Citrus Sinensis ID: 023977

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Secondary Structure (PSIPRED)
ccccEEEEEEccccEEEEEcccccccccccccEEEccccccccccEEcEEEEEcccccccccccccEEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEEcccccccccccccEEEccHHHHHccEEEEEEEEEEccccEEEcccEEEEEEEEEEEEEEccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgqalgciqvdqSTVAIKETfgkfddvlepgchclpwclgsqvagqlSLRVQQLDvrcetktkdnvFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRasvpkldldatfEQKNDIAKAVEEELEKTLivdiepdeHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLafsenvpgtsskdvMDMVLVTQYFDTMKeigassktnsvfiphgpgavKDIASQIREGLLQANATT
Flexible Loop (DISEMBL)
mgqalgciqvdqSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVrcetktkdnvfvNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKtlivdiepdehVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFsenvpgtsskdvmDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Low Complexity Region (SEG)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNeinaaarlrlaanekaeaekiLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Disordered region (IsUnstruct)
****LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHV*****EINAAARLRL**********IL**********SKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS**TNSVFIPHG***V******************
Disordered Region (DISOPRED)
***ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLA***********DVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR***L******
Disordered Region (DISEMBL)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Disordered Region (DISPRO)
*GQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEKTLIVDIEPDEHVKRAMNEINAAARxxxxxxxxxxxxxxxxxxxxxGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9FM19	286	Hypersensitive-induced re	yes	no	0.992	0.951	0.848	1e-139
Q9CAR7	286	Hypersensitive-induced re	no	no	0.992	0.951	0.869	1e-138
Q9SRH6	285	Hypersensitive-induced re	no	no	0.989	0.950	0.726	1e-119
Q9FHM7	292	Hypersensitive-induced re	no	no	0.974	0.914	0.571	2e-91
P16148	184	Protein PPLZ12 OS=Lupinus	N/A	no	0.580	0.864	0.6	8e-55
P72655	321	Uncharacterized protein s	N/A	no	0.886	0.757	0.235	8e-08
P0AA56	305	Protein QmcA OS=Shigella	yes	no	0.806	0.724	0.259	2e-07
P0AA53	305	Protein QmcA OS=Escherich	N/A	no	0.806	0.724	0.259	2e-07
P0AA54	305	Protein QmcA OS=Escherich	yes	no	0.806	0.724	0.259	2e-07
P0AA55	305	Protein QmcA OS=Escherich	N/A	no	0.806	0.724	0.259	2e-07

>sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/283 (84%), Positives = 258/283 (91%), Gaps = 11/283 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MG    C+QVDQSTVAIKETFGKF+DVLEPGCH LPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LD  FEQ
Sbjct: 61  KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVEEELEK           TLIVDIEPDEHVKRAMNEINAAAR+RLAANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGT++KDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 272
           QYFDTMKEIGASSK+++VFIPHGPGAV+D+ASQIR+GLLQ ++
Sbjct: 241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR7|HIR2_ARATH Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1

 Score =  490 bits (1262), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/283 (86%), Positives = 262/283 (92%), Gaps = 11/283 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAK VE ELEK           TLIVDIEPD HVKRAMNEINAA+R+R AA+EKAEA
Sbjct: 121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 272
           QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct: 241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRH6|HIR3_ARATH Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/282 (72%), Positives = 241/282 (85%), Gaps = 11/282 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MG    C+ V QS VA+KE FGKF  VL PG   +PW +G  VAG L+LR+QQLDV+CET
Sbjct: 1   MGNLFCCVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYR LA+KASDAFY+LSN  +QI+AYVFDVIRA VPKL+LD  FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAK+VEEEL+K           TLI+DIEPD+ VKRAMNEINAAAR+R+AA+EKAEA
Sbjct: 121 KNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAAARMRVAASEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKI+QIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGTS+KDV+DMV++T
Sbjct: 181 EKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAGNVPGTSAKDVLDMVMMT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQAN 271
           QYFDTM++IGA+SK+++VFIPHGPGAV D+A+QIR GLLQAN
Sbjct: 241 QYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQAN 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHM7|HIR4_ARATH Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/280 (57%), Positives = 213/280 (76%), Gaps = 13/280 (4%)

Query: 6   GCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
           GCI+  Q++V + E +G+F+ + EPGCH      G  +AG LS R++ LDV+ ETKTKDN
Sbjct: 10  GCIE--QASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIETKTKDN 67

Query: 66  VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125
           VFV +V S+QYR +   A DAFY+L N + QIQAYVFDV+RA VP + LDA FEQK ++A
Sbjct: 68  VFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVA 127

Query: 126 KAVEEELEKT-----------LIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQ 174
           K+V EELEK            L+VDI PD  V++AMNEINAA RL+LA+  K EAEKILQ
Sbjct: 128 KSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKGEAEKILQ 187

Query: 175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDT 234
           +KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS+ V GTS+K+VMD++++TQYFDT
Sbjct: 188 VKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIMITQYFDT 247

Query: 235 MKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT 274
           ++++G SSK  +VF+PHGPG V+DI+ QIR G+++A A+T
Sbjct: 248 IRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAST 287

Arabidopsis thaliana (taxid: 3702)

>sp|P16148|PLZ12_LUPPO Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1

 Score =  214 bits (544), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 134/170 (78%), Gaps = 11/170 (6%)

Query: 112 LDLDATFEQKNDIAKAVEEELEKT-----------LIVDIEPDEHVKRAMNEINAAARLR 160
           ++LD  FEQK ++AK+V EELEK            L+VDI PD+ V+RAMNEINAA R++
Sbjct: 1   MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQ 60

Query: 161 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSK 220
           LA+  K EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS  V GTS+K
Sbjct: 61  LASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAK 120

Query: 221 DVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 270
           +VMD++++TQYFDT+K++G SSK  +VFIPHGPG V+DI  QIR GL+++
Sbjct: 121 EVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMES 170

Lupinus polyphyllus (taxid: 3874)

>sp|P72655|Y1128_SYNY3 Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1128 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 33/276 (11%)

Query: 2   GQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCE 59
           G A+G     V++    + E  G ++  L PG +     L   V  Q + R + +D+  +
Sbjct: 13  GSAIGTSVKIVNEKNEYLVERLGSYNKKLTPGLNFTVPILDRVVFKQTT-REKVIDIPPQ 71

Query: 60  T-KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF 118
           +  TKDNV +   A V +R +      A+YK+ N +S +   V   IR+ + KL+LD TF
Sbjct: 72  SCITKDNVAITADAVVYWRII--DMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTF 129

Query: 119 EQKNDIAKAVEEELE-----------KTLIVDIEPDEHVKRAMNEINAAARLRLAANEKA 167
             + +I + +  EL+           +  + DI P + V  +M     A R + AA   +
Sbjct: 130 TARTEINELLLRELDISTDPWGVKVTRVELRDIMPSKAVLDSMELQMTAERKKRAAILTS 189

Query: 168 EAEKILQIKRAEGEAESKYLAGLGIARQRQAIVD-------------GLRDSVLAFSENV 214
           E ++   I  A+G+A+++ L     A+++ AI++                +++   +E +
Sbjct: 190 EGQRDSAINSAQGDAQARVLEAE--AKKKAAILNAEAEQQKKVLEAKATAEALSILTEKL 247

Query: 215 PG-TSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFI 249
                +++ +  +L  QY +    IG+S  +  +F+
Sbjct: 248 SSDNHAREALQFLLAQQYLNMGTTIGSSDSSKVMFL 283

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0AA56|QMCA_SHIFL Protein QmcA OS=Shigella flexneri GN=qmcA PE=3 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 37/258 (14%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI----AKAVEE-- 130
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I     + V+E  
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 131 -----ELEKTLIVDIEPDEHVKRAMNEINAAAR-----------LRLAANEKAEAEKILQ 174
                ++ +  I D+ P   +  +MN    A R           +R A   KAE EK  Q
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQ 207

Query: 175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDV--MDMVLVTQYF 232
           I +AEGE +S +L     AR+R A  +     ++  SE +   +S D+  ++  +  +Y 
Sbjct: 208 ILKAEGERQSAFLQAE--ARERSAEAEARATKMV--SEAI---ASGDIQAVNYFVAQKYT 260

Query: 233 DTMKEIGASSKTNSVFIP 250
           + +++IG+SS +  V +P
Sbjct: 261 EALQQIGSSSNSKVVMMP 278

Shigella flexneri (taxid: 623)

>sp|P0AA53|QMCA_ECOLI Protein QmcA OS=Escherichia coli (strain K12) GN=qmcA PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 37/258 (14%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI----AKAVEE-- 130
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I     + V+E  
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 131 -----ELEKTLIVDIEPDEHVKRAMNEINAAAR-----------LRLAANEKAEAEKILQ 174
                ++ +  I D+ P   +  +MN    A R           +R A   KAE EK  Q
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQ 207

Query: 175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDV--MDMVLVTQYF 232
           I +AEGE +S +L     AR+R A  +     ++  SE +   +S D+  ++  +  +Y 
Sbjct: 208 ILKAEGERQSAFLQAE--ARERSAEAEARATKMV--SEAI---ASGDIQAVNYFVAQKYT 260

Query: 233 DTMKEIGASSKTNSVFIP 250
           + +++IG+SS +  V +P
Sbjct: 261 EALQQIGSSSNSKVVMMP 278

Identified as a multi-copy suppressor of an FtsH/HtpX protease double disruption mutant. May play a role in the quality control of integral membrane proteins.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AA54|QMCA_ECOL6 Protein QmcA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=qmcA PE=3 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 37/258 (14%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI----AKAVEE-- 130
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I     + V+E  
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 131 -----ELEKTLIVDIEPDEHVKRAMNEINAAAR-----------LRLAANEKAEAEKILQ 174
                ++ +  I D+ P   +  +MN    A R           +R A   KAE EK  Q
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQ 207

Query: 175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDV--MDMVLVTQYF 232
           I +AEGE +S +L     AR+R A  +     ++  SE +   +S D+  ++  +  +Y 
Sbjct: 208 ILKAEGERQSAFLQAE--ARERSAEAEARATKMV--SEAI---ASGDIQAVNYFVAQKYT 260

Query: 233 DTMKEIGASSKTNSVFIP 250
           + +++IG+SS +  V +P
Sbjct: 261 EALQQIGSSSNSKVVMMP 278

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AA55|QMCA_ECO57 Protein QmcA OS=Escherichia coli O157:H7 GN=qmcA PE=3 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 37/258 (14%)

Query: 19  ETFGKFDDVLEPGCH-CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY 76
           E FG++   L+PG    +P+    ++  ++++  Q LD+   E  +KDN  V + A    
Sbjct: 32  ERFGRYTKTLQPGLSLVVPFM--DRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFI 89

Query: 77  RALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI----AKAVEE-- 130
           + +   A  A Y++SN    I       IR  +  ++LD    Q++ I     + V+E  
Sbjct: 90  QVI--DAPRAAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEAT 147

Query: 131 -----ELEKTLIVDIEPDEHVKRAMNEINAAAR-----------LRLAANEKAEAEKILQ 174
                ++ +  I D+ P   +  +MN    A R           +R A   KAE EK  Q
Sbjct: 148 NPWGIKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQ 207

Query: 175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDV--MDMVLVTQYF 232
           I +AEGE +S +L     AR+R A  +     ++  SE +   +S D+  ++  +  +Y 
Sbjct: 208 ILKAEGERQSAFLQAE--ARERSAEAEARATKMV--SEAI---ASGDIQAVNYFVAQKYT 260

Query: 233 DTMKEIGASSKTNSVFIP 250
           + +++IG+SS +  V +P
Sbjct: 261 EALQQIGSSSNSKVVMMP 278

Escherichia coli O157:H7 (taxid: 83334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255558218	285	Protein PPLZ12, putative [Ricinus commun	0.996	0.957	0.890	1e-146
449458019	284	PREDICTED: hypersensitive-induced respon	0.996	0.961	0.887	1e-146
356500513	286	PREDICTED: hypersensitive-induced respon	0.996	0.954	0.852	1e-142
225424906	286	PREDICTED: hypersensitive-induced respon	0.985	0.944	0.871	1e-140
115476296	284	Os08g0398400 [Oryza sativa Japonica Grou	0.985	0.950	0.868	1e-140
296086429	373	unnamed protein product [Vitis vinifera]	0.985	0.723	0.871	1e-140
14150732	284	hypersensitive-induced response protein	0.985	0.950	0.868	1e-140
354683205	286	hypersensitive induced reaction protein	0.996	0.954	0.855	1e-139
388518863	286	unknown [Medicago truncatula]	1.0	0.958	0.849	1e-139
217074028	286	unknown [Medicago truncatula]	1.0	0.958	0.849	1e-139

>gi|255558218|ref|XP_002520136.1| Protein PPLZ12, putative [Ricinus communis] gi|223540628|gb|EEF42191.1| Protein PPLZ12, putative [Ricinus communis]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/284 (89%), Positives = 269/284 (94%), Gaps = 11/284 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGCVQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA+DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+ FEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAADAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSAFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVE ELEK           TLIVDIEPDEHVKRAMNEINAAAR+R+AA+EKAEA
Sbjct: 121 KNDIAKAVENELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAAARMRVAASEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 273
           QYFDTMKEIGASSK++SVFIPHGPGAV+DIA+QIR+GLLQAN+T
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRDIATQIRDGLLQANST 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458019|ref|XP_004146745.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449458021|ref|XP_004146746.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|449520329|ref|XP_004167186.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 1 [Cucumis sativus] gi|449520331|ref|XP_004167187.1| PREDICTED: hypersensitive-induced response protein 1-like isoform 2 [Cucumis sativus] gi|34484310|gb|AAQ72788.1| hypersensitive-induced response protein [Cucumis sativus]

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/284 (88%), Positives = 268/284 (94%), Gaps = 11/284 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGCIQVDQSTVAI+ETFG+FDDVL+PGCHCLPWCLGSQ+AG LSLR+QQLDVRCET
Sbjct: 1   MGQALGCIQVDQSTVAIRETFGRFDDVLQPGCHCLPWCLGSQIAGHLSLRLQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALA+KASDAFYKLSNTR QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALADKASDAFYKLSNTREQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVE+ELEK           TLIVDIEPDEHVKRAMNEINAAARLR+AA EKAEA
Sbjct: 121 KNDIAKAVEDELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAATEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAF+ENVPGT+SKDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFAENVPGTTSKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 273
           QYFDTMKEIGASSK+NSVFIPHGPGAVKDIASQIR+GLLQA+ T
Sbjct: 241 QYFDTMKEIGASSKSNSVFIPHGPGAVKDIASQIRDGLLQASQT 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500513|ref|XP_003519076.1| PREDICTED: hypersensitive-induced response protein 1-like [Glycine max]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/284 (85%), Positives = 265/284 (93%), Gaps = 11/284 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQ LGC+QVDQS++AIKE FGK+DDVLEPGCHC+PWC GS+VAG LSLRV+QLDVRCET
Sbjct: 1   MGQVLGCVQVDQSSLAIKEVFGKYDDVLEPGCHCVPWCFGSRVAGALSLRVKQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKA DA+YKLSNTRSQIQ+YVFDVIRASVPK++LDATFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKAVDAYYKLSNTRSQIQSYVFDVIRASVPKMELDATFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAKAVEEELEK           TLIVDIEPDEHVKRAMNEINAAARLR+AANEKAEA
Sbjct: 121 KNEIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGT+SKD+MDMVL+T
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDIMDMVLMT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 273
           QYFDTMK+IGASSK+N+VFIPHGPGAV+D+ASQIR GLLQ NAT
Sbjct: 241 QYFDTMKDIGASSKSNAVFIPHGPGAVQDVASQIRNGLLQGNAT 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424906|ref|XP_002276517.1| PREDICTED: hypersensitive-induced response protein 1 [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/281 (87%), Positives = 258/281 (91%), Gaps = 11/281 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQA  CIQVDQS VAIKE FGKFD+VLEPGCHCLPWC GSQ+AG LSLRVQQLDVRCET
Sbjct: 1   MGQAFCCIQVDQSNVAIKEQFGKFDEVLEPGCHCLPWCFGSQLAGHLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKASDAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 61  KTKDNVFVTVVASIQYRALAEKASDAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAKAVEEELEK           TLIVDIEPDEHVKRAMNEINAA+R+RLAA EKAEA
Sbjct: 121 KNEIAKAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAASRMRLAATEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFS NVPGTSSKDVMDM+LVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSVNVPGTSSKDVMDMILVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 270
           QYFDT+K+IGASSK +SVFIPHGPGAV DIASQIR GLLQA
Sbjct: 241 QYFDTLKDIGASSKASSVFIPHGPGAVGDIASQIRVGLLQA 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476296|ref|NP_001061744.1| Os08g0398400 [Oryza sativa Japonica Group] gi|37805955|dbj|BAC99370.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|37806020|dbj|BAC99432.1| hypersensitive-induced response protein [Oryza sativa Japonica Group] gi|113623713|dbj|BAF23658.1| Os08g0398400 [Oryza sativa Japonica Group] gi|215694568|dbj|BAG89561.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640506|gb|EEE68638.1| hypothetical protein OsJ_27208 [Oryza sativa Japonica Group]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 262/281 (93%), Gaps = 11/281 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALG +QVDQSTVAIKE+FGKFD+VLEPGCH LPWC+G Q+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGLVQVDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVASVQYRALAEKASDAFY+LSNTR QIQ+YVFDVIRASVPK++LD  FEQ
Sbjct: 61  KTKDNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAKAVE+ELEK           TLIVDIEPDEHVKRAMNEINAAARLR+AANEKAEA
Sbjct: 121 KNEIAKAVEDELEKAMSMYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTS+KDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 270
           QYFDTMKEIGASSK++SVFIPHGPGAVKDIA+QIR+G LQA
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086429|emb|CBI32018.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/281 (87%), Positives = 258/281 (91%), Gaps = 11/281 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQA  CIQVDQS VAIKE FGKFD+VLEPGCHCLPWC GSQ+AG LSLRVQQLDVRCET
Sbjct: 88  MGQAFCCIQVDQSNVAIKEQFGKFDEVLEPGCHCLPWCFGSQLAGHLSLRVQQLDVRCET 147

