Citrus Sinensis ID: 024000

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccccEEEEcccccEEEEEEHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHEEEEEEEHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEEcccccccccEEEEccccccEEEEEHHHHHHccc
Coil and Loop (DISEMBL)
MVFPYMEAVVGFMILMYFFETYLDLRQHAAlklpklpktlegviSQEKfeksrgysldkshfHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQltdlpfslYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLiaplfnkftplpegeLREKIEKLASSlkfplkklfvvdgstrsshsnaymygffknkrIVLYDTLIQQVKM
Flexible Loop (DISEMBL)
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Low Complexity Region (SEG)
MVFPYMEAVVGFMILMYFFETYLDLRQHaalklpklpkTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Disordered region (IsUnstruct)
**FPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ****
Disordered Region (DISOPRED)
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK*
Disordered Region (DISEMBL)
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Disordered Region (DISPRO)
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q8RX88	424	CAAX prenyl protease 1 ho	yes	no	0.996	0.643	0.860	1e-136
Q6EPN8	425	CAAX prenyl protease 1 ho	yes	no	0.996	0.642	0.813	1e-124
Q80W54	475	CAAX prenyl protease 1 ho	yes	no	0.963	0.555	0.486	1e-64
O75844	475	CAAX prenyl protease 1 ho	yes	no	0.963	0.555	0.490	4e-64
Q10071	474	Probable CAAX prenyl prot	yes	no	0.978	0.565	0.394	4e-46
Q54FH7	426	CAAX prenyl protease 1 ho	yes	no	0.948	0.610	0.394	2e-45
P47154	453	CAAX prenyl protease 1 OS	yes	no	0.978	0.591	0.411	1e-44
P40769	426	Uncharacterized metallopr	yes	no	0.609	0.392	0.267	3e-11

>sp|Q8RX88|FACE1_ARATH CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/273 (86%), Positives = 250/273 (91%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M  P+ME VVGFMI+MY FETYLDLRQ  ALKLP LPKTL GVISQEKFEKSR YSLDKS
Sbjct: 1   MAIPFMETVVGFMIVMYIFETYLDLRQLTALKLPTLPKTLVGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           +FHFVHEFVTILMDSAIL F ILPWFWK SG  L  +GLD ENEILHTLSFLAGVM WSQ
Sbjct: 61  YFHFVHEFVTILMDSAILFFGILPWFWKMSGAVLPRLGLDPENEILHTLSFLAGVMTWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIE+RHGFNKQTIW+F RDMIKG  L+++LGPPIV+AII IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMF+LSLVMMT+YPVLIAPLFNKFTPLP+G+LREKIEKLASSLKFPLKKLFVV
Sbjct: 181 LAIYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Proteolytically removes the C-terminal three residues of farnesylated proteins. The substrate specificity is only partially overlaping with that of FACE2.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 8EC: 4

>sp|Q6EPN8|FACE1_ORYSJ CAAX prenyl protease 1 homolog OS=Oryza sativa subsp. japonica GN=FACE1 PE=2 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/273 (81%), Positives = 244/273 (89%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M  PY+EAV+ FMILMY FETYLD+RQH ALKLP LPK L GVIS EKFE+SR YSLDKS
Sbjct: 1   MALPYLEAVLCFMILMYIFETYLDIRQHRALKLPTLPKPLVGVISGEKFERSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
            FHF+HE VTILMD+ IL +R+LPW WKKSG      GL+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  KFHFIHEAVTILMDTTILYYRVLPWVWKKSGELATNAGLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEA+HGFNKQTIWLF RDMIKG++L+I+LGPPIV+AIIIIVQ GGPY
Sbjct: 121 ITDLPFSLYSTFVIEAKHGFNKQTIWLFIRDMIKGILLSILLGPPIVAAIIIIVQNGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLW FMF LSLVMMT+YP++IAPLFNKFTPLPEG LREKIEKLA+SL FPLKKLFVV
Sbjct: 181 LAIYLWGFMFALSLVMMTIYPIVIAPLFNKFTPLPEGVLREKIEKLAASLSFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ  
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCS 273

Proteolytically removes the C-terminal three residues of farnesylated proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog OS=Mus musculus GN=Zmpste24 PE=1 SV=2

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/265 (48%), Positives = 178/265 (67%), Gaps = 1/265 (0%)

Query: 8   AVVGFMILMYFFETYLDLRQHAALKLP-KLPKTLEGVISQEKFEKSRGYSLDKSHFHFVH 66
           AV+ F   +Y +ET+L  RQ    K   ++P  LE ++  + FEKSR Y LDKS F F  
Sbjct: 22  AVLLFSWTVYLWETFLAQRQRRIYKTTTRVPAELEQIMDSDTFEKSRLYQLDKSTFSFWS 81

Query: 67  EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
              + +  + ILLF  +P+ W+ SG F    G   E EI+ +L FL    L+S LT LP+
Sbjct: 82  GLYSEVEGTFILLFGGIPYLWRLSGQFCSSAGFGPEYEIIQSLVFLLLATLFSALTGLPW 141

Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
           SLY+TFVIE +HGFN QT+  F +D IK  I+   +  P+ + ++ I++ GG Y  IY W
Sbjct: 142 SLYNTFVIEEKHGFNHQTLEFFMKDAIKKFIVTQCILLPVSALLLYIIKIGGDYFFIYAW 201

Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
            F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+++IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVEGSKRS 261

Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
           SHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

Proteolytically removes the C-terminal three residues of farnesylated proteins. Acts on lamin A/C.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24 PE=1 SV=2

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 130/265 (49%), Positives = 175/265 (66%), Gaps = 1/265 (0%)

Query: 8   AVVGFMILMYFFETYLDLRQHAALKLPK-LPKTLEGVISQEKFEKSRGYSLDKSHFHFVH 66
           AV+ F   +Y +ET+L  RQ    K    +P  L  ++  E FEKSR Y LDKS F F  
Sbjct: 22  AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81

Query: 67  EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
              +    + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S LT LP+
Sbjct: 82  GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPW 141

Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
           SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201

Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
            F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261

Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
           SHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

Proteolytically removes the C-terminal three residues of farnesylated proteins. Acts on lamin A/C.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|Q10071|STE24_SCHPO Probable CAAX prenyl protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.05 PE=3 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 162/276 (58%), Gaps = 8/276 (2%)

Query: 3   FPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHF 62
           FP+   + GF I  Y ++ YL  RQ   L   K P  L   + ++K++K+  Y+ DKS F
Sbjct: 46  FPWKIVIAGFSIGKYAWDLYLRRRQVPYLLREKPPAILAEHVDEKKYQKALSYARDKSWF 105

Query: 63  HFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENE-------ILHTLSFLAGV 115
             +    T+ +D  I+ +  L + W  +  F  +  L A +        I H+  F+ G+
Sbjct: 106 STIVSTFTLAVDLLIIKYDGLSYLWNIT-KFPWMDKLAASSSRFSLSTSITHSCVFMFGL 164

Query: 116 MLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQ 175
            L+S+L  +PF+LYSTFVIE ++GFNK T+ +F  D++K + L  +L   +V   + I+ 
Sbjct: 165 TLFSRLIQIPFNLYSTFVIEEKYGFNKSTLKIFVIDLLKELSLGGLLMSVVVGVFVKILT 224

Query: 176 KGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK 235
           K G    +Y W    V  L++ T+ P LI PLF KFTPL  G LR +IE+LA+S+ FPLK
Sbjct: 225 KFGDNFIMYAWGAYIVFGLILQTIAPSLIMPLFYKFTPLENGSLRTQIEELAASINFPLK 284

Query: 236 KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ 271
           KL+V+D S RS+HSNA+ YG   NK IVL+DTL++ 
Sbjct: 285 KLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKN 320

Proteolytically removes the C-terminal three residues of farnesylated proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|Q54FH7|FACE1_DICDI CAAX prenyl protease 1 homolog OS=Dictyostelium discoideum GN=zmpste24 PE=3 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/266 (39%), Positives = 152/266 (57%), Gaps = 6/266 (2%)

Query: 10  VGFMILMYFFETYLDLRQHAALK-LPKLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEF 68
           + F +L +F+  YL+ RQ   LK L K+P+  +  I+QE F+KS+ YS  K  +  +   
Sbjct: 9   ISFFLLEHFYSFYLNFRQSKLLKNLTKVPEYCKDRITQEDFKKSQEYSKAKLDYKTLTST 68

Query: 69  VTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSL 128
           + +L       + + P+FW  S      +G    NEI+ +  F A  +  S +T++PFS 
Sbjct: 69  IQVLTTLLSFYYPVYPYFWNLSLELAEKIGY--PNEIIRSCFFFAFTVGVSVITEIPFSY 126

Query: 129 YSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAF 188
           Y  F++E + G+N+ T  LF +D I   +L I  G PI+S  I I+   GP L  Y W  
Sbjct: 127 YYQFILEEKFGYNRMTRTLFIKDKIISTLLMIGFGLPILSLAIFIINWSGPQLWFYCWLL 186

Query: 189 MFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKK--LFVVDGSTRS 246
           +  ++L+ +T+YP  I PLFNKFTP+ +GEL E I  LA  + FP  K  +FVVD S R 
Sbjct: 187 LVAITLLSITIYPTFIQPLFNKFTPV-DGELAESIFALAKRVGFPASKDTIFVVDNSKRD 245

Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQV 272
            H NAY YG F  KRIVLYDTL+ ++
Sbjct: 246 GHMNAYFYGLFGTKRIVLYDTLVNEL 271

Proteolytically removes the C-terminal three residues of farnesylated proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|P47154|STE24_YEAST CAAX prenyl protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE24 PE=1 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/272 (41%), Positives = 154/272 (56%), Gaps = 4/272 (1%)

Query: 4   PYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKSHFH 63
           P+   + GF I  + FE+YL  RQ+  L   KLP  LE  I  E F KSR YS  K+ F 
Sbjct: 14  PWKLIISGFSIAQFSFESYLTYRQYQKLSETKLPPVLEDEIDDETFHKSRNYSRAKAKFS 73

Query: 64  FVHEFVTILMDSAILLFRILPWFWKKSG---NFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
              +   +      + + + P  W  +    N ++ V     + +  +L FL  +   S 
Sbjct: 74  IFGDVYNLAQKLVFIKYDLFPKIWHMAVSLLNAVLPVRFHMVSTVAQSLCFLGLLSSLST 133

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           L DLP S YS FV+E + GFNK T+ L+  DMIK + LA  +G PI+   + I  K    
Sbjct: 134 LVDLPLSYYSHFVLEEKFGFNKLTVQLWITDMIKSLTLAYAIGGPILYLFLKIFDKFPTD 193

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
              Y+  F+FV+ ++ MT+ PV I P+FNKFTPL +GEL++ IE LA  + FPL K+FV+
Sbjct: 194 FLWYIMVFLFVVQILAMTIIPVFIMPMFNKFTPLEDGELKKSIESLADRVGFPLDKIFVI 253

Query: 241 DGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQ 271
           DGS RSSHSNAY  G  F +KRIVL+DTL+  
Sbjct: 254 DGSKRSSHSNAYFTGLPFTSKRIVLFDTLVNS 285

Proteolytically removes the C-terminal three residues of farnesylated A-factor mating pheromone. Also acts to cleave the N-terminal extension of the pheromone. Does not act on Ras.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 8

EC: 4

>sp|P40769|YHFN_BACSU Uncharacterized metalloprotease YhfN OS=Bacillus subtilis (strain 168) GN=yhfN PE=3 SV=2

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 106 LHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPP 165
           L T+ F+  + L + L  LP   +  + +   +  + QT   + +D +    ++  +   
Sbjct: 101 LQTVGFVFVLSLITTLVTLPLD-WIGYQVSLDYNISTQTTASWAKDQVISFWISFPIFTL 159

Query: 166 IVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEK 225
            V     ++++      +Y W      SL +  + PV+I PL+N F PL   EL  KI +
Sbjct: 160 CVLVFYWLIKRHEKKWWLYAWLLTVPFSLFLFFIQPVIIDPLYNDFYPLKNKELESKILE 219

Query: 226 LASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           LA     P   ++ V+ S +++  NAY+ G   NKRIVL+DT + ++ 
Sbjct: 220 LADEANIPADHVYEVNMSEKTNALNAYVTGIGANKRIVLWDTTLNKLD 267

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
449432124	424	PREDICTED: CAAX prenyl protease 1 homolo	0.996	0.643	0.901	1e-142
225454328	424	PREDICTED: CAAX prenyl protease 1 homolo	0.996	0.643	0.890	1e-142
449480231	424	PREDICTED: CAAX prenyl protease 1 homolo	0.996	0.643	0.897	1e-142
224067924	424	predicted protein [Populus trichocarpa]	0.996	0.643	0.904	1e-142
224130374	424	predicted protein [Populus trichocarpa]	0.996	0.643	0.901	1e-141
255541686	424	caax prenyl protease ste24, putative [Ri	0.996	0.643	0.882	1e-140
356568433	424	PREDICTED: CAAX prenyl protease 1 homolo	0.996	0.643	0.853	1e-137
356531957	424	PREDICTED: CAAX prenyl protease 1 homolo	0.996	0.643	0.846	1e-136
357507535	426	CAAX prenyl protease-like protein [Medic	0.996	0.640	0.838	1e-135
13785909	424	CaaX processing zinc-metallo endoproteas	0.996	0.643	0.860	1e-134

>gi|449432124|ref|XP_004133850.1| PREDICTED: CAAX prenyl protease 1 homolog [Cucumis sativus]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/273 (90%), Positives = 260/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FETYLDLRQH ALKLP LPKTLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MEFPYMEAVVGFMILMYTFETYLDLRQHTALKLPTLPKTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVHEFVTI+MDSAIL F +LPWFWKKSG F+V VGL+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFHFVHEFVTIVMDSAILFFGVLPWFWKKSGEFVVFVGLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIE+RHGFNKQTIWLFFRDMIKG++L+I+LGPPIVSAIIIIVQKGGPY
Sbjct: 121 VTDLPFSLYSTFVIESRHGFNKQTIWLFFRDMIKGILLSILLGPPIVSAIIIIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMF LSLVMMTLYP+LIAPLFNKFTPLP G+LREKIEKLASSL FPLKKLFVV
Sbjct: 181 LAIYLWAFMFTLSLVMMTLYPILIAPLFNKFTPLPSGDLREKIEKLASSLNFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454328|ref|XP_002277525.1| PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera] gi|297745342|emb|CBI40422.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/273 (89%), Positives = 261/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FETYLDLRQHAALKLP LP+TLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILMYIFETYLDLRQHAALKLPTLPRTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVHE VTILMDSAIL F +LPWFWKKSG+FLV+VGL+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFHFVHECVTILMDSAILFFGVLPWFWKKSGDFLVVVGLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQTIWLFFRDM KG+ L+I+LGPPIV+AII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTIWLFFRDMFKGIGLSILLGPPIVAAIIVIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLW FMF+LS+VMMTLYP+LIAPLFNKFTPLP+GELRE+IEKLASSLKFPLKKLFVV
Sbjct: 181 LAIYLWGFMFILSIVMMTLYPILIAPLFNKFTPLPDGELRERIEKLASSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFF NKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFNNKRIVLYDTLIQQCK 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480231|ref|XP_004155836.1| PREDICTED: CAAX prenyl protease 1 homolog [Cucumis sativus]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 245/273 (89%), Positives = 260/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FETYLDLRQH ALKLP LPKTLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MEFPYMEAVVGFMILMYTFETYLDLRQHTALKLPTLPKTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVHEFVTI+MDSAIL F +LPWFWKKSG F+V VGL+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFHFVHEFVTIVMDSAILFFGVLPWFWKKSGEFVVFVGLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIE+RHGFNK+TIWLFFRDMIKG++L+I+LGPPIVSAIIIIVQKGGPY
Sbjct: 121 VTDLPFSLYSTFVIESRHGFNKETIWLFFRDMIKGILLSILLGPPIVSAIIIIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMF LSLVMMTLYP+LIAPLFNKFTPLP G+LREKIEKLASSL FPLKKLFVV
Sbjct: 181 LAIYLWAFMFTLSLVMMTLYPILIAPLFNKFTPLPSGDLREKIEKLASSLSFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067924|ref|XP_002302601.1| predicted protein [Populus trichocarpa] gi|222844327|gb|EEE81874.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/273 (90%), Positives = 261/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMYFFETYLDLRQHAALKLP LPKTLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILMYFFETYLDLRQHAALKLPSLPKTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           +F+FVHEFVTIL+DSAIL + ILPWFWKKSG+FLVLVGLD ENEI +TL+FLAGVM+WSQ
Sbjct: 61  YFNFVHEFVTILLDSAILFYAILPWFWKKSGSFLVLVGLDEENEIFNTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQT WLFFRD+ KG+ L+I+LGPPIVSAII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTTWLFFRDLFKGICLSILLGPPIVSAIILIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLA SLKFPLKKLFVV
Sbjct: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLAFSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130374|ref|XP_002320821.1| predicted protein [Populus trichocarpa] gi|222861594|gb|EEE99136.1| predicted protein [Populus trichocarpa]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/273 (90%), Positives = 260/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMIL+YFFETYLDLRQ AALKLP LPKTL GVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILVYFFETYLDLRQRAALKLPILPKTLVGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HF+FVHEFVTIL+DSAIL + ILPWFWKKSG+F+VL G + ENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFNFVHEFVTILLDSAILFYGILPWFWKKSGSFVVLAGFNEENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQTIWLFFRD+ KG+ LAI+LGPPIVSAII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTIWLFFRDLFKGICLAILLGPPIVSAIILIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV
Sbjct: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541686|ref|XP_002511907.1| caax prenyl protease ste24, putative [Ricinus communis] gi|223549087|gb|EEF50576.1| caax prenyl protease ste24, putative [Ricinus communis]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/273 (88%), Positives = 261/273 (95%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAV+GFM+LMY FE+YLD+RQH ALKLP LPKTLEGVISQEKF+KSR YSLDKS
Sbjct: 1   MAFPYMEAVLGFMVLMYIFESYLDMRQHCALKLPTLPKTLEGVISQEKFKKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HF+FVHEFVTIL+DSAIL F ILPW WK+SGNFL+LVGL+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFNFVHEFVTILLDSAILYFGILPWSWKESGNFLLLVGLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQTIWLFFRD+IKG+ LAI+LGPPIVSAII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTIWLFFRDLIKGICLAIILGPPIVSAIILIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMFVLSLVMMT+YP+LIAPLFNKFTPLPEGELR KIE L+SSLKFPLKKLFVV
Sbjct: 181 LAIYLWAFMFVLSLVMMTIYPILIAPLFNKFTPLPEGELRSKIEALSSSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568433|ref|XP_003552415.1| PREDICTED: CAAX prenyl protease 1 homolog [Glycine max]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/273 (85%), Positives = 256/273 (93%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FETYLD+RQH+ALKLP LPKTLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILMYIFETYLDVRQHSALKLPTLPKTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVHEFVTI++DS IL F +LPWFWK SG+F+ +  L+AENEILHTL+FLAGVM+WSQ
Sbjct: 61  HFHFVHEFVTIVIDSTILYFGVLPWFWKISGDFMTIASLNAENEILHTLAFLAGVMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQT WLFFRDMIKG+ L++++GPPIV+AII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTPWLFFRDMIKGIFLSVIIGPPIVAAIIVIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAF F LS+VMMTLYPVLIAPLFNKFTPLP+G+LREKIEKLASSL +PLKKLFVV
Sbjct: 181 LAIYLWAFTFGLSIVMMTLYPVLIAPLFNKFTPLPDGQLREKIEKLASSLNYPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531957|ref|XP_003534542.1| PREDICTED: CAAX prenyl protease 1 homolog [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/273 (84%), Positives = 254/273 (93%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FETYLD+RQH ALKLP LPKTLEGVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILMYIFETYLDVRQHRALKLPTLPKTLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVHEFVTI+ DS IL F +LPWFWKKSG+F+ + G +AENEILHTL+FLAG+M+WSQ
Sbjct: 61  HFHFVHEFVTIVTDSTILYFGVLPWFWKKSGDFMTIAGFNAENEILHTLAFLAGLMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIEARHGFNKQT WLFFRDM+KG+ L++++GPPIV+AII+IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIEARHGFNKQTPWLFFRDMLKGIFLSVIIGPPIVAAIIVIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLW F F LS+VMMTLYPVLIAPLFNKFTPLP+G+LREKIEKLASSL +PLKKLFVV
Sbjct: 181 LAIYLWVFTFGLSIVMMTLYPVLIAPLFNKFTPLPDGQLREKIEKLASSLNYPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507535|ref|XP_003624056.1| CAAX prenyl protease-like protein [Medicago truncatula] gi|355499071|gb|AES80274.1| CAAX prenyl protease-like protein [Medicago truncatula]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/273 (83%), Positives = 252/273 (92%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M FPYMEAVVGFMILMY FE+YLDLRQH ALKLP LPK+LEGVISQEKFEKSR YSLDKS
Sbjct: 1   MAFPYMEAVVGFMILMYIFESYLDLRQHKALKLPTLPKSLEGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           HFHFVH  VTI+ DS IL F++LPWFWKKSG+F+ L GL+AENEI HTL FLAG+M+WSQ
Sbjct: 61  HFHFVHALVTIITDSTILYFKVLPWFWKKSGDFVTLAGLNAENEIFHTLGFLAGLMIWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
            TDLPFSLYSTFVIE+RHGFNKQT WLFFRDMIKG+ L+I++GPP+V+AII+IVQKGGPY
Sbjct: 121 TTDLPFSLYSTFVIESRHGFNKQTPWLFFRDMIKGIFLSIIIGPPVVAAIIVIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMF LSLVM+T+YP+LIAPLFNKFTPLP+G LREKIEKLASSL FPLKKLFVV
Sbjct: 181 LAIYLWAFMFGLSLVMLTIYPILIAPLFNKFTPLPDGPLREKIEKLASSLNFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTL+QQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLVQQCK 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13785909|gb|AAK39514.1|AF353722_1 CaaX processing zinc-metallo endoprotease [Arabidopsis thaliana]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/273 (86%), Positives = 250/273 (91%)

