Citrus Sinensis ID: 023976

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
cEEEEccEEEcccccEEEEEcccEEEEcccEEEEcEEEEEEEEccEEEccccccccccccccccccccccccccEEEEEccEEEEEEccEEcccccccEEEEEccEEEEEEccEEEcccEEEEcccccccccccccEEEEEEEEEccccccccccccccEEEEEccEEcccccEEEEEccccEEEEEccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEcccEEEEEEccEEEEEEEccEEccccccHHHcccccEEEEccEEEEEEEcccEEcccEEEEEccEEccEEEEEEcccccccEEccccEEEccccccccEEEEEccccccccccccEEccccEEEcccEEEccccccccccccccccccccHHHHHHHHHccccccccccccc
MVITLKEELIMNSFKtidgrgasvhiaggpcitvQYVTNIIIHGinihdckrggnanvrdspshygwrtisdgdgvsifggSHVWvdhcslsncndglidaihgstaitisnnymthhnkvmllghsdtftqdkNMQVTIAFNHFGEGlvqrmprcrhgyfhvvnndythwemyalggsasptinsqgnrfvapndrfnkevtkyedapesewknwnwrsegdlmvngafftpsgagasssyakasslgarpsslISSITagagslncrkgkpc
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVtkyedapesewknwnWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLIssitagagslncrkgkpc
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPsgagasssyakasslgaRPSSLISSITAGAGSLNCRKGKPC
****LKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA*******************************EWKNWNWRSEGDLMVNGAFFT******************************************
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVT********EWKNWNWRSEGDLMVNGAFFTPSG*****************SSLISSITAGAGSLNCRKGKPC
MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSG***************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASSSYAKASSLGARPSSLISSITAGAGSLNCRKGKPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query274 2.2.26 [Sep-21-2011]
Q9FXD8408 Probable pectate lyase 5 yes no 1.0 0.671 0.868 1e-135
Q93Z25432 Probable pectate lyase 22 no no 1.0 0.634 0.826 1e-130
Q9C5M8408 Probable pectate lyase 18 no no 1.0 0.671 0.846 1e-129
Q944R1470 Probable pectate lyase 15 no no 1.0 0.582 0.748 1e-128
P24396404 Probable pectate lyase P1 N/A no 1.0 0.678 0.789 1e-126
Q9LTZ0412 Putative pectate lyase 11 no no 1.0 0.665 0.773 1e-122
Q9LJ42440 Probable pectate lyase 10 no no 1.0 0.622 0.751 1e-120
Q9M8Z8416 Probable pectate lyase 8 no no 1.0 0.658 0.733 1e-117
O24554401 Pectate lyase OS=Zinnia e N/A no 1.0 0.683 0.770 1e-117
Q9LRM5452 Probable pectate lyase 9 no no 0.996 0.603 0.689 1e-116
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/274 (86%), Positives = 255/274 (93%)

Query: 1   MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRD 60
           MVI LKEELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRD
Sbjct: 135 MVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRD 194

Query: 61  SPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 120
           SPSHYGWRT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNK
Sbjct: 195 SPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNK 254

Query: 121 VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA 180
           VMLLGHSD++T+DKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYA+GGSA
Sbjct: 255 VMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSA 314

Query: 181 SPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASS 240
           +PTINSQGNRF+APND   KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTPSG GASS
Sbjct: 315 APTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASS 374

Query: 241 SYAKASSLGARPSSLISSITAGAGSLNCRKGKPC 274
           SYAKASSL ARPSSL++S+T+ AG+L CRKG  C
Sbjct: 375 SYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
225424562 403 PREDICTED: probable pectate lyase 5 [Vit 1.0 0.679 0.905 1e-141
225456814 458 PREDICTED: probable pectate lyase 5-like 1.0 0.598 0.890 1e-140
147781724 403 hypothetical protein VITISV_004734 [Viti 1.0 0.679 0.890 1e-140
297733652 403 unnamed protein product [Vitis vinifera] 1.0 0.679 0.890 1e-140
449487728 413 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.663 0.897 1e-140
449469590 413 PREDICTED: probable pectate lyase 22-lik 1.0 0.663 0.897 1e-140
14289169 409 pectate lyase [Salix gilgiana] 1.0 0.669 0.901 1e-139
356563159 406 PREDICTED: probable pectate lyase 22 iso 1.0 0.674 0.897 1e-138
356563161 384 PREDICTED: probable pectate lyase 22 iso 1.0 0.713 0.897 1e-137
284504570 411 pectate lyase [Gossypium herbaceum] 1.0 0.666 0.894 1e-137
>gi|225424562|ref|XP_002285340.1| PREDICTED: probable pectate lyase 5 [Vitis vinifera] gi|296081403|emb|CBI16836.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/274 (90%), Positives = 268/274 (97%)