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFV VVAS+QYRALAEKASDAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct: 148 KTKDNVFVTVVASIQYRALAEKASDAFYKLSNTRAQIQAYVFDVIRASVPKLDLDSTFEQ 207

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAKAVEEELEK           TLIVDIEPDEHVKRAMNEINAA+R+RLAA EKAEA
Sbjct: 208 KNEIAKAVEEELEKAMSAYGFEIVQTLIVDIEPDEHVKRAMNEINAASRMRLAATEKAEA 267

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFS NVPGTSSKDVMDM+LVT
Sbjct: 268 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSVNVPGTSSKDVMDMILVT 327

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 270
           QYFDT+K+IGASSK +SVFIPHGPGAV DIASQIR GLLQA
Sbjct: 328 QYFDTLKDIGASSKASSVFIPHGPGAVGDIASQIRVGLLQA 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14150732|gb|AAK54610.1|AF374475_1 hypersensitive-induced response protein [Oryza sativa] gi|125561455|gb|EAZ06903.1| hypothetical protein OsI_29142 [Oryza sativa Indica Group]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/281 (86%), Positives = 262/281 (93%), Gaps = 11/281 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALG +QVDQSTVAIKE+FGKFD+VLEPGCH LPWC+G Q+AG LSLRVQQLDVRCET
Sbjct: 1   MGQALGLVQVDQSTVAIKESFGKFDEVLEPGCHFLPWCIGKQIAGYLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVASVQYRALAEKASDAFY+LSNTR QIQ+YVFDVIRASVPK++LD  FEQ
Sbjct: 61  KTKDNVFVNVVASVQYRALAEKASDAFYRLSNTREQIQSYVFDVIRASVPKMNLDDAFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KN+IAKAVE+ELEK           TLIVDIEPDEHVKRAMNEINAAARLR+AANEKAEA
Sbjct: 121 KNEIAKAVEDELEKAMSTYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRVAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIKRAEG+AESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTS+KDVMDMVLVT
Sbjct: 181 EKILQIKRAEGDAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQA 270
           QYFDTMKEIGASSK++SVFIPHGPGAVKDIA+QIR+G LQA
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVKDIAAQIRDGQLQA 281

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|354683205|gb|AER30501.1| hypersensitive induced reaction protein 1 [Glycine max]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/284 (85%), Positives = 260/284 (91%), Gaps = 11/284 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQA GC QVDQS VAIKE FGKFDDVLEPGCHCLPWCLG Q+AG LSLRVQQLDVRCET
Sbjct: 1   MGQAFGCYQVDQSNVAIKEHFGKFDDVLEPGCHCLPWCLGYQIAGSLSLRVQQLDVRCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVASVQYRA++EKASDAFY+L+NTR QIQ+YVFDVIRASVPKL+LD+ FEQ
Sbjct: 61  KTKDNVFVNVVASVQYRAVSEKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVEEEL K           TLIVDIEPD +VKRAMNEIN AARLRLAANEKAEA
Sbjct: 121 KNDIAKAVEEELVKAMSTYGFEIVQTLIVDIEPDVNVKRAMNEINTAARLRLAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIK+AEGEAESKYL+GLGIARQRQAIVDGLRDSVLAFSENVPGTS+KDVMDMVLVT
Sbjct: 181 EKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT 273
           QYFDTMKEIGASS+++SVFIPHGPGAVKDIA QIR+GLLQA A+
Sbjct: 241 QYFDTMKEIGASSRSSSVFIPHGPGAVKDIAVQIRDGLLQATAS 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518863|gb|AFK47493.1| unknown [Medicago truncatula]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/285 (84%), Positives = 262/285 (91%), Gaps = 11/285 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQS VAIKE FGKF DVLEPGCHCLPWCLG Q+AG LSLRVQQLDV+CET
Sbjct: 1   MGQALGCVQVDQSNVAIKEHFGKFADVLEPGCHCLPWCLGYQIAGGLSLRVQQLDVKCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVASVQYRA+A+KASDAFY+L+NTR QIQ+YVFDVIRASVPKL+LDA FEQ
Sbjct: 61  KTKDNVFVNVVASVQYRAVADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAVFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVEEELEK           TLIVDIEPD +VKRAMNEINAAAR+RLAANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSMYGYQIVQTLIVDIEPDVNVKRAMNEINAAARMRLAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIK+AEGEAESKYL+GLGIARQRQAIVDGLRDSVLAFSENVPGT++KDVMDMVLVT
Sbjct: 181 EKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLVT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT 274
           QYFDTMKEIGASSK++SVFIPHGPGAV++IA QIR+GLLQ NA  
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRNIAVQIRDGLLQGNAAN 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074028|gb|ACJ85374.1| unknown [Medicago truncatula]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/285 (84%), Positives = 261/285 (91%), Gaps = 11/285 (3%)

Query: 1   MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
           MGQALGC+QVDQS VAIKE FGKF DVLEPGCHCLPWCLG Q+AG LSLRVQQLDV+CET
Sbjct: 1   MGQALGCVQVDQSNVAIKEHFGKFADVLEPGCHCLPWCLGYQIAGGLSLRVQQLDVKCET 60

Query: 61  KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
           KTKDNVFVNVVASVQYRA+A+KASDAFY+L+NTR QIQ+YVFDVIRASVPKL+LDA FEQ
Sbjct: 61  KTKDNVFVNVVASVQYRAVADKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDAVFEQ 120

Query: 121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEA 169
           KNDIAKAVEEELEK           TLIVDIEPD +VKRAMNEINAAAR+RLAANEKAEA
Sbjct: 121 KNDIAKAVEEELEKAMSMYGYQIVQTLIVDIEPDVNVKRAMNEINAAARMRLAANEKAEA 180

Query: 170 EKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
           EKILQIK+AEGEAESKYL+GLGIARQRQAIVDGLRDSVLAFSENVPGT++KDVMDMVL T
Sbjct: 181 EKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLAT 240

Query: 230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT 274
           QYFDTMKEIGASSK++SVFIPHGPGAV+DIA QIR+GLLQ NA  
Sbjct: 241 QYFDTMKEIGASSKSSSVFIPHGPGAVRDIAVQIRDGLLQGNAAN 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2196749	286	AT1G69840 [Arabidopsis thalian	0.992	0.951	0.809	8.2e-115
TAIR|locus:2170698	286	HIR1 "HYPERSENSITIVE-INDUCED R	0.992	0.951	0.777	1.3e-109
TAIR|locus:2100242	285	HIR2 "hypersensitive induced r	0.989	0.950	0.663	1e-93
TAIR|locus:2153117	292	AT5G51570 [Arabidopsis thalian	0.974	0.914	0.517	7.5e-73
UNIPROTKB|Q81JF5	321	BAS1928 "SPFH domain/Band 7 fa	0.861	0.735	0.245	2.7e-10
TIGR_CMR|BA_2075	321	BA_2075 "SPFH domain/Band 7 fa	0.861	0.735	0.245	2.7e-10
UNIPROTKB|Q602F1	309	MCA3112 "SPFH domain/Band 7 fa	0.722	0.640	0.260	8.4e-06
UNIPROTKB|Q8CX36	311	SO_4129 "Putative negative reg	0.441	0.389	0.299	1.4e-05
TIGR_CMR|SO_4129	311	SO_4129 "SPFH domain/Band 7 fa	0.441	0.389	0.299	1.4e-05
UNIPROTKB|Q5LQ79	296	SPO2617 "SPFH domain/band 7 fa	0.503	0.466	0.294	1.7e-05

TAIR|locus:2196749 AT1G69840 [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 229/283 (80%), Positives = 242/283 (85%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MGQALGCIQVDQS VAIKETFGKFD+VLEPGCHCLPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGQALGCIQVDQSNVAIKETFGKFDEVLEPGCHCLPWCLGSQVAGHLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYRALAE A DAFYKLSNTR+QIQAYVFDVIRASVPKLDLD+TFEQ
Sbjct:    61 KTKDNVFVTVVASIQYRALAESAQDAFYKLSNTRNQIQAYVFDVIRASVPKLDLDSTFEQ 120

Query:   121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXX 169
             KNDIAK VE ELEK           TLIVDIEPD HVKRAMN                  
Sbjct:   121 KNDIAKTVETELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAASRMREAASEKAEA 180

Query:   170 XXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
                LQIKRAEGEAESKYL+G+GIARQRQAIVDGLR+SVLAFSE+VPGTSSKDVMDMVLVT
Sbjct:   181 EKILQIKRAEGEAESKYLSGMGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVT 240

Query:   230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 272
             QYFDT+KEIGASSK+NSVFIPHGPGAV+DIASQIR+GLLQ N+
Sbjct:   241 QYFDTLKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQGNS 283

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2170698 HIR1 "HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
 Identities = 220/283 (77%), Positives = 237/283 (83%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MG    C+QVDQSTVAIKETFGKF+DVLEPGCH LPWCLGSQVAG LSLRVQQLDVRCET
Sbjct:     1 MGNLFCCVQVDQSTVAIKETFGKFEDVLEPGCHFLPWCLGSQVAGYLSLRVQQLDVRCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFVNVVAS+QYRALA KA+DA+YKLSNTR QIQAYVFDVIRASVPKL LD  FEQ
Sbjct:    61 KTKDNVFVNVVASIQYRALANKANDAYYKLSNTRGQIQAYVFDVIRASVPKLLLDDVFEQ 120

Query:   121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXX 169
             KNDIAKAVEEELEK           TLIVDIEPDEHVKRAMN                  
Sbjct:   121 KNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRLAANEKAEA 180

Query:   170 XXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
                LQIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGT++KDVMDMVLVT
Sbjct:   181 EKILQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLVT 240

Query:   230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANA 272
             QYFDTMKEIGASSK+++VFIPHGPGAV+D+ASQIR+GLLQ ++
Sbjct:   241 QYFDTMKEIGASSKSSAVFIPHGPGAVRDVASQIRDGLLQGSS 283

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0043424 "protein histidine kinase binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2100242 HIR2 "hypersensitive induced reaction 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 187/282 (66%), Positives = 220/282 (78%)

Query:     1 MGQALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCET 60
             MG    C+ V QS VA+KE FGKF  VL PG   +PW +G  VAG L+LR+QQLDV+CET
Sbjct:     1 MGNLFCCVLVKQSDVAVKERFGKFQKVLNPGLQFVPWVIGDYVAGTLTLRLQQLDVQCET 60

Query:    61 KTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ 120
             KTKDNVFV VVAS+QYR LA+KASDAFY+LSN  +QI+AYVFDVIRA VPKL+LD  FEQ
Sbjct:    61 KTKDNVFVTVVASIQYRVLADKASDAFYRLSNPTTQIKAYVFDVIRACVPKLNLDDVFEQ 120

Query:   121 KNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXX 169
             KN+IAK+VEEEL+K           TLI+DIEPD+ VKRAMN                  
Sbjct:   121 KNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAMNEINAAARMRVAASEKAEA 180

Query:   170 XXXLQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVT 229
                +QIKRAEGEAESKYL+GLGIARQRQAIVDGLRDSVL F+ NVPGTS+KDV+DMV++T
Sbjct:   181 EKIIQIKRAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFAGNVPGTSAKDVLDMVMMT 240

Query:   230 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQAN 271
             QYFDTM++IGA+SK+++VFIPHGPGAV D+A+QIR GLLQAN
Sbjct:   241 QYFDTMRDIGATSKSSAVFIPHGPGAVSDVAAQIRNGLLQAN 282

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2153117 AT5G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 145/280 (51%), Positives = 196/280 (70%)

Query:     6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
             GCI+  Q++V + E +G+F+ + EPGCH      G  +AG LS R++ LDV+ ETKTKDN
Sbjct:    10 GCIE--QASVGVVERWGRFEHIAEPGCHFFNPLAGQWLAGVLSTRIKSLDVKIETKTKDN 67

Query:    66 VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIA 125
             VFV +V S+QYR +   A DAFY+L N + QIQAYVFDV+RA VP + LDA FEQK ++A
Sbjct:    68 VFVQLVCSIQYRVVKASADDAFYELQNPKEQIQAYVFDVVRALVPMMTLDALFEQKGEVA 127

Query:   126 KAVEEELEKT-----------LIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQ 174
             K+V EELEK            L+VDI PD  V++AMN                     LQ
Sbjct:   128 KSVLEELEKVMGAYGYSIEHILMVDIIPDPSVRKAMNEINAAQRLQLASVYKGEAEKILQ 187

Query:   175 IKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDT 234
             +KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS+ V GTS+K+VMD++++TQYFDT
Sbjct:   188 VKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSDKVEGTSAKEVMDLIMITQYFDT 247

Query:   235 MKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANATT 274
             ++++G SSK  +VF+PHGPG V+DI+ QIR G+++A A+T
Sbjct:   248 IRDLGNSSKNTTVFLPHGPGHVRDISDQIRNGMMEAAAST 287

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q81JF5 BAS1928 "SPFH domain/Band 7 family protein" [Bacillus anthracis (taxid:1392)]

 Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 66/269 (24%), Positives = 117/269 (43%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             + Q  V + E FGKF  V++PG + L P  +  +V     LR+QQ +V  +   TKDNV 
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIP--IVDRVRVYHDLRIQQTNVPPQKVITKDNVQ 82

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK- 126
             V +   + Y+ +  +   A Y +SN    ++      +R  + K++LD T   +  I+  
Sbjct:    83 VEIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTE 140

Query:   127 ---AVEE-------ELEKTLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIK 176
                A++E        +E+  +VDI P + V+ +M                       ++ 
Sbjct:   141 IRLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVL 200

Query:   177 RAEGEAESKYLAGLGIARQRQAIVDGLRDS--------VLAFSENVPGTSSK-------D 221
             RAEGE +SK L   G    R    +G++++          A  E      ++       +
Sbjct:   201 RAEGEKQSKILMAEGDKEARIREAEGIKEAKELEAQGEARAIEEIAKAEQNRIELLREAN 260

Query:   222 VMDMVLVTQYFDTMKEIGASSKTNSVFIP 250
             + + +L  + F+++ E+ A    N VFIP
Sbjct:   261 LDERILAYKSFESLAEV-AKGPANKVFIP 288

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2075 BA_2075 "SPFH domain/Band 7 family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 66/269 (24%), Positives = 117/269 (43%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             + Q  V + E FGKF  V++PG + L P  +  +V     LR+QQ +V  +   TKDNV 
Sbjct:    25 IPQQKVGVVERFGKFQRVMQPGLNLLIP--IVDRVRVYHDLRIQQTNVPPQKVITKDNVQ 82

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK- 126
             V +   + Y+ +  +   A Y +SN    ++      +R  + K++LD T   +  I+  
Sbjct:    83 VEIDTIIFYQVVEPEL--ATYGISNYEYGVRNITSATMRQIIGKMELDETLSGREKISTE 140

Query:   127 ---AVEE-------ELEKTLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIK 176
                A++E        +E+  +VDI P + V+ +M                       ++ 
Sbjct:   141 IRLALDEATEKWGVRIERVEVVDINPPKDVQASMEKQMKAERNKRAIILEAEAAKQDKVL 200

Query:   177 RAEGEAESKYLAGLGIARQRQAIVDGLRDS--------VLAFSENVPGTSSK-------D 221
             RAEGE +SK L   G    R    +G++++          A  E      ++       +
Sbjct:   201 RAEGEKQSKILMAEGDKEARIREAEGIKEAKELEAQGEARAIEEIAKAEQNRIELLREAN 260

Query:   222 VMDMVLVTQYFDTMKEIGASSKTNSVFIP 250
             + + +L  + F+++ E+ A    N VFIP
Sbjct:   261 LDERILAYKSFESLAEV-AKGPANKVFIP 288

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q602F1 MCA3112 "SPFH domain/Band 7 family" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 127 (49.8 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 56/215 (26%), Positives = 92/215 (42%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFV 68
             V Q T    E FGK+   L PG + +   +  Q+  +L++  Q LDV   E  TKDN  V
Sbjct:    26 VPQGTEYTVERFGKYTRTLSPGINWIRPVI-DQIGARLNMMEQVLDVPSQEVITKDNAMV 84

Query:    69 NVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI-AK- 126
              V   V Y+ +   A+ A Y+++N +  I       IR  +  +DLD    ++++I A+ 
Sbjct:    85 TVNGVVFYQVV--DAARAAYEVNNLQFAIMQLTMTNIRTVMGSMDLDELLSKRDEINARL 142