Query: 1   MVFPYMEAVVGFMILMYFFETYLDLRQHAALKLPKLPKTLEGVISQEKFEKSRGYSLDKS 60
           M  P+ME VVGFMI+MY FETYLDLRQ  ALKLP LPKTL GVISQEKFEKSR YSLDKS
Sbjct: 1   MAIPFMETVVGFMIVMYIFETYLDLRQLTALKLPTLPKTLVGVISQEKFEKSRAYSLDKS 60

Query: 61  HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
           +FHFVHEFVTILMDSAIL F ILPWFWK SG  L  +GLD ENEILHTLSFLAGVM WSQ
Sbjct: 61  YFHFVHEFVTILMDSAILFFGILPWFWKMSGAVLPRLGLDPENEILHTLSFLAGVMTWSQ 120

Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           +TDLPFSLYSTFVIE+RHGFNKQTIW+F RDMIKG  L+++LGPPIV+AII IVQKGGPY
Sbjct: 121 ITDLPFSLYSTFVIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQKGGPY 180

Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
           LAIYLWAFMF+LSLVMMT+YPVLIAPLFNKFTPLP+G+LREKIEKLASSLKFPLKKLFVV
Sbjct: 181 LAIYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLKKLFVV 240

Query: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
           DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct: 241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2124983	424	ATSTE24 [Arabidopsis thaliana	0.996	0.643	0.831	3.2e-120
RGD|1305570	475	Zmpste24 "zinc metallopeptidas	0.981	0.566	0.470	9e-61
MGI|MGI:1890508	475	Zmpste24 "zinc metallopeptidas	0.981	0.566	0.467	1.2e-60
UNIPROTKB|F1PY82	473	ZMPSTE24 "Uncharacterized prot	0.963	0.558	0.479	1.9e-60
UNIPROTKB|E1BMF2	475	ZMPSTE24 "Uncharacterized prot	0.963	0.555	0.479	2.4e-60
UNIPROTKB|O75844	475	ZMPSTE24 "CAAX prenyl protease	0.963	0.555	0.483	2.4e-60
ZFIN|ZDB-GENE-030131-6312	468	zmpste24 "zinc metallopeptidas	0.959	0.561	0.477	3.9e-60
UNIPROTKB|F1NDA2	468	ZMPSTE24 "Uncharacterized prot	0.959	0.561	0.473	4e-58
ASPGD|ASPL0000071441	456	AN11231 [Emericella nidulans (	0.978	0.587	0.428	4.9e-53
CGD|CAL0000665	456	STE24 [Candida albicans (taxid	0.956	0.574	0.439	6.3e-53

TAIR|locus:2124983 ATSTE24 [Arabidopsis thaliana (taxid:3702)]

 Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
 Identities = 227/273 (83%), Positives = 242/273 (88%)

Query:     1 MVFPYMEAVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEGVISQEKFEKSRGYSLDKS 60
             M  P+ME VVGFMI+MY FETYLDLRQ           TL GVISQEKFEKSR YSLDKS
Sbjct:     1 MAIPFMETVVGFMIVMYIFETYLDLRQLTALKLPTLPKTLVGVISQEKFEKSRAYSLDKS 60

Query:    61 HFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
             +FHFVHEFVTILMDSAIL F ILPWFWK SG  L  +GLD ENEILHTLSFLAGVM WSQ
Sbjct:    61 YFHFVHEFVTILMDSAILFFGILPWFWKMSGAVLPRLGLDPENEILHTLSFLAGVMTWSQ 120

Query:   121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
             +TDLPFSLYSTFVIE+RHGFNKQTIW+F RDMIKG  L+++LGPPIV+AII IVQKGGPY
Sbjct:   121 ITDLPFSLYSTFVIESRHGFNKQTIWMFIRDMIKGTFLSVILGPPIVAAIIFIVQKGGPY 180

Query:   181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
             LAIYLWAFMF+LSLVMMT+YPVLIAPLFNKFTPLP+G+LREKIEKLASSLKFPLKKLFVV
Sbjct:   181 LAIYLWAFMFILSLVMMTIYPVLIAPLFNKFTPLPDGDLREKIEKLASSLKFPLKKLFVV 240

Query:   241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQVK 273
             DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ K
Sbjct:   241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQCK 273

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0080120 "CAAX-box protein maturation" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

RGD|1305570 Zmpste24 "zinc metallopeptidase STE24" [Rattus norvegicus (taxid:10116)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 129/274 (47%), Positives = 178/274 (64%)

Query:     3 FPYMEAVVGFMIL----MYFFETYLDLRQHXXXXXXXXXXT-LEGVISQEKFEKSRGYSL 57
             FP  + + G ++L    +Y +ET+L  RQ             LE ++  + FEKSR Y L
Sbjct:    13 FPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELEQIMDSDTFEKSRLYQL 72

Query:    58 DKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVML 117
             DKS F F     + +  + ILLF  +P+ W+ SG F    G   E EI+ +L FL    L
Sbjct:    73 DKSTFSFWSGLYSEVEGTFILLFGGIPYLWRLSGRFCSSAGFGPEYEIIQSLVFLLLATL 132

Query:   118 WSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKG 177
             +S LT LP+SLY+TFVIE +HGFN QT+  F +D IK  I+   +  P+ S ++ I++ G
Sbjct:   133 FSALTGLPWSLYNTFVIEEKHGFNHQTLEFFMKDAIKKFIVTQCILLPVSSLLLYIIKIG 192