Query: 1   MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRD 60
           MVI LKEELIMNSFKTIDGRGASVHIAGGPCIT+QYVTNIIIHG+NIHDCK+GGNANVRD
Sbjct: 130 MVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNANVRD 189

Query: 61  SPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 120
           SP HYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL+DAIHGSTAITISNNYMTHHNK
Sbjct: 190 SPDHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTHHNK 249

Query: 121 VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA 180
           VMLLGHSD++TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDY+HWEMYA+GGSA
Sbjct: 250 VMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWEMYAIGGSA 309

Query: 181 SPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPSGAGASS 240
            PTINSQGNRF+AP+DRF+KEVTK+EDAP+S+WKNWNWRSEGDL++NGAFFT SGAGASS
Sbjct: 310 EPTINSQGNRFLAPDDRFSKEVTKHEDAPQSQWKNWNWRSEGDLLLNGAFFTASGAGASS 369

Query: 241 SYAKASSLGARPSSLISSITAGAGSLNCRKGKPC 274
           SYAKASSLGARPSSLI++IT GAG+LNC+KGK C
Sbjct: 370 SYAKASSLGARPSSLITTITNGAGALNCKKGKRC 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456814|ref|XP_002275781.1| PREDICTED: probable pectate lyase 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147781724|emb|CAN76500.1| hypothetical protein VITISV_004734 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733652|emb|CBI14899.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449487728|ref|XP_004157771.1| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449469590|ref|XP_004152502.1| PREDICTED: probable pectate lyase 22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|14289169|dbj|BAB59066.1| pectate lyase [Salix gilgiana] Back     alignment and taxonomy information
>gi|356563159|ref|XP_003549832.1| PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356563161|ref|XP_003549833.1| PREDICTED: probable pectate lyase 22 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|284504570|gb|ADB90475.1| pectate lyase [Gossypium herbaceum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query274
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 1.0 0.671 0.813 1.1e-126
TAIR|locus:2121914408 AT4G24780 [Arabidopsis thalian 1.0 0.671 0.791 5.5e-125
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 1.0 0.634 0.775 1.2e-122
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 1.0 0.665 0.729 7.1e-116
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 1.0 0.657 0.722 1.4e-112
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 1.0 0.582 0.700 2.2e-112
TAIR|locus:2093131440 AT3G24670 [Arabidopsis thalian 1.0 0.622 0.704 1.4e-110
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 1.0 0.658 0.689 3.4e-109
TAIR|locus:2197808431 AT1G04680 [Arabidopsis thalian 1.0 0.635 0.675 1.7e-107
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.996 0.603 0.660 3.6e-105
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 223/274 (81%), Positives = 240/274 (87%)

Query:     1 MVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRD 60
             MVI LKEELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRD
Sbjct:   135 MVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRD 194

Query:    61 SPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNK 120
             SPSHYGWRT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNK
Sbjct:   195 SPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNK 254

Query:   121 VMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSA 180
             VMLLGHSD++T+DKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW+MYA+GGSA
Sbjct:   255 VMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSA 314

Query:   181 SPTINSQGNRFVAPNDRFNKEVTKYEDAPESEWKNWNWRSEGDLMVNGAFFTPXXXXXXX 240
             +PTINSQGNRF+APND   KEVTKYEDAP S+WK WNWRSEGDL +NGAFFTP       
Sbjct:   315 APTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASS 374