Query:   127 --AVEE-------ELEKTLIVDIEPDEHVKRAMNXXXXXXXXXXXXXXXXXXXXXLQIKR 177
                V++       ++ +  I DI P + +  +M                       +I +
Sbjct:   143 LTVVDDATTPWGVKVTRIEIKDIAPPQDLVDSMARQMKAERDKRAAILEAEGHRQAEILK 202

Query:   178 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 212
             AEGE ++  L   G  R+  A  D      LA +E
Sbjct:   203 AEGEKQAMILEAEG--RREAAFRDAEARERLAEAE 235

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8CX36 SO_4129 "Putative negative regulator of univalent cation permeability" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 115 (45.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 38/127 (29%), Positives = 62/127 (48%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             V    V + E  GKF  VL+PG H L P+    +VA +   R Q LDV  ++  +KDN  
Sbjct:    22 VPMREVHVIERLGKFRTVLQPGFHFLIPFF--DRVAYRHDTREQVLDVPPQSCISKDNTQ 79

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             + V   V  + +  K   A Y + N R          +R+ + KL L  TF +++ + ++
Sbjct:    80 LEVDGLVYLKVMDGKL--ASYGIENYRKAAVNLAQTTMRSEIGKLTLSETFSERDHLNES 137

Query:   128 VEEELEK 134
             +  E++K
Sbjct:   138 IVREIDK 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_4129 SO_4129 "SPFH domain/Band 7 family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 115 (45.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 38/127 (29%), Positives = 62/127 (48%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVF 67
             V    V + E  GKF  VL+PG H L P+    +VA +   R Q LDV  ++  +KDN  
Sbjct:    22 VPMREVHVIERLGKFRTVLQPGFHFLIPFF--DRVAYRHDTREQVLDVPPQSCISKDNTQ 79

Query:    68 VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
             + V   V  + +  K   A Y + N R          +R+ + KL L  TF +++ + ++
Sbjct:    80 LEVDGLVYLKVMDGKL--ASYGIENYRKAAVNLAQTTMRSEIGKLTLSETFSERDHLNES 137

Query:   128 VEEELEK 134
             +  E++K
Sbjct:   138 IVREIDK 144

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5LQ79 SPO2617 "SPFH domain/band 7 family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 45/153 (29%), Positives = 72/153 (47%)

Query:    10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETK-TKDNVFV 68
             V QS   + E FG+   VL PG + +   L   V  ++S+  +QL    +   TKDNV V
Sbjct:    34 VPQSEKFVVERFGRLHAVLGPGINFIVPFL-DVVRHKISILERQLPTASQDAITKDNVLV 92

Query:    69 NVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-------- 120
              V  SV YR + E      Y++ +    I   V  ++RA + K+DLD             
Sbjct:    93 QVDTSVFYR-ITEPEKTV-YRIRDVDGAISTTVAGIVRAEIGKMDLDEVQSNRAQLISTI 150

Query:   121 KNDIAKAVEE---ELEKTLIVDIEPDEHVKRAM 150
             K+ +  AV++   E+ +  I+D+  D+  + AM
Sbjct:   151 KSSVEDAVDDWGIEVTRAEILDVNLDQATRDAM 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAR7	HIR2_ARATH	No assigned EC number	0.8692	0.9927	0.9510	no	no
Q9FM19	HIR1_ARATH	No assigned EC number	0.8480	0.9927	0.9510	yes	no
Q9SRH6	HIR3_ARATH	No assigned EC number	0.7269	0.9890	0.9508	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	4345499	hypersensitive-induced response protein, putative, expressed (284 aa)
		(Oryza sativa Japonica)
Predicted Functional Partners:
	4334517	remorin, putative, expressed (284 aa)							•		0.786
	4339856	lactate/malate dehydrogenase, putative, expressed (360 aa)							•		0.665
	OsJ_12952	GTP binding protein, putative, expressed (606 aa)							•		0.546

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
cd03407	262	cd03407, Band_7_4, A subgroup of the band 7 domain	1e-131
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	5e-22
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	1e-21
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	5e-20
smart00244	160	smart00244, PHB, prohibitin homologues	1e-18
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	4e-14
cd03404	266	cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma	1e-07
TIGR01933	261	TIGR01933, hflK, HflK protein	7e-05

>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  372 bits (956), Expect = e-131
 Identities = 164/264 (62%), Positives = 191/264 (72%), Gaps = 13/264 (4%)

Query: 12  QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVV 71
           QS VAI E FGKF  V  PGCH +       VAG+LSLRVQQLDVR ETKTKDNVFV VV
Sbjct: 1   QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVV 59

Query: 72  ASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEE 131
             +QYR   E A+DAFYKL N   QIQ+YVFDV+RA +PKL LD  FEQK++IAKAVEEE
Sbjct: 60  GQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEE 119

Query: 132 LEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEG 180
           L +           TLI DI+PD  VKRAMNEINAA R R+AA  KAEAEKI  IK AE 
Sbjct: 120 LREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEA 179

Query: 181 EAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA 240
           +AE+K L G+G A QRQAI DGLR+S+L+ ++ VPG ++KDVMD++LV QYFDT+K  G 
Sbjct: 180 DAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239

Query: 241 SSKTNSVFIPHGPGAVKDIASQIR 264
           SS T  VF PHGPG  +DI +QIR
Sbjct: 240 SSST-VVFRPHGPGGAQDIYAQIR 262

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 262

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 90.7 bits (226), Expect = 5e-22
 Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV-RCETKTKDNVFV 68
           V Q    + E  GK+   L PG H +      ++A ++ LR Q LDV   E  TKDNV V
Sbjct: 1   VPQYERGVVERLGKYHRTLGPGLHFI-IPFIDRIAYKVDLREQVLDVPPQEVITKDNVTV 59

Query: 69  NVVASVQYRAL-AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA 127
            V A + YR +   KA    Y + + R  I       +R+ + K++LD    ++ +I   
Sbjct: 60  RVDAVLYYRVVDPVKAV---YGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAE 116

Query: 128 VEEELEKT-----------LIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIK 176
           + E L++             I DI   + ++ AM +   A R + A   +AE E+   I 
Sbjct: 117 LVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAIL 176

Query: 177 RAEGEAESKYLAGLGIARQRQAIV 200
            AE   ++         R+ + + 
Sbjct: 177 LAEAAKQAAINPAALQLRELETLE 200

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 88.6 bits (220), Expect = 1e-21
 Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 17/179 (9%)

Query: 8   IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDV--RCETKTKDN 65
             V    V +   FGK   VL PG H         +   +  R+Q L+V       TKD 
Sbjct: 1   TIVPPGEVGVVTRFGKVSRVLGPGLHFK-LPFIQTIT-VVDTRLQTLEVTVDITVLTKDG 58

Query: 66  VFVNVVASVQYR-ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI 124
           V VNV  +VQYR     K    +    + +  ++  V   +R  + +  LD     + +I
Sbjct: 59  VPVNVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNREEI 118

Query: 125 AKAVEEELEKTL-----------IVDIEPDEHVKRAMNEINAAARLRL-AANEKAEAEK 171
           A+ V+E L++ L           I DI+P   +  A+ E  AA +    A  E+AEAE 
Sbjct: 119 AQEVKEALQEELEKYGLEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 87.1 bits (216), Expect = 5e-20
 Identities = 69/266 (25%), Positives = 114/266 (42%), Gaps = 23/266 (8%)

Query: 6   GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGS--QVAGQLSLRVQQLDVRCETK- 61
               V +    +   FG++   L EPG H       +  +V  ++ LR + LDV    + 
Sbjct: 20  SIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEV 79

Query: 62  -TKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF-E 119
            TKDNV V+V A VQYR        A Y + N  + ++  V   +R+ + ++ LD    E
Sbjct: 80  ITKDNVIVSVDAVVQYRV--TDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTE 137

Query: 120 QKNDIAKAVEEELEKTL-----------IVDIEPDEHVKRAMNEINAAARLRLAANEKAE 168
           ++ +I   + E L++             I DI+P E V+ AM +  AA R + A   +AE
Sbjct: 138 RRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAE 197

Query: 169 AEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV 228
            E    I RAEGEAE+  +       + + I     D+    +  +            L 
Sbjct: 198 GEAQAAILRAEGEAEAAIILAEA-EAEAEVIARAEADAAKIIAAALREA---PAAPQALA 253

Query: 229 TQYFDTMKEIGASSKTNSVFIPHGPG 254
            +Y + + EI  +  +  V +P+  G
Sbjct: 254 QRYLEELLEIALAGNSKVVVVPNSAG 279

Length = 291

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 18/159 (11%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCL-PWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVF 67
           V +    + E  G+   VL PG H L P+        ++ LR Q  DV   ET TKDNV 
Sbjct: 6   VGEGERGVVERLGRVLRVLGPGLHFLIPFI---DDVKKVDLRAQTDDVPPQETITKDNVK 62

Query: 68  VNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAK 126
           V+V A V YR + +     +  L    + I+      +R+ + K  LD     Q+  I++
Sbjct: 63  VSVDAVVYYR-VLDPLRAVYRVLDADYAVIEQLAQTTLRSVIGKRTLDELLTDQREKISE 121

Query: 127 AVEEEL-----------EKTLIVDIEPDEHVKRAMNEIN 154
            + EEL           E   I DI   E +K AM    
Sbjct: 122 NIREELNEAAEAWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 67.0 bits (164), Expect = 4e-14
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 16/123 (13%)

Query: 46  QLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSN--TRSQIQAYVF 102
           ++ LR Q LDV   E  TKDNV V V A VQYR        A Y + +      ++    
Sbjct: 1   RIDLRRQTLDVPPQEVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPEDEEALRQLAQ 58

Query: 103 DVIRASVPKLDLDATFEQKNDIAKAVEEELEKTL-----------IVDIEPDEHVKRAMN 151
             +R+ + K+ LD   E +++IA  V E L++ L           I DI+P E V+ AM 
Sbjct: 59  SALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAME 118

Query: 152 EIN 154
           +  
Sbjct: 119 DRQ 121

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 32/203 (15%)

Query: 9   QVDQSTVAIKETFGKFDDVLEPGCHC-LPW-----------CLGSQVAGQLSLRVQQLDV 56
            V      +   FGK+   +EPG H  LP+            L S         V+ +  
Sbjct: 17  IVQPGERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPG 76

Query: 57  RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDA 116
                T D   V+V  +VQYR       D  + + +    ++      +R  V +  LD 
Sbjct: 77  ESLMLTGDENIVDVEFAVQYRISD--PYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDD 134

Query: 117 TF-EQKNDIAKAVEEELEKTL-------------IVDIEPDEHVKRAMNEINAAA--RLR 160
              E + +IA+ V E L+  L             + D +P E V+ A +++N A   R R
Sbjct: 135 VLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRER 194

Query: 161 LAANEKAEAEKILQIKRAEGEAE 183
           L    +A A +++   +A GEA 
Sbjct: 195 LINEAEAYANEVVP--KARGEAA 215

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 266

>gnl|CDD|130988 TIGR01933, hflK, HflK protein

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 53/261 (20%), Positives = 97/261 (37%), Gaps = 38/261 (14%)

Query: 10  VDQSTVAIKETFGKFDDVLEPGCHCLP----WCLGSQVAGQLSLRVQQLDVRCETKTKDN 65
           + ++   +   FGK+   ++PG +  P          V       V+ L  +    T D 
Sbjct: 4   IGEAERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNVT-----AVRNLRKQGLMLTGDE 58

Query: 66  VFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF-EQKNDI 124
             VNV  +VQYR          + + N    ++      +R  +    +D    E ++ I
Sbjct: 59  NIVNVEMNVQYRI--TDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQI 116

Query: 125 AKAVEEELEKTL--------IVDIE-----PDEHVKRAMNEINAAARLRLAANEKAEAEK 171
            +  +E L + +        + D+      P E VK A +++  A         +AEA  
Sbjct: 117 REDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYA 176

Query: 172 ILQIKRAEGEAESKYLAGLGIARQR--QAIVDGLR-DSVLAFSENVPGTSSKDVMDMVLV 228
              + +A G+A+       G   +R  +A  D  R   +LA  +  P        D+   
Sbjct: 177 NEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAP--------DVTRE 228

Query: 229 TQYFDTMKEIGASSKTNSVFI 249
             Y +TM+++   S T  V +
Sbjct: 229 RLYLETMEKV--LSNTRKVLL 247

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PMID:8947034,PMID:96367) [SS 8/27/03]. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
KOG2621	288	consensus Prohibitins and stomatins of the PID sup	99.97
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.96
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.95
KOG3090	290	consensus Prohibitin-like protein [Posttranslation	99.92
KOG3083	271	consensus Prohibitin [Posttranslational modificati	99.89
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.8
KOG2962	322	consensus Prohibitin-related membrane protease sub	99.76
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	99.75
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.66
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.63
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.57
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.36
PTZ00491	850	major vault protein; Provisional	98.64
PF13421	211	Band_7_1: SPFH domain-Band 7 family	98.56
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	97.66
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	97.35
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	96.79
PRK11029	334	FtsH protease regulator HflC; Provisional	96.72
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	96.63
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	96.56
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	96.39
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	96.3
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	96.08
KOG2620	301	consensus Prohibitins and stomatins of the PID sup	95.97
PRK13665	316	hypothetical protein; Provisional	95.5
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	93.29
PRK10930	419	FtsH protease regulator HflK; Provisional	92.17
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	90.31
PRK01558	198	V-type ATP synthase subunit E; Provisional	90.25
PRK01558	198	V-type ATP synthase subunit E; Provisional	89.9
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	88.8
COG1580	159	FliL Flagellar basal body-associated protein [Cell	87.84
PRK02292	188	V-type ATP synthase subunit E; Provisional	83.72
PLN03086	567	PRLI-interacting factor K; Provisional	83.43
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	83.2
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	82.99
PRK01005	207	V-type ATP synthase subunit E; Provisional	82.27
PRK02292	188	V-type ATP synthase subunit E; Provisional	81.87
KOG2668	428	consensus Flotillins [Intracellular trafficking, s	81.42

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5.9e-52  Score=365.45  Aligned_cols=250  Identities=65%  Similarity=0.926  Sum_probs=236.5

Q ss_pred             CCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccchHHHHhcccc
Q 023977           12 QSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKLS   91 (274)
Q Consensus        12 ~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~   91 (274)
                      +|++|||+|||+++++++|||||++|| ++++...+++|.++++++.+++|+||++|.||++|+|||.|+.+.+++|++.
T Consensus         1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~-i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~   79 (262)
T cd03407           1 QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG   79 (262)
T ss_pred             CcEEEEEeecCcccccCCCCeEEEecc-ccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence            589999999999999999999999999 8987557999999999988889999999999999999999987668899999


Q ss_pred             ChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHH
Q 023977           92 NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLR  160 (274)
Q Consensus        92 ~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~  160 (274)
                      ++...|.+.+++++|+++|+|++++++++|++|+..|.+.+++           |.|++|+||+++.++|++++.|+|++
T Consensus        80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~  159 (262)
T cd03407          80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR  159 (262)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988           89999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023977          161 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA  240 (274)
Q Consensus       161 ~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~  240 (274)
                      ++.+.+||+++...+.+|+|++++.+++|+|+|+++.+.|+|+++++..+.++++..+.++++++++..+|+|+|+++++
T Consensus       160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~  239 (262)
T cd03407         160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR  239 (262)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998866678888999999999999999997


Q ss_pred             CCCCcEEEecCCCCchhhHHHHH
Q 023977          241 SSKTNSVFIPHGPGAVKDIASQI  263 (274)
Q Consensus       241 ~~~~~~i~l~~~~~~~~~~~~~~  263 (274)
                      +++ |++++|.+++++.+++.++
T Consensus       240 ~~~-kviv~p~~~~~~~~~~~~~  261 (262)
T cd03407         240 SSS-TVVFRPHGPGGAQDIYAQI  261 (262)
T ss_pred             CCC-CEEEecCCCccHHHHHHhc
Confidence            655 9999999999999888776

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=100.00  E-value=4.1e-50  Score=337.91  Aligned_cols=270  Identities=41%  Similarity=0.593  Sum_probs=247.2

Q ss_pred             CCCceeEEE--ecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEE
Q 023977            1 MGQALGCIQ--VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYR   77 (274)
Q Consensus         1 ~~~~~~~~~--V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yr   77 (274)
                      ||-.+||.+  ||+.+++|++||||+.++|+||+||..|+ ++++.+..+++...+..+. +..|+||+.|.+|.+++||
T Consensus         1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~-~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r   79 (301)
T KOG2620|consen    1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPV-IDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR   79 (301)
T ss_pred             CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhh-hhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence            566777766  99999999999999999999999999999 8988776776665555554 9999999999999999999


Q ss_pred             EccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHH
Q 023977           78 ALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHV  146 (274)
Q Consensus        78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i  146 (274)
                      |.||...+++|+++|++..|.+++++.+|+.+|++|+|.++..|+.++..|.++|++           ..|+||.||+.+
T Consensus        80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V  159 (301)
T KOG2620|consen   80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV  159 (301)
T ss_pred             EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence            999765569999999999999999999999999999999999999999999999998           789999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC----------
Q 023977          147 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG----------  216 (274)
Q Consensus       147 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~----------  216 (274)
                      ..||+.+.+|+|.++|++.++||+++.++.+|||++++.++.++|.+..++..+.|+++++..++++.++          
T Consensus       160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~  239 (301)
T KOG2620|consen  160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK  239 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999887654          