Query:   178 GPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237
             G Y  IY W F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+++IE +A S+ FPL K+
Sbjct:   193 GDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKV 252

Query:   238 FVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ 271
             +VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++
Sbjct:   253 YVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEE 286

GO:0003674 "molecular_function" evidence=ND

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006998 "nuclear envelope organization" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0030327 "prenylated protein catabolic process" evidence=IEA;ISO

GO:0071586 "CAAX-box protein processing" evidence=IEA

MGI|MGI:1890508 Zmpste24 "zinc metallopeptidase, STE24" [Mus musculus (taxid:10090)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 128/274 (46%), Positives = 178/274 (64%)

Query:     3 FPYMEAVVGFMIL----MYFFETYLDLRQHXXXXXXXXX-XTLEGVISQEKFEKSRGYSL 57
             FP  + + G ++L    +Y +ET+L  RQ             LE ++  + FEKSR Y L
Sbjct:    13 FPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTRVPAELEQIMDSDTFEKSRLYQL 72

Query:    58 DKSHFHFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVML 117
             DKS F F     + +  + ILLF  +P+ W+ SG F    G   E EI+ +L FL    L
Sbjct:    73 DKSTFSFWSGLYSEVEGTFILLFGGIPYLWRLSGQFCSSAGFGPEYEIIQSLVFLLLATL 132

Query:   118 WSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKG 177
             +S LT LP+SLY+TFVIE +HGFN QT+  F +D IK  I+   +  P+ + ++ I++ G
Sbjct:   133 FSALTGLPWSLYNTFVIEEKHGFNHQTLEFFMKDAIKKFIVTQCILLPVSALLLYIIKIG 192

Query:   178 GPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKL 237
             G Y  IY W F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+++IE +A S+ FPL K+
Sbjct:   193 GDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKV 252

Query:   238 FVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ 271
             +VV+GS RSSHSNAY YGFFKNKRIVL+DTL+++
Sbjct:   253 YVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEE 286

GO:0004222 "metalloendopeptidase activity" evidence=IMP;IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IGI;IMP

GO:0008152 "metabolic process" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PY82 ZMPSTE24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 127/265 (47%), Positives = 173/265 (65%)

Query:     8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEG-VISQEKFEKSRGYSLDKSHFHFVH 66
             AV+ F   +Y +ET+L  RQ              G ++  E FEKSR Y LDKS F F  
Sbjct:    20 AVLLFSWTVYLWETFLAQRQRRIYKTTTRVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 79

Query:    67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
                + +  + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S LT LP+
Sbjct:    80 GLYSEIEGTLILLFGGIPYLWRLSGRFCGYAGFGTEYEITQSLVFLLLATLFSALTGLPW 139

Query:   127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
             SLY+TFVIE +HGFN+QT+  F +D +K  I+   +  P+ S ++ I++ GG Y  IY W
Sbjct:   140 SLYNTFVIEEKHGFNQQTLGFFMKDAVKKFIVTQCILLPVSSLLLYIIKIGGDYFFIYAW 199

Query:   187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
              F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+++IE +A S+ FPL K++VV+GS RS
Sbjct:   200 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVEGSKRS 259

Query:   247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
             SHSNAY YGFFKNKRIVL+DTL+++
Sbjct:   260 SHSNAYFYGFFKNKRIVLFDTLLEE 284

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0071586 "CAAX-box protein processing" evidence=IEA

UNIPROTKB|E1BMF2 ZMPSTE24 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 127/265 (47%), Positives = 173/265 (65%)

Query:     8 AVVGFMILMYFFETYLDLRQHXXXXXXXXX-XTLEGVISQEKFEKSRGYSLDKSHFHFVH 66
             AV+ F   +Y +ET+L  RQ             L  ++  E FEKSR Y LDKS F F  
Sbjct:    22 AVLLFSWTVYLWETFLAQRQRRVYKTTTHVPLELGQIMDSETFEKSRLYQLDKSTFSFWS 81

Query:    67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
                + +  + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S LT LP+
Sbjct:    82 GLYSEVEGTLILLFGGIPYLWRVSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPW 141

Query:   127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
             SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct:   142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201

Query:   187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
              F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+++IE +A S+ FPL K++VV+GS RS
Sbjct:   202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVEGSKRS 261

Query:   247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
             SHSNAY YGFFKNKRIVL+DTL+++
Sbjct:   262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0071586 "CAAX-box protein processing" evidence=IEA

UNIPROTKB|O75844 ZMPSTE24 "CAAX prenyl protease 1 homolog" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 128/265 (48%), Positives = 172/265 (64%)

Query:     8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEG-VISQEKFEKSRGYSLDKSHFHFVH 66
             AV+ F   +Y +ET+L  RQ              G ++  E FEKSR Y LDKS F F  
Sbjct:    22 AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81

Query:    67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
                +    + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S LT LP+
Sbjct:    82 GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPW 141

Query:   127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
             SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct:   142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201

Query:   187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
              F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct:   202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261

Query:   247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
             SHSNAY YGFFKNKRIVL+DTL+++
Sbjct:   262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

GO:0071586 "CAAX-box protein processing" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=TAS

GO:0008235 "metalloexopeptidase activity" evidence=TAS

ZFIN|ZDB-GENE-030131-6312 zmpste24 "zinc metallopeptidase, STE24 homolog" [Danio rerio (taxid:7955)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 126/264 (47%), Positives = 169/264 (64%)

Query:     8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEG-VISQEKFEKSRGYSLDKSHFHFVH 66
             AV+ F   +Y +E YL  RQ           T  G ++  E FEKSR Y LDKS+F F  
Sbjct:    17 AVLFFSWTVYVWEAYLAYRQRKIYRATVHVPTELGKIMDSETFEKSRLYQLDKSNFGFWS 76

Query:    67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
                +    + ILL   +P+ WK SG+     G   E EI  +L FL    L+S  T LP+
Sbjct:    77 GLYSEFEGTLILLLGGIPFLWKLSGHLTAHFGFGPEYEISQSLVFLMLATLFSAFTGLPW 136

Query:   127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
             SLY+TFVIE +HGFN+QT+  F +D +K   +   +  P+ S ++ I++ GG Y  IY W
Sbjct:   137 SLYNTFVIEEKHGFNQQTLGFFLKDALKKFAVTQCILVPVTSLLLYIIKIGGDYFFIYAW 196

Query:   187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
              F F++SL+++T+Y   IAPLF+KFTPLP+GELR +IE +A S+ FPL KL+VV+GS RS
Sbjct:   197 LFTFIVSLILVTIYADYIAPLFDKFTPLPDGELRSEIESMAKSISFPLTKLYVVEGSKRS 256

Query:   247 SHSNAYMYGFFKNKRIVLYDTLIQ 270
             SHSNAY YGFFKNKRIVL+DTL++
Sbjct:   257 SHSNAYFYGFFKNKRIVLFDTLLE 280

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0071586 "CAAX-box protein processing" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|F1NDA2 ZMPSTE24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 125/264 (47%), Positives = 169/264 (64%)

Query:     8 AVVGFMILMYFFETYLDLRQHXXXXXXXXXX-TLEGVISQEKFEKSRGYSLDKSHFHFVH 66
             +V+ F   +Y +E +L  RQ             L  ++  E FEKSR Y LDKS F F  
Sbjct:    23 SVLLFSWAVYLWEAFLAHRQRRVYRTTTHVPWELGQIMDSETFEKSRLYQLDKSTFSFWS 82

Query:    67 EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
                + L  + IL+   +P+ W  SG      G   E EI+ +L FL    L+S LT LP+
Sbjct:    83 GLYSELEGTMILICGGIPFLWNLSGQISGRAGFGPEYEIVQSLVFLLLATLFSALTGLPW 142

Query:   127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
             SLY+TFVIE +HGFN+QT+  FF+D IK  I+   +  P+ S ++ I++ GG Y  IY W
Sbjct:   143 SLYNTFVIEEKHGFNQQTLGFFFKDAIKKFIVTQCILLPVTSLLLYIIKIGGDYFFIYAW 202

Query:   187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
              F  V+SLV++T+Y   IAPLF+KF PLPEGEL+++IE +A S+ FPL K++VV+GS RS
Sbjct:   203 LFTLVVSLVLVTIYADYIAPLFDKFIPLPEGELKQQIEVMAKSIDFPLTKVYVVEGSKRS 262

Query:   247 SHSNAYMYGFFKNKRIVLYDTLIQ 270
             SHSNAY YGFFKNKRIVL+DTL++
Sbjct:   263 SHSNAYFYGFFKNKRIVLFDTLLE 286

GO:0071586 "CAAX-box protein processing" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006998 "nuclear envelope organization" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IEA

ASPGD|ASPL0000071441 AN11231 [Emericella nidulans (taxid:162425)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 116/271 (42%), Positives = 162/271 (59%)

Query:     3 FPYMEAVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEGVISQEKFEKSRGYSLDKSHF 62
             FP+   +VGF +  +  E  L  RQ+           LEG +SQ+ +++S+ Y   K+ F
Sbjct:    16 FPWKNVLVGFSLGQFILEGILSFRQYKVLQRTKAPKVLEGEVSQKVYDQSQAYGRAKAKF 75

Query:    63 HFVHEFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDA--ENEILHTLSFLAGVMLWSQ 120
              F+      + + A +   +LP  W  SG FL+   L A  + EI  TL FL G  L S 
Sbjct:    76 GFISGLYGQIQNLAFIYGDVLPKLWGLSG-FLLAQYLPARFQGEIPQTLLFLFGFNLIST 134

Query:   121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
             +  LP S Y+TFV+E + GFNKQT+ L+  DM+KG +L IVLG PI+SA++ IVQK G  
Sbjct:   135 VLSLPISYYNTFVLEEKFGFNKQTVKLWVSDMLKGQMLGIVLGAPIISAVLKIVQKTGTS 194

Query:   181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
                YLW F   + +  +T+YP+ I PLFNK +PL  G ++  +E LA  L FPL++L V+
Sbjct:   195 CFYYLWLFGVFVQVFAITIYPIAILPLFNKLSPLEPGAIKTGVENLAKKLNFPLQELHVI 254

Query:   241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQ 271
             DGS RS+HSNAY YG    K IV+YDTLI++
Sbjct:   255 DGSKRSAHSNAYFYGLPWKKHIVIYDTLIEK 285

GO:0006508 "proteolysis" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0007323 "peptide pheromone maturation" evidence=IEA

GO:0071586 "CAAX-box protein processing" evidence=IEA

CGD|CAL0000665 STE24 [Candida albicans (taxid:5476)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 117/266 (43%), Positives = 161/266 (60%)

Query:     9 VVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEGVISQEKFEKSRGYSLDKSHFHFVHEF 68
             +VGF I  Y FETYLDLRQ+          ++E  +SQE F+KS+ YS  K+ F      
Sbjct:    33 IVGFTIGQYVFETYLDLRQYRVLQSKTAPKSIEKEVSQETFDKSQEYSRAKAQFSVFSST 92

Query:    69 VTILMDSAILLFRILPWFWKKSGNFL----VLVGLDAENEILHTLSFLAGVMLWSQLTDL 124
              ++L + AI  + +LP  W  +G  +     ++       I  +L F+    + + L  L
Sbjct:    93 FSLLQNLAIFKYDLLPKTWTLAGTIMKSSAAVLPKAMSGVITQSLFFVFTTQILTTLIGL 152

Query:   125 PFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIY 184
             P S Y  FV+E R GFNKQTI L+  DM+KG+ ++IVLG P+++  + I+         Y
Sbjct:   153 PLSYYKNFVLEERFGFNKQTIGLWVSDMLKGIGISIVLGSPVIAGFLKIIDYFDDKFIFY 212

Query:   185 LWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGST 244
             L  F+ V++L+ MT+ P LI PLFNKFTPL +GEL+  IEKLA   KFPL KLFV+DGS 
Sbjct:   213 LMGFILVVNLIAMTIVPTLIMPLFNKFTPLEDGELKTAIEKLALEQKFPLTKLFVIDGSK 272

Query:   245 RSSHSNAYMYGFFKNKRIVLYDTLIQ 270
             RSSHSNAY  G   +K+IVL+DTLI+
Sbjct:   273 RSSHSNAYFTGLPWSKQIVLFDTLIE 298

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0007323 "peptide pheromone maturation" evidence=IEA

GO:0071586 "CAAX-box protein processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RX88	FACE1_ARATH	3, ., 4, ., 2, 4, ., 8, 4	0.8608	0.9963	0.6438	yes	no
Q6EPN8	FACE1_ORYSJ	3, ., 4, ., 2, 4, ., 8, 4	0.8131	0.9963	0.6423	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.84	0.946
3rd Layer	3.4.24	0.963

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026916001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (424 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017340001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (190 aa)	•			•					0.653
	GSVIVG00033164001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (188 aa)				•	•				0.596
	GSVIVG00019996001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (157 aa)					•				0.558
	GSVIVG00017570001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa)	•								0.511
	GSVIVG00021630001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (316 aa)					•		•		0.505
	GSVIVG00026401001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (468 aa)	•								0.497
	GSVIVG00003662001	SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (1159 aa)					•		•		0.480
	GSVIVG00007091001	SubName- Full=Chromosome undetermined scaffold_183, whole genome shotgun sequence; (90 aa)					•		•		0.461
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)	•								0.418
	GSVIVG00030247001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (458 aa)							•		0.407

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam01435	223	pfam01435, Peptidase_M48, Peptidase family M48	4e-20
PTZ00029	216	PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr	0.003

>gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48

 Score = 86.0 bits (213), Expect = 4e-20
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKF-TPLPEGELREKIEKLASS--LKFPLKKLFVVDGS 243
           A + + SLV+ T+    IA L N F TPL    L+  +E+LA S    FP  +++VVD  
Sbjct: 1   ALLLLSSLVLATIGAPYIAQLLNGFPTPLRNARLQRVVERLADSAGAGFPPWEVYVVD-- 58

Query: 244 TRSSHSNAYMYGFFKNKRIVLYDTLIQQV 272
             S   NA+  G  KNKR+V+   L+  +
Sbjct: 59  --SPQPNAFALGGGKNKRVVVTTGLLLAL 85

Length = 223

>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 189 MFVLSLVMMTLYPVLIAPLFNKF----TPLPEGE-LREKIEKLASSLKFPLKK 236
            F+ S  ++   P L+ P  NK     T +   + + +KI +L SS+KF LKK
Sbjct: 108 AFLASQSLLPQIPRLLGPGLNKAGKFPTLITHNDDIEDKINELKSSVKFQLKK 160

Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG2719	428	consensus Metalloprotease [General function predic	100.0
PRK03001	283	M48 family peptidase; Provisional	99.8
PRK03982	288	heat shock protein HtpX; Provisional	99.73
PRK01265	324	heat shock protein HtpX; Provisional	99.53
PRK04897	298	heat shock protein HtpX; Provisional	99.27
PRK01345	317	heat shock protein HtpX; Provisional	99.25
PRK02391	296	heat shock protein HtpX; Provisional	99.23
PRK02870	336	heat shock protein HtpX; Provisional	99.07
PRK03072	288	heat shock protein HtpX; Provisional	99.0
PF01435	226	Peptidase_M48: Peptidase family M48 This is family	98.99
PRK05457	284	heat shock protein HtpX; Provisional	98.87
COG0501	302	HtpX Zn-dependent protease with chaperone function	96.66
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	83.39

>KOG2719 consensus Metalloprotease [General function prediction only]

Probab=100.00  E-value=1.5e-62  Score=462.03  Aligned_cols=263  Identities=52%  Similarity=0.870  Sum_probs=254.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhcccCCHHHHHHHHHHhhhhhhHHhHHHHHHH-HHHHHHHHh
Q 024000            3 FPYMEAVVGFMILMYFFETYLDLRQHAALKLP-KLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTI-LMDSAILLF   80 (274)
Q Consensus         3 ~~~~~~~~~~~~~~~l~e~yL~~rq~~~~~~~-~vP~~l~~~~~~e~~~ka~~Y~~~k~~~~~~~~~~~~-~~~~~~l~~   80 (274)
                      .+|+.+++++++..+.||+|++.||.++++++ .+|+++++.+|+|+++|||+|+++|..++.++...+. ...+..+++
T Consensus         6 ~~~~~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l~~L~~   85 (428)
T KOG2719|consen    6 MCRKSIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLLLELYL   85 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999887 4999999999999999999999999999999999999 899999999


Q ss_pred             chHHHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhcccchhhhhhheeeccCCCCCCCHHHHHHHHHHHHHHHH
Q 024000           81 RILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAI  160 (274)
Q Consensus        81 g~~~~lw~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~li~LPf~~Y~~f~le~kyGfn~~t~~~f~~D~~k~~~l~~  160 (274)
                      |.+|++|+.+++...+     .++++++++|+.+++.+++++++|+++|++|++|+|||+|+||.+.|+.|.+|+.++++
T Consensus        86 g~~~~lw~lt~~~~~~-----~~~~~~s~vF~~~~s~~~~l~~LP~~iys~fvie~~~gfnk~t~~~~~~d~lk~~~v~~  160 (428)
T KOG2719|consen   86 GALPFLWKLTGKFLGK-----AGEIWLSLVFLLLLSIYSTLLDLPSSIYSTFVLEEKHGFNKQTLSLFIIDGLKSLLVGV  160 (428)
T ss_pred             hHHHHHHHHHHHHhhh-----hhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHhhcCCCcCcchhHHHHHHHHHHHHH
Confidence            9999999999887655     34899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCChhHHHHHHHHHHhcCCCCCceEEE
Q 024000          161 VLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV  240 (274)
Q Consensus       161 vl~~~l~~~~~~i~~~~g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~  240 (274)
                      +++.|+++++.+++.++|+++.+|+|++.++++++++.++|.+|+|+|||++|||||+||++||+||++.|||.++++|+
T Consensus       161 ~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi  240 (428)
T KOG2719|consen  161 VLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTPLEEGDLKEKIERLADSVGFPLSKYRVI  240 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCchHHHHHHHHHhcCCCceEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcceeeeCCCCCceEeeehhhhh
Q 024000          241 DGSTRSSHSNAYMYGFFKNKRIVLYDTLIQ  270 (274)
Q Consensus       241 d~S~rs~~sNAyf~G~g~~kRIVL~DTLl~  270 (274)
                      |||||++||||||+|+|++|||||||||+.
T Consensus       241 ~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~  270 (428)
T KOG2719|consen  241 DGSKRSSHSNAYFYGLCKNKRIVIYDTLLL  270 (428)
T ss_pred             ecCCCCCCCCeeeeeccccceEEEehhhhh
Confidence            999999999999999999999999999993