Query:   241 XXXXXXXXXXRPSSLISSITAGAGSLNCRKGKPC 274
                       RPSSL++S+T+ AG+L CRKG  C
Sbjct:   375 SYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.86861.00.6715yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.77001.00.6832N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.78981.00.6782N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030705001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (444 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00036829001
RecName- Full=Pectinesterase; EC=3.1.1.11; (364 aa)
     •  0.899
GSVIVG00036367001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (308 aa)
     •  0.899
GSVIVG00035359001
RecName- Full=Pectinesterase; EC=3.1.1.11; (299 aa)
     •  0.899
GSVIVG00033995001
RecName- Full=Pectinesterase; EC=3.1.1.11; (581 aa)
     •  0.899
GSVIVG00033942001
SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (237 aa)
     •  0.899
GSVIVG00028034001
RecName- Full=Pectinesterase; EC=3.1.1.11; (465 aa)
     •  0.899
GSVIVG00026388001
RecName- Full=Pectinesterase; EC=3.1.1.11; (513 aa)
     •  0.899
GSVIVG00022688001
RecName- Full=Pectinesterase; EC=3.1.1.11; (477 aa)
     •  0.899
GSVIVG00021009001
RecName- Full=Pectinesterase; EC=3.1.1.11; (316 aa)
     •  0.899
GSVIVG00016383001
RecName- Full=Pectinesterase; EC=3.1.1.11; (357 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
smart00656190 smart00656, Amb_all, Amb_all domain 1e-78
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 1e-72
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 9e-24
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  235 bits (602), Expect = 1e-78
 Identities = 103/206 (50%), Positives = 124/206 (60%), Gaps = 28/206 (13%)

Query: 1   MVITLK--EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANV 58
           + ITL     +I+NS KTIDGRG+ V I GG  +T++ V+N+II  + IHD K       
Sbjct: 2   VTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVYG--- 57

Query: 59  RDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC---------NDGLIDAIHGSTAIT 109
                       SDGD +SI G S+VW+DH SLS C          DGLID  +GST +T
Sbjct: 58  ------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVT 105

Query: 110 ISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYT 169
           ISNNY  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR R GY HV NN YT
Sbjct: 106 ISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYYT 164

Query: 170 HWEMYALGGSASPTINSQGNRFVAPN 195
            W  YA+GG    TI S+GN F AP 
Sbjct: 165 GWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 274
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.68
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.26
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.13
PLN02218431 polygalacturonase ADPG 97.96
PLN03003456 Probable polygalacturonase At3g15720 97.91
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.83
PLN02155394 polygalacturonase 97.82
PLN02793443 Probable polygalacturonase 97.79
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.72
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.71
PLN03010409 polygalacturonase 97.69
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.68
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.46
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.3
PLN02218431 polygalacturonase ADPG 97.29
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.2
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.1
PLN03003456 Probable polygalacturonase At3g15720 97.03
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.01
PLN02155394 polygalacturonase 96.93
PLN03010409 polygalacturonase 96.86
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.83
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.62
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.54
PLN02793443 Probable polygalacturonase 96.37
smart00656190 Amb_all Amb_all domain. 96.17
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.15
PLN02480343 Probable pectinesterase 95.68
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 95.03
PLN02682369 pectinesterase family protein 93.84
PLN02432293 putative pectinesterase 93.52
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 93.38
PLN02773317 pectinesterase 93.23
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.19
PLN02416541 probable pectinesterase/pectinesterase inhibitor 93.19
PLN02488509 probable pectinesterase/pectinesterase inhibitor 92.48
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.48
PLN02217670 probable pectinesterase/pectinesterase inhibitor 92.34
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 92.12
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.07
PLN02176340 putative pectinesterase 92.03
PLN02197588 pectinesterase 91.96
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 91.96
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 91.94
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 91.92
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 91.76
PLN02201520 probable pectinesterase/pectinesterase inhibitor 91.74
PLN02484587 probable pectinesterase/pectinesterase inhibitor 91.7
PLN02304379 probable pectinesterase 91.59
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 91.37
PLN02634359 probable pectinesterase 91.01
PLN02916502 pectinesterase family protein 90.96
PLN02506537 putative pectinesterase/pectinesterase inhibitor 90.85
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 90.78
PLN02314586 pectinesterase 90.65
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 90.43
PLN02313587 Pectinesterase/pectinesterase inhibitor 90.39
PLN02671359 pectinesterase 90.37
PLN02665366 pectinesterase family protein 90.04
PLN02468565 putative pectinesterase/pectinesterase inhibitor 89.85
PLN02301548 pectinesterase/pectinesterase inhibitor 89.52
PLN02497331 probable pectinesterase 88.57
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 88.03
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 85.61
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 83.77
PRK10531422 acyl-CoA thioesterase; Provisional 83.51
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information 
Probab=100.00  E-value=3.9e-56  Score=392.35  Aligned_cols=182  Identities=41%  Similarity=0.643  Sum_probs=153.3