Q ss_pred             -CChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhhHHHHHHHHHHhhhcC
Q 023977          217 -TSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIREGLLQANAT  273 (274)
Q Consensus       217 -~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~  273 (274)
                       .+..++.+++.+.+|+.++.+++  +.++++|||++|+...++.+|.+.++.+.+..
T Consensus       240 ~~~g~~aasl~~a~qyIgaf~~la--k~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~  295 (301)
T KOG2620|consen  240 QEGGVEAASLFDAEQYIGAFGKLA--KKSNTVFLPHGPGDVRDMVAQALNGYKQLSNA  295 (301)
T ss_pred             HhcchhhHHHHHHHHHHHhhhhhc--ccCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence             23556678999999999999997  46688999999999999999999999988754

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=3.4e-47  Score=342.51  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=220.0

Q ss_pred             ceeEEEecCCceEEEEecCceee-------EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEE
Q 023977            4 ALGCIQVDQSTVAIKETFGKFDD-------VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ   75 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~~-------~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~   75 (274)
                      ++||++|++||+|||++||++.+       +++|||||++|| ++++. .+|+|.+.++.+. .++|+|++.|.||++|+
T Consensus        17 ~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPf-id~V~-~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~   94 (334)
T PRK11029         17 YMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPF-IETVK-MLDARIQTMDNQADRFVTKEKKDLIVDSYIK   94 (334)
T ss_pred             HheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCC-ceEEE-EEeeEEEEeeCCCceEEcCCCCEEEEEEEEE
Confidence            47899999999999999999987       489999999999 99984 7999999999986 89999999999999999


Q ss_pred             EEEccchHHHHhccc--cC---hHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHh----------------
Q 023977           76 YRALAEKASDAFYKL--SN---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELE----------------  133 (274)
Q Consensus        76 yrI~d~~~~~~~~~~--~~---~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~----------------  133 (274)
                      |||.||.  ++++..  .|   ....|.+.+++++|+++|+++++++++ +|++|..++++.|+                
T Consensus        95 yrI~Dp~--~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~  172 (334)
T PRK11029         95 WRISDFS--RYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD  172 (334)
T ss_pred             EEECCHH--HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            9999853  444432  23   446788999999999999999999998 79999999998877                


Q ss_pred             --------------------------h--------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023977          134 --------------------------K--------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAE  179 (274)
Q Consensus       134 --------------------------~--------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~  179 (274)
                                                .        |.|++++||+++.++|+++|.|+|++++...+|||++.+..++|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~  252 (334)
T PRK11029        173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT  252 (334)
T ss_pred             cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      2        889999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhhH
Q 023977          180 GEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDI  259 (274)
Q Consensus       180 aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~~~~~~~  259 (274)
                      |+.++.++.|+|++++++++|+|++++++.+++++.+  +|   +++.+++||++|+++++ +++++++||.+.    ++
T Consensus       253 A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~--~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~~~----~~  322 (334)
T PRK11029        253 ADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ--DP---DFYAFIRSLRAYENSFS-GNQDVMVLSPDS----DF  322 (334)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CH---HHHHHHHHHHHHHHHhc-CCCcEEEECCCh----HH
Confidence            9999999999999999999999999999999999853  33   57888999999999995 445789999863    56


Q ss_pred             HHHHH
Q 023977          260 ASQIR  264 (274)
Q Consensus       260 ~~~~~  264 (274)
                      +.-|+
T Consensus       323 ~~~l~  327 (334)
T PRK11029        323 FRYMK  327 (334)
T ss_pred             HHHhh
Confidence            66553

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=6.8e-46  Score=342.52  Aligned_cols=237  Identities=20%  Similarity=0.250  Sum_probs=211.8

Q ss_pred             ceeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecC-CCcccCCCceEEEEEEEEEEEccch
Q 023977            4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVR-CETKTKDNVFVNVVASVQYRALAEK   82 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~-~~v~T~D~~~v~v~~~v~yrI~d~~   82 (274)
                      ++|||+|+|||+|||+|||+++++++|||||++|| ++++. .++++.+....+ ..++|+|++.|.|+++|+|||.|  
T Consensus        94 ~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~Pf-Id~V~-~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D--  169 (419)
T PRK10930         94 ASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTF-IDEVK-PVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD--  169 (419)
T ss_pred             HheEEEECCCeEEEEEECCcCcceeCCceEEecCc-eEEEE-EEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC--
Confidence            47999999999999999999999999999999999 89884 688876554433 38999999999999999999998  


Q ss_pred             HHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchHHHH
Q 023977           83 ASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEHVKR  148 (274)
Q Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~i~~  148 (274)
                      +.+++|++.+++..|.+.++++||+++|+++++++++ +|++|...+++.|++             |+|++++||+++.+
T Consensus       170 p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~  249 (419)
T PRK10930        170 PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKA  249 (419)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHH
Confidence            4578899999999999999999999999999999999 799999998888876             89999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023977          149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV  228 (274)
Q Consensus       149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~  228 (274)
                      ||++++.|++++++.+++||++++..+.+|+++|++.+.+|+|++++.+++|+|+++++..++.+|..  .|+.+.   .
T Consensus       250 Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP~vtr---~  324 (419)
T PRK10930        250 AFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA--APEITR---E  324 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CHHHHH---H
Confidence            99999999999999999999999999999999999999999999999999999999998888888864  666544   4


Q ss_pred             HHHHHHHHHHhcCCCCcEEEecC
Q 023977          229 TQYFDTMKEIGASSKTNSVFIPH  251 (274)
Q Consensus       229 ~~~le~l~~~~~~~~~~~i~l~~  251 (274)
                      ..|||+|+++++  +.+.++++.
T Consensus       325 RlYletme~vl~--~~~kvivd~  345 (419)
T PRK10930        325 RLYIETMEKVLG--HTRKVLVND  345 (419)
T ss_pred             HHHHHHHHHHHc--cCCEEEEeC
Confidence            569999999995  333344544

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=1.6e-45  Score=324.60  Aligned_cols=237  Identities=17%  Similarity=0.216  Sum_probs=214.1

Q ss_pred             EEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHH
Q 023977            7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD   85 (274)
Q Consensus         7 ~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~   85 (274)
                      ||+|+|||+||+++||++.++++||+||++|| ++++ +.++++.+....+. .++|+||+.|.|+++++|||.||  .+
T Consensus         1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~-i~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~--~~   76 (261)
T TIGR01933         1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPF-IEEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDP--YK   76 (261)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCcceEECCC-ceEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCH--HH
Confidence            58999999999999999999999999999999 8888 47888764432333 68999999999999999999984  56


Q ss_pred             HhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchHHHHHhH
Q 023977           86 AFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEHVKRAMN  151 (274)
Q Consensus        86 ~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~i~~ai~  151 (274)
                      ++|++.+++..|.+.+++++|+++|+++++++++ +|++|+..|.+.|++             |.|++|+||+++.++|+
T Consensus        77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~  156 (261)
T TIGR01933        77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD  156 (261)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence            8899999999999999999999999999999999 999999999988876             88999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 023977          152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQY  231 (274)
Q Consensus       152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~  231 (274)
                      +++.|++++++.+.+||++++..+.+|++++++.++.|+|+++++.++|+|+++++..+++++..  +|   +++.+++|
T Consensus       157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~  231 (261)
T TIGR01933       157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLY  231 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999853  44   56677889


Q ss_pred             HHHHHHHhcCCCCcEEEecCCC
Q 023977          232 FDTMKEIGASSKTNSVFIPHGP  253 (274)
Q Consensus       232 le~l~~~~~~~~~~~i~l~~~~  253 (274)
                      |++|+++++ +++++++++.+.
T Consensus       232 le~~~~~~~-~~~~~~~~~~~~  252 (261)
T TIGR01933       232 LETMEKVLS-NTRKVLLDDKKG  252 (261)
T ss_pred             HHHHHHHHc-cCCeEEEECCCC
Confidence            999999994 556778887653

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=1.6e-45  Score=332.10  Aligned_cols=240  Identities=13%  Similarity=0.150  Sum_probs=211.5

Q ss_pred             ceeEEEecCCceEEEEecCceeeEe-------CCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEE
Q 023977            4 ALGCIQVDQSTVAIKETFGKFDDVL-------EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQ   75 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~~~l-------~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~   75 (274)
                      ++||++|+|||+||+++||++.++.       +|||||++|| ++++ +.+|+|.++++.+. +++|+||++|.||++++
T Consensus        17 ~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~-i~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~   94 (317)
T TIGR01932        17 FQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPF-IEHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIR   94 (317)
T ss_pred             HheEEEECCCeEEEEEecCceeccccccccccCCCeEEEecc-ccEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEEE
Confidence            4799999999999999999998654       7999999999 8888 47999999999876 89999999999999999


Q ss_pred             EEEccchHHHHhcccc--C---hHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHH-------------------------
Q 023977           76 YRALAEKASDAFYKLS--N---TRSQIQAYVFDVIRASVPKLDLDATFE-QKNDI-------------------------  124 (274)
Q Consensus        76 yrI~d~~~~~~~~~~~--~---~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i-------------------------  124 (274)
                      |||.|+  .++++++.  +   ++..|.+.+++++|+++|+|+++++++ +|++|                         
T Consensus        95 yrV~d~--~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~  172 (317)
T TIGR01932        95 WRIEDF--KKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKG  172 (317)
T ss_pred             EEECCH--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchh
Confidence            999984  45666543  3   466799999999999999999999998 56666                         


Q ss_pred             ----HHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhc
Q 023977          125 ----AKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAG  189 (274)
Q Consensus       125 ----~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~A  189 (274)
                          ...|++.+.+           |.|++++||+++.++|++++.|+|++++...++||++.+..++|+|++++.++.|
T Consensus       173 r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~a  252 (317)
T TIGR01932       173 REILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILS  252 (317)
T ss_pred             hhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3455555553           8999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCcEEEecCCC
Q 023977          190 LGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGP  253 (274)
Q Consensus       190 ea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~~i~l~~~~  253 (274)
                      +|++++..++|+|++++++.+++++.+  +|   +++.+++||++|+++++ ++++++++|.+.
T Consensus       253 eA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~~~~~~le~~~~~~~-~~~~~~vl~~~~  310 (317)
T TIGR01932       253 EAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFYSFWRSLEAYEKSFK-DNQDEKVLSTDS  310 (317)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHHHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence            999999999999999999999999864  45   45667889999999995 456789998873

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=3.7e-44  Score=312.47  Aligned_cols=223  Identities=19%  Similarity=0.220  Sum_probs=203.4

Q ss_pred             EEEecCCceEEEEecCceee-EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHH
Q 023977            7 CIQVDQSTVAIKETFGKFDD-VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS   84 (274)
Q Consensus         7 ~~~V~~ge~gVv~~fGk~~~-~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~   84 (274)
                      ||+|+|||+||+++||++.+ +++||+||++|| ++++ +.+|+|.+.++.+. .++|+|+++|.+++++.|||.||  .
T Consensus         1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~-i~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~   76 (242)
T cd03405           1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPF-IQQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L   76 (242)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCCCeeEEcCC-cceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence            68999999999999999987 689999999999 7887 57999999998876 89999999999999999999985  4


Q ss_pred             HHhccccCh----HHHHHHHHHHHHHHHcCCCCHHHHhcC-HHHHHHHHHHHHhh-----------ccccccccchHHHH
Q 023977           85 DAFYKLSNT----RSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEK-----------TLIVDIEPDEHVKR  148 (274)
Q Consensus        85 ~~~~~~~~~----~~~l~~~~~~~lR~~i~~~t~~el~~~-R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~  148 (274)
                      ++++.+.++    +..|.+.+++.+|+++|++++++++++ |++|.+.+++.|++           |.|++|.||+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~  156 (242)
T cd03405          77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE  156 (242)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence            566655543    367899999999999999999999996 99999999999887           88999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023977          149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLV  228 (274)
Q Consensus       149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~  228 (274)
                      +|++++.|+|++++++.+|||++++.+++|++++++.++.|+|+|++.+++|+|++++++.+++++..  +|+   ++.+
T Consensus       157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~  231 (242)
T cd03405         157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAF  231 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999864  564   5667


Q ss_pred             HHHHHHHHHH
Q 023977          229 TQYFDTMKEI  238 (274)
Q Consensus       229 ~~~le~l~~~  238 (274)
                      +++|++|+.+
T Consensus       232 ~~~l~~~~~~  241 (242)
T cd03405         232 YRSLEAYRNS  241 (242)
T ss_pred             HHHHHHHHhh
Confidence            8899999875

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=4.7e-43  Score=309.70  Aligned_cols=228  Identities=22%  Similarity=0.258  Sum_probs=201.4

Q ss_pred             ceeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEE----------Ee--ecC-CCcccCCCceEEE
Q 023977            4 ALGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ----------QL--DVR-CETKTKDNVFVNV   70 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~----------~~--~~~-~~v~T~D~~~v~v   70 (274)
                      ++||++|+|||+|||++||+++++++||+||++|| ++++...++++.+          ..  ..+ ..++|+||++|.+
T Consensus        12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v   90 (266)
T cd03404          12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPY-PIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV   90 (266)
T ss_pred             HcEEEEECCCceEEeEEcCccccccCCceeEecCC-CcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence            47899999999999999999999999999999999 6665333433211          11  112 2689999999999


Q ss_pred             EEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcC-HHHHHHHHHHHHhh-------------cc
Q 023977           71 VASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQ-KNDIAKAVEEELEK-------------TL  136 (274)
Q Consensus        71 ~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~-R~~i~~~i~~~l~~-------------v~  136 (274)
                      |+++.|||.|+  .+++|+..+++..|.+.+++++|+++|+|++++++++ |+++.+.|++.+++             |.
T Consensus        91 d~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~  168 (266)
T cd03404          91 EFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN  168 (266)
T ss_pred             EEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence            99999999985  4678888999999999999999999999999999995 99999999998866             88


Q ss_pred             ccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 023977          137 IVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG  216 (274)
Q Consensus       137 I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~  216 (274)
                      |++++||+++.++|++++.|++++++.+.+||+++++.+.+|+++|++.++.|+|++++..++|+|+++++..+++++..
T Consensus       169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~  248 (266)
T cd03404         169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK  248 (266)
T ss_pred             EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             CChhhhHHHHHHHHHHHHHHHHh
Q 023977          217 TSSKDVMDMVLVTQYFDTMKEIG  239 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~le~l~~~~  239 (274)
                        +|+   .+.++.|+++|.+++
T Consensus       249 --~~~---~~~~~~~~~~~~~~~  266 (266)
T cd03404         249 --APD---VTRERLYLETMEEVL  266 (266)
T ss_pred             --ChH---HHHHHHHHHHHHHhC
Confidence              554   445677999999864

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-39  Score=288.07  Aligned_cols=246  Identities=28%  Similarity=0.389  Sum_probs=216.9

Q ss_pred             ceeEEEecCCceEEEEecCceeeEeC-CcceeecCCC--cceeeEeeceeEEEeec-CC-CcccCCCceEEEEEEEEEEE
Q 023977            4 ALGCIQVDQSTVAIKETFGKFDDVLE-PGCHCLPWCL--GSQVAGQLSLRVQQLDV-RC-ETKTKDNVFVNVVASVQYRA   78 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~~~l~-pGl~~~~P~~--i~~v~~~~~~r~~~~~~-~~-~v~T~D~~~v~v~~~v~yrI   78 (274)
                      ++++++|+|++.+++.+||++.+.++ ||+||++||+  +..+...++.+.++++. ++ .++|+|++.|.||++++|||
T Consensus        18 ~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv   97 (291)
T COG0330          18 FSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRV   97 (291)
T ss_pred             HceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEE
Confidence            46899999999999999999999999 9999999994  12222468888899999 66 89999999999999999999


Q ss_pred             ccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHH-HHHHHHHHHHhh-----------ccccccccchHH
Q 023977           79 LAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEEELEK-----------TLIVDIEPDEHV  146 (274)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~-~i~~~i~~~l~~-----------v~I~~i~~p~~i  146 (274)
                      .|+.  +++|++.+++..+.+.+++.+|+++|++++++++++|. .++..+.+.|++           |+|++++||+++
T Consensus        98 ~d~~--~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev  175 (291)
T COG0330          98 TDPQ--KAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEV  175 (291)
T ss_pred             cCHH--HHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHH
Confidence            9954  78899999999999999999999999999999999777 999999999998           999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023977          147 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV  226 (274)
Q Consensus       147 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~  226 (274)
                      ..+|+++|.|++++++.+.+||+++++.+.+|+|++++.++.|+|++.+ ...++|++++.+.+++++.+   ....+++
T Consensus       176 ~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~~  251 (291)
T COG0330         176 QAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQA  251 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhHH
Confidence            9999999999999999999999999999999999999999999999988 44455555577888887653   2334788