>PRK03001 M48 family peptidase; Provisional

Probab=99.80  E-value=5.2e-19  Score=162.22  Aligned_cols=115  Identities=12%  Similarity=0.249  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCCh---hHHHHHHHHH
Q 024000          151 DMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEG---ELREKIEKLA  227 (274)
Q Consensus       151 D~~k~~~l~~vl~~~l~~~~~~i~~~~g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg---~L~~~I~~La  227 (274)
                      |.+|+.++..+++++++.+.+++.   |..+|+++|++.+++++++.+++|.++.|+||+ +|++|+   +|++.++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la   77 (283)
T PRK03001          2 NWVKTAMLMAAITALFIVIGGMIG---GSQGMLIALLFALGMNFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELA   77 (283)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHH
Confidence            789999999999999999988886   466699999999999999999999999999999 889884   8999999999


Q ss_pred             HhcCCCCCceEEEeCCCCCCCcceeeeCCCCCc-eEeeehhhhhhcC
Q 024000          228 SSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNK-RIVLYDTLIQQVK  273 (274)
Q Consensus       228 ~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~k-RIVL~DTLl~~~~  273 (274)
                      +++|+|..+||++|+    ++.|||++|.+++| |||++|+|+++++
T Consensus        78 ~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~Ivvt~gLl~~l~  120 (283)
T PRK03001         78 QRAGLPMPKVYLINE----DQPNAFATGRNPEHAAVAATTGILRVLS  120 (283)
T ss_pred             HHcCCCCCeEEEecC----CCcceEEecCCCCCeEEEecHHHHhhCC
Confidence            999999999999995    58999999999865 7999999999764

>PRK03982 heat shock protein HtpX; Provisional

Probab=99.73  E-value=3.8e-17  Score=150.25  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCC---ChhHHHHHHHH
Q 024000          150 RDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLP---EGELREKIEKL  226 (274)
Q Consensus       150 ~D~~k~~~l~~vl~~~l~~~~~~i~~~~g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~---dg~L~~~I~~L  226 (274)
                      .|.+|+.++..+++++++++.+.   ..|..||++++++.+++.++ ++++|..|.|.+++++|++   +++|+++++++
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~l   77 (288)
T PRK03982          2 MNQLKTGLLMALLTGLLYAIGYL---LGGSIGPIIAILLALIPNLI-SYYYSDKIVLASYNARIVSEEEAPELYRIVERL   77 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH---HhchhHHHHHHHHHHHHHHH-HHHHhHHHHHHhcCCEECChhhhHHHHHHHHHH
Confidence            58899999998888887777663   34788999999998888777 8999999999999999994   56699999999


Q ss_pred             HHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCce-EeeehhhhhhcC
Q 024000          227 ASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKR-IVLYDTLIQQVK  273 (274)
Q Consensus       227 a~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kR-IVL~DTLl~~~~  273 (274)
                      |+++|+|..+||++|+    ++.|||++|.+++|+ |+++|+|+++++
T Consensus        78 a~~~g~~~p~v~v~~~----~~~NAfa~G~~~~~~~V~vt~gLl~~l~  121 (288)
T PRK03982         78 AERANIPKPKVAIVPT----QTPNAFATGRDPKHAVVAVTEGILNLLN  121 (288)
T ss_pred             HHHcCCCCCeEEEEeC----CCcceEEeccCCCCeEEEeehHHHhhCC
Confidence            9999999999999994    478999999998665 569999998764

>PRK01265 heat shock protein HtpX; Provisional

Probab=99.53  E-value=2e-13  Score=127.29  Aligned_cols=83  Identities=24%  Similarity=0.414  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcc--cCccCC--ChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCC-CCce
Q 024000          187 AFMFVLSLVMMTLYPVLIAPLFN--KFTPLP--EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFF-KNKR  261 (274)
Q Consensus       187 ~~~~~~~~~~~~l~P~~i~PLFn--kf~PL~--dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g-~~kR  261 (274)
                      ++.+++.++..+++|.++.|+||  +++|.+  +++|++.++++|+++|+|..+||++|+|    +.|||.+|.| ++||
T Consensus        49 ~~~~~~~~~~~~~sp~li~~~~~a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~----~~NAfa~G~~~~~~~  124 (324)
T PRK01265         49 IFVFFLNIIQWLFGPYMINAAYRTVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVP----FPNAFAYGSPIAGKR  124 (324)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCC----CCCeEEeccCCCCCE
Confidence            34456678889999999999997  999998  7999999999999999999999999965    4999999997 4799


Q ss_pred             EeeehhhhhhcC
Q 024000          262 IVLYDTLIQQVK  273 (274)
Q Consensus       262 IVL~DTLl~~~~  273 (274)
                      ||++|+|+++++
T Consensus       125 Ivvt~gLl~~l~  136 (324)
T PRK01265        125 IAITLPLLKILN  136 (324)
T ss_pred             EEEehHHHhhCC
Confidence            999999999865

>PRK04897 heat shock protein HtpX; Provisional

Probab=99.27  E-value=9.2e-11  Score=108.56  Aligned_cols=79  Identities=18%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHhhhhcccCccC---CChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCce-Eeeeh
Q 024000          191 VLSLVMMTLYPVLIAPLFNKFTPL---PEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKR-IVLYD  266 (274)
Q Consensus       191 ~~~~~~~~l~P~~i~PLFnkf~PL---~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kR-IVL~D  266 (274)
                      +...+.++.++.-+..-+++.+|+   ++++|++.|+++|+++|+|..+||++|+    ++.|||.+|.+++|+ |++.|
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip~p~v~v~~~----~~~NAfa~G~~~~~~~v~vt~  126 (298)
T PRK04897         51 VIYALIMIFQSTNVVMSMNHAREVTEEEAPELWHIVEDMAMVAQIPMPRVFIIDD----PSPNAFATGSSPKNAAVAVTT  126 (298)
T ss_pred             HHHHHHHHHhhHHHHHHhCCCEECChhhhHHHHHHHHHHHHHcCCCCCcEEEecC----CCCceEEeccCCCCcEEEeeh
Confidence            334455666666777789999999   5678999999999999999999999994    469999999998776 56666


Q ss_pred             hhhhhcC
Q 024000          267 TLIQQVK  273 (274)
Q Consensus       267 TLl~~~~  273 (274)
                      +|+++++
T Consensus       127 gLl~~l~  133 (298)
T PRK04897        127 GLLAIMN  133 (298)
T ss_pred             HHHhhCC
Confidence            7988764

>PRK01345 heat shock protein HtpX; Provisional

Probab=99.25  E-value=1.5e-10  Score=107.97  Aligned_cols=86  Identities=16%  Similarity=0.261  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccc--CccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCC-Cc
Q 024000          184 YLWAFMFVLSLVMMTLYPVLIAPLFNK--FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFK-NK  260 (274)
Q Consensus       184 ~~w~~~~~~~~~~~~l~P~~i~PLFnk--f~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~-~k  260 (274)
                      ...++.+++.++..+..|.++.|.++.  .+|.++++|++.++++|+++|+|..+||++|    +.+.|||.+|.++ ++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid----~~~~NAFa~G~~~~~~  107 (317)
T PRK01345         32 IALVIAAGMNLFSYWNSDKMVLRMYGAQEVDERSAPELYRMVRDLARRAGLPMPKVYIID----NPQPNAFATGRNPENA  107 (317)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHcCCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEc----CCCcceEEecCCCCCe
Confidence            345566677888889999999999986  8899999999999999999999999999999    4679999999976 56


Q ss_pred             eEeeehhhhhhcC
Q 024000          261 RIVLYDTLIQQVK  273 (274)
Q Consensus       261 RIVL~DTLl~~~~  273 (274)
                      +|++.|+|+++++
T Consensus       108 ~V~vt~gLL~~L~  120 (317)
T PRK01345        108 AVAATTGLLQRLS  120 (317)
T ss_pred             EEEechHHHhhCC
Confidence            8999999998764

>PRK02391 heat shock protein HtpX; Provisional

Probab=99.23  E-value=2.2e-10  Score=106.00  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc--ccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCceE
Q 024000          185 LWAFMFVLSLVMMTLYPVLIAPLF--NKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRI  262 (274)
Q Consensus       185 ~w~~~~~~~~~~~~l~P~~i~PLF--nkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRI  262 (274)
                      +.++.+++.++..+..|.++.-..  .+.+|.|+++|+++++++|+++|+|..+||++|    +++.|||.+|.+++|++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~----~~~~NAfa~G~~~~~~~  117 (296)
T PRK02391         42 IVVIAGGFLLAQYFFSDKLALWSMGARIVSEDEYPELHAMVERLCALADLPKPRVAVAD----SDVPNAFATGRSPKNAV  117 (296)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHcCCEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEe----CCCCceEEecCCCCCcE
Confidence            344455555556666676665444  477899999999999999999999999999999    57899999999987765


