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe-EEEECCCCCHHHHHHHHhCCCCe
Confidence 34556889999999 7555 46777777776336999999999999998865322 22221111111 135679
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
|+|+-+-+- +.+....+.|+|+|++++
T Consensus 99 d~v~d~~g~-------~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 99 RVVYDSVGR-------DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEEECSCG-------GGHHHHHHTEEEEEEEEE
T ss_pred EEEEeCccH-------HHHHHHHHHHhcCCeeee
Confidence 998865332 246777888999999987
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.95 E-value=0.0016 Score=51.52 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHHHhCCCCCCCeEE-EEcCc-hHHHHHHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEee-----ccC-C-CCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISS-EEFVDRVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-----LIY-V-PDKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT-G~l~~~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-----ae~-L-Pf~~~ 176 (274)
.+++..++++|++|| .|||. |-++..+++. +...|+++|.+++-++.|++--. -.++.-+ +++ + -...+
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-TECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-SEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-cEEEeCCchhhHHHHHHHHHcCC
Confidence 345678899999999 88874 3445555554 44689999999999988886432 2222111 000 0 01235
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+|+|+-+.+- ..+++.....+++||++++
T Consensus 98 g~D~vid~~G~------~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 98 GVDYSFECIGN------VKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp CBSEEEECSCC------HHHHHHHHHTBCTTTCEEE
T ss_pred CCcEeeecCCC------HHHHHHHHHhhcCCceeEE
Confidence 79999976442 4678888899999988765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.68 E-value=0.0022 Score=51.61 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=68.7
Q ss_pred HHHHhCCCCCCCeEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeec---cCC--CCCCCCc
Q 023974 107 QIISAGEIDESSKVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGEL---IYV--PDKWGPL 178 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDa---e~L--Pf~~~sF 178 (274)
.+.+..++++|++|| .|+|. |..+..|++....+|++++-+++-++.+++.-.+.-+...|- +.+ -.....+
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGY 99 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCC
Confidence 455677899999999 66654 566777777654799999999998888877543322211111 110 1134569
Q ss_pred cEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 179 DVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 179 D~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
|+|+-.-+ .+.+++..+.|+|||++++.
T Consensus 100 d~v~D~vG-------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 100 DCYFDNVG-------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred ceeEEecC-------chhhhhhhhhccCCCeEEee
Confidence 99985432 35788999999999999983
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.62 E-value=0.00061 Score=56.05 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=70.5
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
+..+|+ ||+|. |..+.+.+.+-.+.|+++|.+++-+++.+..++ ++++...+-+.+...-...|+|+.+..+---.-
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a 110 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA 110 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence 347999 99998 655666555533799999999999999888765 467766666555544467899998854333334
Q ss_pred HHHHHHHHHHhcCCCCEEE
Q 023974 193 LDQVFETLANRCSPGARVV 211 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlv 211 (274)
|.-+-+||.+..|||..++
T Consensus 111 P~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 111 PILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCBCHHHHTTSCTTCEEE
T ss_pred CeeecHHHHhhcCCCcEEE
Confidence 5566789999999988775
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.51 E-value=0.0054 Score=48.49 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=62.9
Q ss_pred HHHHhCCCCCCCeEE-EEcCchHHHH-HHHHh-CCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCC-------CCCCC
Q 023974 107 QIISAGEIDESSKVL-VSISSEEFVD-RVVES-SPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYV-------PDKWG 176 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGTG~l~~-~L~~~-~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~L-------Pf~~~ 176 (274)
.+++..+++++++|| +|||.+-+.. .+++. +...|+++|.+++=++.|++-- .-.++.-.-++- .....
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G-Ad~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG-ATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT-CCEEECGGGCSSCHHHHHHHHHTS
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC-CcEEEcCCCcchhHHHHHHhhccC
Confidence 445667899999999 9999954433 33443 4478999999999999988743 222322111110 11235
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+|+|+-+.+- ..++......+++||.+++
T Consensus 98 G~d~vid~~G~------~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 98 GVDFSLECVGN------VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp CBSEEEECSCC------HHHHHHHHHTBCTTTCEEE
T ss_pred CcceeeeecCC------HHHHHHHHHHhhCCCccee
Confidence 69999866543 4566777777777654444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.40 E-value=0.0064 Score=47.77 Aligned_cols=88 Identities=14% Similarity=-0.031 Sum_probs=60.3
Q ss_pred eEE-EEcCc--hHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023974 119 KVL-VSISS--EEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
+|+ ||||- |.++..|.+.+. .+|+|.|.+++.++.|++..- +....-+... ..+...|+|+.+--+ ....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~dlIila~p~---~~~~ 76 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-IDEGTTSIAK--VEDFSPDFVMLSSPV---RTFR 76 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-CSEEESCGGG--GGGTCCSEEEECSCH---HHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-chhhhhhhhh--hhccccccccccCCc---hhhh
Confidence 688 99987 456667776665 689999999999999988643 2111222222 233468999876433 2356
Q ss_pred HHHHHHHHhcCCCCEEEE
Q 023974 195 QVFETLANRCSPGARVVI 212 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvI 212 (274)
+++.++...++++-.++-
T Consensus 77 ~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 77 EIAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred hhhhhhhccccccccccc
Confidence 888999999998765543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.09 E-value=0.032 Score=42.17 Aligned_cols=88 Identities=7% Similarity=-0.008 Sum_probs=57.6
Q ss_pred eEE-EEcCchHHHHHHH----HhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcC
Q 023974 119 KVL-VSISSEEFVDRVV----ESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAM 189 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~----~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~ 189 (274)
+|+ +|+|. ++..++ +.+ ..|+.||.+++.++.+++++ +..++.||+.+.. ..-+..|++++... .
T Consensus 2 ~IvI~G~G~--~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~-~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~--~ 75 (132)
T d1lssa_ 2 YIIIAGIGR--VGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLEDAGIEDADMYIAVTG--K 75 (132)
T ss_dssp EEEEECCSH--HHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHHHTTTTTCSEEEECCS--C
T ss_pred EEEEECCCH--HHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh-hhhhccCcccchhhhhhcChhhhhhhcccCC--c
Confidence 577 77754 444443 334 58999999999999998876 5788999987733 12356888886421 1
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 190 PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 190 ~~d~~~al~el~RvLKPGGrlvIs 213 (274)
++.......+.|.+.+.-.++..
T Consensus 76 -d~~N~~~~~~~k~~~~~~iI~~~ 98 (132)
T d1lssa_ 76 -EEVNLMSSLLAKSYGINKTIARI 98 (132)
T ss_dssp -HHHHHHHHHHHHHTTCCCEEEEC
T ss_pred -HHHHHHHHHHHHHcCCceEEEEe
Confidence 12233445567788887554443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0073 Score=49.09 Aligned_cols=103 Identities=11% Similarity=-0.025 Sum_probs=66.8
Q ss_pred HHHHHHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceE-EEe-eccC-CCCCCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKC-WQG-ELIY-VPDKWGP 177 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~-~~g-Dae~-LPf~~~s 177 (274)
.+..+.+.....+|++|| -|. |-|.++..|++....+|++..-|++-++.+++--.+.-+ ... +.+. .....+.
T Consensus 19 a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 19 SIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQR 98 (176)
T ss_dssp HHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCC
T ss_pred HHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccC
Confidence 345677778888999999 554 335677777766447999999998888888864222111 011 1111 1235678
Q ss_pred ccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+|+=..+- .-+.+..++|+||||+++.