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 023977          227 LVTQYFDTMKEIGASSKTNSVFIPHGPGA  255 (274)
Q Consensus       227 ~~~~~le~l~~~~~~~~~~~i~l~~~~~~  255 (274)
                      .+++|++.+.+...+++++++++|.+.++
T Consensus       252 ~~~r~~~~~~~~~~~~~~~~v~~p~~~~~  280 (291)
T COG0330         252 LAQRYLEELLEIALAGNSKVVVVPNSAGG  280 (291)
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence            89999999999987667888888987554

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=4.1e-37  Score=263.55  Aligned_cols=202  Identities=29%  Similarity=0.364  Sum_probs=168.5

Q ss_pred             ecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhc
Q 023977           10 VDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFY   88 (274)
Q Consensus        10 V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~   88 (274)
                      |+|||+||+++||++.++++||+||++|| ++++.+.+|+|.+.++++. .+.|+|+++|.+++++.|||.||  .++++
T Consensus         1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~-~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~~~~~   77 (215)
T cd03403           1 VPQYERGVVERLGKYHRTLGPGLHFIIPF-IDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDP--VKAVY   77 (215)
T ss_pred             CCcceEEEEEEcCcCccccCCcEEEEecc-ceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecH--HHHHh
Confidence            78999999999999999999999999999 8887246999999999977 79999999999999999999884  46778


Q ss_pred             cccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHH
Q 023977           89 KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAA  157 (274)
Q Consensus        89 ~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae  157 (274)
                      .+.+++..|.+.+++++|+++|++++++++++|++|++.|++.|++           |.|++++||+++.++|++++.|+
T Consensus        78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~  157 (215)
T cd03403          78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE  157 (215)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999887           88999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 023977          158 RLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKE  237 (274)
Q Consensus       158 ~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~  237 (274)
                      +++++.+.+|||++++.++.|+|+++...                                +    ...+.++++|+++.
T Consensus       158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~~--------------------------------~----~~~~~~~~~e~~~~  201 (215)
T cd03403         158 REKRAKIIEAEGERQAAILLAEAAKQAAI--------------------------------N----PAALQLRELETLEE  201 (215)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHcc--------------------------------C----HHHHHHHHHHHHHH
Confidence            87776655555554443333333332221                                1    23445789999999


Q ss_pred             HhcCCCCcEEEec
Q 023977          238 IGASSKTNSVFIP  250 (274)
Q Consensus       238 ~~~~~~~~~i~l~  250 (274)
                      ++++.+.++++.|
T Consensus       202 ~~~~~~~~~~~~~  214 (215)
T cd03403         202 IAKEAASTVVFPA  214 (215)
T ss_pred             HHhccCCeEEeeC
Confidence            9987765555544

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=7.9e-35  Score=256.45  Aligned_cols=182  Identities=15%  Similarity=0.180  Sum_probs=158.8

Q ss_pred             ceeEEEecCCceEEEEecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEE-EEEEEcc
Q 023977            4 ALGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVAS-VQYRALA   80 (274)
Q Consensus         4 ~~~~~~V~~ge~gVv~~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~-v~yrI~d   80 (274)
                      ++|+++|++||+||++|||++. .+++|||||++|| ++++. .++++.++.+.+. .+.|+||+.|.+|.. +.|++++
T Consensus         2 ~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPf-Id~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp   79 (280)
T cd03406           2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP   79 (280)
T ss_pred             CceEEEECCCeEEEEEECCcccccccCCceEEecCC-ceEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence            5799999999999999999985 6789999999999 89884 5899998888764 889999999999965 5555554


Q ss_pred             chHHHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccch
Q 023977           81 EKASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDE  144 (274)
Q Consensus        81 ~~~~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~  144 (274)
                      ...+..+  |+.++....|.+.+++.+|+++|+++++++++ +|+++...+++.|++             |.|++++||+
T Consensus        80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~  159 (280)
T cd03406          80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE  159 (280)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence            3444444  45566788899999999999999999999999 899999999988877             8899999999


Q ss_pred             HHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023977          145 HVKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKYLA  188 (274)
Q Consensus       145 ~i~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~A~aeae~~~~~  188 (274)
                      ++.++| ++|.|||++.        +.+.+||+++.+.++.|+++|+-..+.
T Consensus       160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~  210 (280)
T cd03406         160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL  210 (280)
T ss_pred             HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence            999998 6999999999        999999999999999999999866543

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=8.1e-35  Score=245.89  Aligned_cols=179  Identities=17%  Similarity=0.207  Sum_probs=148.6

Q ss_pred             eEEEecCCceEEEEecCceee--EeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccchH
Q 023977            6 GCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKA   83 (274)
Q Consensus         6 ~~~~V~~ge~gVv~~fGk~~~--~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~   83 (274)
                      ||++|++|++||+++||+...  +++||+||++|| ++++ +.+|++.+.++++..+.|+|++.|.++++++|++.++.+
T Consensus         1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~-~~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~   78 (196)
T cd03401           1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPW-FQKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL   78 (196)
T ss_pred             CEEEECCCcEEEEEEecCccccCccCCceEEEccc-ccee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence            689999999999999998764  899999999999 8888 479999999988888899999999999999999976443


Q ss_pred             HHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHh
Q 023977           84 SDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAM  150 (274)
Q Consensus        84 ~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai  150 (274)
                      ...+  ++.+..+..|.+.+++.+|+++|+|+++|++++|++|++.|++.|++           |.|++|+||+++.++|
T Consensus        79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai  158 (196)
T cd03401          79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV  158 (196)
T ss_pred             HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence            3332  23233456799999999999999999999999999999999999887           8999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHH
Q 023977          151 NEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR  194 (274)
Q Consensus       151 ~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~  194 (274)
                      ++++.|+++.+++.        ..+.+|+++|++.+++|+|+|+
T Consensus       159 ~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~  194 (196)
T cd03401         159 EAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAE  194 (196)
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhh
Confidence            99999998865532        2344556666666666555554

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.6e-33  Score=241.16  Aligned_cols=159  Identities=14%  Similarity=0.283  Sum_probs=146.3

Q ss_pred             eEEEecCCceEEEEecCceeeEe-CCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH
Q 023977            6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA   83 (274)
Q Consensus         6 ~~~~V~~ge~gVv~~fGk~~~~l-~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~   83 (274)
                      |||+|+|||.||+++||++.+++ +|||||++|| ++.  .++|+|.+.++.+. .+.|+||++|.++++++|||.|  +
T Consensus         1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~-~~~--~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p   75 (219)
T cd03402           1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPF-SSK--KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T   75 (219)
T ss_pred             CeEEECCCeeEEEEEcCcCcccccCCceEEEecc-ceE--EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence            68999999999999999999875 9999999999 665  36999999999987 7999999999999999999999  4


Q ss_pred             HHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-------CHHHHHHHHHHHHhh-----------ccccccccchH
Q 023977           84 SDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-------QKNDIAKAVEEELEK-----------TLIVDIEPDEH  145 (274)
Q Consensus        84 ~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-------~R~~i~~~i~~~l~~-----------v~I~~i~~p~~  145 (274)
                      .+++|++.|++..|.+.+++++|+++|+|+++++++       +|++|+.++++.+++           |+|+++.||++
T Consensus        76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e  155 (219)
T cd03402          76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE  155 (219)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence            578899999999999999999999999999999985       579999999999988           89999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH
Q 023977          146 VKRAMNEINAAARLRLAANEKAEA  169 (274)
Q Consensus       146 i~~ai~~~~~Ae~~~~a~~~~Ae~  169 (274)
                      +.+||+++|.|+++..|....++|
T Consensus       156 i~~am~~R~~Ae~~~~Ar~~~~~G  179 (219)
T cd03402         156 IAQAMLQRQQASAIIAARRKIVEG  179 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999988887766665

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=99.97  E-value=7.8e-32  Score=229.96  Aligned_cols=211  Identities=23%  Similarity=0.271  Sum_probs=172.6

Q ss_pred             CCceeEEEecCCceEEEEecCceee--EeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEE
Q 023977            2 GQALGCIQVDQSTVAIKETFGKFDD--VLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRA   78 (274)
Q Consensus         2 ~~~~~~~~V~~ge~gVv~~fGk~~~--~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI   78 (274)
                      ..|+|+++|++.|++||.|+|+...  .-|||+.|++|| ||+. .++|+|++.+++|+ +++|+|.+.|+||++|+|||
T Consensus        50 S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPC-IDt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri  127 (288)
T KOG2621|consen   50 SIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPC-IDTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRI  127 (288)
T ss_pred             HHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecc-ccee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEe
Confidence            3578999999999999999999874  669999999999 9998 48999999999998 99999999999999999999


Q ss_pred             ccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHH
Q 023977           79 LAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVK  147 (274)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~  147 (274)
                      .|  +..++.+++|.+...+-+.++.||+++|+.++.|++++|+.++.+++..|++           |+|+||.+|.+.+
T Consensus       128 ~d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlq  205 (288)
T KOG2621|consen  128 SD--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQ  205 (288)
T ss_pred             cC--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhh
Confidence            99  4567889999999999999999999999999999999999999999999998           9999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHH
Q 023977          148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVL  227 (274)
Q Consensus       148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~  227 (274)
                      .++....+|.|++.|.+..|||+                      ..+-.    +.+++...++      .+|.+    +
T Consensus       206 ramaaeAeA~reA~Akviaaege----------------------~~as~----al~~aa~v~~------~sp~a----l  249 (288)
T KOG2621|consen  206 RAMAAEAEATREARAKVIAAEGE----------------------KKASE----ALKEAADVIS------ESPIA----L  249 (288)
T ss_pred             hhhhchhhhhhhhhhhHHHHHhh----------------------hHHHH----HHHHhhcccc------CCchh----h
Confidence            99876555555444444444433                      22221    2222222222      24444    3


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecCCC
Q 023977          228 VTQYFDTMKEIGASSKTNSVFIPHGP  253 (274)
Q Consensus       228 ~~~~le~l~~~~~~~~~~~i~l~~~~  253 (274)
                      .++||+++..++. .+++++++|...
T Consensus       250 qLryLqtl~sia~-e~~~tivfP~p~  274 (288)
T KOG2621|consen  250 QLRYLQTLNSIAA-EKNSTIVFPLPI  274 (288)
T ss_pred             hhhhhhcchhhhc-CCCCCcccCCCH
Confidence            4689999999985 566888999753

>smart00244 PHB prohibitin homologues

Probab=99.96  E-value=4.1e-28  Score=197.66  Aligned_cols=145  Identities=31%  Similarity=0.410  Sum_probs=133.1

Q ss_pred             eeEEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH
Q 023977            5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA   83 (274)
Q Consensus         5 ~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~   83 (274)
                      +||++|+|||+||+++||++.++++||+||++|| ++++ +.++++.+.++.+. .+.|+|++++.+++++.|||.|+. 
T Consensus         1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~-   77 (160)
T smart00244        1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPF-IDRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPL-   77 (160)
T ss_pred             CcEEEEcccEEEEEEecCccccccCCCEEEEecc-eeEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHH-
Confidence            5899999999999999999999999999999999 7887 47999999998877 889999999999999999999854 


Q ss_pred             HHHhccccChH-HHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-----------ccccccccchHHHHHh
Q 023977           84 SDAFYKLSNTR-SQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAM  150 (274)
Q Consensus        84 ~~~~~~~~~~~-~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai  150 (274)
                       +++++..+++ ..|.+.+++++|+++++++++++++ +|+++.+.+++.|++           |.|+++.+|+++.++|
T Consensus        78 -~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai  156 (160)
T smart00244       78 -KAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM  156 (160)
T ss_pred             -HHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence             5677777777 5899999999999999999999999 799999999999887           8999999999999999


Q ss_pred             HHH
Q 023977          151 NEI  153 (274)
Q Consensus       151 ~~~  153 (274)
                      +++
T Consensus       157 ~~k  159 (160)
T smart00244      157 EQQ  159 (160)
T ss_pred             Hhh
Confidence            865

prohibitin homologues

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.95  E-value=6.5e-28  Score=199.92  Aligned_cols=159  Identities=29%  Similarity=0.404  Sum_probs=104.1

Q ss_pred             EEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC---CcccCCCceEEEEEEEEEEEccchHH
Q 023977            8 IQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC---ETKTKDNVFVNVVASVQYRALAEKAS   84 (274)
Q Consensus         8 ~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~---~v~T~D~~~v~v~~~v~yrI~d~~~~   84 (274)
                      |+|+|||+||+++||++..+++||+||++|| ++++ +.++++.++++++.   .+.|+|+.++.+++++.|||.++.  
T Consensus         1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~--   76 (179)
T PF01145_consen    1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPF-IQKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPP--   76 (179)
T ss_dssp             --------------------------------EEE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CC--
T ss_pred             CEeCCCEEEEEEECCeEeEEECCCeEEEeCC-cCeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHH--
Confidence            5899999999999999999999999999998 8887 47999999999887   899999999999999999997643  


Q ss_pred             HHhccc----cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHH
Q 023977           85 DAFYKL----SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRA  149 (274)
Q Consensus        85 ~~~~~~----~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~a  149 (274)
                      .++..+    .+++..|++.+++++|+++++|++++++++|.++.+.+++.|++           |.|.++.+|+++.++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~  156 (179)
T PF01145_consen   77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA  156 (179)
T ss_dssp             CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred             HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence            445455    67889999999999999999999999999999999999999987           889999999999999


Q ss_pred             hHHHHHHHHHH-HHHHHHHHHH
Q 023977          150 MNEINAAARLR-LAANEKAEAE  170 (274)
Q Consensus       150 i~~~~~Ae~~~-~a~~~~Ae~~  170 (274)
                      |.+++.|++++ ++++.+||++
T Consensus       157 i~~~~~a~~~~~~~~~~~a~~e  178 (179)
T PF01145_consen  157 IEEKQRAEQEAQQAEIERAEAE  178 (179)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999887 5655555544

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.1e-24  Score=178.56  Aligned_cols=223  Identities=18%  Similarity=0.252  Sum_probs=167.8

Q ss_pred             CceeEEEecCCceEEEE-ecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEcc
Q 023977            3 QALGCIQVDQSTVAIKE-TFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALA   80 (274)
Q Consensus         3 ~~~~~~~V~~ge~gVv~-~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d   80 (274)
                      ...|+|.|+-||++|++ |+|-+. +++..|+||.+|| +++-. .+|+|.++..+....-|+|-+.|++...|.-|-..
T Consensus        34 v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPw-fe~pI-iYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~~  111 (290)
T KOG3090|consen   34 VTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPW-FERPI-IYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPMA  111 (290)
T ss_pred             ecceeEeecCCceEEEEeccccchhccccCCceEeeec-cccce-eeeeccCcccccCCCCCcceeEEEeeeEEecCCCh
Confidence            34689999999999986 677665 7889999999999 77753 58999999888888999999999999988877764


Q ss_pred             chHHHHhc--cccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHH
Q 023977           81 EKASDAFY--KLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVK  147 (274)
Q Consensus        81 ~~~~~~~~--~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~  147 (274)
                      ......+.  +.+..+..|.+++++.|++++++|+..++++.|+.++..|++.|.+           |.|+.++|.+++.
T Consensus       112 ~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efT  191 (290)
T KOG3090|consen  112 DQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFT  191 (290)
T ss_pred             hhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHH
Confidence            33332222  2233456789999999999999999999999999999999999987           8899999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHH
Q 023977          148 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVL  227 (274)
Q Consensus       148 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~  227 (274)
                      .|++.++.|.|+++.+.+        -+.+|+.|.+.++.+|+|||++.+..++|.+.             +|    .++
T Consensus       192 aAiEaKQvA~QeAqRA~F--------~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n~----~fi  246 (290)
T KOG3090|consen  192 AAIEAKQVAAQEAQRAKF--------IVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------NP----AFI  246 (290)
T ss_pred             HHHHHHHHHHHHHhhhhh--------hhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------Cc----cce
Confidence            999999999998876543        22334444444444444444444444444332             34    345


Q ss_pred             HHHHHHHHHHHhc--CCCCcEEEecCC
Q 023977          228 VTQYFDTMKEIGA--SSKTNSVFIPHG  252 (274)
Q Consensus       228 ~~~~le~l~~~~~--~~~~~~i~l~~~  252 (274)
                      .+|-+++-++++.  +.+.+.++|+.+
T Consensus       247 ~Lrki~aAr~IA~tia~S~NkvyL~~~  273 (290)
T KOG3090|consen  247 TLRKIEAAREIAQTIASSANKVYLSSD  273 (290)
T ss_pred             eehhHHHHHHHHHHHhcCCCeEEeccc
Confidence            5678888887764  244566788765

>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=6.2e-23  Score=169.77  Aligned_cols=221  Identities=19%  Similarity=0.270  Sum_probs=170.2

Q ss_pred             eeEEEecCCceEEEE-ec-CceeeEeCCcceeecCCCcceeeEeeceeEEEeecCCCcccCCCceEEEEEEEEEEEccch
Q 023977            5 LGCIQVDQSTVAIKE-TF-GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEK   82 (274)
Q Consensus         5 ~~~~~V~~ge~gVv~-~f-Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~   82 (274)
                      +++|.|+-||++|+. || |....+.+.|-||.+|| .++- ..+|.|.++.+++...-|||-++|++...+.||-..+.
T Consensus        25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw-~qk~-~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq  102 (271)
T KOG3083|consen   25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPW-VQKP-IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ  102 (271)
T ss_pred             hhhcccCCCceeEEeecccchhhhcccCCceeeeee-ccCc-EEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence            578999999999985 56 44447789999999999 6665 36888888888888889999999999999999876544