Q ss_pred             -eeehhhhhhcC
Q 024000          263 -VLYDTLIQQVK  273 (274)
Q Consensus       263 -VL~DTLl~~~~  273 (274)
                       ++.|+|++.++
T Consensus       118 V~vt~gLl~~L~  129 (296)
T PRK02391        118 VCVTTGLMRRLD  129 (296)
T ss_pred             EEecHHHHhhCC
Confidence             56699998764

>PRK02870 heat shock protein HtpX; Provisional

Probab=99.07  E-value=3.5e-09  Score=99.42  Aligned_cols=61  Identities=18%  Similarity=0.389  Sum_probs=56.0

Q ss_pred             ccCccCCChhHHHHHHHHHHhcCCC-CCceEEEeCCCCCCCcceeeeCCCC-CceEeeehhhhhhcC
Q 024000          209 NKFTPLPEGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFFK-NKRIVLYDTLIQQVK  273 (274)
Q Consensus       209 nkf~PL~dg~L~~~I~~La~~~gf~-~~~v~v~d~S~rs~~sNAyf~G~g~-~kRIVL~DTLl~~~~  273 (274)
                      |+++|+++++|++.++++++++|+| ..+||++|++    +.|||.+|.++ +++|+++|+|++.++
T Consensus       107 ~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~----~~NAFA~G~~~~~~~Ivvt~GLL~~L~  169 (336)
T PRK02870        107 ENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAP----YMNAFASGYSEKSAMVAITTGLLEKLD  169 (336)
T ss_pred             CCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCC----CCceEEecCCCCCcEEEEehHHhhhCC
Confidence            7899999999999999999999999 7999999954    79999999995 799999999998764

>PRK03072 heat shock protein HtpX; Provisional

Probab=99.00  E-value=5.3e-09  Score=96.41  Aligned_cols=87  Identities=9%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcc--cCccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCC-
Q 024000          183 IYLWAFMFVLSLVMMTLYPVLIAPLFN--KFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKN-  259 (274)
Q Consensus       183 l~~w~~~~~~~~~~~~l~P~~i~PLFn--kf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~-  259 (274)
                      +++.++.+++.++..+..|-.+.-..+  +-+|.||++|++.++++|+++|+|..+||++|    +++.|||++|..+. 
T Consensus        34 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~----~~~~NAFa~G~~~~~  109 (288)
T PRK03072         34 GIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEVQAPAMYRIVRELSTAARQPMPRLYISP----TAAPNAFATGRNPRN  109 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCCCCCEEEec----CCCCceEEecCCCCC
Confidence            333444555555555555665554443  45788899999999999999999999999999    34799999996443 


Q ss_pred             ceEeeehhhhhhcC
Q 024000          260 KRIVLYDTLIQQVK  273 (274)
Q Consensus       260 kRIVL~DTLl~~~~  273 (274)
                      ..|+++|+|++.++
T Consensus       110 ~~v~vt~gLl~~l~  123 (288)
T PRK03072        110 AAVCCTEGILQILN  123 (288)
T ss_pred             cEEEecHHHHHhCC
Confidence            35889999998765

>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification

Probab=98.99  E-value=1.2e-10  Score=101.81  Aligned_cols=81  Identities=42%  Similarity=0.671  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccCccCCChhHHHHHHHHHHhc--CCCCCceEEEeCCCCCCCcceeeeCCCCCceEeeeh
Q 024000          189 MFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSL--KFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLYD  266 (274)
Q Consensus       189 ~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~~I~~La~~~--gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRIVL~D  266 (274)
                      .++++.++..++|.+++|++++++|.++++|++.++++++++  |.|..+||++|++.    .|||.+|.|+.|+|+++|
T Consensus         3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~----~NA~~~g~~~~~~I~v~~   78 (226)
T PF01435_consen    3 MLVVSLLLAFIGPPLIAPLFNKFTPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPS----PNAFATGGGPRKRIVVTS   78 (226)
T ss_dssp             --TTTSTTGHHCCCCHCCHCTC--B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SS----EEEEEETTTC--EEEEEH
T ss_pred             eeeHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCC----CcEEEEccCCCcEEEEeC
Confidence            445566778889999999999999999999999999999999  99999999999665    999999999999999999


Q ss_pred             hhhhhcC
Q 024000          267 TLIQQVK  273 (274)
Q Consensus       267 TLl~~~~  273 (274)
                      .|++.++
T Consensus        79 ~ll~~~~   85 (226)
T PF01435_consen   79 GLLESLS   85 (226)
T ss_dssp             HHHHHSS
T ss_pred             hhhhccc
Confidence            9997653

; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.

>PRK05457 heat shock protein HtpX; Provisional

Probab=98.87  E-value=4.2e-08  Score=90.28  Aligned_cols=77  Identities=22%  Similarity=0.247  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhhhhcccCc----cCCChh--HHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCceEeee
Q 024000          192 LSLVMMTLYPVLIAPLFNKFT----PLPEGE--LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRIVLY  265 (274)
Q Consensus       192 ~~~~~~~l~P~~i~PLFnkf~----PL~dg~--L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRIVL~  265 (274)
                      ..++..+..|.++.-.. +-+    |.+++|  |++.++++|+++|+|..+||++|    +.+.|||++|.+++|++|..
T Consensus        47 ~~~~~~~~~~~i~~~~~-~a~~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~----~~~~NAfa~G~~~~~~~V~v  121 (284)
T PRK05457         47 GSFISLLMSKWMAKRST-GAEVIEQPRNETERWLVETVARQARQAGIGMPEVAIYH----SPEINAFATGASKNNSLVAV  121 (284)
T ss_pred             HHHHHHHHHHHHHHHhc-CCeECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEe----CCCceEEEecCCCCCeEEEe
Confidence            33444555555544332 333    444444  99999999999999999999999    46899999999999998888


Q ss_pred             hh-hhhhcC
Q 024000          266 DT-LIQQVK  273 (274)
Q Consensus       266 DT-Ll~~~~  273 (274)
                      || |+++++
T Consensus       122 t~gLl~~L~  130 (284)
T PRK05457        122 STGLLQNMS  130 (284)
T ss_pred             ehHHhhhCC
Confidence            88 887664

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.015  Score=53.09  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             ChhHHHHHHHHHHhcCCC-CCceEEEeCCCCCCCcceeeeCCC-CCceEeeehhhhhhcC
Q 024000          216 EGELREKIEKLASSLKFP-LKKLFVVDGSTRSSHSNAYMYGFF-KNKRIVLYDTLIQQVK  273 (274)
Q Consensus       216 dg~L~~~I~~La~~~gf~-~~~v~v~d~S~rs~~sNAyf~G~g-~~kRIVL~DTLl~~~~  273 (274)
                      +..+..++++++++.|.| .-++++.|    +...|||-+|-+ +++|||++|+|+++++
T Consensus        98 ~~~~~~~v~~~a~~~~~~~~~~v~i~~----~~~~NAFa~g~~~~~~~V~vt~gLl~~l~  153 (302)
T COG0501          98 YAVLLLKVAELARQAGIPHMPEVYILE----TPQPNAFALGGGPKNGRVVVTTGLLDLLN  153 (302)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCeeEEec----CCCccceecCCCCCCeeEEecHHHHhhCC
Confidence            345666999999999999 89999999    788999999998 6899999999999764

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=83.39  E-value=1.8  Score=39.76  Aligned_cols=49  Identities=20%  Similarity=0.322  Sum_probs=36.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccC-----CChhHHHHHHHHHH
Q 024000          178 GPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPL-----PEGELREKIEKLAS  228 (274)
Q Consensus       178 g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL-----~dg~L~~~I~~La~  228 (274)
                      -+.||+|++.+.++|+++..+.||..  |.++..|+=     +.+|+.+++.+..+
T Consensus        26 ~P~ww~~~f~~~i~~~~~y~~~yp~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~   79 (285)
T TIGR00782        26 LPRWWLWTFYATIVWGFGYLVAYPAW--PLVSGATKGLLGWSSRSQVEEEIKKFNE   79 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhccc--CCccccCCCccCcCHHHHHHHHHHHHHH
Confidence            46899999999999999999999977  777555441     34566666655543

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2ypt_A	482	Crystal Structure Of The Human Nuclear Membrane Zin		8e-63
4aw6_A	482	Crystal Structure Of The Human Nuclear Membrane Zin		8e-63
4il3_A	461	Crystal Structure Of S. Mikatae Ste24p Length = 461		2e-47

>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc Metalloprotease Zmpste24 Mutant (E336a) In Complex With A Synthetic Csim Tetrapeptide From The C-Terminus Of Prelamin A Length = 482

Iteration: 1
 Score =  236 bits (603), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 171/265 (64%), Gaps = 1/265 (0%)
Query: 8   AVVGFMILMYFFETYLDLRQHXXXXXXXXXX-TLEGVISQEKFEKSRGYSLDKSHFHFVH 66
           AV+ F   +Y +ET+L  RQ             L  ++  E FEKSR Y LDKS F F  
Sbjct: 22  AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81
Query: 67  EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
              +    + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S L  LP+
Sbjct: 82  GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPW 141
Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
           SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201
Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
            F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261
Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
           SHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc Metalloprotease Zmpste24 (Face1) Length = 482