Q ss_pred             eEEecceEEcCCCceEEeecCceEEecCCcEEEe-eeceEEEEceEEEecccCCCccccCCCCCCCCcccCCCCcEEEeC
Q 023976            2 VITLKEELIMNSFKTIDGRGASVHIAGGPCITVQ-YVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFG   80 (274)
Q Consensus         2 ~I~L~~~L~v~snkTI~G~G~~~~I~~G~~l~i~-~~~NVIIrnl~i~~~~~~~~~~i~~~~~~~~~~~~~~~Dai~i~~   80 (274)
                      +|+++.+|.|+|||||+|+|++++|. |.++.+. +++|||||||+|+++.      ++..|...+.....++|+|++++
T Consensus        10 ~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~Dai~i~~   82 (200)
T PF00544_consen   10 TIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDGDAISIDN   82 (200)
T ss_dssp             CCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS--SEEEES
T ss_pred             EEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCCCeEEEEe
Confidence            56788999999999999999999999 6788886 8999999999999841      00011111111236899999999


Q ss_pred             CceEEEeceeccCC--------CCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCC
Q 023976           81 GSHVWVDHCSLSNC--------NDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQR  152 (274)
Q Consensus        81 s~nVWIDHcs~s~~--------~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R  152 (274)
                      ++|||||||+|+|+        .||++|++.++++||||||+|++|+|+||+|++|....+..++|||||||| +++.+|
T Consensus        83 ~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f-~~~~~R  161 (200)
T PF00544_consen   83 SSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF-ANTNSR  161 (200)
T ss_dssp             TEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE-EEEEE-
T ss_pred             cccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE-CchhhC
Confidence            99999999999999        999999999999999999999999999999999887777679999999999 799999


Q ss_pred             CccccCCeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEE
Q 023976          153 MPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRF  191 (274)
Q Consensus       153 ~Pr~r~G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F  191 (274)
                      +||+|+|++|+|||||+++..||+++++++++++|+|||
T Consensus       162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            999999999999999999999999999999999999999

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 3e-58
3zsc_A340 Catalytic Function And Substrate Recognition Of The 2e-15
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-14
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 2e-14
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 1e-13
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 2e-13
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 4e-13
3krg_A399 Structural Insights Into Substrate Specificity And 7e-13
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 1e-12
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 4e-11
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 1e-08
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 2e-08
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 2e-08
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 4e-06
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 2e-04
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 6e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/240 (49%), Positives = 160/240 (66%), Gaps = 15/240 (6%)
Query: 1   MVITLKEELIMNSFKTIDGRGASVHIA-GGPCITVQYVTNIIIHGINIHDCKRG--GNAN 57
           M I LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H ++IH C     G+  
Sbjct: 76  MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVL 135
Query: 58  VRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNN 113
           V +S    P H       DGD +++   ++ W+DH SLS+C+DGLID   GST ITISNN
Sbjct: 136 VSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNN 190
Query: 114 YMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM 173
           +  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV NN+Y  W +
Sbjct: 191 HFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNI 250
Query: 174 YALGGSASPTINSQGNRFVAPNDRFNKEVTKYE--DAPESEWKNWNWRSEGDLMVNGAFF 231
           YA+GGS++PTI S+GN F AP++ + KEVTK    ++P S   NW WRS  D  +NGA+F
Sbjct: 251 YAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESP-SACANWVWRSTRDAFINGAYF 309
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query274
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 5e-91
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 2e-71
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 8e-67
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 9e-66
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 7e-65
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 3e-64
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 2e-62
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 4e-55
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 5e-54
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-53
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 5e-51
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 4e-05
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 6e-05
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  272 bits (696), Expect = 5e-91
 Identities = 120/270 (44%), Positives = 164/270 (60%), Gaps = 4/270 (1%)

Query: 1   MVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVR 59
           M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H ++IH C      +V 
Sbjct: 76  MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVL 135

Query: 60  DSPSHYGW-RTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118
            S S         DGD +++   ++ W+DH SLS+C+DGLID   GST ITISNN+  +H
Sbjct: 136 VSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNH 195

Query: 119 NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGG 178
           +KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV NN+Y  W +YA+GG
Sbjct: 196 HKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGG 255