T Consensus 99 vD~vid~vgg-------~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 99 WAAAVDPVGG-------RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp EEEEEECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred cCEEEEcCCc-------hhHHHHHHHhCCCceEEEe
Confidence 9999865332 2367777789999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.91 E-value=0.035 Score=43.27 Aligned_cols=85 Identities=19% Similarity=0.142 Sum_probs=58.4
Q ss_pred eEE-EEcCc--hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023974 119 KVL-VSISS--EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 119 rVL-vGcGT--G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+|. ||+|. +.++..|.+.+ .+|++.|.+++.++.|++... +....-+.+.+ ...|+|+.+- + ....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~----~~~DiIilav-p--~~~~~~ 72 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVERQL-VDEAGQDLSLL----QTAKIIFLCT-P--IQLILP 72 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTS-CSEEESCGGGG----TTCSEEEECS-C--HHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHhhc-cceeeeecccc----cccccccccC-c--Hhhhhh
Confidence 678 98885 45666776666 499999999999999887542 21222233333 4679998753 2 234568
Q ss_pred HHHHHHHhcCCCCEEEE
Q 023974 196 VFETLANRCSPGARVVI 212 (274)
Q Consensus 196 al~el~RvLKPGGrlvI 212 (274)
+++++...|+|+-.++-
T Consensus 73 vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhcccccceee
Confidence 99999988888776644
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.018 Score=46.29 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=64.4
Q ss_pred HHHhCCCCCC--CeEE-EE--cCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC-----CCCC
Q 023974 108 IISAGEIDES--SKVL-VS--ISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP-----DKWG 176 (274)
Q Consensus 108 ll~~~~~~~~--~rVL-vG--cGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~ 176 (274)
+.+..++++| ++|| -| -|.|.++..+++... ..|++++-+++-.....+....-..+.-.-+++. ..+.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~ 99 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPG 99 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTT
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhcc
Confidence 4455677776 7799 44 455899999988643 5788889888877766655543222221111111 1235
Q ss_pred CccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
.+|+|+=+.+ .+.+....+.|+|||++++
T Consensus 100 GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 100 GVDVYFDNVG-------GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp CEEEEEESSC-------HHHHHHHHTTEEEEEEEEE
T ss_pred CceEEEecCC-------chhHHHHhhhccccccEEE
Confidence 6999985532 3568889999999999987
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.42 E-value=0.0079 Score=51.97 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.9
Q ss_pred HHHHhCCCCCCC--eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHH---HhC-----------CCceEEEeecc
Q 023974 107 QIISAGEIDESS--KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIK---EKY-----------DTVKCWQGELI 169 (274)
Q Consensus 107 ~ll~~~~~~~~~--rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar---~k~-----------~~v~~~~gDae 169 (274)
.+.++++++.+. +|| +-||.|.-+..++..+ ++|++++-++.+-+..+ ++. .+++++.+|+.
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~ 155 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence 456667776654 899 9999999999999888 59999999997543333 321 14689999976
Q ss_pred C-CCCCCCCccEEEec
Q 023974 170 Y-VPDKWGPLDVVFLY 184 (274)
Q Consensus 170 ~-LPf~~~sFD~V~~~ 184 (274)
+ |.-..++||+|++=
T Consensus 156 ~~L~~~~~~~DvIYlD 171 (250)
T d2oyra1 156 TALTDITPRPQVVYLD 171 (250)
T ss_dssp HHSTTCSSCCSEEEEC
T ss_pred HHHhccCCCCCEEEEC
Confidence 6 55456789999975
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.23 E-value=0.0078 Score=50.23 Aligned_cols=83 Identities=6% Similarity=-0.115 Sum_probs=51.9
Q ss_pred eEEEeeccCC--CCCCCCccEEEec--ccCcC---------CCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhhC
Q 023974 162 KCWQGELIYV--PDKWGPLDVVFLY--FLPAM---------PFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQF 228 (274)
Q Consensus 162 ~~~~gDae~L--Pf~~~sFD~V~~~--f~l~~---------~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~~ 228 (274)
.|++||..++ -++++|+|+|+.. |.... .......++|+.|+|||||.+++.......
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~--------- 76 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQ--------- 76 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCC---------
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCcccc---------
Confidence 4678888763 3568999999976 43211 112467889999999999999995321100
Q ss_pred cccccccCCCHHHHHHHHHhCCCcEeE
Q 023974 229 PDVIVSDLPDQMTLQKAAGNHCFQIDN 255 (274)
Q Consensus 229 ~~~si~~fps~~eL~~ll~~aGF~~v~ 255 (274)
. ..........+..+++..||....
T Consensus 77 -~-~~~~~~~~~~~~~~~~~~~~~~~~ 101 (279)
T d1eg2a_ 77 -G-EAGSGDLISIISHMRQNSKMLLAN 101 (279)
T ss_dssp -C-CTTBCCHHHHHHHHHHHCCCEEEE
T ss_pred -c-cccccchhhHHHHHHhccCceeee
Confidence 0 001112235566778888886544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.18 E-value=0.0094 Score=49.31 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=61.1
Q ss_pred CCCeEE-EEcCc-hHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc-eE----------EEeeccCCCCC--------
Q 023974 116 ESSKVL-VSISS-EEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV-KC----------WQGELIYVPDK-------- 174 (274)
Q Consensus 116 ~~~rVL-vGcGT-G~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v-~~----------~~gDae~LPf~-------- 174 (274)
+..+|| ||+|+ |..+...+..-.+.|+++|.+++-+++.+..++.. +. ..+.+.++..+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 346999 99999 55555555543369999999999999999876532 11 01122222110
Q ss_pred ----CCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEE
Q 023974 175 ----WGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVV 211 (274)
Q Consensus 175 ----~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlv 211 (274)
-...|+|+.+..+---.-|.-+-++|.+.+|||..+|
T Consensus 108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 1358999987544333355567789999999998775
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.90 E-value=0.044 Score=43.92 Aligned_cols=98 Identities=8% Similarity=-0.017 Sum_probs=58.2
Q ss_pred HHHHhCCCCCCCeEE-EEcCc---hHHHHHHHHhCCCcEEEE----eCcHHHHHHHHHhCCCceEEEe---eccCC----
Q 023974 107 QIISAGEIDESSKVL-VSISS---EEFVDRVVESSPSLLLVV----HDSLFVLAGIKEKYDTVKCWQG---ELIYV---- 171 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vGcGT---G~l~~~L~~~~~~~V~gV----D~S~~ML~~Ar~k~~~v~~~~g---Dae~L---- 171 (274)
.+.+..++++|++|| +..|+ |..+..+++....+|+++ |-+++.++.+++.-.+. .+.- |..++
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v 97 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTI 97 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHH
Confidence 344557899999999 84443 556666666533588877 44455555665543222 2221 11111
Q ss_pred ----CCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEE
Q 023974 172 ----PDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 172 ----Pf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvI 212 (274)
......+|+|+=+.+ ...+..+.+.|+|||++++
T Consensus 98 ~~~~~~~g~~vdvv~D~vg-------~~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 98 KEWIKQSGGEAKLALNCVG-------GKSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHHTCCEEEEEESSC-------HHHHHHHHHTSCTTCEEEE
T ss_pred HHHHhhccCCceEEEECCC-------cchhhhhhhhhcCCcEEEE
Confidence 012356899884321 3456778899999999987
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=94.49 E-value=0.058 Score=42.99 Aligned_cols=101 Identities=9% Similarity=-0.050 Sum_probs=65.5
Q ss_pred HHHHHhCCCCCCCeEE-EEc--CchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee--ccC-CCCCCCCcc
Q 023974 106 DQIISAGEIDESSKVL-VSI--SSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE--LIY-VPDKWGPLD 179 (274)
Q Consensus 106 ~~ll~~~~~~~~~rVL-vGc--GTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD--ae~-LPf~~~sFD 179 (274)
..+.+....+++++|| -|. |-|.++..|++....+|+++.-|++-.+.+++--.+.-+-.-| .+. .....+.+|
T Consensus 13 ~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd 92 (167)
T d1tt7a2 13 HRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQ 92 (167)
T ss_dssp HHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEE
T ss_pred HHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCce
Confidence 4455555666778899 443 2256666777653369999999988888887754432211111 111 223457899
Q ss_pred EEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 180 VVFLYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 180 ~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
+|+-..+ ...+.+..+.|+|||++++.
T Consensus 93 ~vid~vg-------g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 93 GAVDPVG-------GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp EEEESCC-------THHHHHHHTTEEEEEEEEEC
T ss_pred EEEecCc-------HHHHHHHHHHhccCceEEEe
Confidence 9885532 24678889999999999883
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.44 E-value=0.031 Score=50.51 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=59.7
Q ss_pred EEeeccCCCCCCCCccEEEecccCcCCCC---------------------------------HHHHHHHHHHhcCCCCEE
Q 023974 164 WQGELIYVPDKWGPLDVVFLYFLPAMPFP---------------------------------LDQVFETLANRCSPGARV 210 (274)
Q Consensus 164 ~~gDae~LPf~~~sFD~V~~~f~l~~~~d---------------------------------~~~al~el~RvLKPGGrl 210 (274)
+-|....--|+++|.|++++++.+||... ....|+-=++-|+|||++
T Consensus 126 vpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~m 205 (359)
T d1m6ex_ 126 VPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp EESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred cCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 34555555588999999999999999642 223444446779999999
Q ss_pred EEEcC-------C---ChhHHHHHHhhCcc---------------cccccCCCHHHHHHHHHhCC-CcEeEE
Q 023974 211 VISHP-------Q---GREALQKQRKQFPD---------------VIVSDLPDQMTLQKAAGNHC-FQIDNF 256 (274)
Q Consensus 211 vIs~~-------~---gr~~l~~~~~~~~~---------------~si~~fps~~eL~~ll~~aG-F~~v~~ 256 (274)
+++-. . +...++.+...|.+ .....+|+.+|++..+++.| |++...
T Consensus 206 vl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 206 VLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 99421 0 11112222222211 13467899999999999988 555544
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.13 E-value=0.21 Score=38.34 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred eEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHHH
Q 023974 119 KVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLDQ 195 (274)
Q Consensus 119 rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~~ 195 (274)
+|. ||||. | .++..|.+.++.+|++.|.+++-++..++++. +.. ..|.+++ ...|+|+.+.- | +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~-~~~-~~~~~~v----~~~Div~lavk------P-~ 68 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG-VET-SATLPEL----HSDDVLILAVK------P-Q 68 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTC-CEE-ESSCCCC----CTTSEEEECSC------H-H
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcc-ccc-ccccccc----cccceEEEecC------H-H
Confidence 578 98887 3 34555666665699999999999988888764 332 2333333 34799997632 3 3
Q ss_pred HHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 196 VFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 196 al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
.+.++.+-+++.+.++|+...|. .+..+.+.
T Consensus 69 ~~~~v~~~l~~~~~~viS~~ag~-~~~~l~~~ 99 (152)
T d1yqga2 69 DMEAACKNIRTNGALVLSVAAGL-SVGTLSRY 99 (152)
T ss_dssp HHHHHHTTCCCTTCEEEECCTTC-CHHHHHHH
T ss_pred HHHHhHHHHhhcccEEeecccCC-CHHHHHHH
Confidence 45566666888999999855443 23444433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.092 Score=43.82 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=56.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~f 185 (274)
.|.+|| .|.+.| .++..|++.+ .+|+.+|.+++-++...++.+++..+++|+.+.. .+-+..|+++.+.
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA 84 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence 567888 888877 4455666666 5999999999999999999999988998885521 2337899999886
Q ss_pred cCcC
Q 023974 186 LPAM 189 (274)
Q Consensus 186 ~l~~ 189 (274)
+...
T Consensus 85 g~~~ 88 (244)
T d1pr9a_ 85 AVAL 88 (244)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6544
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.33 E-value=0.39 Score=35.45 Aligned_cols=102 Identities=8% Similarity=-0.048 Sum_probs=59.9
Q ss_pred eEE-EEcCc-hH-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC----CCCccEEEecccCcCCC
Q 023974 119 KVL-VSISS-EE-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK----WGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 119 rVL-vGcGT-G~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~----~~sFD~V~~~f~l~~~~ 191 (274)
+++ +|+|. |. ++..|.+.+ ..|+++|.+++.++.+++.. ...+.||+.+...- -...|+|++...= .
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~-~-- 75 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMG-HEVLAVDINEEKVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAIGA-N-- 75 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECCCS-C--
T ss_pred EEEEECCCHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEcCc-h--
Confidence 456 76664 32 233444445 58999999999999987654 45567898775421 2457887765321 1
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
+-...+-.+.+.+.|.++++.. .......+.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~iiar-~~~~~~~~~l~~~ 110 (134)
T d2hmva1 76 IQASTLTTLLLKELDIPNIWVK-AQNYYHHKVLEKI 110 (134)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE-CCSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCcEEee-cccHhHHHHHHHC
Confidence 2234455566667777787653 3333333444433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.31 E-value=0.055 Score=45.40 Aligned_cols=55 Identities=9% Similarity=-0.113 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT 160 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~ 160 (274)
-++++|... -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++..+.|++|..+
T Consensus 239 L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 239 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcC-CcEEEEeCCHHHHHHHHHHHHh
Confidence 466777655 46889999 9999998888777767 4999999999999999998654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.055 Score=45.66 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=64.9
Q ss_pred CCeE-E-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC----------CCCCC
Q 023974 117 SSKV-L-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 117 ~~rV-L-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~~~s 177 (274)
|.|| | =|+++| .++..|++.+..+|+..+-+++-++.+.++ .+++.++++|+.+.. ..-+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 5677 4 466565 234556665336999999999888776654 457889999986643 12368
Q ss_pred ccEEEecccCcCCC---C----------------HHHHHHHHHHhcCCCCEEEEE
Q 023974 178 LDVVFLYFLPAMPF---P----------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 178 FD~V~~~f~l~~~~---d----------------~~~al~el~RvLKPGGrlvIs 213 (274)
.|+++.|.+..... + +-...+.+...+|++|+++..
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999997754321 1 112455667788999998764
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.12 Score=41.37 Aligned_cols=100 Identities=10% Similarity=-0.053 Sum_probs=62.7
Q ss_pred HHHHhCCCCCCCeEE-EE--cCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEee-ccCCCCCCCCccEEE
Q 023974 107 QIISAGEIDESSKVL-VS--ISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGE-LIYVPDKWGPLDVVF 182 (274)
Q Consensus 107 ~ll~~~~~~~~~rVL-vG--cGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gD-ae~LPf~~~sFD~V~ 182 (274)
.+.+....+++++|| .| .|.|.++..|++....+|+++.-+++..+.+++---+.-+-..| ...-......+|.|+
T Consensus 22 ~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 22 ALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp HHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred HHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeE
Confidence 344444444556888 33 23577777887764469999999999988887643221111111 111223456788876
Q ss_pred ecccCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 183 LYFLPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 183 ~~f~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
=+ +. ...+.+..+.|++||++++.
T Consensus 102 D~-----Vg--g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 102 DT-----VG--DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp ES-----SC--HHHHHHHHHTEEEEEEEEEC
T ss_pred EE-----cc--hHHHHHHHHHhccccceEee
Confidence 32 21 35788999999999999983
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.89 E-value=0.2 Score=41.67 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=54.5
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC------CCCCCccEEEecc
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP------DKWGPLDVVFLYF 185 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP------f~~~sFD~V~~~f 185 (274)
.|.++| -|.+.| .++..|++.+ .+|+.+|.+++-++...+..+++..+++|+.+.. .+-+..|+++.+.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA 82 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA 82 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence 467888 887776 3344555556 5999999999999998888999999998886532 2237899999886
Q ss_pred cCc
Q 023974 186 LPA 188 (274)
Q Consensus 186 ~l~ 188 (274)
+..
T Consensus 83 g~~ 85 (242)
T d1cyda_ 83 ALV 85 (242)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.15 Score=42.86 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=54.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccEE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDVV 181 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~V 181 (274)
.|.++| -|++.| .++..|++.+ .+|+.+|.+++-++...+..+++.++++|+.+.. ..-+..|++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil 83 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV 83 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 467788 787776 3345555556 5999999999999999999999999999985522 122689999
Q ss_pred EecccC
Q 023974 182 FLYFLP 187 (274)
Q Consensus 182 ~~~f~l 187 (274)
+.+.+.
T Consensus 84 VnnAG~ 89 (250)
T d1ydea1 84 VNNAGH 89 (250)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 988764
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.25 Score=41.28 Aligned_cols=72 Identities=10% Similarity=0.021 Sum_probs=50.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC--CceEEEeeccCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD--TVKCWQGELIYVP----------DKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~--~v~~~~gDae~LP----------f~~ 175 (274)
++..|| -|+++| .++..|++.| .+|+.+|.+++-++.+.++ .. .+.++++|+.+-. ..-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 356788 888887 3455556666 5999999999988876654 22 4667788886522 123
Q ss_pred CCccEEEecccCc
Q 023974 176 GPLDVVFLYFLPA 188 (274)
Q Consensus 176 ~sFD~V~~~f~l~ 188 (274)
+..|+++.+.+..
T Consensus 88 g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 88 SGVDICINNAGLA 100 (257)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 6899999886554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.20 E-value=0.024 Score=46.43 Aligned_cols=52 Identities=6% Similarity=-0.045 Sum_probs=36.5
Q ss_pred eEEEeeccCC-C-CCCCCccEEEec--ccCc-----CCCC-------HHHHHHHHHHhcCCCCEEEEE
Q 023974 162 KCWQGELIYV-P-DKWGPLDVVFLY--FLPA-----MPFP-------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 162 ~~~~gDae~L-P-f~~~sFD~V~~~--f~l~-----~~~d-------~~~al~el~RvLKPGGrlvIs 213 (274)
++.+||..++ . .+++++|+|+.. |... ...+ ..+.++|+.|+|||||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 4678888652 2 457999999976 4321 1112 345889999999999999875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.19 E-value=0.26 Score=37.94 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=58.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC------ceEEEe---eccCCCCCCCCccEEEecc
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDT------VKCWQG---ELIYVPDKWGPLDVVFLYF 185 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~------v~~~~g---Dae~LPf~~~sFD~V~~~f 185 (274)
.+|- ||+|. | .++..|++.+ .+|+.+|.+++-++..+++... .+.... ...++...-...|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~- 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV- 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC-
T ss_pred CEEEEECccHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE-
Confidence 4677 88887 3 4455566666 5999999999988888765321 111100 011111112568999986
Q ss_pred cCcCCCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 186 LPAMPFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 186 ~l~~~~d~~~al~el~RvLKPGGrlvIs 213 (274)
...+ ..+.+++++...|+++-.+++.
T Consensus 80 v~~~--~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 80 VPAI--HHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp SCGG--GHHHHHHHHGGGCCTTCEEEES
T ss_pred Echh--HHHHHHHHhhhccCCCCEEEEe
Confidence 3322 4689999999999998876654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.12 E-value=0.49 Score=41.63 Aligned_cols=71 Identities=7% Similarity=0.095 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh---C----C-CcEEEEeCcHHHHHHHHHhCCCc--eEEEeeccC
Q 023974 102 IQRIDQIISAGEIDESSKVL-VSISSEEFVDRVVES---S----P-SLLLVVHDSLFVLAGIKEKYDTV--KCWQGELIY 170 (274)
Q Consensus 102 ~~w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~---~----~-~~V~gVD~S~~ML~~Ar~k~~~v--~~~~gDae~ 170 (274)
..|...+.+.++....-+|+ +|+|+|.++..+++. . . ..+.-|+.|+.+-+.-+++..+. -.|..+.++
T Consensus 65 a~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~~~~~ 144 (365)
T d1zkda1 65 GLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFED 144 (365)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGG
T ss_pred HHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceeccChhh
Confidence 34677777777766666899 999999998766542 1 1 35899999999887777765542 124455666
Q ss_pred CC
Q 023974 171 VP 172 (274)
Q Consensus 171 LP 172 (274)
+|
T Consensus 145 ~~ 146 (365)
T d1zkda1 145 VP 146 (365)
T ss_dssp SC
T ss_pred cc
Confidence 66
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.73 E-value=0.077 Score=44.46 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=38.2
Q ss_pred ceEEEeeccCCC--CCCCCccEEEec--ccCc------C------CCCHHHHHHHHHHhcCCCCEEEEE
Q 023974 161 VKCWQGELIYVP--DKWGPLDVVFLY--FLPA------M------PFPLDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 161 v~~~~gDae~LP--f~~~sFD~V~~~--f~l~------~------~~d~~~al~el~RvLKPGGrlvIs 213 (274)
-++++||..++- ++++++|+|+.. |... + .....+.+++++|+|||+|.+++.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 367889986521 457999999976 3321 1 111457899999999999999985
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.64 E-value=0.21 Score=40.47 Aligned_cols=53 Identities=13% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKY 158 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~ 158 (274)
-.+++|+..- .+|+.|| -=||+|..+.+..+.+ .+.+|+|++++-.++|++|.
T Consensus 201 L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~-R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHH
Confidence 4567776654 6889999 9999998887776766 49999999999999999874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.14 Score=43.33 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=78.4
Q ss_pred CeEE-EEcCchHHHHHHHHhCC--CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC---CCCccEEEec-----cc
Q 023974 118 SKVL-VSISSEEFVDRVVESSP--SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK---WGPLDVVFLY-----FL 186 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~--~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~---~~sFD~V~~~-----f~ 186 (274)
-+|+ +-||.|-+...|...|- .-|.++|+.+..++.-+..+|+..++.+|+.++... ...+|+++.+ |.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence 4799 99999988777766653 247799999999999999999999999999887532 2368999855 22
Q ss_pred CcC----CCCHH-HHHHHHHHhc-----CCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEE
Q 023974 187 PAM----PFPLD-QVFETLANRC-----SPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNF 256 (274)
Q Consensus 187 l~~----~~d~~-~al~el~RvL-----KPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~ 256 (274)
... ..|.+ ..+-++.|++ ||- .+++-.-.+-.. .-..+.+.+.|++.||++...
T Consensus 83 ~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~---------------~~~~~~i~~~l~~~GY~v~~~ 146 (343)
T d1g55a_ 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFEV---------------SSTRDLLIQTIENCGFQYQEF 146 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGG---------------SHHHHHHHHHHHHTTEEEEEE
T ss_pred ccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCccc---------------chhhHHHHhhhhcccccccee
Confidence 211 22333 4555666654 352 233321111000 011357788899999987654
Q ss_pred Ee
Q 023974 257 VD 258 (274)
Q Consensus 257 ~d 258 (274)
+-
T Consensus 147 vl 148 (343)
T d1g55a_ 147 LL 148 (343)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.83 E-value=0.46 Score=39.55 Aligned_cols=88 Identities=6% Similarity=0.001 Sum_probs=62.4
Q ss_pred eEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCC-CCCccEEEec-----c---cCc
Q 023974 119 KVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDK-WGPLDVVFLY-----F---LPA 188 (274)
Q Consensus 119 rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~-~~sFD~V~~~-----f---~l~ 188 (274)
+|| +=||-|-+...|.+.|-..+.++|+.+...+.-+..+++ ...++|+.++... -..+|+++.+ | +-+
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~~ 80 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA-KLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGSL 80 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS-EEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC-CCccCChhhCCHhHcccccEEeeccccccccccccc
Confidence 689 999999888888766644677999999999999999985 4578999998543 3568999955 2 222
Q ss_pred C-CCCHH-HHHH---HHHHhcCCC
Q 023974 189 M-PFPLD-QVFE---TLANRCSPG 207 (274)
Q Consensus 189 ~-~~d~~-~al~---el~RvLKPG 207 (274)
. ..|.+ ..+- ++.+.+||-
T Consensus 81 ~g~~d~r~~l~~~~~~~i~~~~Pk 104 (324)
T d1dcta_ 81 RGIDDPRGKLFYEYIRILKQKKPI 104 (324)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHCCS
T ss_pred ccccccccchHHHHHHHHHhhCCc
Confidence 2 34554 3333 355667883
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.64 E-value=0.27 Score=41.08 Aligned_cols=72 Identities=10% Similarity=-0.000 Sum_probs=50.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+|..+| -|.+.| .++..|++.+ .+|+.+|.+++-++.+.+..+ +..++++|+.+.. ..-+..|+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi 83 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence 456778 677666 3455566666 599999999999988777654 4667788876532 12268999
Q ss_pred EEecccCc
Q 023974 181 VFLYFLPA 188 (274)
Q Consensus 181 V~~~f~l~ 188 (274)
++.+.+..
T Consensus 84 lVnnAG~~ 91 (253)
T d1hxha_ 84 LVNNAGIL 91 (253)
T ss_dssp EEECCCCC
T ss_pred EEeccccc
Confidence 99886654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.15 E-value=1.2 Score=32.66 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=62.8
Q ss_pred cCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----CCCCCccEEEecccCcCCCCHHHHHH
Q 023974 124 ISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 124 cGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
||-|.++..+++.-. ..|+.||.+++..+.++++ ++.++.||+.+-- ..-+..+.|++.. .. +.....+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~~-d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--GANFVHGDPTRVSDLEKANVRGARAVIVNL--ES-DSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--TCEEEESCTTSHHHHHHTTCTTCSEEEECC--SS-HHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--CccccccccCCHHHHHHhhhhcCcEEEEec--cc-hhhhHHHH
Confidence 344567777777533 5799999999998887654 6888999986622 2235678887642 11 12234455
Q ss_pred HHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 199 TLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 199 el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
...|-+.|..+++.. .........++..
T Consensus 81 ~~~r~~~~~~~iia~-~~~~~~~~~l~~~ 108 (129)
T d2fy8a1 81 LGIRKIDESVRIIAE-AERYENIEQLRMA 108 (129)
T ss_dssp HHHHHHCSSSCEEEE-CSSGGGHHHHHHH
T ss_pred HHHHHHCCCceEEEE-EcCHHHHHHHHHC
Confidence 667889999888774 2333444444433
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.49 Score=39.25 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=56.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CC--CceEEEeeccCCC----------CCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YD--TVKCWQGELIYVP----------DKW 175 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~--~v~~~~gDae~LP----------f~~ 175 (274)
.|..|| -|++.| .++..|++.+ .+|+.+|.+.+-++.+.++ ++ ++.++++|+.+.. ..-
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 366788 787776 2344455555 5999999999988776654 22 3677889986632 122
Q ss_pred CCccEEEecccCcCCCCHHHHHH
Q 023974 176 GPLDVVFLYFLPAMPFPLDQVFE 198 (274)
Q Consensus 176 ~sFD~V~~~f~l~~~~d~~~al~ 198 (274)
+..|+++.+.+.....+.++.+.
T Consensus 81 G~iDilVnnAg~~~~~~~~~~~~ 103 (254)
T d2gdza1 81 GRLDILVNNAGVNNEKNWEKTLQ 103 (254)
T ss_dssp SCCCEEEECCCCCCSSSHHHHHH
T ss_pred CCcCeecccccccccccchheee
Confidence 68999999988877776665543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=88.74 E-value=0.33 Score=41.04 Aligned_cols=128 Identities=8% Similarity=0.023 Sum_probs=80.1
Q ss_pred CCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCC-CCccEEEec-----ccCc
Q 023974 116 ESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKW-GPLDVVFLY-----FLPA 188 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~-~sFD~V~~~-----f~l~ 188 (274)
.+-||| +-||-|-+...|.+.+-..|.++|+.+..++.-+..+++.. ++|+.++...+ ..+|+++.+ |...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~~--~~Di~~~~~~~~~~~Dll~ggpPCq~fS~a 87 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCCC--cCchhcCchhhcceeeeeecccccchhhhh
Confidence 456999 99999999888876664467889999999999999988754 58888875432 579999965 2222
Q ss_pred C----CCCHH-HHHHHH---HHhcCCCCEEEEEcCCChhHHHHHHhhCcccccccCCCHHHHHHHHHhCCCcEeEEEe
Q 023974 189 M----PFPLD-QVFETL---ANRCSPGARVVISHPQGREALQKQRKQFPDVIVSDLPDQMTLQKAAGNHCFQIDNFVD 258 (274)
Q Consensus 189 ~----~~d~~-~al~el---~RvLKPGGrlvIs~~~gr~~l~~~~~~~~~~si~~fps~~eL~~ll~~aGF~~v~~~d 258 (274)
+ ..|++ ..+.++ .+.+||- .+++-.-. +.+. ......-+++.+.|++.||++...+-
T Consensus 88 g~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~--~~~~----------~~~~~~~~~i~~~l~~lGY~~~~~vl 152 (327)
T d2c7pa1 88 GKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVK--NFAS----------HDNGNTLEVVKNTMNELDYSFHAKVL 152 (327)
T ss_dssp SCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEG--GGGT----------GGGGHHHHHHHHHHHHTTBCCEEEEE
T ss_pred hhhcCCcccchhHHHHHHHHHhccCCc-EEecccch--hhhh----------hccchhhHHhhhHHHhcCCcceeeEe
Confidence 1 22333 244443 4446773 33332111 1000 01111236777888999997665443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.10 E-value=0.31 Score=39.90 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=44.2
Q ss_pred HHHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC
Q 023974 104 RIDQIISAGEIDESSKVL-VSISSEEFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD 159 (274)
Q Consensus 104 w~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~ 159 (274)
-+++++... -.+|+.|| -=||+|..+.+..+.+ .+.+|+|++++-.+.|++|..
T Consensus 196 L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 196 VIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp HHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHH
T ss_pred HHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHH
Confidence 456777654 46889999 9999998887777777 499999999999999998753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=87.84 E-value=2.5 Score=31.68 Aligned_cols=105 Identities=9% Similarity=-0.029 Sum_probs=61.9
Q ss_pred CeEE-EEcCc-h-HHHHHHHHhCCCcEEEEeCcHHHHHHH-HH-hCCCceEEEeeccCCC----CCCCCccEEEecccCc
Q 023974 118 SKVL-VSISS-E-EFVDRVVESSPSLLLVVHDSLFVLAGI-KE-KYDTVKCWQGELIYVP----DKWGPLDVVFLYFLPA 188 (274)
Q Consensus 118 ~rVL-vGcGT-G-~l~~~L~~~~~~~V~gVD~S~~ML~~A-r~-k~~~v~~~~gDae~LP----f~~~sFD~V~~~f~l~ 188 (274)
++|+ +|+|. | .++..|.+.+ ..|+.||..++..... .+ +..++.++.||+.+-. ..-+..|+|++...
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~-- 80 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD-- 80 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS--
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccc--
Confidence 3677 88875 2 2233444444 5899999998765433 22 3457899999987632 12356788886531
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEEEcCCChhHHHHHHhh
Q 023974 189 MPFPLDQVFETLANRCSPGARVVISHPQGREALQKQRKQ 227 (274)
Q Consensus 189 ~~~d~~~al~el~RvLKPGGrlvIs~~~gr~~l~~~~~~ 227 (274)
. ..........+|-+.|.-+++.. ...+.....+...
T Consensus 81 ~-d~~n~~~~~~~r~~~~~~~iia~-~~~~~~~~~l~~~ 117 (153)
T d1id1a_ 81 N-DADNAFVVLSAKDMSSDVKTVLA-VSDSKNLNKIKMV 117 (153)
T ss_dssp C-HHHHHHHHHHHHHHTSSSCEEEE-CSSGGGHHHHHTT
T ss_pred c-HHHHHHHHHHHHHhCCCCceEEE-EcCHHHHHHHHHC
Confidence 1 12223444567778888888774 3334444444443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.54 E-value=0.79 Score=37.97 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=52.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~~~s 177 (274)
.|..|| -|++.| .++..|++.+ .+|+.+|.+++-|+...++ .+++..+.+|+.+.- ...+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 466778 788887 4455566666 5999999999988776654 346778888886632 24578
Q ss_pred ccEEEecccCcC
Q 023974 178 LDVVFLYFLPAM 189 (274)
Q Consensus 178 FD~V~~~f~l~~ 189 (274)
.|+++.+.+...
T Consensus 85 idilinnag~~~ 96 (244)
T d1yb1a_ 85 VSILVNNAGVVY 96 (244)
T ss_dssp CSEEEECCCCCC
T ss_pred CceeEeeccccc
Confidence 999998866543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=87.16 E-value=0.56 Score=34.08 Aligned_cols=86 Identities=10% Similarity=-0.054 Sum_probs=50.7
Q ss_pred CCCeEE-EEcCchHH--HHHHHHhCCCcEEEE--eCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCC
Q 023974 116 ESSKVL-VSISSEEF--VDRVVESSPSLLLVV--HDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMP 190 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l--~~~L~~~~~~~V~gV--D~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~ 190 (274)
.|.+|| ||.|.=.. +..|.+.+ ++|+.+ +.++++.+.+++ ..+++.+...+.- .-..+|+|++.-.
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~g-a~v~v~~~~~~~~~~~~~~~--~~i~~~~~~~~~~--dl~~~~lv~~at~---- 81 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAG-ARLTVNALTFIPQFTVWANE--GMLTLVEGPFDET--LLDSCWLAIAATD---- 81 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT-BEEEEEESSCCHHHHHHHTT--TSCEEEESSCCGG--GGTTCSEEEECCS----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCChHHHHHHhc--CCceeeccCCCHH--HhCCCcEEeecCC----
Confidence 357999 99987432 33444445 355554 667777766643 4577766554332 2245777776521
Q ss_pred CCHHHHHHHHHHhcCCCCEEEE
Q 023974 191 FPLDQVFETLANRCSPGARVVI 212 (274)
Q Consensus 191 ~d~~~al~el~RvLKPGGrlvI 212 (274)
| ++.-+++++.+|+-|.+|=
T Consensus 82 -d-~~~n~~i~~~a~~~~ilVN 101 (113)
T d1pjqa1 82 -D-DTVNQRVSDAAESRRIFCN 101 (113)
T ss_dssp -C-HHHHHHHHHHHHHTTCEEE
T ss_pred -C-HHHHHHHHHHHHHcCCEEE
Confidence 2 2344566677777788864
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=86.76 E-value=2.4 Score=36.25 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=58.1
Q ss_pred CeEE-EEcCchHHHHHHHHhCC-CcEEEEeCcHHHHHHHHHhC------C--CceEEEeeccC-CC--CCCCCcc----E
Q 023974 118 SKVL-VSISSEEFVDRVVESSP-SLLLVVHDSLFVLAGIKEKY------D--TVKCWQGELIY-VP--DKWGPLD----V 180 (274)
Q Consensus 118 ~rVL-vGcGTG~l~~~L~~~~~-~~V~gVD~S~~ML~~Ar~k~------~--~v~~~~gDae~-LP--f~~~sFD----~ 180 (274)
..|+ +|||-=....+|. ..+ .+++-||+ ++|++.-++.. + +...+..|..+ ++ +....|| .
T Consensus 91 ~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 4677 9999977666652 222 57888896 78887655542 1 23556666653 11 1112233 3
Q ss_pred EEec-ccCcCC--CCHHHHHHHHHHhcCCCCEEEEEc
Q 023974 181 VFLY-FLPAMP--FPLDQVFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~-f~l~~~--~d~~~al~el~RvLKPGGrlvIs~ 214 (274)
+++. .++..+ .+..+.++.+.....||++|++..
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 4433 334443 245578888999999999999853
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.08 E-value=0.5 Score=39.26 Aligned_cols=73 Identities=8% Similarity=-0.055 Sum_probs=52.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.|.++| -|++.| .++..|++.+ .+|+.+|.+++-++.+.+++. ++.++++|+.+.. ..-+..|+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi 83 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEG-AKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV 83 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence 466788 787776 3455666666 599999999999988887765 4677888875532 12267999
Q ss_pred EEecccCcC
Q 023974 181 VFLYFLPAM 189 (274)
Q Consensus 181 V~~~f~l~~ 189 (274)
++.+.+...
T Consensus 84 linnAG~~~ 92 (244)
T d1nffa_ 84 LVNNAGILN 92 (244)
T ss_dssp EEECCCCCC
T ss_pred EEECCcccC
Confidence 998866543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=85.98 E-value=0.65 Score=39.37 Aligned_cols=109 Identities=9% Similarity=0.004 Sum_probs=68.5
Q ss_pred HHHHHHhCCCCCCCeEE-EEcCchHHHHHHHHh----------------------------------------CC-CcEE
Q 023974 105 IDQIISAGEIDESSKVL-VSISSEEFVDRVVES----------------------------------------SP-SLLL 142 (274)
Q Consensus 105 ~~~ll~~~~~~~~~rVL-vGcGTG~l~~~L~~~----------------------------------------~~-~~V~ 142 (274)
+.+.+...+-..+..++ -.||+|++....+-. .. ..++
T Consensus 39 l~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~ 118 (249)
T d1o9ga_ 39 FQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERF 118 (249)
T ss_dssp HHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCcc
Confidence 34444445555666778 999999985532110 01 3577
Q ss_pred EEeCcHHHHHHHHH---h-----C-CCceEEEeeccCCCC-----CCCCccEEEec--ccCcCCCC-------HHHHHHH
Q 023974 143 VVHDSLFVLAGIKE---K-----Y-DTVKCWQGELIYVPD-----KWGPLDVVFLY--FLPAMPFP-------LDQVFET 199 (274)
Q Consensus 143 gVD~S~~ML~~Ar~---k-----~-~~v~~~~gDae~LPf-----~~~sFD~V~~~--f~l~~~~d-------~~~al~e 199 (274)
|.|..++|++.|++ + . ..+.+.++|+.+..- .....++|++| |+-|.-.+ ..+....
T Consensus 119 G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~ 198 (249)
T d1o9ga_ 119 GKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS 198 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHH
Confidence 99999999998853 2 1 236788888755331 24567999999 88776321 3345555
Q ss_pred HHHhcCCCCEEEEE
Q 023974 200 LANRCSPGARVVIS 213 (274)
Q Consensus 200 l~RvLKPGGrlvIs 213 (274)
+.++|...-.++|+
T Consensus 199 l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 199 LASALPAHAVIAVT 212 (249)
T ss_dssp HHHHSCTTCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 77788655556665
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=85.97 E-value=0.76 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=50.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCC----------CCCCCccEE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVP----------DKWGPLDVV 181 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LP----------f~~~sFD~V 181 (274)
.+..+| -|++.| .++..|++.+ .+|+.+|.+++-++.+.++.. .+++++|+.+.. ..-+..|++
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G-~~V~~~~r~~~~l~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 81 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEAVG-AHPVVMDVADPASVERGFAEALAHLGRLDGV 81 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTT-CEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHcC-CeEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence 356788 787776 2344555555 599999999999998887664 677888876532 112589999
Q ss_pred EecccCc
Q 023974 182 FLYFLPA 188 (274)
Q Consensus 182 ~~~f~l~ 188 (274)
+.+.+..
T Consensus 82 VnnAG~~ 88 (242)
T d1ulsa_ 82 VHYAGIT 88 (242)
T ss_dssp EECCCCC
T ss_pred EECCccc
Confidence 9886643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.68 E-value=1.4 Score=36.47 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=61.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCc-HHHHHHHHH----hCCCceEEEeeccCC----------CCCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDS-LFVLAGIKE----KYDTVKCWQGELIYV----------PDKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S-~~ML~~Ar~----k~~~v~~~~gDae~L----------Pf~~~ 176 (274)
.|.+|| -|++.| .++..|++.+ .+|+..|.+ .+.++...+ ...++.++++|+.+. ....+
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~G-a~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 466888 777776 3455566666 589999876 555555443 345688888888652 22336
Q ss_pred CccEEEecccCcCCC-----C--------------HHHHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPF-----P--------------LDQVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~-----d--------------~~~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+..... + +-...+.+.+.|+.+|++++.
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 889999875543222 1 112245567778888888773
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.24 E-value=0.65 Score=38.22 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=66.8
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.|..+| .|++.| .++..|++.+ .+|+..|.+.+-++...+++. ++.++++|+.+-. ..-+..|+
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi 82 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREG-ASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG 82 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence 467888 777776 3344555555 599999999999998888875 4778889875422 11267999
Q ss_pred EEecccCcCCC-----CHHH--------------HHHHHHHhcCCCCEEEEEc
Q 023974 181 VFLYFLPAMPF-----PLDQ--------------VFETLANRCSPGARVVISH 214 (274)
Q Consensus 181 V~~~f~l~~~~-----d~~~--------------al~el~RvLKPGGrlvIs~ 214 (274)
++.+.+..... +.++ ..+.+...++.+|.+++..
T Consensus 83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s 135 (241)
T d2a4ka1 83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG 135 (241)
T ss_dssp EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred eccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence 99886654332 2222 2445577788888888753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.52 E-value=0.084 Score=40.27 Aligned_cols=91 Identities=7% Similarity=0.049 Sum_probs=53.3
Q ss_pred eEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCc-eEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023974 119 KVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDTV-KCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 119 rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v-~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
+|+ +|+|. |.+ +..|++.+ ..|+.+|-+++-.+..+....+. .+..--....+.....+|+|++..-- .+.+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka---~~~~ 77 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG-HEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA---WQVS 77 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG---GGHH
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc---cchH
Confidence 788 99987 544 44555555 48999988764111100001111 11110111123334679999987432 2568
Q ss_pred HHHHHHHHhcCCCCEEEEE
Q 023974 195 QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvIs 213 (274)
.+++++...+.++..++..
T Consensus 78 ~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 78 DAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp HHHHHHHTTSCTTSCEEEE
T ss_pred HHHHhhccccCcccEEeec
Confidence 9999999999998887774
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=84.32 E-value=1.1 Score=37.51 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.|.+|| -|++.| .++..|++.+ .+|+.+|.+++-|+...++++ ++..+++|+.+.. ..-+..|+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi 82 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEG-AKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT 82 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence 467888 777666 2344455555 599999999999988777654 5778888876532 12268999
Q ss_pred EEecccC
Q 023974 181 VFLYFLP 187 (274)
Q Consensus 181 V~~~f~l 187 (274)
++.+.+.
T Consensus 83 lvnnAG~ 89 (276)
T d1bdba_ 83 LIPNAGI 89 (276)
T ss_dssp EECCCCC
T ss_pred ccccccc
Confidence 9988664
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.22 E-value=2 Score=33.25 Aligned_cols=91 Identities=12% Similarity=0.155 Sum_probs=53.9
Q ss_pred eEE-EEcCc-hHH-HHHHHHhCC-CcEEEE-eCcHHHHHHHHHhCC--CceEEEeeccCCCCCCCCccEEEecccCcCCC
Q 023974 119 KVL-VSISS-EEF-VDRVVESSP-SLLLVV-HDSLFVLAGIKEKYD--TVKCWQGELIYVPDKWGPLDVVFLYFLPAMPF 191 (274)
Q Consensus 119 rVL-vGcGT-G~l-~~~L~~~~~-~~V~gV-D~S~~ML~~Ar~k~~--~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~ 191 (274)
||. ||||. |.. +..+ ...+ ..++|| |.+++-.+...+++. ...-+-.|.+++- .+...|+|+++ ++.+
T Consensus 3 ki~iIG~G~~g~~~~~~l-~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~iD~v~I~-tp~~-- 77 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAI-HLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLL-EDPEIDALYVP-LPTS-- 77 (184)
T ss_dssp EEEEESCCTTHHHHHHHH-HHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHH-HCTTCCEEEEC-CCGG--
T ss_pred EEEEEcCCHHHHHHHHHH-HhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhh-hccccceeeec-ccch--
Confidence 677 99996 433 3334 3334 678876 999887666655543 2222356777664 35679999976 3322
Q ss_pred CHHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 192 PLDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 192 d~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
.-+.-+...|+-|=-+++..|..
T Consensus 78 ---~h~~~~~~~l~~g~~v~~EKP~~ 100 (184)
T d1ydwa1 78 ---LHVEWAIKAAEKGKHILLEKPVA 100 (184)
T ss_dssp ---GHHHHHHHHHTTTCEEEECSSCS
T ss_pred ---hhcchhhhhhhccceeecccccc
Confidence 12333444577776666655543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.51 E-value=1.2 Score=37.12 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=49.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----C-CCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----Y-DTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~-~~v~~~~gDae~LP----------f~~~ 176 (274)
.|.++| -|++.| .++..|++.| .+|+.+|.+.+-++.+.++ . ..+.++++|+.+.. ...+
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 456788 776666 3444555556 5999999999887665543 2 34677788875532 2347
Q ss_pred CccEEEecccCcC
Q 023974 177 PLDVVFLYFLPAM 189 (274)
Q Consensus 177 sFD~V~~~f~l~~ 189 (274)
..|+++.+.+...
T Consensus 103 ~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 103 HPNIVINNAAGNF 115 (294)
T ss_dssp SCSEEEECCCCCC
T ss_pred ccchhhhhhhhcc
Confidence 8999998866544
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.37 E-value=0.61 Score=40.19 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=42.7
Q ss_pred CCeEEEEcCchHHHHHHH----HhCCCcEEEEeC-c-------------------HHHHHHHHH-hCCCceEEEeeccCC
Q 023974 117 SSKVLVSISSEEFVDRVV----ESSPSLLLVVHD-S-------------------LFVLAGIKE-KYDTVKCWQGELIYV 171 (274)
Q Consensus 117 ~~rVLvGcGTG~l~~~L~----~~~~~~V~gVD~-S-------------------~~ML~~Ar~-k~~~v~~~~gDae~L 171 (274)
|.+|||--|||-++..|+ +.+ .+|+++|- + .+.+...+. ..++++|++||+.+.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 578996667987766554 445 59999992 2 222322222 235789999998764
Q ss_pred C-----CCCCCccEEEecc
Q 023974 172 P-----DKWGPLDVVFLYF 185 (274)
Q Consensus 172 P-----f~~~sFD~V~~~f 185 (274)
. +.+..+|+|+-.+
T Consensus 80 ~~l~~~~~~~~~d~ViHlA 98 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFG 98 (393)
T ss_dssp HHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHhhcchheeccc
Confidence 3 3344689998443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=83.19 E-value=0.95 Score=37.69 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=52.3
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
.|.++| -|.+.| .++..|++.+ .+|+.+|.+++-++...+..+ ++.++++|+.+.. ..-+..|+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence 466788 777776 4455566666 599999999998888777764 4778889986532 11268999
Q ss_pred EEecccCcC
Q 023974 181 VFLYFLPAM 189 (274)
Q Consensus 181 V~~~f~l~~ 189 (274)
++.+.+...
T Consensus 83 lVnnAg~~~ 91 (254)
T d1hdca_ 83 LVNNAGIST 91 (254)
T ss_dssp EEECCCCCC
T ss_pred EEecCcccc
Confidence 998866543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.08 E-value=0.76 Score=36.30 Aligned_cols=82 Identities=9% Similarity=0.001 Sum_probs=51.9
Q ss_pred HHHHHHhCCC-CCCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC---CceEEEeeccC---CCC
Q 023974 105 IDQIISAGEI-DESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD---TVKCWQGELIY---VPD 173 (274)
Q Consensus 105 ~~~ll~~~~~-~~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~---~v~~~~gDae~---LPf 173 (274)
+..+.+..+. -.|.+|| .|++.| .++..|++.+ .+|+.+|-+++-++.+.+... .+.+..+|..+ +..
T Consensus 10 v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (191)
T d1luaa1 10 VALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEG-AEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE 88 (191)
T ss_dssp HHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhc-cchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHH
Confidence 3455555543 3667888 776665 2344555556 599999999998887776542 34555555533 332
Q ss_pred CCCCccEEEecccC
Q 023974 174 KWGPLDVVFLYFLP 187 (274)
Q Consensus 174 ~~~sFD~V~~~f~l 187 (274)
.-+..|+|+.+.+.
T Consensus 89 ~~~~iDilin~Ag~ 102 (191)
T d1luaa1 89 AVKGAHFVFTAGAI 102 (191)
T ss_dssp HTTTCSEEEECCCT
T ss_pred HhcCcCeeeecCcc
Confidence 33678999988654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.08 E-value=0.8 Score=36.63 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=59.1
Q ss_pred CeEE-EEcCc-hHH-HHHHHHhCCCcEEEEeCcHHHHHHHHHhCCC----------c---------------eE-EEeec
Q 023974 118 SKVL-VSISS-EEF-VDRVVESSPSLLLVVHDSLFVLAGIKEKYDT----------V---------------KC-WQGEL 168 (274)
Q Consensus 118 ~rVL-vGcGT-G~l-~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~----------v---------------~~-~~gDa 168 (274)
.+|- ||+|+ |.- +..++..| ..|+.+|.+++.++.++++..+ . ++ ...|
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d- 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD- 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC-
T ss_pred EEEEEECcCHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch-
Confidence 3788 99988 433 33344445 5999999999999988765211 0 01 1112
Q ss_pred cCCCCCCCCccEEEecccCcCCCCHHHHHHHHHHhcCCCCEEEEEcC
Q 023974 169 IYVPDKWGPLDVVFLYFLPAMPFPLDQVFETLANRCSPGARVVISHP 215 (274)
Q Consensus 169 e~LPf~~~sFD~V~~~f~l~~~~d~~~al~el~RvLKPGGrlvIs~~ 215 (274)
+...-...|.|+=+ .+-+.+-..++++++.++++|+-.|.-++.
T Consensus 83 --~~~a~~~ad~ViEa-v~E~l~~K~~v~~~l~~~~~~~~ilasnTS 126 (192)
T d1f0ya2 83 --AASVVHSTDLVVEA-IVENLKVKNELFKRLDKFAAEHTIFASNTS 126 (192)
T ss_dssp --HHHHTTSCSEEEEC-CCSCHHHHHHHHHHHTTTSCTTCEEEECCS
T ss_pred --hHhhhcccceehhh-cccchhHHHHHHHHHhhhcccCceeeccCc
Confidence 11112456787754 444444466999999999999977766543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.08 E-value=1.7 Score=36.03 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=50.1
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC-----------CCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP-----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP-----------f~~~ 176 (274)
+|.+|| .|+..| .++..|++.+ .+|+.+|.+++-++.+.+. ...+.++++|+.+.- ..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G-~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 567899 887776 3455566666 5999999999877766654 345677788875522 1236
Q ss_pred CccEEEecccCcC
Q 023974 177 PLDVVFLYFLPAM 189 (274)
Q Consensus 177 sFD~V~~~f~l~~ 189 (274)
..|+++.+.+...
T Consensus 84 ~idilinnag~~~ 96 (258)
T d1ae1a_ 84 KLNILVNNAGVVI 96 (258)
T ss_dssp CCCEEEECCCCCC
T ss_pred CcEEEeccccccc
Confidence 7899998765443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.76 E-value=0.67 Score=38.44 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhC-CCceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKY-DTVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~-~~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+|.++| -|.+.| .++..|++.+ .+|+.+|.+++-++.+.+++ +++.++++|+.+-. ..-+..|+
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi 82 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI 82 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTT-EEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 356778 777776 3445555556 59999999999888877765 46778888886532 11268999
Q ss_pred EEecccCcC
Q 023974 181 VFLYFLPAM 189 (274)
Q Consensus 181 V~~~f~l~~ 189 (274)
++.+.+...
T Consensus 83 lVnnAg~~~ 91 (256)
T d1k2wa_ 83 LVNNAALFD 91 (256)
T ss_dssp EEECCCCCC
T ss_pred EEeeccccc
Confidence 998876543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.69 E-value=1.4 Score=33.18 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=27.5
Q ss_pred CCCeEE-EEcCchHH--HHHHHHhCCCcEEEE--eCcHHHHHHHHH
Q 023974 116 ESSKVL-VSISSEEF--VDRVVESSPSLLLVV--HDSLFVLAGIKE 156 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l--~~~L~~~~~~~V~gV--D~S~~ML~~Ar~ 156 (274)
.|.+|| ||+|.-.+ +..|++.+ ++|+.| |+++++.+.+.+
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~G-A~VtVvap~~~~~l~~~~~~ 56 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTG-CKLTLVSPDLHKSIIPKFGK 56 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT-CEEEEEEEEECTTHHHHHCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCCCHHHHHHHHh
Confidence 568999 99998544 33455556 466666 778888777654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=0.72 Score=38.35 Aligned_cols=73 Identities=7% Similarity=0.015 Sum_probs=48.7
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC----------CCCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DKWGP 177 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~~~s 177 (274)
.|..+| -|.+.| .++..|++.+ .+|+.+|.+++-++.+.++ ..++.++++|+.+-. ..-+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT-CEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456777 666655 2233444445 6999999999888776654 346778899986532 12268
Q ss_pred ccEEEecccCcC
Q 023974 178 LDVVFLYFLPAM 189 (274)
Q Consensus 178 FD~V~~~f~l~~ 189 (274)
.|+++.+.+...
T Consensus 89 iDilvnnAG~~~ 100 (255)
T d1fmca_ 89 VDILVNNAGGGG 100 (255)
T ss_dssp CCEEEECCCCCC
T ss_pred CCEeeeCCcCCC
Confidence 999998866543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.22 E-value=1.1 Score=36.91 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=62.0
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEE-eCcHHHHHHHHHh----CCCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVV-HDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gV-D~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~~~ 176 (274)
.|.+|| -|.+.| .++..|++.+ .+|+.. +-+.+-++.+.+. ..++.++++|+.+.- .+.+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G-~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRG-ASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 567888 776665 5555666666 377764 5666666665543 346778888886522 2336
Q ss_pred CccEEEecccCcCCCCHH-------------------HHHHHHHHhcCCCCEEEEE
Q 023974 177 PLDVVFLYFLPAMPFPLD-------------------QVFETLANRCSPGARVVIS 213 (274)
Q Consensus 177 sFD~V~~~f~l~~~~d~~-------------------~al~el~RvLKPGGrlvIs 213 (274)
..|+++.+.+.....+.. ...+.+...++.+|.++|.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 899999887665443321 2455666777888888773
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.80 E-value=0.96 Score=37.23 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHhCC-CceEEEeeccCCC----------CCCCCccE
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEKYD-TVKCWQGELIYVP----------DKWGPLDV 180 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~-~v~~~~gDae~LP----------f~~~sFD~ 180 (274)
+|.++| -|.+.| .++..|++.+ .+|+..|.+++-++...++++ +..++++|+.+.. ..-+..|+
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G-~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI 81 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence 356777 676666 3444555556 599999999999988777654 5677788875522 22368999
Q ss_pred EEecccCcC
Q 023974 181 VFLYFLPAM 189 (274)
Q Consensus 181 V~~~f~l~~ 189 (274)
++.+.+...
T Consensus 82 lVnnAg~~~ 90 (243)
T d1q7ba_ 82 LVNNAGITR 90 (243)
T ss_dssp EEECCCCCC
T ss_pred ehhhhhhcc
Confidence 998865443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.79 E-value=1.3 Score=36.43 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=48.6
Q ss_pred CCCeEE-EEcCchHHHHH----HHHhCCCcEEEEeCcHHHHHHHHHhC----CCceEEEeeccCCC----------CCCC
Q 023974 116 ESSKVL-VSISSEEFVDR----VVESSPSLLLVVHDSLFVLAGIKEKY----DTVKCWQGELIYVP----------DKWG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG~l~~~----L~~~~~~~V~gVD~S~~ML~~Ar~k~----~~v~~~~gDae~LP----------f~~~ 176 (274)
++..+| .|.+.| ++.. |++.+ .+|+.+|.+++-++.+.++. .++.++++|+.+-. ..-+
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~G-a~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTS-SEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 355677 677666 4444 44444 59999999999988877653 35778889886532 2237
Q ss_pred CccEEEecccCc
Q 023974 177 PLDVVFLYFLPA 188 (274)
Q Consensus 177 sFD~V~~~f~l~ 188 (274)
..|+++.+.+..
T Consensus 87 ~iDilvnnag~~ 98 (251)
T d2c07a1 87 NVDILVNNAGIT 98 (251)
T ss_dssp CCCEEEECCCCC
T ss_pred Cceeeeeccccc
Confidence 899999886543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.65 E-value=2.1 Score=35.32 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=50.2
Q ss_pred CCCeEE-EEcCch---HHHHHHHHhCCCcEEEEeCcHHHHHHHHHh----CCCceEEEeeccCCC----------CC-CC
Q 023974 116 ESSKVL-VSISSE---EFVDRVVESSPSLLLVVHDSLFVLAGIKEK----YDTVKCWQGELIYVP----------DK-WG 176 (274)
Q Consensus 116 ~~~rVL-vGcGTG---~l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k----~~~v~~~~gDae~LP----------f~-~~ 176 (274)
.|..+| -|.+.| .++..|++.+ .+|+.+|.+++-++.+.++ ..++.++++|+.+.. .. ..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~G-a~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 467888 787776 3455566666 5999999999988776654 345677888875421 11 24
Q ss_pred CccEEEecccCcC
Q 023974 177 PLDVVFLYFLPAM 189 (274)
Q Consensus 177 sFD~V~~~f~l~~ 189 (274)
..|+++.+.+...
T Consensus 86 ~idilvnnAG~~~ 98 (259)
T d2ae2a_ 86 KLNILVNNAGIVI 98 (259)
T ss_dssp CCCEEEECCCCCC
T ss_pred CceEEEECCceec
Confidence 7999998876543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.43 E-value=0.85 Score=37.60 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=44.3
Q ss_pred CeEEEEcCchHHHHHH----HHhCCCcEEEEe-C----cHHHHHHHHHhCCCceEEEeeccCCC-----CCCCCccEEEe
Q 023974 118 SKVLVSISSEEFVDRV----VESSPSLLLVVH-D----SLFVLAGIKEKYDTVKCWQGELIYVP-----DKWGPLDVVFL 183 (274)
Q Consensus 118 ~rVLvGcGTG~l~~~L----~~~~~~~V~gVD-~----S~~ML~~Ar~k~~~v~~~~gDae~LP-----f~~~sFD~V~~ 183 (274)
++|||--|||-++..| ++++ .+|+++| + +.+-+... .+.+++++++||+.+.. ++...+|+|+-
T Consensus 1 ~KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~-~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 1 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWL-SSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHH-HTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHh-hccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 4788666788776554 4445 5999998 2 22233333 34678999999997633 23456899986
Q ss_pred cccC
Q 023974 184 YFLP 187 (274)
Q Consensus 184 ~f~l 187 (274)
.++.
T Consensus 79 ~aa~ 82 (338)
T d1orra_ 79 LAGQ 82 (338)
T ss_dssp CCCC
T ss_pred eccc
Confidence 6544
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=80.32 E-value=1.7 Score=33.68 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=55.8
Q ss_pred eEE-EEcCc-h-H-HHHHHHHhCC-CcEEEE-eCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCC
Q 023974 119 KVL-VSISS-E-E-FVDRVVESSP-SLLLVV-HDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFP 192 (274)
Q Consensus 119 rVL-vGcGT-G-~-l~~~L~~~~~-~~V~gV-D~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d 192 (274)
||. ||||. | . ....+.+... ..++|| |.+++..+...++++... .-.|.+++- ++...|+|+++ ++...
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~-~~~~~~ell-~~~~id~v~I~-tp~~~-- 79 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPA-VFDSYEELL-ESGLVDAVDLT-LPVEL-- 79 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCE-EESCHHHHH-HSSCCSEEEEC-CCGGG--
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccc-eeeeeeccc-cccccceeecc-ccccc--
Confidence 678 99986 3 2 3445544333 367775 999999888888776543 345666653 45779999876 33221
Q ss_pred HHHHHHHHHHhcCCCCEEEEEcCCC
Q 023974 193 LDQVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 193 ~~~al~el~RvLKPGGrlvIs~~~g 217 (274)
..+.. ...|+-|=.+++..|..
T Consensus 80 h~~~~---~~al~~gk~V~~EKPl~ 101 (181)
T d1zh8a1 80 NLPFI---EKALRKGVHVICEKPIS 101 (181)
T ss_dssp HHHHH---HHHHHTTCEEEEESSSS
T ss_pred ccccc---ccccccchhhhcCCCCc
Confidence 22333 33466666677766653
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=80.10 E-value=1 Score=34.56 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=54.2
Q ss_pred eEE-EEcCc-h-H-HHHHHHHhCCCcEEEEeCcHHHHHHHHHhCCCceEEEeeccCCCCCCCCccEEEecccCcCCCCHH
Q 023974 119 KVL-VSISS-E-E-FVDRVVESSPSLLLVVHDSLFVLAGIKEKYDTVKCWQGELIYVPDKWGPLDVVFLYFLPAMPFPLD 194 (274)
Q Consensus 119 rVL-vGcGT-G-~-l~~~L~~~~~~~V~gVD~S~~ML~~Ar~k~~~v~~~~gDae~LPf~~~sFD~V~~~f~l~~~~d~~ 194 (274)
||. ||||. | . ..+.+.+.....++++|.+++-.+...++++... +-.|.+++- + ..+|+|+++ ++.+. ..
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~ll-~-~~iD~V~I~-tp~~~--H~ 76 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSA-TCTDYRDVL-Q-YGVDAVMIH-AATDV--HS 76 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCC-CCSSTTGGG-G-GCCSEEEEC-SCGGG--HH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccc-ccccHHHhc-c-cccceeccc-ccccc--cc
Confidence 678 99985 3 2 2334433222577899999998888888876432 246777763 2 469999876 33322 22
Q ss_pred HHHHHHHHhcCCCCEEEEEcCCC
Q 023974 195 QVFETLANRCSPGARVVISHPQG 217 (274)
Q Consensus 195 ~al~el~RvLKPGGrlvIs~~~g 217 (274)
+... ..|+-|=.+++..|.+
T Consensus 77 ~~~~---~al~~gk~V~~EKP~~ 96 (167)
T d1xeaa1 77 TLAA---FFLHLGIPTFVDKPLA 96 (167)
T ss_dssp HHHH---HHHHTTCCEEEESCSC
T ss_pred cccc---cccccccccccCCCCc
Confidence 2222 3466665676766654
|