Q ss_pred             HHHHhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHH
Q 023977           83 ASDAFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRA  149 (274)
Q Consensus        83 ~~~~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~a  149 (274)
                      ....|.+.  +..+..|.++....|++++++++..|+++.|+.++..+.+.|.+           |.|+.++|-+++.+|
T Consensus       103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A  182 (271)
T KOG3083|consen  103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA  182 (271)
T ss_pred             cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence            43444333  44456788999999999999999999999999999999988877           888899999999999


Q ss_pred             hHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023977          150 MNEINAAARLRLAAN---EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV  226 (274)
Q Consensus       150 i~~~~~Ae~~~~a~~---~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~  226 (274)
                      ++.++.|+|+++.+.   .+||.++++.+++||||++++.+.++           +.+.+            +..    +
T Consensus       183 vE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~-----------sla~a------------G~g----L  235 (271)
T KOG3083|consen  183 VEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIAN-----------SLATA------------GDG----L  235 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHH-----------HHhhc------------CCc----e
Confidence            999999999988654   36666776666666666666655443           22221            222    3


Q ss_pred             HHHHHHHHHHHHhc--CCCCcEEEecCCCC
Q 023977          227 LVTQYFDTMKEIGA--SSKTNSVFIPHGPG  254 (274)
Q Consensus       227 ~~~~~le~l~~~~~--~~~~~~i~l~~~~~  254 (274)
                      +..+.+|+-++++.  +.+.++.++|.+.+
T Consensus       236 ielrrlEAa~dia~~Ls~s~nv~YLp~g~s  265 (271)
T KOG3083|consen  236 IELRRLEAAEDIAYQLSRSRNVTYLPAGQS  265 (271)
T ss_pred             eeehhhhhHHHHHHHHhcCCCceeccCCcc
Confidence            33567777777653  35678889997643

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.80  E-value=7.6e-19  Score=149.42  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=118.4

Q ss_pred             eeEEEecCCceEEEEecCceeeEeCCcceeecCC--C-cc---------------eeeEeeceeEEEeec-------CCC
Q 023977            5 LGCIQVDQSTVAIKETFGKFDDVLEPGCHCLPWC--L-GS---------------QVAGQLSLRVQQLDV-------RCE   59 (274)
Q Consensus         5 ~~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~--~-i~---------------~v~~~~~~r~~~~~~-------~~~   59 (274)
                      .|.++|++||.+|++++|++.++++||.|+.+|+  | +.               .+ +.++.+.+....       ...
T Consensus        14 ~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T cd03408          14 GSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFGR   92 (207)
T ss_pred             CCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeeee
Confidence            4789999999999999999999999987766542  1 22               23 357777765532       124


Q ss_pred             cccCCCceEEEEEEEEEEEccchHHHHhccc---------cChHHHHHHHHHHHHHHHcCCCCHHHHhcC--HHHHHHHH
Q 023977           60 TKTKDNVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVPKLDLDATFEQ--KNDIAKAV  128 (274)
Q Consensus        60 v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lR~~i~~~t~~el~~~--R~~i~~~i  128 (274)
                      ..|+|+++|.+++++.|||.||.  +++.++         .+....|.+.+++++|+++|++++++++.+  |++|++.+
T Consensus        93 ~~~~~~v~v~v~~~~~~kI~Dp~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v  170 (207)
T cd03408          93 DSEFGGVPLRAFGTYSLKVTDPV--LFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV  170 (207)
T ss_pred             CCccceEEEEeeEEEEEEEcCHH--HHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence            57889999999999999999853  555443         235678999999999999999999999996  99999999


Q ss_pred             HHHHhh-----------ccccccccchHHHHHhHHH
Q 023977          129 EEELEK-----------TLIVDIEPDEHVKRAMNEI  153 (274)
Q Consensus       129 ~~~l~~-----------v~I~~i~~p~~i~~ai~~~  153 (274)
                      ++.+++           |.|++|.||++++++|.++
T Consensus       171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r  206 (207)
T cd03408         171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR  206 (207)
T ss_pred             HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence            999877           8999999999999998753

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]

Probab=99.76  E-value=7.1e-17  Score=134.66  Aligned_cols=179  Identities=14%  Similarity=0.182  Sum_probs=135.8

Q ss_pred             eeEEEecCCceEEEEecCcee-eEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEE-EEccc
Q 023977            5 LGCIQVDQSTVAIKETFGKFD-DVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQY-RALAE   81 (274)
Q Consensus         5 ~~~~~V~~ge~gVv~~fGk~~-~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~y-rI~d~   81 (274)
                      +++..|++||+||.+|-|..- .+.+||+|..+|| +.++. .+.+..|+-++.. .|-|+.|+.+..|-.-.. +..++
T Consensus        21 s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPF-iTt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d   98 (322)
T KOG2962|consen   21 SAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPD   98 (322)
T ss_pred             HHHhhcccCceEEEEecceeeeccCCCCcEEEeee-eecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchh
Confidence            567889999999999999876 5679999999999 88874 5777788887776 899999999988754222 12222


Q ss_pred             hHHHHh--ccccChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHHHHHHHHHHHhh-------------ccccccccchH
Q 023977           82 KASDAF--YKLSNTRSQIQAYVFDVIRASVPKLDLDATFE-QKNDIAKAVEEELEK-------------TLIVDIEPDEH  145 (274)
Q Consensus        82 ~~~~~~--~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~i~~~i~~~l~~-------------v~I~~i~~p~~  145 (274)
                      ..+..+  |+++.....|-+-+...+....+.+|+.+++- --++|..+++..|++             |+++....|+.
T Consensus        99 ~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEa  178 (322)
T KOG2962|consen   99 AVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEA  178 (322)
T ss_pred             HHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHH
Confidence            223322  34444455778888999999999999999998 567888888888887             88899999999


Q ss_pred             HHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcchHHHHH
Q 023977          146 VKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAESKY  186 (274)
Q Consensus       146 i~~ai~~~~~Ae~~~~--------a~~~~Ae~~~~~~i~~A~aeae~~~  186 (274)
                      +...++ .|++|+.+.        -.+.+||.++..++++|+..|+-.+
T Consensus       179 iRrN~E-~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~  226 (322)
T KOG2962|consen  179 IRRNFE-LMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAK  226 (322)
T ss_pred             HHHhHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            999887 477766432        1245688888888888887666443

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.75  E-value=3.1e-16  Score=137.79  Aligned_cols=237  Identities=17%  Similarity=0.121  Sum_probs=164.2

Q ss_pred             EEEecCCceEEEEecCceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHH
Q 023977            7 CIQVDQSTVAIKETFGKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASD   85 (274)
Q Consensus         7 ~~~V~~ge~gVv~~fGk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~   85 (274)
                      |++-.+.+..+++.+|.-...+-+| .|.+||  +++. ++|+...++++.. .+.|+.|+|+.|.+..+.+|..+++..
T Consensus         2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e   77 (428)
T KOG2668|consen    2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE   77 (428)
T ss_pred             CccCCccceEEeecccccCceeccc-ceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence            5677889999999999877666665 456688  6674 7999999999998 699999999999999998885433211


Q ss_pred             -------Hhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccch-
Q 023977           86 -------AFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDE-  144 (274)
Q Consensus        86 -------~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~-  144 (274)
                             .|.+-  .+....+...+.+.+|.++|+||++++|.+|.+|.+.+.+..+.           ..|+|+...+ 
T Consensus        78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g  157 (428)
T KOG2668|consen   78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG  157 (428)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence                   12221  23445667788899999999999999999999999999988765           4556654443 


Q ss_pred             -HHHHHhHHHHHHHHHHHH-------------------------------------------------------------
Q 023977          145 -HVKRAMNEINAAARLRLA-------------------------------------------------------------  162 (274)
Q Consensus       145 -~i~~ai~~~~~Ae~~~~a-------------------------------------------------------------  162 (274)
                       ++..++.+..+|+-.++|                                                             
T Consensus       158 ~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lA  237 (428)
T KOG2668|consen  158 HEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLA  237 (428)
T ss_pred             hHHHHHhhhHHHHHHHhhcccchHHhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHH
Confidence             566655544433332222                                                             


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHHHHhhcchHHHHH
Q 023977          163 --------------------------------------------------------ANEKAEAEKILQIKRAEGEAESKY  186 (274)
Q Consensus       163 --------------------------------------------------------~~~~Ae~~~~~~i~~A~aeae~~~  186 (274)
                                                                              ....||+++...+..|++||+..+
T Consensus       238 yelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~ir  317 (428)
T KOG2668|consen  238 YELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIR  317 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                    011345555566777888888888


Q ss_pred             HhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc------CCCCcEEEecCC
Q 023977          187 LAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA------SSKTNSVFIPHG  252 (274)
Q Consensus       187 ~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~------~~~~~~i~l~~~  252 (274)
                      ...+|+|.+..+.|.++++....-++++..  +.+..   ...--|++|+.++.      ++-++..+++++
T Consensus       318 k~geAEA~~ieA~akaeaeqm~~ka~v~~~--y~~aa---~l~~lLealp~Ia~~ia~plaktnkI~v~s~g  384 (428)
T KOG2668|consen  318 KQGEAEAFAIEADAKAEAEQMAAKAEVYQA--YAQAA---YLRTLLEALPMIAAEIAAPLAKTNKISVWSHG  384 (428)
T ss_pred             HhhhHHHHHHHhhhhhHHHHHHHHHHHHHH--hhhhH---HHHHHHHHHHHHHHHhccchhhcCeEEEEecC
Confidence            888888888888888888777766666532  22221   12336888888763      233466667765

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.66  E-value=3.2e-16  Score=122.80  Aligned_cols=107  Identities=22%  Similarity=0.385  Sum_probs=92.3

Q ss_pred             eceeEEEeecCCCcccCCCceEEEEEEEEEEEccchHHHHhccc--cChHHHHHHHHHHHHHHHcCCCCHHHHhc-CHHH
Q 023977           47 LSLRVQQLDVRCETKTKDNVFVNVVASVQYRALAEKASDAFYKL--SNTRSQIQAYVFDVIRASVPKLDLDATFE-QKND  123 (274)
Q Consensus        47 ~~~r~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~--~~~~~~l~~~~~~~lR~~i~~~t~~el~~-~R~~  123 (274)
                      +++|.++.+.+.+++|+||+++.++++++|||.++.+...+..+  ...+..|.+.+++++|+++|+|+++++++ +|++
T Consensus         3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~   82 (124)
T cd03400           3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE   82 (124)
T ss_pred             ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence            67788888877799999999999999999999876544333232  22445799999999999999999999997 8999


Q ss_pred             HHHHHHHHHhh-----------ccccccccchHHHHHhHHH
Q 023977          124 IAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEI  153 (274)
Q Consensus       124 i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~  153 (274)
                      |.+.+++.+++           |.|+++.||+++.+||+++
T Consensus        83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k  123 (124)
T cd03400          83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence            99999999988           8899999999999999875

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.63  E-value=2.6e-14  Score=134.35  Aligned_cols=181  Identities=20%  Similarity=0.168  Sum_probs=136.3

Q ss_pred             Cce--eEEEecCCceEEEEec---------CceeeEeCCcceeecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEE
Q 023977            3 QAL--GCIQVDQSTVAIKETF---------GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNV   70 (274)
Q Consensus         3 ~~~--~~~~V~~ge~gVv~~f---------Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v   70 (274)
                      ||+  .||++-+...++|..+         |.-.+++-+|+||++|+ ++.. .++++++..+++.. .++|+||.++.+
T Consensus        28 if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi-~q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v  105 (548)
T COG2268          28 IFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPI-FQTI-ERMSLTTIKLEVEIDNVYTKDGMPLNV  105 (548)
T ss_pred             HHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecc-eeee-EEeeeeeeeeeeeeeeeEecCCCccce
Confidence            455  5676444444444444         44558899999999999 7877 47999999999885 899999999999


Q ss_pred             EEEEEEEEccch--HHHHh--cccc----ChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHHHHHHHhh--------
Q 023977           71 VASVQYRALAEK--ASDAF--YKLS----NTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKAVEEELEK--------  134 (274)
Q Consensus        71 ~~~v~yrI~d~~--~~~~~--~~~~----~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~i~~~l~~--------  134 (274)
                      +++...+|.|..  ...+.  |...    +....+...+.+.||.+++++|+.+++++|..|.+.|.+.+..        
T Consensus       106 ~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~  185 (548)
T COG2268         106 EAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLV  185 (548)
T ss_pred             eEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCee
Confidence            999999998742  11222  2222    3455678889999999999999999999999999888877665        


Q ss_pred             ---ccccccccc-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Q 023977          135 ---TLIVDIEPD-------EHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESK  185 (274)
Q Consensus       135 ---v~I~~i~~p-------~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~  185 (274)
                         +.|.++..+       ..+.++...+..++-.+.+.+.++|.+++..+..++++.++.
T Consensus       186 l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~  246 (548)
T COG2268         186 LDSLAINDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAK  246 (548)
T ss_pred             eeeeeecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHH
Confidence               778888877       899999988877777777777666666666665555544433

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.57  E-value=9.7e-15  Score=115.06  Aligned_cols=106  Identities=22%  Similarity=0.261  Sum_probs=90.0

Q ss_pred             eceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchH--HHHhc---c--ccChHHHHHHHHHHHHHHHcCCCCHHHHh
Q 023977           47 LSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKA--SDAFY---K--LSNTRSQIQAYVFDVIRASVPKLDLDATF  118 (274)
Q Consensus        47 ~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~--~~~~~---~--~~~~~~~l~~~~~~~lR~~i~~~t~~el~  118 (274)
                      +++|.+.++++. +++|+|++++.++++++|||.|+..  .....   +  ..+....+.+.+++++|+++|+|++++++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~   81 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY   81 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            578999999987 8999999999999999999998652  11111   1  13457788999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHH
Q 023977          119 EQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNE  152 (274)
Q Consensus       119 ~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~  152 (274)
                      ++|++|.+.|.+.+++           |.|++|.+|+.+.+++.+
T Consensus        82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~  126 (128)
T cd03399          82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD  126 (128)
T ss_pred             HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence            9999999999999887           899999999998877653

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.36  E-value=8.7e-12  Score=95.90  Aligned_cols=102  Identities=37%  Similarity=0.540  Sum_probs=86.6

Q ss_pred             eEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccCh--HHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHH
Q 023977           50 RVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNT--RSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK  126 (274)
Q Consensus        50 r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~--~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~  126 (274)
                      +..+.+.+. .++|+||+++.+++++.|+|.|+.  .+++.....  ...+.+.+.+++|++++.++++++.++|++|.+
T Consensus         5 ~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~   82 (121)
T cd02106           5 RRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAA   82 (121)
T ss_pred             eeEEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHH
Confidence            334444444 899999999999999999999865  345554433  478999999999999999999999999999999


Q ss_pred             HHHHHHhh-----------ccccccccchHHHHHhHHH
Q 023977          127 AVEEELEK-----------TLIVDIEPDEHVKRAMNEI  153 (274)
Q Consensus       127 ~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~  153 (274)
                      .+++.+..           |.|+++.+|+++.++++++
T Consensus        83 ~v~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~  120 (121)
T cd02106          83 EVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR  120 (121)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence            99999876           8899999999999999875

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PTZ00491 major vault protein; Provisional

Probab=98.64  E-value=3.3e-06  Score=83.47  Aligned_cols=121  Identities=16%  Similarity=0.106  Sum_probs=85.0

Q ss_pred             EEEecCCceEEEEec--CceeeEeCCcceeecCCCcceeeEeeceeEE---------E--eecC------C-CcccCCCc
Q 023977            7 CIQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRVQ---------Q--LDVR------C-ETKTKDNV   66 (274)
Q Consensus         7 ~~~V~~ge~gVv~~f--Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~~---------~--~~~~------~-~v~T~D~~   66 (274)
                      .|.||.+.+.-|+-+  ++-.-+.||-+.+.-|=  +.+. .+++..-         .  +...      . .+-|+|.-
T Consensus       464 ~~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhA  540 (850)
T PTZ00491        464 TYKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHA  540 (850)
T ss_pred             EEEcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccc
Confidence            356777776666554  44445579988888776  4442 3443321         1  1111      1 47899999


Q ss_pred             eEEEEEEEEEEEc----cchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHH-HHHHHHHH
Q 023977           67 FVNVVASVQYRAL----AEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKN-DIAKAVEE  130 (274)
Q Consensus        67 ~v~v~~~v~yrI~----d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~-~i~~~i~~  130 (274)
                      .+.+..+.+|+.+    |+.....+|++.|+-.-+...+.+.+|..+++.+++++..+-. -|.+.|..
T Consensus       541 rL~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg  609 (850)
T PTZ00491        541 RLALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFG  609 (850)
T ss_pred             eEEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhcc
Confidence            9999999999986    3332356899999999999999999999999999999998443 34555554

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=98.56  E-value=4.4e-06  Score=71.32  Aligned_cols=145  Identities=18%  Similarity=0.214  Sum_probs=102.2

Q ss_pred             eEEEecCCceEEEEecCceeeEeCCcceee----cCCC--------------cceeeEeeceeEEE-eec--CCC--ccc
Q 023977            6 GCIQVDQSTVAIKETFGKFDDVLEPGCHCL----PWCL--------------GSQVAGQLSLRVQQ-LDV--RCE--TKT   62 (274)
Q Consensus         6 ~~~~V~~ge~gVv~~fGk~~~~l~pGl~~~----~P~~--------------i~~v~~~~~~r~~~-~~~--~~~--v~T   62 (274)
                      |--+|++||.+|..+=|++..+.+||.|-.    +|++              ...| |-++++... ...  +..  ...
T Consensus        15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eV-yFvn~~~~~~~kwGT~~pi~~~D   93 (211)
T PF13421_consen   15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEV-YFVNTKEITNIKWGTPNPIPYRD   93 (211)
T ss_pred             CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEE-EEEECeEecCCccCCCCCeeecC
Confidence            567899999999999999988999999875    3330              2233 346655532 122  111  222


Q ss_pred             CC--CceEEEEEEEEEEEccchHHHHhccc---------cChHHHHHHHHHHHHHHHcC--CCCHHHHhcCHHHHHHHHH
Q 023977           63 KD--NVFVNVVASVQYRALAEKASDAFYKL---------SNTRSQIQAYVFDVIRASVP--KLDLDATFEQKNDIAKAVE  129 (274)
Q Consensus        63 ~D--~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lR~~i~--~~t~~el~~~R~~i~~~i~  129 (274)
                      .+  .++|..-.+..|||.||.  .++.++         ++..+.+++.+.+.+-+.++  ++++.+|-..-.+|++.++
T Consensus        94 ~~~~~v~lra~G~ys~rI~Dp~--~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~  171 (211)
T PF13421_consen   94 PEYGPVRLRAFGTYSFRIVDPV--LFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK  171 (211)
T ss_pred             CCCCcEEEEEEEEEEEEEeCHH--HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            22  457788888899999964  333221         23345666666666766665  5789999999999999999


Q ss_pred             HHHhh-----------ccccccccchHHHHHhHHH
Q 023977          130 EELEK-----------TLIVDIEPDEHVKRAMNEI  153 (274)
Q Consensus       130 ~~l~~-----------v~I~~i~~p~~i~~ai~~~  153 (274)
                      +.|+.           +.|.+|.+|++.+++|+++
T Consensus       172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~  206 (211)
T PF13421_consen  172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR  206 (211)
T ss_pred             HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence            99887           8899999999999988864

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=97.66  E-value=0.0011  Score=58.05  Aligned_cols=147  Identities=12%  Similarity=0.139  Sum_probs=101.3

Q ss_pred             eEEEecCCceEEEEecCceeeEe-CCcceee----cCCC--------------cceeeEeeceeEEE-eecC--C--Ccc
Q 023977            6 GCIQVDQSTVAIKETFGKFDDVL-EPGCHCL----PWCL--------------GSQVAGQLSLRVQQ-LDVR--C--ETK   61 (274)
Q Consensus         6 ~~~~V~~ge~gVv~~fGk~~~~l-~pGl~~~----~P~~--------------i~~v~~~~~~r~~~-~~~~--~--~v~   61 (274)
                      |+.+|.|++-++...-|++..+. ++|.+=+    +|++              -+.| |-+++++.. +...  .  .+.
T Consensus        40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eV-yfvntqe~~girwGT~qpin~~  118 (345)
T COG4260          40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEV-YFVNTQEIKGIRWGTPQPINYF  118 (345)
T ss_pred             cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceE-EEEecceecceecCCCCCeecc
Confidence            57789999999988889988665 4775422    3321              3334 457777765 3332  2  222


Q ss_pred             c---CCCceEEEEEEEEEEEccchHH-H------HhccccChHHHHHHHHHHHHHHHcCCCCHH--HHhcCHHHHHHHHH
Q 023977           62 T---KDNVFVNVVASVQYRALAEKAS-D------AFYKLSNTRSQIQAYVFDVIRASVPKLDLD--ATFEQKNDIAKAVE  129 (274)
Q Consensus        62 T---~D~~~v~v~~~v~yrI~d~~~~-~------~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~--el~~~R~~i~~~i~  129 (274)
                      .   .-++++....+..|+|+||..+ .      -.|.+++.++.+-+.+..+|-..|+++-.+  .+-.+--+|++.+.
T Consensus       119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~  198 (345)
T COG4260         119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMA  198 (345)
T ss_pred             cccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHH
Confidence            2   2357889999999999996421 0      112234456667777788888888776433  44457788999999


Q ss_pred             HHHhh-----------ccccccccchHHHHHhHHH
Q 023977          130 EELEK-----------TLIVDIEPDEHVKRAMNEI  153 (274)
Q Consensus       130 ~~l~~-----------v~I~~i~~p~~i~~ai~~~  153 (274)
                      +.|.+           |.|-+|++|++.+..|+.+
T Consensus       199 e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r  233 (345)
T COG4260         199 EVLDEQWTQYGMAVDSFQVASISYPDESQALINMR  233 (345)
T ss_pred             HHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence            99987           8999999999999999864

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=97.35  E-value=0.0011  Score=57.54  Aligned_cols=57  Identities=18%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHH
Q 023977          150 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS  206 (274)
Q Consensus       150 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a  206 (274)
                      ...+..|+.++++.+.+||+++++.++.|+|++++.+++|+|+|++..+.+++..+.
T Consensus       169 ~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~  225 (242)
T cd03405         169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKD  225 (242)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            344566777777888888888888899999999999999999999988888766543

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01932 hflC HflC protein

Probab=96.79  E-value=0.0093  Score=54.13  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977          156 AARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR  204 (274)
Q Consensus       156 Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a  204 (274)
                      ++-++.++...+++++++..+.|+|++++.+++|+|+|++..+.+++..
T Consensus       230 ~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~  278 (317)
T TIGR01932       230 SQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYG  278 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3444444455555555555555666666666666666666555555543

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=96.72  E-value=0.013  Score=53.59  Aligned_cols=54  Identities=19%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHH
Q 023977          152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRD  205 (274)
Q Consensus       152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~  205 (274)
                      ....|+-++++...+++++++...+.|+|++++.+++|+|+|++..+.+++...
T Consensus       236 ~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~  289 (334)
T PRK11029        236 RRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQ  289 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            344566666777777778777778888888888888888888888777776653

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=96.63  E-value=0.0062  Score=53.71  Aligned_cols=48  Identities=17%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977          166 KAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN  213 (274)
Q Consensus       166 ~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a  213 (274)
                      .|+.++++.+.+|++++.+.+..|+|++++.+++|+|.+++...++++
T Consensus       154 ~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g  201 (262)
T cd03407         154 AAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADG  201 (262)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            455555555555555555555566666666666666655555555544

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=96.56  E-value=0.017  Score=50.91  Aligned_cols=50  Identities=20%  Similarity=0.172  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977          164 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN  213 (274)
Q Consensus       164 ~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a  213 (274)
                      ...|+.++++.+.+|++++++.+..|+|+|++..+.|+|++++....+++
T Consensus       185 ~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~  234 (266)
T cd03404         185 VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQG  234 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHH
Confidence            34677777888888899999999999999999999999999887777664

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>TIGR01933 hflK HflK protein

Probab=96.39  E-value=0.034  Score=48.86  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHH
Q 023977          153 INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS  206 (274)
Q Consensus       153 ~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a  206 (274)
                      +.+|+.++...+.+|++++++.+..|+|++++.+++|+|+|++..+.+++-..+
T Consensus       169 ~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~  222 (261)
T TIGR01933       169 INEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKA  222 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC
Confidence            445666666677789999999999999999999999999999988777765443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=96.30  E-value=0.029  Score=49.04  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             eeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHHH
Q 023977           49 LRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAKA  127 (274)
Q Consensus        49 ~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~~  127 (274)
                      .....++.|. ....+||..+.+.+.|..|-+   ..+ +-+-...+..+-..-++.+..+=+.-+..+++++-+.|++.
T Consensus       122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~  197 (316)
T PF12127_consen  122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKT  197 (316)
T ss_pred             cCCeeecCcchhhhhcCCeEEEEEEEEEEEec---HHH-hccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHH
Confidence            3344566666 678899999999888888875   223 33444555666666666666666667888999999999988


Q ss_pred             HHHH-Hhh---ccccccccch-HHHHHhHHHHHHHH
Q 023977          128 VEEE-LEK---TLIVDIEPDE-HVKRAMNEINAAAR  158 (274)
Q Consensus       128 i~~~-l~~---v~I~~i~~p~-~i~~ai~~~~~Ae~  158 (274)
                      +.+. |+.   ++|.+|+.-+ ++-+.|..++++.|
T Consensus       198 VL~kgLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQ  233 (316)
T PF12127_consen  198 VLEKGLDAGTAFEILSIDIADIDVGENIGAKLQTDQ  233 (316)
T ss_pred             HHhhCCCcCceeEEEEeeeeccccchhhchhhhHHH
Confidence            7654 444   6666665544 45555666655543

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.08  E-value=0.25  Score=47.70  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=48.4

Q ss_pred             hcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcC--------CCCcEEEe
Q 023977          178 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGAS--------SKTNSVFI  249 (274)
Q Consensus       178 A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~--------~~~~~i~l  249 (274)
                      +++++++.+..+.++|++.+.+|+|++++.+.+++++...+....  ..++..-+++|+.++.+        +..+++.+
T Consensus       411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i  488 (548)
T COG2268         411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVI  488 (548)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEec
Confidence            445777777777788888888888888888888888754333312  12223456677666531        45567777


Q ss_pred             cCCCC
Q 023977          250 PHGPG  254 (274)
Q Consensus       250 ~~~~~  254 (274)
                      |...+
T Consensus       489 ~~~~~  493 (548)
T COG2268         489 GGANG  493 (548)
T ss_pred             CCccc
Confidence            76554

>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]

Probab=95.97  E-value=0.013  Score=50.89  Aligned_cols=53  Identities=28%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977          152 EINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR  204 (274)
Q Consensus       152 ~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a  204 (274)
                      ...++|-+|+++|++|||+++..+...+|.+...+..|.|+|++..+.|++-+
T Consensus       176 ailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a  228 (301)
T KOG2620|consen  176 AILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVA  228 (301)
T ss_pred             HHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhccc
Confidence            34567778888999999999888888888888888888888888877766544

>PRK13665 hypothetical protein; Provisional

Probab=95.50  E-value=0.039  Score=48.03  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             ceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHHHH
Q 023977           48 SLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDIAK  126 (274)
Q Consensus        48 ~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i~~  126 (274)
                      |.....++.|. ....+||..+.+.+.+..|-+   ..+ +-+-..-+..+-..-++.+..+=+.-+..+++++-+.|++
T Consensus       126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i~r-LVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk  201 (316)
T PRK13665        126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---IDR-LVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK  201 (316)
T ss_pred             ccCCeeecCCcchhhcccCeEEEEEEEEEeehh---HHH-HhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence            33445566666 678899999988888877754   222 2232233333444444444445556788899999999997


Q ss_pred             HHHH-HHhh---ccccccccch-HHHHHhHHHHHHH
Q 023977          127 AVEE-ELEK---TLIVDIEPDE-HVKRAMNEINAAA  157 (274)
Q Consensus       127 ~i~~-~l~~---v~I~~i~~p~-~i~~ai~~~~~Ae  157 (274)
                      .+.+ .|+.   ++|.+|+.-+ ++-+.|..++++.
T Consensus       202 ~VL~kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~d  237 (316)
T PRK13665        202 TVLSKGLDAGTAFEILSIDIADVDVGKNIGAKLQTD  237 (316)
T ss_pred             HHHhccCCcCceeEEEEEeeeccccchhhchhhhHH
Confidence            7654 3554   6665555443 4445556555554

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=93.29  E-value=0.26  Score=43.88  Aligned_cols=50  Identities=24%  Similarity=0.270  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc
Q 023977          163 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN  213 (274)
Q Consensus       163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a~a~~~~~~a  213 (274)
                      ....||.++++.+.+|++++++.++.|+|++++..+.++|.+++ +.++++
T Consensus       181 ~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a  230 (291)
T COG0330         181 KQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA  230 (291)
T ss_pred             HHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence            44567888888999999999999999999999999999998887 545544

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=92.17  E-value=1.1  Score=42.36  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977          154 NAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ  195 (274)
Q Consensus       154 ~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a  195 (274)
                      .+|+..+...+.+|++++++.+..|+|.+++.+++|+|+|++
T Consensus       266 ~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~r  307 (419)
T PRK10930        266 REAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVAR  307 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            355555555666788888888888888888888888888755

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=90.31  E-value=1.8  Score=33.11  Aligned_cols=63  Identities=11%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             CcccCCCceEEEEEEEEEEEcc----chHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCH
Q 023977           59 ETKTKDNVFVNVVASVQYRALA----EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQK  121 (274)
Q Consensus        59 ~v~T~D~~~v~v~~~v~yrI~d----~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R  121 (274)
                      .+-|+|.-.+.+..+..|...-    +.....+|++.|+-.-+...+.+.+|..+++.+.++...+-
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknS   76 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNS   76 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccH
Confidence            4679999999999999998853    12235689999999999999999999999999999998743

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=90.25  E-value=1.3  Score=37.35  Aligned_cols=47  Identities=23%  Similarity=0.097  Sum_probs=20.2

Q ss_pred             HHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcchHHHHHHhchhhH
Q 023977          147 KRAMNEINAAARLRLAANE--KAEAEKILQIKRAEGEAESKYLAGLGIA  193 (274)
Q Consensus       147 ~~ai~~~~~Ae~~~~a~~~--~Ae~~~~~~i~~A~aeae~~~~~Aea~a  193 (274)
                      .+.|..+...+-+.++...  +|+.+++..+..|+.+|+.....|+.++
T Consensus         9 ~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea   57 (198)
T PRK01558          9 INKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEA   57 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433  3444444444444444444444444333

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=89.90  E-value=2.9  Score=35.24  Aligned_cols=25  Identities=24%  Similarity=0.084  Sum_probs=9.6

Q ss_pred             HHHHhhcchHHHHHHhchhhHHHHH
Q 023977          173 LQIKRAEGEAESKYLAGLGIARQRQ  197 (274)
Q Consensus       173 ~~i~~A~aeae~~~~~Aea~a~a~~  197 (274)
                      ..+..|+.+|+..+..|+.+|+...
T Consensus        26 ~Ii~eA~~eAe~Ii~eA~~eAe~i~   50 (198)
T PRK01558         26 EIILEAKEEAEEIIAKAEEEAKELK   50 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=88.80  E-value=3.3  Score=31.70  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHh
Q 023977          149 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA  188 (274)
Q Consensus       149 ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~  188 (274)
                      -|..-+.||+++..-+..|+..+...+.+|+.+|+..+..
T Consensus         7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~   46 (113)
T TIGR01147         7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK   46 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666778888888888889988888899998888887755

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=87.84  E-value=3.1  Score=33.84  Aligned_cols=72  Identities=8%  Similarity=0.062  Sum_probs=54.2

Q ss_pred             CceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh----c-cc
Q 023977           65 NVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK----T-LI  137 (274)
Q Consensus        65 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~----v-~I  137 (274)
                      +....|.+.+.|++.|.....   .+..    =.+.+++.+...+++.|.+++-+  +++++.+++++.|+.    . .|
T Consensus        76 ~~~~~v~i~i~l~~~n~~~~~---el~~----~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~~V  148 (159)
T COG1580          76 PKDRYVKIAITLEVANKALLE---ELEE----KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQVV  148 (159)
T ss_pred             CCcEEEEEEEEEeeCCHHHHH---HHHH----hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCCee
Confidence            677888999999998843211   1111    13568899999999999999998  899999999999988    3 56


Q ss_pred             cccccc
Q 023977          138 VDIEPD  143 (274)
Q Consensus       138 ~~i~~p  143 (274)
                      .||-|-
T Consensus       149 ~dV~fT  154 (159)
T COG1580         149 KDVLFT  154 (159)
T ss_pred             EEEeee
Confidence            665543

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=83.72  E-value=9.3  Score=31.67  Aligned_cols=42  Identities=21%  Similarity=0.064  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhchh
Q 023977          150 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLG  191 (274)
Q Consensus       150 i~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea  191 (274)
                      |-.++.++-++++....+++++++..+.+++++++..+..++
T Consensus         6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~   47 (188)
T PRK02292          6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDR   47 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555555444443

>PLN03086 PRLI-interacting factor K; Provisional

Probab=83.43  E-value=1.2  Score=43.34  Aligned_cols=19  Identities=11%  Similarity=0.326  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEecC
Q 023977          230 QYFDTMKEIGASSKTNSVFIPH  251 (274)
Q Consensus       230 ~~le~l~~~~~~~~~~~i~l~~  251 (274)
                      +.|+++...   +++..|+||.
T Consensus        80 ~~~~~~~~~---~~GdKI~LPp   98 (567)
T PLN03086         80 RIFEAVSFQ---GNGDKIKLPP   98 (567)
T ss_pred             EEeeccccC---CCCCeEEcCH
Confidence            344544443   5778899995

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=83.20  E-value=2.1  Score=36.18  Aligned_cols=25  Identities=20%  Similarity=0.264  Sum_probs=10.9

Q ss_pred             hcchHHHHHHhchhhHHHHHHHHHH
Q 023977          178 AEGEAESKYLAGLGIARQRQAIVDG  202 (274)
Q Consensus       178 A~aeae~~~~~Aea~a~a~~~~a~a  202 (274)
                      |+.++++.+.+|+|++++.+++++|
T Consensus       156 A~~~~~a~i~~A~ge~~a~~~~aea  180 (215)
T cd03403         156 AEREKRAKIIEAEGERQAAILLAEA  180 (215)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3444444444444444444444333

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=82.99  E-value=2.5  Score=35.16  Aligned_cols=25  Identities=8%  Similarity=-0.074  Sum_probs=19.6

Q ss_pred             HHHHHHhchhhHHHHHHHHHHHHHH
Q 023977          182 AESKYLAGLGIARQRQAIVDGLRDS  206 (274)
Q Consensus       182 ae~~~~~Aea~a~a~~~~a~a~a~a  206 (274)
                      ++..+.+|+++|++.+++|+|++++
T Consensus       171 a~~~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         171 AKFVVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3345677888999999999998875

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=82.27  E-value=30  Score=29.41  Aligned_cols=34  Identities=26%  Similarity=0.134  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHH
Q 023977          162 AANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ  195 (274)
Q Consensus       162 a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a  195 (274)
                      ..+..|+.+++..+..|+.+++..+..|+.+++.
T Consensus        31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~   64 (207)
T PRK01005         31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQ   64 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555555444444443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=81.87  E-value=11  Score=31.34  Aligned_cols=13  Identities=38%  Similarity=0.061  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHH
Q 023977          161 LAANEKAEAEKIL  173 (274)
Q Consensus       161 ~a~~~~Ae~~~~~  173 (274)
                      ++....+++++++
T Consensus        28 ~~~~i~~ea~~~a   40 (188)
T PRK02292         28 EAEEIIAEAEADA   40 (188)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333443333

>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=81.42  E-value=5.2  Score=36.50  Aligned_cols=44  Identities=25%  Similarity=0.215  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHhchhhHHHHHHHHHHHH
Q 023977          159 LRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLR  204 (274)
Q Consensus       159 ~~~a~~~~Ae~~~~~~i~~A~aeae~~~~~Aea~a~a~~~~a~a~a  204 (274)
                      +++.-+..|++++  ..++-+++||+..+.|.|.+++.+-.++|++
T Consensus       301 nk~~~~~qaqAEA--~~irk~geAEA~~ieA~akaeaeqm~~ka~v  344 (428)
T KOG2668|consen  301 NKELYNKQAQAEA--ELIRKQGEAEAFAIEADAKAEAEQMAAKAEV  344 (428)
T ss_pred             HHHHHHHHHHHHH--HHHHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3333344444443  4455556666666666555555544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	2e-08
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	1e-07
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	8e-05
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-04

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 40  GSQVAGQLSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAFYK---LSNTRS 95
                 ++SL +  L  RCE  +T + V + V    Q + + EK   A      L     
Sbjct: 3   SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQ 62

Query: 96  QIQAYVFDVI----RASVPKLDLDATFEQKNDIAKAVEEELEKTL-----------IVDI 140
            I+  V   +    R+ +  L ++  ++ ++  AK V E     +           I D+
Sbjct: 63  DIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122

Query: 141 EPDEHVKRAMNEINAAAR 158
                   ++ +   +  
Sbjct: 123 YDKVDYLSSLGKTQTSGP 140

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 48  SLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIR 106
            LR Q LDV   ET TKDNV V V A V +R +      A  ++ N            +R
Sbjct: 10  DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQVKNYIMATSQISQTTLR 67

Query: 107 ASVPKLDLDATFEQKNDIAKAVEEEL-EKTL----------IVDIEPDEHVKRAMNEINA 155
           + + +  LD    +++ +   ++  + E T           I D+E    +++AM     
Sbjct: 68  SVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAE 127

Query: 156 AARLRLAANEKAEAEKILQIKRAEG 180
           A R R A    AEAE+    K  E 
Sbjct: 128 AERERRARITLAEAERQAAEKLREA 152

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 48  SLRVQQLDV-RCETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIR 106
            +R    D+   E  TKD+V ++V   V YR     A+ A   ++N  S  +      +R
Sbjct: 15  DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVANITNADSATRLLAQTTLR 72

Query: 107 ASVPKLDLDATFEQKNDIAKAVEEEL-EKTL----------IVDIEPDEHVKRAMN 151
            ++   +L      + +IA  ++  L + T           I D++    ++RAM 
Sbjct: 73  NALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMA 128

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 44  AGQLSLRVQQLDV-RCETKTKDNVFVNVVASVQYRAL-AEKASDAFYKLSNTRSQIQAYV 101
           +  + LR   +DV   E   KDNV V V A V Y+ +   KA    Y +S+    I    
Sbjct: 2   SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAV---YNVSDFLMAIVKLA 58

Query: 102 FDVIRASVPKLDLDATFEQKNDIAKAVEEEL 132
              +RA + +++LD T   ++ I   + EEL
Sbjct: 59  QTNLRAIIGEMELDETLSGRDIINARLREEL 89

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 9/39 (23%)

Query: 81  EKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE 119
           EK +    KL    + ++ Y  D    S P L + AT E
Sbjct: 18  EKQA--LKKLQ---ASLKLYADD----SAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.95
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.9
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.75
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.73
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.44
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	83.52
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	82.92
3u5c_B	255	RP10A, 40S ribosomal protein S1-A; translation, ri	81.43

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.95  E-value=2e-27  Score=198.47  Aligned_cols=167  Identities=24%  Similarity=0.239  Sum_probs=130.1

Q ss_pred             cceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHh
Q 023977           40 GSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATF  118 (274)
Q Consensus        40 i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~  118 (274)
                      ++++ .++|+|.++++++. .++|+||++|.|+++++|||.||  .++++.+.|+...+.+++++.+|+++|++++++++
T Consensus         3 i~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp--~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell   79 (188)
T 3bk6_A            3 FEKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDP--VKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL   79 (188)
T ss_dssp             EEEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCH--HHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             eEEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCH--HHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence            7888 57999999999987 89999999999999999999984  46788999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q 023977          119 EQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL  187 (274)
Q Consensus       119 ~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~i~~A~aeae~~~~  187 (274)
                      ++|++|+..|++.|++           |.|++|.||+++.++|++++.|++++++.+.+|||++++           .++
T Consensus        80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~~~  148 (188)
T 3bk6_A           80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------AEK  148 (188)
T ss_dssp             HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHH
Confidence            9999999999999988           899999999999999999999888877766666665543           322


Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcCCCCc
Q 023977          188 AGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTN  245 (274)
Q Consensus       188 ~Aea~a~a~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~~~~~~le~l~~~~~~~~~~  245 (274)
                      .|+|               .+.++.      +|.    ++.+||||++.+++.+++++
T Consensus       149 ~a~a---------------~~~~~~------~~~----~l~lr~le~~~~ia~~~~~~  181 (188)
T 3bk6_A          149 LREA---------------AEIISE------HPM----ALQLRTLQTISDVAGDKSNL  181 (188)
T ss_dssp             HHHH---------------HHHHHH------CTT----HHHHHHTTC-----------
T ss_pred             HHHH---------------HHHHHh------CHH----HHHHHHHHHHHHHhcCCCCc
Confidence            2221               122322      233    35578999999998755443

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.90  E-value=3.1e-24  Score=169.29  Aligned_cols=119  Identities=23%  Similarity=0.291  Sum_probs=93.7

Q ss_pred             eecCCCcceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCC
Q 023977           34 CLPWCLGSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKL  112 (274)
Q Consensus        34 ~~~P~~i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~  112 (274)
                      ++.|| ++++. ++|+|.++++++. +++|+|+++|.||++++|||.|  +.+++|++.|++..+.++++++||+++|++
T Consensus         3 l~~P~-id~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~   78 (133)
T 4fvg_A            3 LGSPS-TDSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK   78 (133)
T ss_dssp             -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCc-eeEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            67899 99995 7999999999987 8999999999999999999999  568899999999999999999999999999


Q ss_pred             CHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHH
Q 023977          113 DLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAA  156 (274)
Q Consensus       113 t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~A  156 (274)
                      ++++++++|++|+..+++.+++           |+|++++||+++.+||+++++|
T Consensus        79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A  133 (133)
T 4fvg_A           79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA  133 (133)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence            9999999999999999999987           9999999999999999887765

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.75  E-value=1.2e-19  Score=144.78  Aligned_cols=117  Identities=17%  Similarity=0.300  Sum_probs=99.7

Q ss_pred             cceeeEeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEc-cchH-HHHhccc-----cChHHHHHHHHHHHHHHHcCC
Q 023977           40 GSQVAGQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRAL-AEKA-SDAFYKL-----SNTRSQIQAYVFDVIRASVPK  111 (274)
Q Consensus        40 i~~v~~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~-d~~~-~~~~~~~-----~~~~~~l~~~~~~~lR~~i~~  111 (274)
                      ++++. ++|+|++++++++ +++|+||++|.||++++|||. ||.. ..++.++     ...+..+.++++++||+++|+
T Consensus         4 i~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            4 GSSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            68885 7999999999998 899999999999999999998 4432 1122221     224566888999999999999


Q ss_pred             CCHHHHhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHHH
Q 023977          112 LDLDATFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAAA  157 (274)
Q Consensus       112 ~t~~el~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~Ae  157 (274)
                      +++++++++|++|+..|.+.+++           |+|+||+||+++.+||++++.||
T Consensus        83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae  139 (143)
T 1win_A           83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence            99999999999999999999988           99999999999999999876665

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.73  E-value=6.5e-18  Score=129.12  Aligned_cols=98  Identities=32%  Similarity=0.432  Sum_probs=91.7

Q ss_pred             eeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHH
Q 023977           46 QLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI  124 (274)
Q Consensus        46 ~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i  124 (274)
                      ++|+|.++++++. +++|+|+++|.++++++|||.||  .++++++.+++..|.+++++++|+++|++++++++++|++|
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp--~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i   81 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDP--VKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII   81 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCT--TTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence            5899999999998 99999999999999999999985  47888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-----------ccccccccchH
Q 023977          125 AKAVEEELEK-----------TLIVDIEPDEH  145 (274)
Q Consensus       125 ~~~i~~~l~~-----------v~I~~i~~p~~  145 (274)
                      +..+++.|++           |.|+++.||++
T Consensus        82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           82 NARLREELDKITDRWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence            9999999987           89999999963

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.44  E-value=1.1e-05  Score=78.53  Aligned_cols=114  Identities=13%  Similarity=0.152  Sum_probs=81.7

Q ss_pred             EEecCCceEEEEec--CceeeEeCCcceeecCCCcceeeEeeceeE---------EE--eecC-------CCcccCCCce
Q 023977            8 IQVDQSTVAIKETF--GKFDDVLEPGCHCLPWCLGSQVAGQLSLRV---------QQ--LDVR-------CETKTKDNVF   67 (274)
Q Consensus         8 ~~V~~ge~gVv~~f--Gk~~~~l~pGl~~~~P~~i~~v~~~~~~r~---------~~--~~~~-------~~v~T~D~~~   67 (274)
                      |.||.+.+.-++-+  |+..-+.||-+.+.-|-  +.+. .+++..         ..  +...       ..+-|+|...
T Consensus       460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~ft-vlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhAr  536 (861)
T 2zuo_A          460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQFT-VLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHAR  536 (861)
T ss_dssp             EECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEEC-CEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCE
T ss_pred             EEcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccEE-EEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceE
Confidence            56888888888876  44445578888666554  3331 232221         11  1121       1578999999


Q ss_pred             EEEEEEEEEEEc--cc---hHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhcCHHHH
Q 023977           68 VNVVASVQYRAL--AE---KASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFEQKNDI  124 (274)
Q Consensus        68 v~v~~~v~yrI~--d~---~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~~R~~i  124 (274)
                      +.+..+.+|+..  |+   .....+|.+.|+-.-+...+.+.+|..+++.+++++..+-..|
T Consensus       537 L~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~i  598 (861)
T 2zuo_A          537 LQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARI  598 (861)
T ss_dssp             EEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHH
Confidence            999999999985  32   2235689999999999999999999999999999998754444

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=83.52  E-value=10  Score=27.20  Aligned_cols=29  Identities=31%  Similarity=0.244  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHhchh
Q 023977          163 ANEKAEAEKILQIKRAEGEAESKYLAGLG  191 (274)
Q Consensus       163 ~~~~Ae~~~~~~i~~A~aeae~~~~~Aea  191 (274)
                      .+..|..++...+..|++++.+....|+.
T Consensus        21 ~lE~Ar~eA~~~v~~AEAeA~ril~eAe~   49 (105)
T 3v6i_B           21 RLEAAKKEAEERVKRAEAEAKALLEEAEA   49 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555555554444444443

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=82.92  E-value=6.5  Score=38.76  Aligned_cols=16  Identities=38%  Similarity=0.491  Sum_probs=7.1

Q ss_pred             hhcchHHHHHHhchhh
Q 023977          177 RAEGEAESKYLAGLGI  192 (274)
Q Consensus       177 ~A~aeae~~~~~Aea~  192 (274)
                      .|++.||+.+++++|.
T Consensus       725 eA~a~aea~~Ie~ea~  740 (861)
T 2zuo_A          725 EAESRAEAARIEGEGS  740 (861)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHH
Confidence            3444444444444443

>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B

Probab=81.43  E-value=1.4  Score=37.38  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             CcccCCCceEEEEEEEEEEEccchHHHHhccccChHHHHHHHHHHHHHHHcCCCCHHHHhc--CHHHHHHHHHHHHhh--
Q 023977           59 ETKTKDNVFVNVVASVQYRALAEKASDAFYKLSNTRSQIQAYVFDVIRASVPKLDLDATFE--QKNDIAKAVEEELEK--  134 (274)
Q Consensus        59 ~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lR~~i~~~t~~el~~--~R~~i~~~i~~~l~~--  134 (274)
                      ++.|.||..+.|-...+-+-.+.+..+..|.-......|+......+...++..++++++.  --+.|..+|...++.  
T Consensus       126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~Iy  205 (255)
T 3u5c_B          126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIF  205 (255)
T ss_dssp             EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTC
T ss_pred             EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhcccc
Confidence            7899999999887776543322222233444445567899999999999999999999998  357899999999988  


Q ss_pred             ----ccccccc
Q 023977          135 ----TLIVDIE  141 (274)
Q Consensus       135 ----v~I~~i~  141 (274)
                          |.|+.+.
T Consensus       206 PL~~V~IrKvK  216 (255)
T 3u5c_B          206 PLQNIHVRKVK  216 (255)
T ss_dssp             CCEEEECCCEE
T ss_pred             ccceEEEEEEE
Confidence                7777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1wina_	143	d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T	3e-14

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (161), Expect = 3e-14
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 19/131 (14%)

Query: 47  LSLRVQQLDVRCET-KTKDNVFVNVVASVQYRALAEKASDAF-------YKLSNTRSQIQ 98
           +SL +  L  RCE  +T + V + V    Q + + EK   A          + + ++ + 
Sbjct: 10  ISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVL 69

Query: 99  AYVFDVIRASVPKLDLDATFEQKNDIAKAVEE-----------ELEKTLIVDIEPDEHVK 147
             +   +R+ +  L ++  ++ ++  AK V E           E+    I D+       
Sbjct: 70  QTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYL 129

Query: 148 RAMNEINAAAR 158
            ++ +   +  
Sbjct: 130 SSLGKTQTSGP 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.69

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.6e-18  Score=135.03  Aligned_cols=112  Identities=18%  Similarity=0.300  Sum_probs=98.1

Q ss_pred             EeeceeEEEeecCC-CcccCCCceEEEEEEEEEEEccchHH--HHh-----ccccChHHHHHHHHHHHHHHHcCCCCHHH
Q 023977           45 GQLSLRVQQLDVRC-ETKTKDNVFVNVVASVQYRALAEKAS--DAF-----YKLSNTRSQIQAYVFDVIRASVPKLDLDA  116 (274)
Q Consensus        45 ~~~~~r~~~~~~~~-~v~T~D~~~v~v~~~v~yrI~d~~~~--~~~-----~~~~~~~~~l~~~~~~~lR~~i~~~t~~e  116 (274)
                      .++|+|.++++++. +++|+||++|.|+++++|||.|+...  .+.     +...+++..|.+.+++++|+++|+|++++
T Consensus         8 ~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l~e   87 (143)
T d1wina_           8 QRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQ   87 (143)
T ss_dssp             CSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             eEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            47999999999998 89999999999999999999986421  111     23457888999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhh-----------ccccccccchHHHHHhHHHHHH
Q 023977          117 TFEQKNDIAKAVEEELEK-----------TLIVDIEPDEHVKRAMNEINAA  156 (274)
Q Consensus       117 l~~~R~~i~~~i~~~l~~-----------v~I~~i~~p~~i~~ai~~~~~A  156 (274)
                      ++++|++|.+.+++.+++           |.|+||++|+++.++|.+++.|
T Consensus        88 l~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          88 IYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHh
Confidence            999999999999999987           8999999999999999977655