Query: 179 SASPTINSQGNRFVAPNDRFNKEVTKYEDA-PESEWKNWNWRSEGDLMVNGAFFTPSGAG 237
           S++PTI S+GN F AP++ + KEVTK       S   NW WRS  D  +NGA+F  SG  
Sbjct: 256 SSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKT 315

Query: 238 AS-SSYAKASSLGARPSSLISSITAGAGSL 266
              + Y    +      +    +T  AG +
Sbjct: 316 EETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.54
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.52
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.14
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.14
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.13
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.11
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.09
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.09
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.05
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.03
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.91
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.9
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.89
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.78
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.75
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.74
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.67
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.57
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.51
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.49
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.31
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.29
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.28
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.13
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.13
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.07
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.01
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 96.97
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 96.94
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.94
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.85
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.8
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.53
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.51
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.45
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.32
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.29
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.28
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.24
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.19
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.89
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.83
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.65
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 95.45
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.28
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.82
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 94.81
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 94.75
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.55
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 94.54
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 94.46
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.04
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 83.84
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 81.11
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=2.2e-73  Score=537.59  Aligned_cols=267  Identities=44%  Similarity=0.773  Sum_probs=251.0

Q ss_pred             CeEEecceEEcCCCceEEeecCceEEec-CCcEEEeeeceEEEEceEEEecccCCCccc-cCCCCCCCCcccCCCCcEEE
Q 023976            1 MVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANV-RDSPSHYGWRTISDGDGVSI   78 (274)
Q Consensus         1 m~I~L~~~L~v~snkTI~G~G~~~~I~~-G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i-~~~~~~~~~~~~~~~Dai~i   78 (274)
                      |+|+|+++|+|.|||||+|||++++|.| |.+|++++++|||||||+|+++.|.+++.| +++|.++|.+...++|+|+|
T Consensus        76 g~I~l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i  155 (346)
T 1pxz_A           76 MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITM  155 (346)
T ss_dssp             EEECCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEE
T ss_pred             cEEecCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEE
Confidence            6899999999999999999999999996 579999999999999999999998888777 88888888877789999999


Q ss_pred             eCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC
Q 023976           79 FGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH  158 (274)
Q Consensus        79 ~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~  158 (274)
                      ++++|||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.++||||||+|++++.+|+||+|+
T Consensus       156 ~~s~nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~  235 (346)
T 1pxz_A          156 RNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY  235 (346)
T ss_dssp             ESCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEES
T ss_pred             ecCceEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEec
Confidence            99999999999999999999999999999999999999999999999999888788899999999996699999999999


Q ss_pred             CeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCCCCCccceeeeccCC-CCCcCCceEeeccceEEeceEEecCCCC
Q 023976          159 GYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAP-ESEWKNWNWRSEGDLMVNGAFFTPSGAG  237 (274)
Q Consensus       159 G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~-~~~~~~~~~~s~gd~~~nG~~~~~sg~~  237 (274)
                      |++|++||||++|.+|++++++++++++|+|||+++++|..|++++|+.++ +.+|++|+|+++||+|+|||+|.+||..
T Consensus       236 g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~  315 (346)
T 1pxz_A          236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKT  315 (346)
T ss_dssp             SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCC
T ss_pred             ceEEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCC
Confidence            999999999999999999999999999999999999999899999998776 5579999999999999999999999986


Q ss_pred             CCC-CCCCCCccccCCCchHhhhhccccCCC
Q 023976          238 ASS-SYAKASSLGARPSSLISSITAGAGSLN  267 (274)
Q Consensus       238 ~~~-~y~~~~~~~~~~~~~v~~~~~~aG~~~  267 (274)
                      .+. +|+++.+++++|+++|++||+.||+|.
T Consensus       316 ~~~~~y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          316 EETNIYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCCCCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             ccCCCCCcccccccCCHHHHHHHhhhccCCC
Confidence            553 599999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 274
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 6e-93
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-71
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-63
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-58
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-51
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-38
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  276 bits (706), Expect = 6e-93
 Identities = 120/270 (44%), Positives = 164/270 (60%), Gaps = 4/270 (1%)

Query: 1   MVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVR 59
           M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H ++IH C      +V 
Sbjct: 76  MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVL 135

Query: 60  DSPS-HYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHH 118
            S S         DGD +++   ++ W+DH SLS+C+DGLID   GST ITISNN+  +H
Sbjct: 136 VSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNH 195

Query: 119 NKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGG 178
           +KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR R+G  HV NN+Y  W +YA+GG
Sbjct: 196 HKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGG 255