Iteration: 1
 Score =  236 bits (603), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 127/265 (47%), Positives = 171/265 (64%), Gaps = 1/265 (0%)
Query: 8   AVVGFMILMYFFETYLDLRQHXXXXXXXXXX-TLEGVISQEKFEKSRGYSLDKSHFHFVH 66
           AV+ F   +Y +ET+L  RQ             L  ++  E FEKSR Y LDKS F F  
Sbjct: 22  AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81
Query: 67  EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
              +    + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S L  LP+
Sbjct: 82  GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPW 141
Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
           SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201
Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
            F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261
Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQ 271
           SHSNAY YGFFKNKRIVL+DTL+++
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEE 286

>pdb|4IL3|A Chain A, Crystal Structure Of S. Mikatae Ste24p Length = 461

Iteration: 1
 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/272 (39%), Positives = 148/272 (54%), Gaps = 4/272 (1%)
Query: 4   PYMEAVVGFMILMYFFETYLDLRQHXXXXXXXXXXTLEGVISQEKFEKSRGYSLDKSHFH 63
           P+   +  F I  + FE+YL  RQ+           LE  I  E F KSR YS  K+ F 
Sbjct: 14  PWKLIISAFSIAQFSFESYLTYRQYQKLSETKLPPVLEDEIDDETFHKSRNYSRAKAKFS 73
Query: 64  FVHEFVTILMDSAILLFRILPWFWKKS---GNFLVLVGLDAENEILHTLSFLAGVMLWSQ 120
              +   +      + +   P  W  +    N ++ V     + +  +L FL  +   S 
Sbjct: 74  IFSDIYNLAQKLVFIKYDFFPKIWHMAVTLSNAVLPVRFHMVSTVAQSLCFLGLLSSMST 133
Query: 121 LTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPY 180
           L DLP S YS FV+E + GFNK T+ L+  DMIK + LA  +G PI+   + I  K    
Sbjct: 134 LVDLPLSYYSHFVLEEKFGFNKLTVKLWITDMIKSLTLAYAIGGPILYLFLKIFDKFPTD 193
Query: 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVV 240
              Y+  F+FV+ ++ MT+ PV I PLFNKFTPL +GEL++ IE LA  + FPL K+FV+
Sbjct: 194 FLWYIMVFLFVVQILAMTIIPVFIMPLFNKFTPLEDGELKKSIESLADRVGFPLDKIFVI 253
Query: 241 DGSTRSSHSNAYMYGF-FKNKRIVLYDTLIQQ 271
           DGS RSSHSNAY  G  F +KRIVL+DTL+  
Sbjct: 254 DGSKRSSHSNAYFTGLPFTSKRIVLFDTLVNS 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	1e-60

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482

 Score =  198 bits (504), Expect = 1e-60
 Identities = 129/268 (48%), Positives = 175/268 (65%), Gaps = 1/268 (0%)

Query: 8   AVVGFMILMYFFETYLDLRQHAALKLP-KLPKTLEGVISQEKFEKSRGYSLDKSHFHFVH 66
           AV+ F   +Y +ET+L  RQ    K    +P  L  ++  E FEKSR Y LDKS F F  
Sbjct: 22  AVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWS 81

Query: 67  EFVTILMDSAILLFRILPWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPF 126
              +    + ILLF  +P+ W+ SG F    G   E EI  +L FL    L+S L  LP+
Sbjct: 82  GLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPW 141

Query: 127 SLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLGPPIVSAIIIIVQKGGPYLAIYLW 186
           SLY+TFVIE +HGFN+QT+  F +D IK  ++   +  P+ S ++ I++ GG Y  IY W
Sbjct: 142 SLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAW 201

Query: 187 AFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRS 246
            F  V+SLV++T+Y   IAPLF+KFTPLPEG+L+E+IE +A S+ FPL K++VV+GS RS
Sbjct: 202 LFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRS 261

Query: 247 SHSNAYMYGFFKNKRIVLYDTLIQQVKM 274
           SHSNAY YGFFKNKRIVL+DTL+++  +
Sbjct: 262 SHSNAYFYGFFKNKRIVLFDTLLEEYSV 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
4aw6_A	482	CAAX prenyl protease 1 homolog; hydrolase, M48 pep	100.0
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	98.47
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	98.17

>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A

Probab=100.00  E-value=1.5e-72  Score=545.92  Aligned_cols=267  Identities=48%  Similarity=0.842  Sum_probs=251.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhcccCCHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHhchH
Q 024000            5 YMEAVVGFMILMYFFETYLDLRQHAALKLP-KLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRIL   83 (274)
Q Consensus         5 ~~~~~~~~~~~~~l~e~yL~~rq~~~~~~~-~vP~~l~~~~~~e~~~ka~~Y~~~k~~~~~~~~~~~~~~~~~~l~~g~~   83 (274)
                      ..+++++++++.++||.||++||+|+++++ ++|+++++++|+|+|+||++|+++|.+|++++++++.+..++++++|++
T Consensus        19 ~~~~il~~~~~~~~~e~yL~~RQ~~~~~~~~~vP~~l~~~~~~e~f~ka~~Y~~~k~~f~~~~~~~~~i~~~~~l~~g~~   98 (482)
T 4aw6_A           19 IFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGI   98 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            467899999999999999999999999765 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhcccchhhhhhheeeccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024000           84 PWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLG  163 (274)
Q Consensus        84 ~~lw~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~li~LPf~~Y~~f~le~kyGfn~~t~~~f~~D~~k~~~l~~vl~  163 (274)
                      |++|++++++..+.+.++.++++++++|++++++++++++|||++|++|++|+||||||||++.|++|++|+.+++++++
T Consensus        99 ~~lw~~~~~~~~~~~~~~~~~i~~s~~f~~~~~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~  178 (482)
T 4aw6_A           99 PYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCIL  178 (482)
T ss_dssp             HHHHHHTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999887776665433357899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000          164 PPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGS  243 (274)
Q Consensus       164 ~~l~~~~~~i~~~~g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S  243 (274)
                      +|++++++++++++|++||+|+|++.++++++++++||.+|+||||||+|+|||||+++|+++|+++|||+.+|||+|+|
T Consensus       179 ~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iyP~~I~PLfnk~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gS  258 (482)
T 4aw6_A          179 LPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGS  258 (482)
T ss_dssp             HHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcceeeeCCCCCceEeeehhhhhh
Q 024000          244 TRSSHSNAYMYGFFKNKRIVLYDTLIQQ  271 (274)
Q Consensus       244 ~rs~~sNAyf~G~g~~kRIVL~DTLl~~  271 (274)
                      |||+|+|||++|+|++||||++|||+++
T Consensus       259 kRs~~~NAy~~G~~~~krIVl~dtLl~~  286 (482)
T 4aw6_A          259 KRSSHSNAYFYGFFKNKRIVLFDTLLEE  286 (482)
T ss_dssp             GTBSCCCEEEEESSSCEEEEEEHHHHC-
T ss_pred             CCCCCCceEEEcCCCCcEEEEEchHHHh
Confidence            9999999999999999999999999987

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=98.47  E-value=1.6e-07  Score=83.62  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=56.4

Q ss_pred             HHhhhhcccCccCCChhHHHHHHHHHHhcCCCCC------ceEEEeCCCCCCCcceeeeCCCCCceEeeehhhhhhc
Q 024000          202 VLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK------KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQV  272 (274)
Q Consensus       202 ~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~------~v~v~d~S~rs~~sNAyf~G~g~~kRIVL~DTLl~~~  272 (274)
                      ....+++++++|++|++++++|++++++.+.+.+      ++||+|.    ...|||.+|-   ++||++|+|++.+
T Consensus        25 ~~~~~~~~~~~~~~d~~l~~~l~~l~~~l~~~~~~~~~~~~v~v~~~----~~~NAfa~~g---g~I~v~~gLl~~l   94 (253)
T 3c37_A           25 KFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAVEFDYVFKVVKD----DSVNAFAIPG---GRVYVHTGLLKAA   94 (253)
T ss_dssp             HHHHHHHTTCCBCCCHHHHHHHHHHHHHHHHTSSCCCSCCEEEEECC----CSCCEEEETT---TEEEEEHHHHHHC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeC----CCCCeeEcCC---CeEEeeHHHHhhC
Confidence            4557899999999999999999999999888776      8999994    4699999983   4999999999876

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.17  E-value=2.5e-06  Score=66.21  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=46.8

Q ss_pred             ccCccCCC------hhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCceE-eeehhhhhhcC
Q 024000          209 NKFTPLPE------GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRI-VLYDTLIQQVK  273 (274)
Q Consensus       209 nkf~PL~d------g~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRI-VL~DTLl~~~~  273 (274)
                      ++-+|++|      ++|++.++++++++|+|..++|++|.    ...|||.+|.++.+++ ++.+-|++.++
T Consensus        12 ~g~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~v~v~~~----~~~NAf~~g~~~~~~~i~v~~gLl~~l~   79 (107)
T 3cqb_A           12 VGGMVIESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDS----ADINAFATGAKRDDSLVAVSTGLLHNMT   79 (107)
T ss_dssp             CTTEECSSCSSHHHHHHHHHHHHHHHHHTCCCCEEEEECC----SSEEEEEECCC--CCEEEEEHHHHHHSC
T ss_pred             cCCccCCCccchhHHHHHHHHHHHHHHcCCCCCeEEEEEC----CCcCEEEEecCCCCCEEEEcHHHHhhCC
Confidence            44566654      46999999999999999999999994    5789999999986665 55554887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00