Query: 179 SASPTINSQGNRFVAPNDRFNKEVTKYEDA-PESEWKNWNWRSEGDLMVNGAFFTPSGAG 237
           S++PTI S+GN F AP++ + KEVTK       S   NW WRS  D  +NGA+F  SG  
Sbjct: 256 SSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKT 315

Query: 238 AS-SSYAKASSLGARPSSLISSITAGAGSL 266
              + Y    +      +    +T  AG +
Sbjct: 316 EETNIYNSNEAFKVENGNAAPQLTKNAGVV 345
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query274
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.14
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.09
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.83
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.81
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.77
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.68
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.66
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.6
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.51
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.47
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.28
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.15
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.92
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 96.88
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.71
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.52
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.38
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.99
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.89
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.71
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.71
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 94.88
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.41
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 93.51
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 93.06
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 91.11
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 88.65
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 83.67
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 82.9
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 80.14
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=5.6e-65  Score=477.90  Aligned_cols=267  Identities=45%  Similarity=0.775  Sum_probs=234.6

Q ss_pred             CeEEecceEEcCCCceEEeecCceEEec-CCcEEEeeeceEEEEceEEEecccCCCccccCCCC-CCCCcccCCCCcEEE
Q 023976            1 MVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPS-HYGWRTISDGDGVSI   78 (274)
Q Consensus         1 m~I~L~~~L~v~snkTI~G~G~~~~I~~-G~~l~i~~~~NVIIrnl~i~~~~~~~~~~i~~~~~-~~~~~~~~~~Dai~i   78 (274)
                      |+|+|+++|.|+|||||+|||+++.|.+ |.+|.+.+++|||||||+||++.+..+..+...+. +.+.....++|+|+|
T Consensus        76 g~I~l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i  155 (346)
T d1pxza_          76 MNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITM  155 (346)
T ss_dssp             EEECCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEE
T ss_pred             EEEeccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeee
Confidence            6899999999999999999999999984 45688899999999999999887665444322211 111122468999999


Q ss_pred             eCCceEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeEEEecCCCcccCCCcceEEEEceEecCCCCCCCccccC
Q 023976           79 FGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRH  158 (274)
Q Consensus        79 ~~s~nVWIDHcs~s~~~Dglidv~~~s~~VTVS~~~f~~h~k~~LiG~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~r~  158 (274)
                      ++++|||||||+|+|+.||++|+++++++||||||+|++|+|+||+|+++....++.++||||||+|..+..+|+|++|+
T Consensus       156 ~~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~  235 (346)
T d1pxza_         156 RNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARY  235 (346)
T ss_dssp             ESCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEES
T ss_pred             ecCceEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCcccc
Confidence            99999999999999999999999999999999999999999999999999877778899999999997677888899999


Q ss_pred             CeeEEEcCeEeCCcceEEeeCCCCeEEEEcCEEecCCCCCccceeeeccCCC-CCcCCceEeeccceEEeceEEecCCCC
Q 023976          159 GYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVAPNDRFNKEVTKYEDAPE-SEWKNWNWRSEGDLMVNGAFFTPSGAG  237 (274)
Q Consensus       159 G~~Hv~NN~~~~~~~yaig~~~~~~i~~egN~F~~~~~~~~k~vt~r~~~~~-~~~~~~~~~s~gd~~~nG~~~~~sg~~  237 (274)
                      |++|++||||++|..||+++++++++++|+|||++++.|..|+++++..... .++.+|.|++++|+|+||+++.+++..
T Consensus       236 g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~  315 (346)
T d1pxza_         236 GLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKT  315 (346)
T ss_dssp             SEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCC
T ss_pred             ceEEEECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCc
Confidence            9999999999999999999999999999999999999999999998876533 247899999999999999999998875


Q ss_pred             CC-CCCCCCCccccCCCchHhhhhccccCCC
Q 023976          238 AS-SSYAKASSLGARPSSLISSITAGAGSLN  267 (274)
Q Consensus       238 ~~-~~y~~~~~~~~~~~~~v~~~~~~aG~~~  267 (274)
                      .. ..|.++.++++.|+++|++|++.||||+
T Consensus       316 ~~~~~~~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         316 EETNIYNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCCCCCCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cccccccCccccccCCHHHHHhhhccCCCCC
Confidence            43 4577788899999999999999999995
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure