Citrus Sinensis ID: 024009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS
Secondary Structure (PSIPRED)
ccccccccEEEEEEEccEEEEEcccccccccccccEEEEEEcccccccccccccccccccEEEEEccEEEEEcccccccccccEEEEcccEEEcccccccEEEccccccccccEEEEEEccEEEEEcccccccccccccccEEccccccEEEEcEEEEcccccEEEcccccccccccEEEEEEEccEEEEEcccccccccccccEEccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEcccccccccccccEEcccccEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccEEEEEEccccccccccccEEEEEccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEccEEEEEEccccccccccccccEEccccEEEEcccEEEccccccccccccccccccccEEEEEEEccEEEEEEcEccccccccEEEEEEEEEEEcccccccEEcccccccccccEEEEEccEEEEEccccccccccccccEEEccEEEEcccccc
Coil and Loop (DISEMBL)
mpremahshlgmvTDGRYIYVVtgqygpqcrgptahtfvldtetkkwqdlpplpvpryapatqlWRGRLhvmggsgenrytpevdhwslavkdgkplekewrteipiprggphracvvvddrllviggqegdfmakpgspifkcsrrnevvyddvymlddemkwkvlpsmpkpdshiEFAWVLVNNSIVIVggttekhpttkKMVLVGEIFQFNLNTLKwhvigklpyrvKTTLAGYWNgwlyftsgqrdkgpddpaprkvhgdmwrtkLLLNS
Flexible Loop (DISEMBL)
MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTEtkkwqdlpplpvPRYAPATQLWRGRLHVMGGSGENrytpevdhwslavkdgkplekewrteipiprggphraCVVVDDRLLVIGGQEgdfmakpgspifkcsrrneVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFtsgqrdkgpddpaprkvhgdmwrtklllns
Low Complexity Region (SEG)
MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS
Disordered region (IsUnstruct)
*********LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFT*****************************
Disordered Region (DISOPRED)
MPRE*AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLL**
Disordered Region (DISEMBL)
********HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS
Disordered Region (DISPRO)
**REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9LK31	426	Kelch repeat-containing p	no	no	0.978	0.629	0.739	1e-121
Q25386	916	Beta-scruin OS=Limulus po	N/A	no	0.609	0.182	0.235	1e-06
P32206	500	Protein C13 OS=Swinepox v	yes	no	0.408	0.224	0.291	2e-06
O35709	589	Ectoderm-neural cortex pr	yes	no	0.795	0.370	0.241	7e-06
A2AUC9	606	Kelch repeat and BTB doma	no	no	0.791	0.358	0.239	1e-05
O14682	589	Ectoderm-neural cortex pr	yes	no	0.795	0.370	0.241	2e-05
Q9ER30	606	Kelch repeat and BTB doma	no	no	0.791	0.358	0.235	3e-05
Q5XIA9	354	Kelch domain-containing p	no	no	0.693	0.536	0.256	3e-05
Q5ZKD9	610	Kelch-like protein 20 OS=	no	no	0.704	0.316	0.241	4e-05
Q6DFF6	604	Kelch-like protein 20 OS=	N/A	no	0.704	0.319	0.241	4e-05

>sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1

 Score =  433 bits (1113), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 199/269 (73%), Positives = 234/269 (86%), Gaps = 1/269 (0%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
           P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGPT+ +FVLD+ TK W + P LP PRYAPA
Sbjct: 157 PKEMANSHLGIVTDGRYVYVVSGQLGPQCRGPTSRSFVLDSFTKTWLEFPSLPAPRYAPA 216

Query: 62  TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
           TQ+WRGRLHVMGGS ENR     DHWS+AVKDGK L+ EWR E+PIPRGGPHRACVV +D
Sbjct: 217 TQIWRGRLHVMGGSKENRNAVAFDHWSIAVKDGKALD-EWREEVPIPRGGPHRACVVAND 275

Query: 122 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 181
           +LLVIGGQEGDFMAKP SPIFKCSRR E+   +VYM+D+EMKWK+LP MPK +SHIE AW
Sbjct: 276 KLLVIGGQEGDFMAKPNSPIFKCSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAW 335

Query: 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGW 241
           ++VNNSIVIVGGTT+ HP TK++VLVGEIF+F L+TL W VIG+LPYRVKT +AG+WNG+
Sbjct: 336 IIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWNGY 395

Query: 242 LYFTSGQRDKGPDDPAPRKVHGDMWRTKL 270
           LYFTSGQRD+GPD+P P KV G+MWRTKL
Sbjct: 396 LYFTSGQRDRGPDNPQPGKVIGEMWRTKL 424

Arabidopsis thaliana (taxid: 3702)

>sp|Q25386|SCRB_LIMPO Beta-scruin OS=Limulus polyphemus PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 34  TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDH 86
           +A  F+   +   W     +  PR   A   + G++++ GG        G+ + T     
Sbjct: 100 SASMFLYHLDRNNWNFYGTMLEPRNYHAAAYFHGKVYLFGGYNPLHCIKGKMQATSTTFQ 159

Query: 87  WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR 146
            +L VK       +WR    +P    H    ++D+R+ V GG++                
Sbjct: 160 LTLDVK-------QWRRRADMPSARAHHGVTIMDERIFVFGGKDS--------------- 197

Query: 147 RNEVVYDDVYMLDDEM-KWKVLPSMPKPDSHIEFAWVLVNNS--IVIVGGTTEKHPTTKK 203
            N  +   V M + E+ +W  L S+P+P         + NN   I +VGG T K    ++
Sbjct: 198 -NGNIIASVEMYEPELDQWTSLASIPEP----LMGSAVTNNEGLIYVVGGLTTKKEKNQE 252

Query: 204 MVLVGEIFQFNLNTLKWHVIGKLP 227
            VL  +I+ F+    KW+    LP
Sbjct: 253 GVLSNKIYCFDPLNNKWYRKPPLP 276

May have an enzymatic role. Found the acrosomal vesicle at the anterior of sperm but not in the acrosomal process.

Limulus polyphemus (taxid: 6850)

>sp|P32206|VC13_SWPVK Protein C13 OS=Swinepox virus (strain Kasza) GN=C13L PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 9   HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGR 68
           + G V     +Y++ G    +   P +    +DT +      PPL  PR  P   +++ R
Sbjct: 292 YCGSVLMNDILYLIGGI--NKSLDPVSDITSVDTRSFIELHTPPLLHPRKCPGVAIFKNR 349

Query: 69  LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI--PRGGPHRACVV-VDDRLLV 125
           ++V+GG G +     V+ WS       P E++WR E+P+  PR  P   C++  D+ L V
Sbjct: 350 IYVVGGIGYDGPLKTVESWS-------PGEQQWREEVPLLQPRFNP---CIIGTDNDLYV 399

Query: 126 IGGQEGD 132
           +GG   D
Sbjct: 400 VGGISED 406

Sus scrofa (taxid: 9823)

>sp|O35709|ENC1_MOUSE Ectoderm-neural cortex protein 1 OS=Mus musculus GN=Enc1 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 35/253 (13%)

Query: 22  VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-SGENRY 80
           +TG  G +  G +   +V DT  ++W    P+ V R+   +   +  L+V+GG +     
Sbjct: 344 ITGGRGSE-NGVSKDVWVYDTLHEEWSKAAPMLVARFGHGSAELKHCLYVVGGHTAATGC 402

Query: 81  TPEVDHWSL-AVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGS 139
            P     SL  V+   P   +W    P+  G  + A V    +L   GG     ++    
Sbjct: 403 LPASPSVSLKQVEQYDPTTNKWTMVAPLREGVSNAAVVSAKLKLFAFGGTS---VSHDKL 459

Query: 140 PIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHP 199
           P  +C       YD       E +W V  + P+P  +   A  ++ N I I+GG TE   
Sbjct: 460 PKVQC-------YDQC-----ENRWSVPATCPQPWRYT--AAAVLGNQIFIMGGDTEFSA 505

Query: 200 TTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSG----QRDKGPDD 255
            +         ++FN  T +W  +G +  +  +  A      LY   G    QR K  D 
Sbjct: 506 CSA--------YKFNSETYQWTKVGDVTAKRMSCHAVASGNKLYVVGGYFGIQRCKTLDC 557

Query: 256 PAPRKVHGDMWRT 268
             P     D+W +
Sbjct: 558 YDPTL---DVWNS 567

Actin-binding protein involved in the regulation of neuronal process formation and in differentiation of neural crest cells. Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|A2AUC9|KBTBA_MOUSE Kelch repeat and BTB domain-containing protein 10 OS=Mus musculus GN=Kbtbd10 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 94/251 (37%), Gaps = 34/251 (13%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT---AHTFVLDTETKKWQDLPPLPVPR 57
           +  ++  +H  +VT    +YVV G Y  +        ++ F LD  T +W  LPPLP  R
Sbjct: 329 LAEQIPRNHSSLVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVTSEWVGLPPLPSAR 388

Query: 58  YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
                     +++V+ G        E    S+   D  P+  +W     +P        +
Sbjct: 389 CLFGLGEVDDKIYVVAGKD---LQTEASLDSVLCYD--PVAAKWSEVKNLPIKVYGHNVI 443

Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 176
             +  +  +GG+  D          KC+ R       V++ +  +  WK L  M  P S 
Sbjct: 444 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 487

Query: 177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG 236
             F   +    IVI GG TE         L   +  F+L T KW V+ + P    +    
Sbjct: 488 --FGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMTEFPQERSSISLV 538

Query: 237 YWNGWLYFTSG 247
              G LY   G
Sbjct: 539 SLAGALYAIGG 549

Required for pseudopod elongation in transformed cells. Substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|O14682|ENC1_HUMAN Ectoderm-neural cortex protein 1 OS=Homo sapiens GN=ENC1 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 35/253 (13%)

Query: 22  VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-SGENRY 80
           +TG  G +  G +   +V DT  ++W    P+ V R+   +   +  L+V+GG +     
Sbjct: 344 ITGGRGSE-NGVSKDVWVYDTLHEEWSKAAPMLVARFGHGSAELKHCLYVVGGHTAATGC 402

Query: 81  TPEVDHWSL-AVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGS 139
            P     SL  V+   P   +W    P+  G  + A V    +L   GG     ++    
Sbjct: 403 LPASPSVSLKQVEHYDPTINKWTMVAPLREGVSNAAVVSAKLKLFAFGGTS---VSHDKL 459

Query: 140 PIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHP 199
           P  +C       YD       E +W V  + P+P  +   A  ++ N I I+GG TE   
Sbjct: 460 PKVQC-------YDQC-----ENRWTVPATCPQPWRYT--AAAVLGNQIFIMGGDTEFSA 505

Query: 200 TTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSG----QRDKGPDD 255
            +         ++FN  T +W  +G +  +  +  A      LY   G    QR K  D 
Sbjct: 506 CSA--------YKFNSETYQWTKVGDVTAKRMSCHAVASGNKLYVVGGYFGIQRCKTLDC 557

Query: 256 PAPRKVHGDMWRT 268
             P     D+W +
Sbjct: 558 YDPTL---DVWNS 567

Actin-binding protein involved in the regulation of neuronal process formation and in differentiation of neural crest cells. May be down-regulated in neuroblastoma tumors. Substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q9ER30|KBTBA_RAT Kelch repeat and BTB domain-containing protein 10 OS=Rattus norvegicus GN=Kbtbd10 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 34/251 (13%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT---AHTFVLDTETKKWQDLPPLPVPR 57
           +  ++  +H  +VT    +YVV G Y  +        ++ F LD  + +W  LPPLP  R
Sbjct: 329 LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 388

Query: 58  YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
                     +++V+ G        E    S+   D  P+  +W     +P        +
Sbjct: 389 CLFGLGEVDDKIYVVAGKD---LQTEASLDSVLCYD--PVAAKWSEVKNLPIKVYGHNVI 443

Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 176
             +  +  +GG+  D          KC+ R       V++ +  +  WK L  M  P S 
Sbjct: 444 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 487

Query: 177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG 236
             F   +    IVI GG TE         L   +  F+L T KW V+ + P    +    
Sbjct: 488 --FGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMTEFPQERSSISLV 538

Query: 237 YWNGWLYFTSG 247
              G LY   G
Sbjct: 539 SLAGSLYAIGG 549

Required for pseudopod elongation in transformed cells. Substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q5XIA9|KLD8B_RAT Kelch domain-containing protein 8B OS=Rattus norvegicus GN=Klhdc8b PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 81/222 (36%), Gaps = 32/222 (14%)

Query: 34  TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 93
           TA T  LD  +  W  L PLP  R   A  +   ++ V+GG        EV     AV+ 
Sbjct: 48  TAET--LDMASHTWLALAPLPTARAGAAAVVLGKQVLVVGG------VDEVQSPVAAVEA 99

Query: 94  GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 153
               E  W     +P+     A V  D  +  +GG   D   +    +++ SRR+     
Sbjct: 100 FLADEGRWERRATLPQAAMGVATVERDGMVYALGGMGPDTAPQAQVLVYE-SRRD----- 153

Query: 154 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 213
                    +W  LPSMP P      +  L  N I ++GG   K P T           F
Sbjct: 154 ---------RWLSLPSMPTP--CYGASTFLHGNKIYVLGGRQGKLPVTA-------FEAF 195

Query: 214 NLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDD 255
           +L T  W     LP R          G ++   G +  GP +
Sbjct: 196 DLETRTWTRHPSLPSRRAFAGCAMAEGSVFSLGGLQQPGPHN 237

Rattus norvegicus (taxid: 10116)

>sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 35/228 (15%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 399 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 455

Query: 62  TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 456 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 508

Query: 122 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 181
            +  +GG+  D   +  S      R N+              W  + +M    S +  A 
Sbjct: 509 MIYAVGGR--DDTTELSSAERYNPRTNQ--------------WSPVVAMTSRRSGVGLA- 551

Query: 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR 229
            +VN  ++ VGG      T  K +   E+F  + NT  W + G + YR
Sbjct: 552 -VVNGQLMAVGGF--DGTTYLKTI---EVFDPDANT--WRLYGGMNYR 591

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Gallus gallus (taxid: 9031)

>sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 35/228 (15%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 393 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query: 62  TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query: 122 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 181
            +  +GG+  D   +  S      R N+              W  + +M    S +  A 
Sbjct: 503 MIYAVGGR--DDTTELSSAERYNPRTNQ--------------WSPVVAMTSRRSGVGLA- 545

Query: 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR 229
            +VN  ++ VGG      T  K +   E+F  + NT  W + G + YR
Sbjct: 546 -VVNGQLMAVGGF--DGTTYLKTI---EVFDPDANT--WRLYGGMNYR 585

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255561818	425	conserved hypothetical protein [Ricinus	1.0	0.644	0.890	1e-145
225443351	426	PREDICTED: kelch repeat-containing prote	0.992	0.638	0.886	1e-144
12325370	1036	unknown protein; 27363-23366 [Arabidopsi	0.996	0.263	0.864	1e-143
224113255	424	predicted protein [Populus trichocarpa]	1.0	0.646	0.875	1e-143
224097430	424	predicted protein [Populus trichocarpa]	1.0	0.646	0.875	1e-143
145336621	415	kelch-like motif-containing protein [Ara	0.996	0.657	0.864	1e-141
356526296	410	PREDICTED: kelch repeat-containing prote	0.996	0.665	0.871	1e-141
297830804	409	hypothetical protein ARALYDRAFT_318850 [	0.996	0.667	0.864	1e-141
296090252	431	unnamed protein product [Vitis vinifera]	0.901	0.573	0.845	1e-140
225452169	423	PREDICTED: kelch repeat-containing prote	0.894	0.579	0.848	1e-139

>gi|255561818|ref|XP_002521918.1| conserved hypothetical protein [Ricinus communis] gi|223538843|gb|EEF40442.1| conserved hypothetical protein [Ricinus communis]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/274 (89%), Positives = 262/274 (95%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIYVV+GQYGPQCRGPTAHTFVLDTETK+WQD+PPLPVPRYAP
Sbjct: 152 MPKEMAHSHLGMVTDGRYIYVVSGQYGPQCRGPTAHTFVLDTETKQWQDMPPLPVPRYAP 211

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWRTEIPIPRGGPHRACVVV+
Sbjct: 212 ATQLWRGRLHVMGGSKENRHTPGLEHWSLAVKDGKALEKEWRTEIPIPRGGPHRACVVVN 271

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           D+L+VIGGQEGDFMAKPGSPIFKCSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFA
Sbjct: 272 DQLIVIGGQEGDFMAKPGSPIFKCSRRNEVVYGDVYMLDDDMKWKVLPSMPKPDSHIEFA 331

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           WVLVNNSIVIVGGTT+KHP TKKM+L GE+FQFNL+  KW VIGKLPYRVKTTL G+WNG
Sbjct: 332 WVLVNNSIVIVGGTTDKHPVTKKMILNGEVFQFNLDNTKWSVIGKLPYRVKTTLVGFWNG 391

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS 274
           WLYFTSGQRD+GPDDPAPRKV G+MWRTKL LNS
Sbjct: 392 WLYFTSGQRDRGPDDPAPRKVLGEMWRTKLKLNS 425

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443351|ref|XP_002265018.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera] gi|297735771|emb|CBI18458.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/272 (88%), Positives = 261/272 (95%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA TFVLDT+TK+W D+PPLPVPRYAP
Sbjct: 155 MPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARTFVLDTKTKQWSDMPPLPVPRYAP 214

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGSGENR+TP ++HWSLAVK+GK LEKEWR+EIPIPRGGPHRAC+VVD
Sbjct: 215 ATQLWRGRLHVMGGSGENRHTPALEHWSLAVKNGKALEKEWRSEIPIPRGGPHRACIVVD 274

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV+ DVYMLDDEMKWK LP MPKPDSHIEFA
Sbjct: 275 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVFSDVYMLDDEMKWKNLPPMPKPDSHIEFA 334

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           WV+VN+SI+IVGGTTEKHP TKKMVLVGE+FQFNL++LKW VIGKLPYRVKTTLAG+WNG
Sbjct: 335 WVMVNHSIIIVGGTTEKHPITKKMVLVGEVFQFNLDSLKWSVIGKLPYRVKTTLAGFWNG 394

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLL 272
           WLYFTSGQRDKGPDDPAP+KV G+MWRTKL L
Sbjct: 395 WLYFTSGQRDKGPDDPAPKKVLGEMWRTKLSL 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12325370|gb|AAG52629.1|AC024261_16 unknown protein; 27363-23366 [Arabidopsis thaliana]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/273 (86%), Positives = 255/273 (93%)

Query: 1    MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
            MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVLDT+T  W+D  PLPVPRYAP
Sbjct: 763  MPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVLDTDTNTWKDFVPLPVPRYAP 822

Query: 61   ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
            ATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE EWR+EIPIPRGGPHRACVVVD
Sbjct: 823  ATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENEWRSEIPIPRGGPHRACVVVD 882

Query: 121  DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
            DRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+EMKWKV+P MPKPDSHIEFA
Sbjct: 883  DRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEEMKWKVMPPMPKPDSHIEFA 942

Query: 181  WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
            W +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTLKW+VIGKLPYRVKTTLAGYW+G
Sbjct: 943  WKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTLKWYVIGKLPYRVKTTLAGYWDG 1002

Query: 241  WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273
             LYFTSGQRDKGPDDPAPRKV  +MWRTKL+LN
Sbjct: 1003 QLYFTSGQRDKGPDDPAPRKVMAEMWRTKLILN 1035

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113255|ref|XP_002316438.1| predicted protein [Populus trichocarpa] gi|222865478|gb|EEF02609.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/274 (87%), Positives = 257/274 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDT+TK+WQDLPPLPVPRYAP
Sbjct: 151 MPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTKTKQWQDLPPLPVPRYAP 210

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWR EIPIPRGGPHRACVVV 
Sbjct: 211 ATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWRPEIPIPRGGPHRACVVVS 270

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+V+MLDDEMKWK LP MPKPDSHIEFA
Sbjct: 271 DRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVHMLDDEMKWKPLPPMPKPDSHIEFA 330

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           W +VNNSIVI GGTTEKHPTTKKMVLVGE+F+FNL+TL W VIGKLPYRVKTTL G+WNG
Sbjct: 331 WAIVNNSIVIAGGTTEKHPTTKKMVLVGEVFRFNLDTLTWSVIGKLPYRVKTTLVGFWNG 390

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS 274
           WLYFTSGQRD+GPDDPAP+KV  DMWRTKL LNS
Sbjct: 391 WLYFTSGQRDRGPDDPAPKKVIADMWRTKLRLNS 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097430|ref|XP_002310931.1| predicted protein [Populus trichocarpa] gi|222850751|gb|EEE88298.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/274 (87%), Positives = 255/274 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDTET+KWQDLPPLPVPRYAP
Sbjct: 151 MPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTETRKWQDLPPLPVPRYAP 210

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWRTEIPIP GGPHRACVVV+
Sbjct: 211 ATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWRTEIPIPHGGPHRACVVVN 270

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+VYMLDDEMKWK L  MPK DSHIEFA
Sbjct: 271 DRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVYMLDDEMKWKPLSPMPKADSHIEFA 330

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           W +VNNSIVI GGTTEKHP TKKMVLVGE+FQFNL+TL W VIGKLPYRVKTTL G+WNG
Sbjct: 331 WAIVNNSIVIAGGTTEKHPITKKMVLVGEVFQFNLDTLAWSVIGKLPYRVKTTLVGFWNG 390

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLNS 274
           WLYFTSGQRD+GPDDPAP+KV  DMWRTKL LNS
Sbjct: 391 WLYFTSGQRDRGPDDPAPKKVIADMWRTKLKLNS 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336621|ref|NP_175565.2| kelch-like motif-containing protein [Arabidopsis thaliana] gi|28416695|gb|AAO42878.1| At1g51540 [Arabidopsis thaliana] gi|110743235|dbj|BAE99508.1| At1g51540 [Arabidopsis thaliana] gi|332194560|gb|AEE32681.1| kelch-like motif-containing protein [Arabidopsis thaliana]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/273 (86%), Positives = 255/273 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVLDT+T  W+D  PLPVPRYAP
Sbjct: 142 MPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVLDTDTNTWKDFVPLPVPRYAP 201

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE EWR+EIPIPRGGPHRACVVVD
Sbjct: 202 ATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENEWRSEIPIPRGGPHRACVVVD 261

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+EMKWKV+P MPKPDSHIEFA
Sbjct: 262 DRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEEMKWKVMPPMPKPDSHIEFA 321

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           W +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTLKW+VIGKLPYRVKTTLAGYW+G
Sbjct: 322 WKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTLKWYVIGKLPYRVKTTLAGYWDG 381

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273
            LYFTSGQRDKGPDDPAPRKV  +MWRTKL+LN
Sbjct: 382 QLYFTSGQRDKGPDDPAPRKVMAEMWRTKLILN 414

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526296|ref|XP_003531754.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/273 (87%), Positives = 254/273 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAH FVLDT+T+KW+DLPPLPVPRYAP
Sbjct: 137 MPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHNFVLDTQTRKWRDLPPLPVPRYAP 196

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LE EWR+EIPIPRGGPHRACVVVD
Sbjct: 197 ATQLWRGRLHVMGGSKENRHTPGLEHWSLAVKDGKALENEWRSEIPIPRGGPHRACVVVD 256

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRL V+GGQEGDFMAKPGSPIFKCSRR EVVY DVYMLDD+MKWK LP MPK +SHIEFA
Sbjct: 257 DRLYVLGGQEGDFMAKPGSPIFKCSRRQEVVYTDVYMLDDDMKWKTLPPMPKANSHIEFA 316

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           W LVNNSIVIVGGTTEKHP TKKMVL GE+ QFNLNTLKW VIGKLPYRVKTTL G+WNG
Sbjct: 317 WALVNNSIVIVGGTTEKHPITKKMVLNGEVVQFNLNTLKWSVIGKLPYRVKTTLVGFWNG 376

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273
           WLYFTSGQRDKGPDDP+P+KV G+MWRTKL LN
Sbjct: 377 WLYFTSGQRDKGPDDPSPKKVIGEMWRTKLKLN 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830804|ref|XP_002883284.1| hypothetical protein ARALYDRAFT_318850 [Arabidopsis lyrata subsp. lyrata] gi|297329124|gb|EFH59543.1| hypothetical protein ARALYDRAFT_318850 [Arabidopsis lyrata subsp. lyrata]

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/273 (86%), Positives = 253/273 (92%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGMVTDGRYIY+VTGQYGPQCRGPTA TFVLDT+T  W D  P PVPRYAP
Sbjct: 136 MPKEMAHSHLGMVTDGRYIYIVTGQYGPQCRGPTAKTFVLDTDTNSWSDFVPFPVPRYAP 195

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK +EKEWR+EIPIPRGGPHRACVVVD
Sbjct: 196 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKAMEKEWRSEIPIPRGGPHRACVVVD 255

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+EMKWKV+PSMPKPDSHIEFA
Sbjct: 256 DRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEEMKWKVMPSMPKPDSHIEFA 315

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           W +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNT+KW+VIGKLPYRVKTTL GYW G
Sbjct: 316 WKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTMKWYVIGKLPYRVKTTLVGYWEG 375

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273
            LYFTSGQRDKGPDDPAPRKV  +MWRTKL+LN
Sbjct: 376 QLYFTSGQRDKGPDDPAPRKVMAEMWRTKLILN 408

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090252|emb|CBI40071.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/272 (84%), Positives = 254/272 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA  FVLDTETKKWQDLP LP PRYAP
Sbjct: 152 MPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAP 211

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK LEKEWR+EIPIPRGGPHRACVVVD
Sbjct: 212 ATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVD 271

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVYMLDDEMKWKVLP MPKPDSHIEFA
Sbjct: 272 DRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVYMLDDEMKWKVLPPMPKPDSHIEFA 331

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           WV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L++LKW VIGK+P+R KTTLA +W+G
Sbjct: 332 WVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLDSLKWSVIGKMPFRAKTTLAAFWDG 391

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLL 272
           WLYFTSGQRD+GPD+P PRKV GDMWRTKL L
Sbjct: 392 WLYFTSGQRDRGPDNPQPRKVIGDMWRTKLFL 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452169|ref|XP_002270625.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 229/270 (84%), Positives = 253/270 (93%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           MP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA  FVLDTETKKWQDLP LP PRYAP
Sbjct: 152 MPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTARCFVLDTETKKWQDLPTLPAPRYAP 211

Query: 61  ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
           ATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK LEKEWR+EIPIPRGGPHRACVVVD
Sbjct: 212 ATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKALEKEWRSEIPIPRGGPHRACVVVD 271

Query: 121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
           DRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVYMLDDEMKWKVLP MPKPDSHIEFA
Sbjct: 272 DRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVYMLDDEMKWKVLPPMPKPDSHIEFA 331

Query: 181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
           WV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L++LKW VIGK+P+R KTTLA +W+G
Sbjct: 332 WVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLDSLKWSVIGKMPFRAKTTLAAFWDG 391

Query: 241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKL 270
           WLYFTSGQRD+GPD+P PRKV GDMWRTKL
Sbjct: 392 WLYFTSGQRDRGPDNPQPRKVIGDMWRTKL 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2033944	415	AT1G51540 [Arabidopsis thalian	0.996	0.657	0.864	3.7e-135
TAIR|locus:2086528	426	AT3G27220 "AT3G27220" [Arabido	0.978	0.629	0.739	1e-114
UNIPROTKB|G4N9D1	338	MGG_10013 "Uncharacterized pro	0.813	0.659	0.256	1.3e-07
MGI|MGI:3045305	634	Klhl31 "kelch-like 31" [Mus mu	0.525	0.227	0.331	7.5e-06
TAIR|locus:2177542	666	AT5G50310 [Arabidopsis thalian	0.620	0.255	0.231	8e-06
RGD|1359445	354	Klhdc8b "kelch domain containi	0.605	0.468	0.253	6.9e-05
RGD|1565441	717	Klhl4 "kelch-like family membe	0.401	0.153	0.314	0.00034
MGI|MGI:1925517	354	Klhdc8b "kelch domain containi	0.605	0.468	0.253	0.00044
UNIPROTKB|Q6DFF6	604	klhl20 "Kelch-like protein 20"	0.434	0.197	0.248	0.00045
UNIPROTKB|F1NMM8	609	KLHL20 "Kelch-like protein 20"	0.434	0.195	0.248	0.00046

TAIR|locus:2033944 AT1G51540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 236/273 (86%), Positives = 255/273 (93%)

Query:     1 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
             MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVLDT+T  W+D  PLPVPRYAP
Sbjct:   142 MPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVLDTDTNTWKDFVPLPVPRYAP 201

Query:    61 ATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVD 120
             ATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE EWR+EIPIPRGGPHRACVVVD
Sbjct:   202 ATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENEWRSEIPIPRGGPHRACVVVD 261

Query:   121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFA 180
             DRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+EMKWKV+P MPKPDSHIEFA
Sbjct:   262 DRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEEMKWKVMPPMPKPDSHIEFA 321

Query:   181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240
             W +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTLKW+VIGKLPYRVKTTLAGYW+G
Sbjct:   322 WKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTLKWYVIGKLPYRVKTTLAGYWDG 381

Query:   241 WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273
              LYFTSGQRDKGPDDPAPRKV  +MWRTKL+LN
Sbjct:   382 QLYFTSGQRDKGPDDPAPRKVMAEMWRTKLILN 414

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2086528 AT3G27220 "AT3G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 199/269 (73%), Positives = 234/269 (86%)

Query:     2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
             P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGPT+ +FVLD+ TK W + P LP PRYAPA
Sbjct:   157 PKEMANSHLGIVTDGRYVYVVSGQLGPQCRGPTSRSFVLDSFTKTWLEFPSLPAPRYAPA 216

Query:    62 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
             TQ+WRGRLHVMGGS ENR     DHWS+AVKDGK L+ EWR E+PIPRGGPHRACVV +D
Sbjct:   217 TQIWRGRLHVMGGSKENRNAVAFDHWSIAVKDGKALD-EWREEVPIPRGGPHRACVVAND 275

Query:   122 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 181
             +LLVIGGQEGDFMAKP SPIFKCSRR E+   +VYM+D+EMKWK+LP MPK +SHIE AW
Sbjct:   276 KLLVIGGQEGDFMAKPNSPIFKCSRRREIFNGEVYMMDEEMKWKMLPPMPKNNSHIESAW 335

Query:   182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGW 241
             ++VNNSIVIVGGTT+ HP TK++VLVGEIF+F L+TL W VIG+LPYRVKT +AG+WNG+
Sbjct:   336 IIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWNGY 395

Query:   242 LYFTSGQRDKGPDDPAPRKVHGDMWRTKL 270
             LYFTSGQRD+GPD+P P KV G+MWRTKL
Sbjct:   396 LYFTSGQRDRGPDNPQPGKVIGEMWRTKL 424

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|G4N9D1 MGG_10013 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 65/253 (25%), Positives = 103/253 (40%)

Query:     8 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV--PRYAPATQLW 65
             +H  M + G  ++V+    G     P A+++  D  T  W  LPP+P    R A A  +W
Sbjct:    95 NHANMASLGGKLFVLGAIAGQGVNYPIANSYAYDPATDAWSALPPMPAGTERGASAVGVW 154

Query:    66 RGRLHVMGGSGENRYTPEVDH---WSLAVKDGKPLEKEWRTEIP-IPRGG-PHRACVVVD 120
                + + GG     +         W+ ++ + + L+  W T  P +P GG  H   VV+ 
Sbjct:   155 GDNIVIAGGLNYTNFLNSAQTTVPWT-SMFNTRTLQ--WDTAFPDLPDGGRDHCGGVVLG 211

Query:   121 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS-MPKPDSHIEF 179
             +   V+GG+        G      + R  V+  D+     E  W  L   MP P   I  
Sbjct:   212 NTFYVVGGRVS------GEK----NVRGTVLAMDLSKAKRE--WVELKGKMPTPRGSIST 259

Query:   180 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN 239
             A  LVN  +   GG  E +P    +    E++    ++  W V+  +P     T A   +
Sbjct:   260 A--LVNGKVYTFGG--EGNPVGNGIFDNVEVYDVKSDS--WQVLPPMPRPRHGTAAAVVD 313

Query:   240 GWLYFTSGQRDKG 252
             G +Y   G  DKG
Sbjct:   314 GRIYIPGGA-DKG 325

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:3045305 Klhl31 "kelch-like 31" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 52/157 (33%), Positives = 63/157 (40%)

Query:     2 PREMAHS-HLGMVTDGRYIYVVTGQY--GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY 58
             P E+A   H   V DGR I  VTG Y      R   A+   LD     WQ+LP L  PR 
Sbjct:   451 PLEVARCCHASAVADGRVI--VTGGYIGSAYSRSVCAYDPALDA----WQELPQLSTPRG 504

Query:    59 APATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 118
                      RL+VMGGS        VD   L V+   P  ++W    P+P G        
Sbjct:   505 WHCAVALGDRLYVMGGSQLGPRGERVD--VLTVESFSPAARQWSFVAPLPVGVSTAGVSA 562

Query:   119 VDDRLLVIGG-QEGDFMAKPGSPIFKCSRRNEVVYDD 154
             +  R  ++GG  EGD   K     F     NE   DD
Sbjct:   563 LHGRAYLLGGWNEGDKKYKKCIQCFN-PELNEWTEDD 598

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2177542 AT5G50310 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 46/199 (23%), Positives = 90/199 (45%)

Query:    41 DTETKKWQ--DLPPLPVPRYAPATQLWRGRLHVMGGS----GENRYTPEVDHWSLAVKDG 94
             D E ++W+    P  P PR +     W+  L++ GG      + R+    D W L VK  
Sbjct:   107 DVEKQEWKLVSSPNSPPPRSSHQAVAWKNYLYIFGGEFTSPNQERFHHYKDFWMLDVKTN 166

Query:    95 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 154
             +  E+      P PR G HR  V+   ++++ GG             F  + R    Y+D
Sbjct:   167 Q-WEQLNLKGCPSPRSG-HRM-VLYKHKIIIFGG-------------FYDTLREVRYYND 210

Query:   155 VYMLD-DEMKWKVLPSMPK---PDSHIEFAWVLVNNSIVIVGGTTEK---HPTTKKMVLV 207
             +Y+ D D+ KW+ +   P    P +   F + +  + I + GG +++     +++K ++ 
Sbjct:   211 LYVFDLDQYKWQEIKPKPGAMWPTARSGFQFFVYQDEIFLYGGYSKEVSSEKSSEKGIVH 270

Query:   208 GEIFQFNLNTLKWHVIGKL 226
              +++  +  T +W+ + K+
Sbjct:   271 ADLWSLDPRTWEWNKVKKI 289

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006869 "lipid transport" evidence=RCA

RGD|1359445 Klhdc8b "kelch domain containing 8B" [Rattus norvegicus (taxid:10116)]

 Score = 121 (47.7 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 48/189 (25%), Positives = 78/189 (41%)

Query:    10 LGMVT---DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWR 66
             +G+ T   DG  +Y + G  GP    P A   V ++   +W  LP +P P Y  +T L  
Sbjct:   118 MGVATVERDGM-VYALGGM-GPDT-APQAQVLVYESRRDRWLSLPSMPTPCYGASTFLHG 174

Query:    67 GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVI 126
              +++V+GG          + + L  +        W     +P       C + +  +  +
Sbjct:   175 NKIYVLGGRQGKLPVTAFEAFDLETRT-------WTRHPSLPSRRAFAGCAMAEGSVFSL 227

Query:   127 GGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLP-SMPKPDSHIEFAWVLV 184
             GG     + +PG   F  SR + V  + V M D E   W  LP S+   D   +F    +
Sbjct:   228 GG-----LQQPGPHNFY-SRPHFV--NTVEMFDLEHGSWTKLPRSLRMRDKRADFVVGSL 279

Query:   185 NNSIVIVGG 193
               +IV +GG
Sbjct:   280 GGNIVAIGG 288

GO:0005737 "cytoplasm" evidence=IEA;ISO

RGD|1565441 Klhl4 "kelch-like family member 4" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00034, P = 0.00034
 Identities = 38/121 (31%), Positives = 54/121 (44%)

Query:     2 PREMAHSHLGMVTDGRYIYVVTGQYGP---QCRGPTAHTFVLDTETKKWQDLPPLPVPRY 58
             P       +G+ T   Y+YVV G   P    C   +      D ++  W  + PL VPR 
Sbjct:   601 PMSKRRGGVGVATHNGYLYVVGGHDAPAPNHCSRLSDCVERYDPKSDSWSTVAPLSVPRD 660

Query:    59 APATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 118
             A A      +L+V+GG   + Y   V+ +  A KD      EW+ E+P+  G    ACVV
Sbjct:   661 AVAVCPLGDKLYVVGGYDGHTYLNTVESYD-AQKD------EWKEEVPVNIGRAG-ACVV 712

Query:   119 V 119
             V
Sbjct:   713 V 713

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

MGI|MGI:1925517 Klhdc8b "kelch domain containing 8B" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
 Identities = 48/189 (25%), Positives = 76/189 (40%)

Query:    10 LGMVT---DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWR 66
             +G+ T   DG  +Y + G  GP    P A   V +     W  LP +P P Y  +T L  
Sbjct:   118 MGVATVERDGM-VYALGGM-GPDT-APQAQVLVYEPRRDCWLSLPSMPTPCYGASTFLHG 174

Query:    67 GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVI 126
              +++V+GG          + + L  +        W     +P       C + +  +  +
Sbjct:   175 NKIYVLGGRQGKLPVTAFEAFDLETRT-------WTRHPSLPSRRAFAGCAMAEGSVFSL 227

Query:   127 GGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLP-SMPKPDSHIEFAWVLV 184
             GG     + +PG   F  SR + V  + V M D E   W  LP S+   D   +F    +
Sbjct:   228 GG-----LQQPGPHNFY-SRPHFV--NTVEMFDLEHGSWTKLPRSLRMRDKRADFVVGSL 279

Query:   185 NNSIVIVGG 193
               +IV +GG
Sbjct:   280 GGNIVAIGG 288

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6DFF6 klhl20 "Kelch-like protein 20" [Xenopus laevis (taxid:8355)]

 Score = 117 (46.2 bits), Expect = 0.00045, P = 0.00045
 Identities = 32/129 (24%), Positives = 50/129 (38%)

Query:     2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
             P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct:   393 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query:    62 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
               +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct:   450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query:   122 RLLVIGGQE 130
              +  +GG++
Sbjct:   503 MIYAVGGRD 511

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0044444 "cytoplasmic part" evidence=ISS

UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
 Identities = 32/129 (24%), Positives = 50/129 (38%)

Query:     2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
             P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct:   398 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query:    62 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
               +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct:   455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query:   122 RLLVIGGQE 130
              +  +GG++
Sbjct:   508 MIYAVGGRD 516

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029590001 SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (418 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-15
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-09
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	5e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	2e-05
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	3e-05
smart00612	47	smart00612, Kelch, Kelch domain	2e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	3e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	4e-04
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	0.001
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.002

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 38/188 (20%)

Query: 41  DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 100
           DT+TK W  +P L  PR  P   ++  R++V+GG   +     V+ W       KP E +
Sbjct: 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESW-------KPGESK 369

Query: 101 WRTEIPI--PRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM 157
           WR E P+  PR  P   CVV V++ + VIGG            I K    N+ +   V  
Sbjct: 370 WREEPPLIFPRYNP---CVVNVNNLIYVIGG------------ISK----NDELLKTVEC 410

Query: 158 LD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT-EKHPTTKKMVLVGEIFQFNL 215
              +  KW      P P SH     +  +  I ++GG +   +     +V       +N 
Sbjct: 411 FSLNTNKWSKG--SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV-----ESYNP 463

Query: 216 NTLKWHVI 223
            T KW  +
Sbjct: 464 VTNKWTEL 471

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 47/184 (25%), Positives = 67/184 (36%), Gaps = 26/184 (14%)

Query: 11  GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLH 70
           G+      IYV+ G Y                   KW++ PPL  PRY P        ++
Sbjct: 337 GVTVFNNRIYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIY 393

Query: 71  VMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 130
           V+GG  +N      D     V+       +W    P+P        +  D ++ VIGG  
Sbjct: 394 VIGGISKN------DELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI- 446

Query: 131 GDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIV 189
                   S I      N  VY+ V   +    KW  L S+  P   I  +  + NN I 
Sbjct: 447 --------SYI-----DNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIY 491

Query: 190 IVGG 193
           +VGG
Sbjct: 492 VVGG 495

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 41/152 (26%), Positives = 57/152 (37%), Gaps = 30/152 (19%)

Query: 99  KEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY 156
           K W    E+  PR  P     V ++R+ VIGG                   N +  + V 
Sbjct: 321 KSWNKVPELIYPRKNP--GVTVFNNRIYVIGG-----------------IYNSISLNTVE 361

Query: 157 MLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL 215
                E KW+  P +  P        V VNN I ++GG ++     K +    E F  +L
Sbjct: 362 SWKPGESKWREEPPLIFPRY--NPCVVNVNNLIYVIGGISKNDELLKTV----ECF--SL 413

Query: 216 NTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSG 247
           NT KW     LP       A Y +G +Y   G
Sbjct: 414 NTNKWSKGSPLPISHYGGCAIYHDGKIYVIGG 445

Length = 534

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 6  AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 57
            +    V+ G  IYV  G              V D ET  W+ LPPLP PR
Sbjct: 1  PRTGHSAVSVGGKIYVFGGYSNGSKASNKVL--VYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 21/106 (19%)

Query: 33  PTAHTFVLDTETKKWQDLPPLPV-PRYAPATQLWRGRLHVMGGSGEN-------RYTPEV 84
           P+   +  + ET++W++LP  P  PR  P     +  L+V GG G+N       +Y+P+ 
Sbjct: 137 PSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNELYVFGG-GDNIAYTDGYKYSPKT 195

Query: 85  DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGG 128
             W       + +        PI   G   A  +   +  LL IGG
Sbjct: 196 GTW-------EKVADPLSDGEPISLLG---AASIAINESLLLCIGG 231

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 19 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 61
          IYVV G  G Q         V D ET KW  LP +P PR    
Sbjct: 2  IYVVGGFDGGQR---LKSVEVYDPETNKWTPLPSMPTPRSGHG 41

Length = 47

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY 58
          G  IYV  G      R      +V D +T  W+ L  LP PR 
Sbjct: 1  GGKIYVFGGLGDGGTR--LNDLWVYDLDTNTWEKLGDLPGPRA 41

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 8  SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 54
          S  G+V  G  IYV+ G  G Q     +   V D ET  W  LP +P
Sbjct: 3  SGAGVVVLGGKIYVIGGYDGGQ---SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 18/91 (19%)

Query: 106 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWK 165
           P+ +     +  V+DD +  IGGQ G  + +      +C           Y + D+ KWK
Sbjct: 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERT----IEC-----------YTMGDD-KWK 380

Query: 166 VLPSMPKPDSHIEFAWVLVNNSIVIVGGTTE 196
           +LP M  P +   +   +++  I I+GG TE
Sbjct: 381 MLPDM--PIALSSYGMCVLDQYIYIIGGRTE 409

Length = 557

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 108 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 166
           PR   H +  + D RL + GG+  D                  V  DV++ D     W  
Sbjct: 1   PRAY-HTSTSIGDGRLYLFGGENEDG----------------SVLSDVWVFDLSTNTWTR 43

Query: 167 LPSMP 171
           LPS+P
Sbjct: 44  LPSLP 48

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
KOG1230	521	consensus Protein containing repeated kelch motifs	99.97
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.97
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.93
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.92
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.88
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.86
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.78
PF13964	50	Kelch_6: Kelch motif	99.46
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.42
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.2
PF13964	50	Kelch_6: Kelch motif	99.17
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.16
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.15
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.14
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.1
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.02
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.96
smart00612	47	Kelch Kelch domain.	98.91
PF13854	42	Kelch_5: Kelch motif	98.83
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.78
smart00612	47	Kelch Kelch domain.	98.74
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.68
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.64
PLN02772	398	guanylate kinase	98.61
PF13854	42	Kelch_5: Kelch motif	98.44
PLN02772	398	guanylate kinase	98.27
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.21
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.07
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.84
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.77
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.62
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	97.42
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.31
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.15
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.71
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	95.37
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.32
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.1
KOG2055	514	consensus WD40 repeat protein [General function pr	94.74
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	93.3
KOG2055	514	consensus WD40 repeat protein [General function pr	93.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.12
PRK04792	448	tolB translocation protein TolB; Provisional	92.57
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.54
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	92.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	92.38
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	92.32
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	92.25
PRK00178	430	tolB translocation protein TolB; Provisional	91.72
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.55
PRK04922	433	tolB translocation protein TolB; Provisional	90.22
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	89.8
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	89.78
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	88.65
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	87.79
PRK05137	435	tolB translocation protein TolB; Provisional	87.4
PRK05137	435	tolB translocation protein TolB; Provisional	85.78
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	85.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	85.29
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	84.86
PRK04043	419	tolB translocation protein TolB; Provisional	83.12
COG1520	370	FOG: WD40-like repeat [Function unknown]	82.92
PRK04792	448	tolB translocation protein TolB; Provisional	81.47
PRK03629	429	tolB translocation protein TolB; Provisional	81.28
PRK04922	433	tolB translocation protein TolB; Provisional	81.27
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	80.75
smart00284	255	OLF Olfactomedin-like domains.	80.07

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.5e-41  Score=302.01  Aligned_cols=237  Identities=19%  Similarity=0.350  Sum_probs=215.1

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      |+|.+|.++++++++++||++||.++  ....++++++||+.+++|..+++|+.+|..+++++++|.||++||.++..+.
T Consensus       318 ~m~~~r~~~~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l  395 (571)
T KOG4441|consen  318 PMPSPRCRVGVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSL  395 (571)
T ss_pred             CCCcccccccEEEECCEEEEEccccC--CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccc
Confidence            67899999999999999999999985  1246899999999999999999999999999999999999999999988888


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  160 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  160 (274)
                      .++|+|+       |.+++|..+++|+.+|.++++++++++||++||.+...                ..++.++.|| .
T Consensus       396 ~svE~YD-------p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~----------------~~l~sve~YDP~  452 (571)
T KOG4441|consen  396 NSVECYD-------PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS----------------NCLNSVECYDPE  452 (571)
T ss_pred             ccEEEec-------CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc----------------cccceEEEEcCC
Confidence            8888876       89999999999999999999999999999999987652                1468899999 9


Q ss_pred             CCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcC
Q 024009          161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG  240 (274)
Q Consensus       161 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~  240 (274)
                      +++|+.+++|+.+|.+  +++++.+++||++||.....       .+..+++|||.+++|+.+++|+.+|..++++.+++
T Consensus       453 t~~W~~~~~M~~~R~~--~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~  523 (571)
T KOG4441|consen  453 TNTWTLIAPMNTRRSG--FGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGG  523 (571)
T ss_pred             CCceeecCCccccccc--ceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcccCccccccccEEEECC
Confidence            9999999999999999  45799999999999998833       35579999999999999999999999999999999


Q ss_pred             EEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009          241 WLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       241 ~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      +||++||..+.. ..+.++|++.+|.|+...++
T Consensus       524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~  556 (571)
T KOG4441|consen  524 KLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP  556 (571)
T ss_pred             EEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence            999999988766 66778999999999987763

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=299.80  Aligned_cols=250  Identities=14%  Similarity=0.174  Sum_probs=203.0

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      |+|.+|.++++++++++||++||.....  ...+++++||+.+++|..+++||.+|..++++.++++||++||..+....
T Consensus       289 ~mp~~r~~~~~a~l~~~IYviGG~~~~~--~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~  366 (557)
T PHA02713        289 TIPNHIINYASAIVDNEIIIAGGYNFNN--PSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVE  366 (557)
T ss_pred             CCCccccceEEEEECCEEEEEcCCCCCC--CccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCC
Confidence            5678888999999999999999975322  34689999999999999999999999999999999999999998655444


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccc--ccCceeecCceEEeC
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC--SRRNEVVYDDVYMLD  159 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d  159 (274)
                      .++++|+       +.+++|+.+++||.++.++++++++++||++||.+....-.. ....+.  .......++.++.||
T Consensus       367 ~sve~Yd-------p~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~-~~~~~~~~~~~~~~~~~~ve~YD  438 (557)
T PHA02713        367 RTIECYT-------MGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTS-VHHMNSIDMEEDTHSSNKVIRYD  438 (557)
T ss_pred             ceEEEEE-------CCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccc-ccccccccccccccccceEEEEC
Confidence            5566555       899999999999999999999999999999999864310000 000000  000011256799999


Q ss_pred             -CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCC-CceEEeccCCCccceeeeEE
Q 024009          160 -DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT-LKWHVIGKLPYRVKTTLAGY  237 (274)
Q Consensus       160 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~-~~W~~~~~~p~~~~~~~~~~  237 (274)
                       .+++|+.+++|+.+|..  ++++.++++||++||......      ..+.+++|||.+ ++|+.+++||.+|..+++++
T Consensus       439 P~td~W~~v~~m~~~r~~--~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        439 TVNNIWETLPNFWTGTIR--PGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             CCCCeEeecCCCCccccc--CcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence             89999999999999987  567999999999999764332      234689999999 89999999999999999999


Q ss_pred             EcCEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009          238 WNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       238 ~~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~  271 (274)
                      ++|+||++||.+.  ..+.+.|++.++.|....+
T Consensus       511 ~~~~iyv~Gg~~~--~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        511 HDNTIMMLHCYES--YMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             ECCEEEEEeeecc--eeehhhcCcccccccchhh
Confidence            9999999999875  3467899999999987654

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.2e-36  Score=260.16  Aligned_cols=246  Identities=16%  Similarity=0.256  Sum_probs=187.0

Q ss_pred             CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC-CCC---CCceEEEECCeEEEEcCCCCC
Q 024009            3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPR---YAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r---~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      .|.+|.+|++++++++|||+||...... ...+++++||+.+++|+.+++++ .+|   ..|+++.++++||||||....
T Consensus        19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~   97 (341)
T PLN02153         19 GPGPRCSHGIAVVGDKLYSFGGELKPNE-HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK   97 (341)
T ss_pred             CCCCCCcceEEEECCEEEEECCccCCCC-ceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC
Confidence            5789999999999999999999864321 34579999999999999998764 333   368888999999999998654


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccCC-----CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI-----PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  153 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  153 (274)
                      ....++++       ||+.+++|+.++++     |.+|..|+++..+++|||+||......           ......++
T Consensus        98 ~~~~~v~~-------yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-----------~~~~~~~~  159 (341)
T PLN02153         98 REFSDFYS-------YDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL-----------MKTPERFR  159 (341)
T ss_pred             CccCcEEE-------EECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc-----------cCCCcccc
Confidence            43344444       45899999998876     788888999999999999999864310           00111246


Q ss_pred             ceEEeC-CCCCeEecCCCC---CCCccceeeEEEeCCEEEEEeccCCCCCCc-ccccccCceEEEEcCCCceEEec---c
Q 024009          154 DVYMLD-DEMKWKVLPSMP---KPDSHIEFAWVLVNNSIVIVGGTTEKHPTT-KKMVLVGEIFQFNLNTLKWHVIG---K  225 (274)
Q Consensus       154 ~~~~~d-~~~~W~~~~~~~---~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~-~~~~~~~~i~~yd~~~~~W~~~~---~  225 (274)
                      +++.|| .+++|+.++++.   .+|..  ++++..+++|||+||........ .....++++++||+.+++|+++.   .
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~  237 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGG--AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA  237 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCc--ceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence            889999 899999998764   55665  55688999999999975321100 00012568999999999999985   4


Q ss_pred             CCCccceeeeEEEcCEEEEEccccCC--------C--CCCCCceeecCCeeeee
Q 024009          226 LPYRVKTTLAGYWNGWLYFTSGQRDK--------G--PDDPAPRKVHGDMWRTK  269 (274)
Q Consensus       226 ~p~~~~~~~~~~~~~~l~~~GG~~~~--------~--~~~~~~~~~~~~~W~~~  269 (274)
                      +|.+|..+++++++++||+|||....        +  ..+...|++.++.|+..
T Consensus       238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~  291 (341)
T PLN02153        238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL  291 (341)
T ss_pred             CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence            78899999999999999999997532        1  23556788889999743

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=4.4e-37  Score=275.63  Aligned_cols=234  Identities=18%  Similarity=0.336  Sum_probs=203.9

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCC-CCCCCCC
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPE   83 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~   83 (274)
                      .+|..... ...+.||++||+....  ...+.+..||+.+++|..+++||.+|..++++++++.||++||++ +....++
T Consensus       274 ~~~t~~r~-~~~~~l~~vGG~~~~~--~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~  350 (571)
T KOG4441|consen  274 SPRTRPRR-SVSGKLVAVGGYNRQG--QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSS  350 (571)
T ss_pred             CCCcccCc-CCCCeEEEECCCCCCC--cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccce
Confidence            34433333 5678899999997622  467899999999999999999999999999999999999999998 5666666


Q ss_pred             ccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCC
Q 024009           84 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM  162 (274)
Q Consensus        84 ~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~  162 (274)
                      +++|+       +.+++|..+++|..+|..+++++.+|.||++||.++..                 .++.++.|| .++
T Consensus       351 ve~YD-------~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-----------------~l~svE~YDp~~~  406 (571)
T KOG4441|consen  351 VERYD-------PRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-----------------SLNSVECYDPVTN  406 (571)
T ss_pred             EEEec-------CCCCceeccCCccCccccceeEEECCEEEEEecccccc-----------------ccccEEEecCCCC
Confidence            66665       89999999999999999999999999999999998542                 357899999 999


Q ss_pred             CeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEE
Q 024009          163 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWL  242 (274)
Q Consensus       163 ~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l  242 (274)
                      +|+.+++|+.+|++  ++++.++++||++||......      .++.+++|||.+++|+.+++|+.+|..+++++++++|
T Consensus       407 ~W~~va~m~~~r~~--~gv~~~~g~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~i  478 (571)
T KOG4441|consen  407 KWTPVAPMLTRRSG--HGVAVLGGKLYIIGGGDGSSN------CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKI  478 (571)
T ss_pred             cccccCCCCcceee--eEEEEECCEEEEEcCcCCCcc------ccceEEEEcCCCCceeecCCcccccccceEEEECCEE
Confidence            99999999998887  678999999999999877764      4779999999999999999999999999999999999


Q ss_pred             EEEccccCCC-CCCCCceeecCCeeeeeeccC
Q 024009          243 YFTSGQRDKG-PDDPAPRKVHGDMWRTKLLLN  273 (274)
Q Consensus       243 ~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~~  273 (274)
                      |++||.++.. ....+.|++.++.|+...+|.
T Consensus       479 YvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~  510 (571)
T KOG4441|consen  479 YVVGGFDGTSALSSVERYDPETNQWTMVAPMT  510 (571)
T ss_pred             EEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence            9999998833 445678999999999987765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=2.1e-36  Score=256.84  Aligned_cols=230  Identities=17%  Similarity=0.234  Sum_probs=181.6

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCe----eeCCCCCCCCCCceEEEECCeEEEEcCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGE   77 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~   77 (274)
                      |+|.+|.++++++++++||++||.++.+   .++++++||+.+++|    +.++++|.+|..|++++++++|||+||...
T Consensus        58 ~lp~~r~~~~~~~~~~~lyviGG~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~  134 (323)
T TIGR03548        58 QLPYEAAYGASVSVENGIYYIGGSNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN  134 (323)
T ss_pred             cCCccccceEEEEECCEEEEEcCCCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC
Confidence            5678898888889999999999986533   468999999999998    788999999999999999999999999753


Q ss_pred             CCCCCCccceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceE
Q 024009           78 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY  156 (274)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (274)
                      ....+       +++.||+.+++|+.++++|. +|..++++.++++|||+||.+...                  ..+++
T Consensus       135 ~~~~~-------~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~------------------~~~~~  189 (323)
T TIGR03548       135 GKPSN-------KSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA------------------YTDGY  189 (323)
T ss_pred             CccCc-------eEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc------------------ccceE
Confidence            33323       34555699999999998874 677788889999999999975331                  24678


Q ss_pred             EeC-CCCCeEecCCCC---CCCccce-eeEEEeCCEEEEEeccCCCCCC-------------------------cccccc
Q 024009          157 MLD-DEMKWKVLPSMP---KPDSHIE-FAWVLVNNSIVIVGGTTEKHPT-------------------------TKKMVL  206 (274)
Q Consensus       157 ~~d-~~~~W~~~~~~~---~~~~~~~-~~~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~  206 (274)
                      .|| .+++|+.+++++   .++...+ ++++..+++|||+||.......                         .+...+
T Consensus       190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (323)
T TIGR03548       190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW  269 (323)
T ss_pred             EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence            899 899999998763   3443322 3345568999999998642100                         000112


Q ss_pred             cCceEEEEcCCCceEEeccCC-CccceeeeEEEcCEEEEEccccCCCCCCCCce
Q 024009          207 VGEIFQFNLNTLKWHVIGKLP-YRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPR  259 (274)
Q Consensus       207 ~~~i~~yd~~~~~W~~~~~~p-~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~  259 (274)
                      .+++++||+.+++|+.++++| .+|..++++.++++||++||..+++.+++.+|
T Consensus       270 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~~~  323 (323)
T TIGR03548       270 NRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGVRTPDIY  323 (323)
T ss_pred             CceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCcCCcCcC
Confidence            468999999999999999887 57888999999999999999999999988764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=273.67  Aligned_cols=234  Identities=21%  Similarity=0.314  Sum_probs=195.6

Q ss_pred             cCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccc
Q 024009            7 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH   86 (274)
Q Consensus         7 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~   86 (274)
                      +.+++++++++.||++||.....  ...++++.||+.+++|..++++|.+|..|+++.++++||++||........++++
T Consensus       285 ~~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~  362 (534)
T PHA03098        285 VYCFGSVVLNNVIYFIGGMNKNN--LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVES  362 (534)
T ss_pred             cccceEEEECCEEEEECCCcCCC--CeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEE
Confidence            44568899999999999986543  3467899999999999999999999999999999999999999864433344444


Q ss_pred             eEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeE
Q 024009           87 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK  165 (274)
Q Consensus        87 ~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~  165 (274)
                             ||+.+++|+..+++|.+|.+++++.++++||++||.....                ..+++++.|| .+++|+
T Consensus       363 -------yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~----------------~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        363 -------WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND----------------ELLKTVECFSLNTNKWS  419 (534)
T ss_pred             -------EcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCC----------------cccceEEEEeCCCCeee
Confidence                   4589999999999999999999999999999999975431                1257899999 899999


Q ss_pred             ecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEE
Q 024009          166 VLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFT  245 (274)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~  245 (274)
                      .++++|.+|..  ++++..+++||++||........    ..+.+++||+.+++|+.++++|.+|..++++.++++||++
T Consensus       420 ~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~  493 (534)
T PHA03098        420 KGSPLPISHYG--GCAIYHDGKIYVIGGISYIDNIK----VYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVV  493 (534)
T ss_pred             ecCCCCccccC--ceEEEECCEEEEECCccCCCCCc----ccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEE
Confidence            99999999887  55688999999999976543211    2457999999999999999999999999999999999999


Q ss_pred             ccccCCC-CCCCCceeecCCeeeeeec
Q 024009          246 SGQRDKG-PDDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       246 GG~~~~~-~~~~~~~~~~~~~W~~~~~  271 (274)
                      ||.+... ..+...|++.++.|+...+
T Consensus       494 GG~~~~~~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             cCCcCCcccceeEEEeCCCCEEEecCC
Confidence            9988655 5567889999999985443

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=9.4e-36  Score=264.30  Aligned_cols=208  Identities=16%  Similarity=0.274  Sum_probs=179.7

Q ss_pred             eEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeee
Q 024009           12 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV   91 (274)
Q Consensus        12 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~   91 (274)
                      ++.+++.||++||..+.   ...+.++.||+.+++|..+++|+.+|..++++.++++||++||....   .+++.|+   
T Consensus       267 ~~~~~~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~yd---  337 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWF---  337 (480)
T ss_pred             eEEECCEEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEE---
Confidence            44589999999998543   35688999999999999999999999999999999999999997532   4455554   


Q ss_pred             ecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCC
Q 024009           92 KDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM  170 (274)
Q Consensus        92 ~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~  170 (274)
                          +.+++|..+++||.+|.++++++++++||++||....                   .+.++.|| .+++|+.+++|
T Consensus       338 ----p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-------------------~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        338 ----HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-------------------DTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ----CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-------------------CccEEEEeCCCCEEEeCCCC
Confidence                8899999999999999999999999999999997533                   13567788 89999999999


Q ss_pred             CCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccC
Q 024009          171 PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRD  250 (274)
Q Consensus       171 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~  250 (274)
                      +.+|..  ++++..+++||++||               .+++||+++++|+.+++||.+|..+++++++++||++||...
T Consensus       395 ~~~r~~--~~~~~~~~~IYv~GG---------------~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~  457 (480)
T PHA02790        395 YYPHYK--SCALVFGRRLFLVGR---------------NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR  457 (480)
T ss_pred             CCcccc--ceEEEECCEEEEECC---------------ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence            999987  456889999999997               367899999999999999999999999999999999999864


Q ss_pred             CC-CCCCCceeecCCeeee
Q 024009          251 KG-PDDPAPRKVHGDMWRT  268 (274)
Q Consensus       251 ~~-~~~~~~~~~~~~~W~~  268 (274)
                      .. ....+.|++..|.|+.
T Consensus       458 ~~~~~~ve~Yd~~~~~W~~  476 (480)
T PHA02790        458 GSYIDTIEVYNNRTYSWNI  476 (480)
T ss_pred             CcccceEEEEECCCCeEEe
Confidence            33 4567899999999974

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=5.1e-35  Score=258.95  Aligned_cols=232  Identities=16%  Similarity=0.243  Sum_probs=184.7

Q ss_pred             CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCC---CCC-CCCCceEEEECCeEEEEcCCCCC
Q 024009            3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPV-PRYAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~~~-~r~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      .|.+|.+|++++++++||++||...... ...+++|+||+.+++|+.+++   +|. +|..|+++.++++||||||....
T Consensus       162 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~  240 (470)
T PLN02193        162 GPGLRCSHGIAQVGNKIYSFGGEFTPNQ-PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS  240 (470)
T ss_pred             CCCCccccEEEEECCEEEEECCcCCCCC-CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC
Confidence            4789999999999999999999854332 234789999999999998864   343 35688889999999999998654


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccCC---CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV  155 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (274)
                      ...++       ++.||+.+++|+.++++   |.+|..|+++..+++|||+||.....                 .++++
T Consensus       241 ~~~nd-------v~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-----------------~~~~~  296 (470)
T PLN02193        241 RQYNG-------FYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-----------------RLKTL  296 (470)
T ss_pred             CCCcc-------EEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-----------------CcceE
Confidence            33333       44445899999999887   78898899999999999999986431                 24688


Q ss_pred             EEeC-CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc---CCC
Q 024009          156 YMLD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK---LPY  228 (274)
Q Consensus       156 ~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~---~p~  228 (274)
                      +.|| .+++|+.+++   ++.+|..  ++++.++++||++||....        .++++++||+++++|+.+.+   .|.
T Consensus       297 ~~yd~~t~~W~~~~~~~~~~~~R~~--~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~  366 (470)
T PLN02193        297 DSYNIVDKKWFHCSTPGDSFSIRGG--AGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPS  366 (470)
T ss_pred             EEEECCCCEEEeCCCCCCCCCCCCC--cEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCC
Confidence            9999 8999998875   5566766  5567889999999997543        24689999999999999854   488


Q ss_pred             ccceeeeEEEcCEEEEEccccCCC----------CCCCCceeecCCeeeee
Q 024009          229 RVKTTLAGYWNGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTK  269 (274)
Q Consensus       229 ~~~~~~~~~~~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~  269 (274)
                      +|..++++.++++||+|||.....          ..+..+|++.++.|+..
T Consensus       367 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        367 ERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             CcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            999999999999999999986421          12456788888888844

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.8e-34  Score=247.42  Aligned_cols=237  Identities=21%  Similarity=0.350  Sum_probs=174.0

Q ss_pred             CCC-CCcCceeeEEeCCEEEEEcCcCCCC---CCCCCCeeEEEECCCCCeeeCC-CCCCCCCCceEE-EECCeEEEEcCC
Q 024009            2 PRE-MAHSHLGMVTDGRYIYVVTGQYGPQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGS   75 (274)
Q Consensus         2 p~~-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~   75 (274)
                      |+| .+|.++++++++++|||+||.....   ....++++++||+.+++|+.++ ++|.+|..++++ .++++||++||.
T Consensus        48 ~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~  127 (346)
T TIGR03547        48 DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV  127 (346)
T ss_pred             CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc
Confidence            455 5899999999999999999985322   1124789999999999999997 567777777776 679999999997


Q ss_pred             CCCCC---CCCc------------------------cceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEc
Q 024009           76 GENRY---TPEV------------------------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIG  127 (274)
Q Consensus        76 ~~~~~---~~~~------------------------~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~G  127 (274)
                      ....+   ...+                        ..+..++..||+.+++|+.++++|. ++.+++++.++++|||+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G  207 (346)
T TIGR03547       128 NKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN  207 (346)
T ss_pred             ChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence            53210   0000                        0011245566699999999999986 678888999999999999


Q ss_pred             cCCCCCCCCCCCCccccccCceeecCce--EEeC-CCCCeEecCCCCCCCcc-----ceeeEEEeCCEEEEEeccCCCCC
Q 024009          128 GQEGDFMAKPGSPIFKCSRRNEVVYDDV--YMLD-DEMKWKVLPSMPKPDSH-----IEFAWVLVNNSIVIVGGTTEKHP  199 (274)
Q Consensus       128 G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d-~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~~~  199 (274)
                      |.....                ....++  |.++ .+++|+.+++||.+|..     .+++++..+++|||+||......
T Consensus       208 G~~~~~----------------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~  271 (346)
T TIGR03547       208 GEIKPG----------------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGA  271 (346)
T ss_pred             eeeCCC----------------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCc
Confidence            975331                012344  4445 56799999999887631     23446789999999999753211


Q ss_pred             C---------cc-cccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCCC
Q 024009          200 T---------TK-KMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPD  254 (274)
Q Consensus       200 ~---------~~-~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~  254 (274)
                      .         .. ....+..+++||+++++|+.+.+||.+|..+++++++++||++||....+..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~  336 (346)
T TIGR03547       272 QENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKA  336 (346)
T ss_pred             hhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCE
Confidence            0         00 0001246899999999999999999999988888899999999998665543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=3.4e-34  Score=245.70  Aligned_cols=255  Identities=20%  Similarity=0.268  Sum_probs=181.4

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEEC--CCCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT--ETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      |+|.+|..+++++++++|||+||..       .+++++||+  .+++|..+++|| .+|..++++.++++|||+||....
T Consensus         3 ~lp~~~~~~~~~~~~~~vyv~GG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~   75 (346)
T TIGR03547         3 DLPVGFKNGTGAIIGDKVYVGLGSA-------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA   75 (346)
T ss_pred             CCCccccCceEEEECCEEEEEcccc-------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence            5778998888989999999999963       257899996  578999999999 589999999999999999997532


Q ss_pred             CCCCCccceEeeeecCCCCCCceeecc-CCCCCCCcceeE-EeCCEEEEEccCCCCCCCC-------CC----------C
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPHRACV-VVDDRLLVIGGQEGDFMAK-------PG----------S  139 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~~~~~-~~~~~iyv~GG~~~~~~~~-------~~----------~  139 (274)
                      ....... ...+++.||+.+++|+.++ ++|+.+.+++++ ..+++||++||.+......       .+          .
T Consensus        76 ~~~~~~~-~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T TIGR03547        76 NSEGSPQ-VFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA  154 (346)
T ss_pred             CCCCcce-ecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence            1100000 1113455569999999986 577888777666 7899999999976320000       00          0


Q ss_pred             CccccccCceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE--c
Q 024009          140 PIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN--L  215 (274)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd--~  215 (274)
                      .++........++++++.|| .+++|+.+++||. ++..  ++++..+++|||+||......      ...+++.||  +
T Consensus       155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~--~~~~~~~~~iyv~GG~~~~~~------~~~~~~~y~~~~  226 (346)
T TIGR03547       155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG--SAIVHKGNKLLLINGEIKPGL------RTAEVKQYLFTG  226 (346)
T ss_pred             HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC--ceEEEECCEEEEEeeeeCCCc------cchheEEEEecC
Confidence            00000000001247899999 9999999999986 4655  566889999999999754321      123565555  5


Q ss_pred             CCCceEEeccCCCcc-------ceeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeeee
Q 024009          216 NTLKWHVIGKLPYRV-------KTTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       216 ~~~~W~~~~~~p~~~-------~~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~~  270 (274)
                      ++++|+++++||.+|       ..+.++.++++||++||.+..+.                  ...++|++..+.|+...
T Consensus       227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             CCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence            777999999998765       24557788999999999864221                  24578899999998776


Q ss_pred             cc
Q 024009          271 LL  272 (274)
Q Consensus       271 ~~  272 (274)
                      +|
T Consensus       307 ~l  308 (346)
T TIGR03547       307 KL  308 (346)
T ss_pred             CC
Confidence            54

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=1.8e-33  Score=238.80  Aligned_cols=234  Identities=17%  Similarity=0.208  Sum_probs=178.8

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCCCCC-------CCCCCeeEEEECCC--CCeeeCCCCCCCCCCceEEEECCeEEEEcCC
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYGPQC-------RGPTAHTFVLDTET--KKWQDLPPLPVPRYAPATQLWRGRLHVMGGS   75 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~~~d~~~--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~   75 (274)
                      ..+.++.++++++.|||+||.+.++.       ....+++++|+...  .+|..+++||.+|..++++.++++||++||.
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~   81 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS   81 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence            46778999999999999999876531       12456888886333  3799999999999988889999999999998


Q ss_pred             CCCCCCCCccceEeeeecCCCCCCce----eeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceee
Q 024009           76 GENRYTPEVDHWSLAVKDGKPLEKEW----RTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV  151 (274)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~  151 (274)
                      .......++++|+       +.+++|    +.++++|.++..+++++++++|||+||....                 ..
T Consensus        82 ~~~~~~~~v~~~d-------~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-----------------~~  137 (323)
T TIGR03548        82 NSSERFSSVYRIT-------LDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-----------------KP  137 (323)
T ss_pred             CCCCCceeEEEEE-------EcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-----------------cc
Confidence            6544444444444       556666    7889999999889999999999999997432                 11


Q ss_pred             cCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC--
Q 024009          152 YDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP--  227 (274)
Q Consensus       152 ~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p--  227 (274)
                      .++++.|| .+++|+.++++|. +|..  ++++..+++|||+||.....        ..++++||+++++|+.+.+++  
T Consensus       138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~--~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~  207 (323)
T TIGR03548       138 SNKSYLFNLETQEWFELPDFPGEPRVQ--PVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTD  207 (323)
T ss_pred             CceEEEEcCCCCCeeECCCCCCCCCCc--ceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCC
Confidence            47899999 8999999999885 5655  45688999999999975432        236899999999999987653  


Q ss_pred             ---Cccceee-eEEEcCEEEEEccccCCC---------------------------------CCCCCceeecCCeeeeee
Q 024009          228 ---YRVKTTL-AGYWNGWLYFTSGQRDKG---------------------------------PDDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       228 ---~~~~~~~-~~~~~~~l~~~GG~~~~~---------------------------------~~~~~~~~~~~~~W~~~~  270 (274)
                         ..+..++ ++..+++||++||.+...                                 .++..+|++.++.|+...
T Consensus       208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  287 (323)
T TIGR03548       208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG  287 (323)
T ss_pred             CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence               2333333 444579999999986421                                 245678999999998755


Q ss_pred             cc
Q 024009          271 LL  272 (274)
Q Consensus       271 ~~  272 (274)
                      ++
T Consensus       288 ~~  289 (323)
T TIGR03548       288 NS  289 (323)
T ss_pred             cc
Confidence            43

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=225.32  Aligned_cols=225  Identities=20%  Similarity=0.331  Sum_probs=189.0

Q ss_pred             CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECCeEEEEcCCCCCCC
Q 024009            4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRGRLHVMGGSGENRY   80 (274)
Q Consensus         4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~   80 (274)
                      |-.|++|+++..++++|+.||++..+  ...+.++.||+++++|.+.   .-+|.+|.+|+++++++.+|||||+.    
T Consensus        76 PyqRYGHtvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye----  149 (392)
T KOG4693|consen   76 PYQRYGHTVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYE----  149 (392)
T ss_pred             chhhcCceEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChH----
Confidence            45799999999999999999998765  3568899999999999886   36788999999999999999999975    


Q ss_pred             CCCccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEE
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM  157 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (274)
                       .+.+.|+.+++..|..+.+|+.+.+   .|+.|..|++.++++.+||+||..+....        -....+.+...+..
T Consensus       150 -~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~  220 (392)
T KOG4693|consen  150 -EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMA  220 (392)
T ss_pred             -HHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEE
Confidence             4456677777777799999998654   67888889999999999999998765321        12346677788899


Q ss_pred             eC-CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCCcc
Q 024009          158 LD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPYRV  230 (274)
Q Consensus       158 ~d-~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~  230 (274)
                      +| .+..|...++   .|.+|..  +++...+++||++||+++....     -.+++|+|||++..|+.|   ++-|.+|
T Consensus       221 ld~~T~aW~r~p~~~~~P~GRRS--HS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~~~Gk~P~aR  293 (392)
T KOG4693|consen  221 LDLATGAWTRTPENTMKPGGRRS--HSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVISVRGKYPSAR  293 (392)
T ss_pred             EeccccccccCCCCCcCCCcccc--cceEEEcceEEEecccchhhhh-----hhcceeecccccchheeeeccCCCCCcc
Confidence            99 9999998874   4666666  5678999999999999876431     367999999999999987   7789999


Q ss_pred             ceeeeEEEcCEEEEEccccC
Q 024009          231 KTTLAGYWNGWLYFTSGQRD  250 (274)
Q Consensus       231 ~~~~~~~~~~~l~~~GG~~~  250 (274)
                      +.+++++.++++|+|||..-
T Consensus       294 RRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  294 RRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             cceeEEEECCEEEEecCCCC
Confidence            99999999999999999654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=2e-33  Score=242.87  Aligned_cols=231  Identities=20%  Similarity=0.303  Sum_probs=170.8

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCC-CCC--CCCCCeeEEEECCCCCeeeCCC-CCCCCCCceEEE-ECCeEEEEcCCCCCC
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYG-PQC--RGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENR   79 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~-~~~--~~~~~~~~~~d~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~   79 (274)
                      .+|.++++++++++|||+||... .+.  ...++++++||+.+++|+.+++ .|.++..|+++. .+++||++||.....
T Consensus        73 ~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~  152 (376)
T PRK14131         73 GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNI  152 (376)
T ss_pred             CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHH
Confidence            48999999999999999999864 111  1346899999999999999985 467777788777 799999999975310


Q ss_pred             CC---------------------------CCccceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEccCCC
Q 024009           80 YT---------------------------PEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEG  131 (274)
Q Consensus        80 ~~---------------------------~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~  131 (274)
                      +.                           .....+..+++.||+.+++|+.++++|. ++.+++++.++++|||+||...
T Consensus       153 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~  232 (376)
T PRK14131        153 FDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIK  232 (376)
T ss_pred             HHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeEC
Confidence            00                           0000122356677799999999999986 6778888999999999999753


Q ss_pred             CCCCCCCCCccccccCceeecCceE--EeC-CCCCeEecCCCCCCCcc------ceeeEEEeCCEEEEEeccCCCCCC--
Q 024009          132 DFMAKPGSPIFKCSRRNEVVYDDVY--MLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT--  200 (274)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~d-~~~~W~~~~~~~~~~~~------~~~~~~~~~~~l~v~GG~~~~~~~--  200 (274)
                      ...           +     ..++|  .|| .+++|+.+++||.+|..      .++.++..+++|||+||.......  
T Consensus       233 ~~~-----------~-----~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~  296 (376)
T PRK14131        233 PGL-----------R-----TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAREN  296 (376)
T ss_pred             CCc-----------C-----ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhh
Confidence            311           1     23444  456 67899999999887642      223357789999999997542110  


Q ss_pred             -------c-ccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCC
Q 024009          201 -------T-KKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDK  251 (274)
Q Consensus       201 -------~-~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~  251 (274)
                             . ........+++||+++++|+.+++||.+|..++++.++++||++||....
T Consensus       297 ~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~  355 (376)
T PRK14131        297 YQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAG  355 (376)
T ss_pred             hhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCC
Confidence                   0 00000125789999999999999999999999999999999999997653

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=6e-33  Score=237.28  Aligned_cols=240  Identities=18%  Similarity=0.279  Sum_probs=171.8

Q ss_pred             CceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCC-----CCCCCCceEEEECCeEEEEcCCCCCCCCC
Q 024009            8 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTP   82 (274)
Q Consensus         8 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~   82 (274)
                      .++++++++++||++||.....   .++++++||+.+++|+.++++     |.+|..|+++..+++|||+||........
T Consensus        77 ~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~  153 (341)
T PLN02153         77 LGVRMVAVGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK  153 (341)
T ss_pred             CceEEEEECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC
Confidence            4788999999999999986532   468999999999999999877     78899999999999999999986432211


Q ss_pred             CccceEeeeecCCCCCCceeeccCCC---CCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009           83 EVDHWSLAVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  159 (274)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~W~~~~~~p---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (274)
                      ....+ .+++.||+.+++|+.++++.   .+|.++++++++++|||+||......       ..  ......+++++.||
T Consensus       154 ~~~~~-~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-------~g--G~~~~~~~~v~~yd  223 (341)
T PLN02153        154 TPERF-RTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSIL-------PG--GKSDYESNAVQFFD  223 (341)
T ss_pred             CCccc-ceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccc-------cC--CccceecCceEEEE
Confidence            11112 13455669999999988753   67778888999999999999753200       00  00111257899999


Q ss_pred             -CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCC--CcccccccCceEEEEcCCCceEEec-----cCCC
Q 024009          160 -DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLKWHVIG-----KLPY  228 (274)
Q Consensus       160 -~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~i~~yd~~~~~W~~~~-----~~p~  228 (274)
                       .+++|+.++.   +|.+|..  +++++.+++|||+||......  ........+++++||+.+++|+.+.     ++|.
T Consensus       224 ~~~~~W~~~~~~g~~P~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr  301 (341)
T PLN02153        224 PASGKWTEVETTGAKPSARSV--FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPR  301 (341)
T ss_pred             cCCCcEEeccccCCCCCCcce--eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCC
Confidence             9999999875   5677766  566889999999999743210  0011124569999999999999884     4555


Q ss_pred             ccceee-eEEE-cCEEEEEccccCCCCCCCCceeecCCeeeee
Q 024009          229 RVKTTL-AGYW-NGWLYFTSGQRDKGPDDPAPRKVHGDMWRTK  269 (274)
Q Consensus       229 ~~~~~~-~~~~-~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~  269 (274)
                      .+..++ +++. +++|||+||.....       +-.+|+|.+.
T Consensus       302 ~~~~~~~~~v~~~~~~~~~gG~~~~~-------~~~~~~~~~~  337 (341)
T PLN02153        302 GWTAYTTATVYGKNGLLMHGGKLPTN-------ERTDDLYFYA  337 (341)
T ss_pred             ccccccccccCCcceEEEEcCcCCCC-------ccccceEEEe
Confidence            555333 3333 45899999987653       1136777654

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-33  Score=251.91  Aligned_cols=214  Identities=18%  Similarity=0.235  Sum_probs=174.7

Q ss_pred             CCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCC-CCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009           34 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE-NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP  112 (274)
Q Consensus        34 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~  112 (274)
                      ...+++||+.+++|..+++||.+|..+++++++++|||+||... .....+       ++.||+.+++|..+++||.+|.
T Consensus       271 ~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~-------v~~Yd~~~n~W~~~~~m~~~R~  343 (557)
T PHA02713        271 NPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNK-------VYKINIENKIHVELPPMIKNRC  343 (557)
T ss_pred             CCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccce-------EEEEECCCCeEeeCCCCcchhh
Confidence            35789999999999999999999999999999999999999742 222233       3444589999999999999999


Q ss_pred             cceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009          113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIV  191 (274)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~  191 (274)
                      .++++.++++||++||.++..                 .++.++.|| .+++|+.+++||.++..  ++++..+++||++
T Consensus       344 ~~~~~~~~g~IYviGG~~~~~-----------------~~~sve~Ydp~~~~W~~~~~mp~~r~~--~~~~~~~g~IYvi  404 (557)
T PHA02713        344 RFSLAVIDDTIYAIGGQNGTN-----------------VERTIECYTMGDDKWKMLPDMPIALSS--YGMCVLDQYIYII  404 (557)
T ss_pred             ceeEEEECCEEEEECCcCCCC-----------------CCceEEEEECCCCeEEECCCCCccccc--ccEEEECCEEEEE
Confidence            999999999999999975331                 245788999 89999999999999988  4568899999999


Q ss_pred             eccCCCCCCc-----------ccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCC--CCCCc
Q 024009          192 GGTTEKHPTT-----------KKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGP--DDPAP  258 (274)
Q Consensus       192 GG~~~~~~~~-----------~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~--~~~~~  258 (274)
                      ||........           .....++.+++|||.+++|+.+++|+.+|..+++++++++||++||.++...  ...+.
T Consensus       405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~  484 (557)
T PHA02713        405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFR  484 (557)
T ss_pred             eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEE
Confidence            9976432100           0001256899999999999999999999999999999999999999865332  23467


Q ss_pred             eeecC-CeeeeeeccC
Q 024009          259 RKVHG-DMWRTKLLLN  273 (274)
Q Consensus       259 ~~~~~-~~W~~~~~~~  273 (274)
                      |++.+ +.|+...+|.
T Consensus       485 Ydp~~~~~W~~~~~m~  500 (557)
T PHA02713        485 YNTNTYNGWELITTTE  500 (557)
T ss_pred             ecCCCCCCeeEccccC
Confidence            99998 7999877764

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=1.6e-32  Score=243.07  Aligned_cols=229  Identities=24%  Similarity=0.329  Sum_probs=174.9

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCC---CCCCCCceEEEECCeEEEEcCCCCCCCCC
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTP   82 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~   82 (274)
                      .|.+|++++++++|||+||....   ..++++|+||+.+++|++++++   |.+|..|+++.++++|||+||........
T Consensus       218 ~~~~~~~v~~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~  294 (470)
T PLN02193        218 SCLGVRMVSIGSTLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLK  294 (470)
T ss_pred             cccceEEEEECCEEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcc
Confidence            35688999999999999998654   3478999999999999999887   88999999999999999999987554444


Q ss_pred             CccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009           83 EVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  159 (274)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (274)
                      ++++       ||+.+++|+.+++   +|.+|.++++++++++||++||....                  .+++++.||
T Consensus       295 ~~~~-------yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD  349 (470)
T PLN02193        295 TLDS-------YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYD  349 (470)
T ss_pred             eEEE-------EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEE
Confidence            4444       4589999998765   56778888999999999999997532                  147899999


Q ss_pred             -CCCCeEecCCC---CCCCccceeeEEEeCCEEEEEeccCCCCCCc--ccccccCceEEEEcCCCceEEecc------CC
Q 024009          160 -DEMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT--KKMVLVGEIFQFNLNTLKWHVIGK------LP  227 (274)
Q Consensus       160 -~~~~W~~~~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~i~~yd~~~~~W~~~~~------~p  227 (274)
                       .+++|+.++++   |.+|..  ++++..+++|||+||........  ....+.+++++||+.+++|+.+..      .|
T Consensus       350 ~~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P  427 (470)
T PLN02193        350 PVQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETP  427 (470)
T ss_pred             CCCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCC
Confidence             89999999765   667766  55688999999999986422110  011246789999999999998854      35


Q ss_pred             Cccceeee--EEEc--CEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009          228 YRVKTTLA--GYWN--GWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       228 ~~~~~~~~--~~~~--~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~  271 (274)
                      .+|..+++  ..+.  +.|++|||.....    .   ..+|.|++.+.
T Consensus       428 ~~R~~~~~~~~~~~~~~~~~~fGG~~~~~----~---~~~D~~~~~~~  468 (470)
T PLN02193        428 SSRGWTASTTGTIDGKKGLVMHGGKAPTN----D---RFDDLFFYGID  468 (470)
T ss_pred             CCCccccceeeEEcCCceEEEEcCCCCcc----c---cccceEEEecC
Confidence            66654432  2333  4599999986432    1   13899988654

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=6e-33  Score=216.27  Aligned_cols=244  Identities=19%  Similarity=0.338  Sum_probs=194.0

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCC--CCeeEEEECCCCCeeeCCC-------------CCCCCCCceEEEECCeEE
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGP--TAHTFVLDTETKKWQDLPP-------------LPVPRYAPATQLWRGRLH   70 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~d~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~iy   70 (274)
                      .|-+|+++.++++||-|||+...+-.+.  --++.+++..+-+|+.+++             .|.-|++|+++.+++++|
T Consensus        13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y   92 (392)
T KOG4693|consen   13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY   92 (392)
T ss_pred             ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence            5779999999999999999854332222  2479999999999999876             245599999999999999


Q ss_pred             EEcCCCCCCCCCCccceEeeeecCCCCCCceeecc---CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccC
Q 024009           71 VMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRR  147 (274)
Q Consensus        71 v~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  147 (274)
                      |.||++...  ..++    .+|++|+.+++|.+..   .+|.+|.+|++|++++.+||+||++.+               
T Consensus        93 vWGGRND~e--gaCN----~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~---------------  151 (392)
T KOG4693|consen   93 VWGGRNDDE--GACN----LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED---------------  151 (392)
T ss_pred             EEcCccCcc--cccc----eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH---------------
Confidence            999986432  1122    3667789999998843   489999999999999999999999866               


Q ss_pred             ceeecCceEEeC-CCCCeEecCCCC-CCCccceeeEEEeCCEEEEEeccCCCCCC--cccccccCceEEEEcCCCceEEe
Q 024009          148 NEVVYDDVYMLD-DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLKWHVI  223 (274)
Q Consensus       148 ~~~~~~~~~~~d-~~~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~i~~yd~~~~~W~~~  223 (274)
                      ..+|++|++.+| .+.+|+.+.... .+|.+--+++.+.++.+||+||......+  ++.+.+.++|-.+|+.+..|++-
T Consensus       152 a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~  231 (392)
T KOG4693|consen  152 AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT  231 (392)
T ss_pred             HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence            677899999999 999999887542 33444446678889999999998776543  33445678999999999999986


Q ss_pred             ---ccCCCccceeeeEEEcCEEEEEccccCCCC---CCCCceeecCCeeeeee
Q 024009          224 ---GKLPYRVKTTLAGYWNGWLYFTSGQRDKGP---DDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       224 ---~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~---~~~~~~~~~~~~W~~~~  270 (274)
                         +..|..|++|++.+++++||+|||++..-.   .+...|+..+.+|++..
T Consensus       232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             CCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence               457899999999999999999999987432   34445667777887654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.2e-31  Score=231.72  Aligned_cols=255  Identities=21%  Similarity=0.314  Sum_probs=179.8

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECC--CCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE--TKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      |+|.+|..+++++++++|||+||...       +.+++||+.  +++|..++++| .+|..++++.++++|||+||....
T Consensus        24 ~lP~~~~~~~~~~~~~~iyv~gG~~~-------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~   96 (376)
T PRK14131         24 DLPVPFKNGTGAIDNNTVYVGLGSAG-------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKT   96 (376)
T ss_pred             CCCcCccCCeEEEECCEEEEEeCCCC-------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCC
Confidence            56778777788999999999999632       458899987  47899999998 589999999999999999997631


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccC-CCCCCCcceeEE-eCCEEEEEccCCCCCCC-----------------CCCC
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVV-VDDRLLVIGGQEGDFMA-----------------KPGS  139 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~-----------------~~~~  139 (274)
                      .. ........+++.||+.+++|+.+++ .|+.+.+|+++. .+++||++||.......                 ++..
T Consensus        97 ~~-~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~  175 (376)
T PRK14131         97 NS-EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKIND  175 (376)
T ss_pred             CC-CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHH
Confidence            10 0011122346666799999999885 577777777666 89999999997532000                 0000


Q ss_pred             CccccccCceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceE--EEEc
Q 024009          140 PIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIF--QFNL  215 (274)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~--~yd~  215 (274)
                      ..+........+.++++.|| .+++|+.++++|. ++..  ++++..+++|||+||......      ...+++  .||+
T Consensus       176 ~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~--~a~v~~~~~iYv~GG~~~~~~------~~~~~~~~~~~~  247 (376)
T PRK14131        176 AYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG--SAVVIKGNKLWLINGEIKPGL------RTDAVKQGKFTG  247 (376)
T ss_pred             HHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc--ceEEEECCEEEEEeeeECCCc------CChhheEEEecC
Confidence            00000001112357899999 8999999999986 5555  556888999999999754321      122444  5677


Q ss_pred             CCCceEEeccCCCccc--------eeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeee
Q 024009          216 NTLKWHVIGKLPYRVK--------TTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTK  269 (274)
Q Consensus       216 ~~~~W~~~~~~p~~~~--------~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~  269 (274)
                      ++++|+.+.+||.+|.        .+.+++++++||++||....+.                  ...++|++.++.|+..
T Consensus       248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  327 (376)
T PRK14131        248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV  327 (376)
T ss_pred             CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence            8999999999987763        2335678999999999875331                  1346799999999865


Q ss_pred             ecc
Q 024009          270 LLL  272 (274)
Q Consensus       270 ~~~  272 (274)
                      .+|
T Consensus       328 ~~l  330 (376)
T PRK14131        328 GEL  330 (376)
T ss_pred             CcC
Confidence            443

>PHA03098 kelch-like protein; Provisional

Probab=99.97  E-value=7.7e-30  Score=230.65  Aligned_cols=197  Identities=25%  Similarity=0.371  Sum_probs=162.4

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCC-CC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN-RY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~   80 (274)
                      |+|.+|.++++++++++||++||....   ...+++++||+.+++|+.++++|.+|..++++.++++||++||.... ..
T Consensus       328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~  404 (534)
T PHA03098        328 ELIYPRKNPGVTVFNNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL  404 (534)
T ss_pred             CCCcccccceEEEECCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc
Confidence            356789999999999999999998643   34688999999999999999999999999999999999999996432 22


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ..+       ++.||+.+++|+.++++|.++.+++++..+++||++||.....              .....+.++.|| 
T Consensus       405 ~~~-------v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------------~~~~~~~v~~yd~  463 (534)
T PHA03098        405 LKT-------VECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID--------------NIKVYNIVESYNP  463 (534)
T ss_pred             cce-------EEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC--------------CCcccceEEEecC
Confidence            233       3444589999999999999999999999999999999976431              001135699999 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK  231 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~  231 (274)
                      .+++|+.+++++.+|..  ++++..+++|||+||.....       ..+++++||+++++|+.++.+|....
T Consensus       464 ~~~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~~~  526 (534)
T PHA03098        464 VTNKWTELSSLNFPRIN--ASLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCKFPKVIG  526 (534)
T ss_pred             CCCceeeCCCCCccccc--ceEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCCCccccc
Confidence            89999999999988877  45677899999999987543       25689999999999999987776543

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=5.2e-30  Score=227.64  Aligned_cols=174  Identities=20%  Similarity=0.358  Sum_probs=148.0

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      |++.+|..+++++++++||++||..+      .+++++||+.+++|+.+++||.+|..++++.++++||++||....  .
T Consensus       304 ~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~  375 (480)
T PHA02790        304 PMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--D  375 (480)
T ss_pred             CCCchhhcceEEEECCEEEEECCcCC------CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--C
Confidence            56789999999999999999999742      256899999999999999999999999999999999999997532  2


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCC
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDE  161 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  161 (274)
                      .++++|       ||.+++|+.+++|+.++..+++++++++||++||.                       .++|.+ .+
T Consensus       376 ~~ve~y-------dp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-----------------------~e~ydp-~~  424 (480)
T PHA02790        376 TTTEYL-------LPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-----------------------AEFYCE-SS  424 (480)
T ss_pred             ccEEEE-------eCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-----------------------eEEecC-CC
Confidence            344444       48999999999999999999999999999999983                       234433 89


Q ss_pred             CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009          162 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI  223 (274)
Q Consensus       162 ~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~  223 (274)
                      ++|+.+++|+.+|..  +++++.+++||++||.....       .++.+++||+.+++|+..
T Consensus       425 ~~W~~~~~m~~~r~~--~~~~v~~~~IYviGG~~~~~-------~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        425 NTWTLIDDPIYPRDN--PELIIVDNKLLLIGGFYRGS-------YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             CcEeEcCCCCCCccc--cEEEEECCEEEEECCcCCCc-------ccceEEEEECCCCeEEec
Confidence            999999999999987  56789999999999986432       246899999999999864

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.97  E-value=5.6e-30  Score=210.31  Aligned_cols=247  Identities=19%  Similarity=0.321  Sum_probs=195.4

Q ss_pred             CCCCCCcCceeeEEe--CCEEEEEcCcCCCCCC-CCCCeeEEEECCCCCeeeC--CCCCCCCCCceEEEE-CCeEEEEcC
Q 024009            1 MPREMAHSHLGMVTD--GRYIYVVTGQYGPQCR-GPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus         1 ~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~-~~~~~~~~~d~~~~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      +|.|+||.+.++++.  .+.+++|||...+.+. -..+++|.||.++++|..+  +..|.||+.|.++++ .+.+|+|||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence            488999999998887  6689999998654433 3478999999999999998  567889999999998 589999999


Q ss_pred             CCCC------CCCCCccceEeeeecCCCCCCceeecc--CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccccc
Q 024009           75 SGEN------RYTPEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR  146 (274)
Q Consensus        75 ~~~~------~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  146 (274)
                      ....      .++.+..+|+       ..+++|..+.  .-|.+|.+|.++.++.+|+||||+.+.             +
T Consensus       141 EfaSPnq~qF~HYkD~W~fd-------~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-------------n  200 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFD-------LKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-------------N  200 (521)
T ss_pred             ccCCcchhhhhhhhheeeee-------eccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-------------C
Confidence            6422      1234444444       7899999854  478999999999999999999998754             6


Q ss_pred             CceeecCceEEeC-CCCCeEecCC---CCCCCccceeeEEEe-CCEEEEEeccCCCCC--CcccccccCceEEEEcCC--
Q 024009          147 RNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEFAWVLV-NNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNT--  217 (274)
Q Consensus       147 ~~~~~~~~~~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~--~~~~~~~~~~i~~yd~~~--  217 (274)
                      +...|++|+|+|| .+-+|+.+.+   .|.+|++  |.+.+. ++.|||.||++....  ........++++.+++.+  
T Consensus       201 r~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG--cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~  278 (521)
T KOG1230|consen  201 RDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG--CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGR  278 (521)
T ss_pred             CceEEeeeeEEEeccceeeeeccCCCCCCCCCCc--ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCC
Confidence            7888999999999 9999999875   3778887  544554 999999999987532  233455678999999988  


Q ss_pred             ---CceEEe---ccCCCccceeeeEEE-cCEEEEEccccCCC----------CCCCCceeecCCeeeee
Q 024009          218 ---LKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTK  269 (274)
Q Consensus       218 ---~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~  269 (274)
                         ..|+.+   +--|.+|.+.++++. +++-|+|||.++-.          ..++..|++..+.|+..
T Consensus       279 ~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  279 EDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             CcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence               678877   445889988888777 45999999988832          34556788888888754

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=218.21  Aligned_cols=236  Identities=22%  Similarity=0.365  Sum_probs=191.6

Q ss_pred             CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC---CCCCCCCCceEEEECCeEEEEcCCCC-C
Q 024009            3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGE-N   78 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~-~   78 (274)
                      .|.+|..|+++..++++||+||.......... ++|++|..+..|....   ..|.+|++|.+++++++||+|||... .
T Consensus        57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~  135 (482)
T KOG0379|consen   57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY  135 (482)
T ss_pred             CcchhhccceeEECCEEEEECCCCCCCccccc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence            47789999999999999999998766643333 6999999999998864   56789999999999999999999874 2


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV  155 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (274)
                      .+..       ++..+|+.+.+|..+.+   .|.+|.+|+++.++++|||+||......                .++++
T Consensus       136 ~~~~-------~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~----------------~~ndl  192 (482)
T KOG0379|consen  136 RNLN-------ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD----------------SLNDL  192 (482)
T ss_pred             CChh-------heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc----------------ceeee
Confidence            2222       44555699999998654   6888999999999999999999876521                47899


Q ss_pred             EEeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCC
Q 024009          156 YMLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPY  228 (274)
Q Consensus       156 ~~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~  228 (274)
                      |+|| ++.+|.++.   +.|.||..  +++++.+++++|+||......      ++++++++|+.+.+|..+   +.+|.
T Consensus       193 ~i~d~~~~~W~~~~~~g~~P~pR~g--H~~~~~~~~~~v~gG~~~~~~------~l~D~~~ldl~~~~W~~~~~~g~~p~  264 (482)
T KOG0379|consen  193 HIYDLETSTWSELDTQGEAPSPRYG--HAMVVVGNKLLVFGGGDDGDV------YLNDVHILDLSTWEWKLLPTGGDLPS  264 (482)
T ss_pred             eeeccccccceecccCCCCCCCCCC--ceEEEECCeEEEEeccccCCc------eecceEeeecccceeeeccccCCCCC
Confidence            9999 999998886   44666766  677999999999999883333      688999999999999965   67899


Q ss_pred             ccceeeeEEEcCEEEEEccccCC---CCCCCCceeecCCeeeeee
Q 024009          229 RVKTTLAGYWNGWLYFTSGQRDK---GPDDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       229 ~~~~~~~~~~~~~l~~~GG~~~~---~~~~~~~~~~~~~~W~~~~  270 (274)
                      +|..|.+++.+++++++||...+   ...+...++++...|....
T Consensus       265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~  309 (482)
T KOG0379|consen  265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVE  309 (482)
T ss_pred             CcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeee
Confidence            99999999999999999998775   2344445555677776543

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=189.50  Aligned_cols=206  Identities=24%  Similarity=0.403  Sum_probs=167.2

Q ss_pred             CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC---CCCCCCCCceEEEECCeEEEEcCCCCCC
Q 024009            3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENR   79 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~   79 (274)
                      .|.+|.+|+++.++++||+|||.+...  ..+++++.||+.+++|..+.   ..|.+|.+|+++.++++||||||.....
T Consensus       109 ~p~~r~g~~~~~~~~~l~lfGG~~~~~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~  186 (482)
T KOG0379|consen  109 EPSPRYGHSLSAVGDKLYLFGGTDKKY--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG  186 (482)
T ss_pred             CCCcccceeEEEECCeEEEEccccCCC--CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc
Confidence            468999999999999999999998632  45789999999999999974   4688999999999999999999987554


Q ss_pred             CCCCccceEeeeecCCCCCCceeecc---CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceE
Q 024009           80 YTPEVDHWSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY  156 (274)
Q Consensus        80 ~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (274)
                      .      +..+++.||+.+.+|.++.   +.|.+|.+|++++++++++|+||...                .+.+++|+|
T Consensus       187 ~------~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~----------------~~~~l~D~~  244 (482)
T KOG0379|consen  187 D------SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD----------------GDVYLNDVH  244 (482)
T ss_pred             c------ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc----------------CCceecceE
Confidence            1      2335666678999999854   47889999999999999999999773                355789999


Q ss_pred             EeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---c-cCCC
Q 024009          157 MLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---G-KLPY  228 (274)
Q Consensus       157 ~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~-~~p~  228 (274)
                      .+| .+.+|..++   ..|.+|..  ++.+..+++++++||......     ..+.++|.||.++..|..+   . ..|.
T Consensus       245 ~ldl~~~~W~~~~~~g~~p~~R~~--h~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~~~~~~  317 (482)
T KOG0379|consen  245 ILDLSTWEWKLLPTGGDLPSPRSG--HSLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVGVVRPS  317 (482)
T ss_pred             eeecccceeeeccccCCCCCCcce--eeeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeecccccccc
Confidence            999 889999765   46788887  555799999999999876411     0367999999999999987   3 3466


Q ss_pred             ccceeeeEEEc
Q 024009          229 RVKTTLAGYWN  239 (274)
Q Consensus       229 ~~~~~~~~~~~  239 (274)
                      ++..++.+...
T Consensus       318 ~~~~~~~~~~~  328 (482)
T KOG0379|consen  318 PRLGHAAELID  328 (482)
T ss_pred             ccccccceeec
Confidence            66666665553

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1.7e-24  Score=182.66  Aligned_cols=239  Identities=20%  Similarity=0.287  Sum_probs=180.2

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECCeEEEEcCCC-C
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRGRLHVMGGSG-E   77 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~-~   77 (274)
                      |-|-+|.+|.++.+...|.+|||.+.    ....+++.||..+++|..-   .+.|.+-..|..+..+.+||+|||.. .
T Consensus        28 PvPrpRHGHRAVaikELiviFGGGNE----GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEY  103 (830)
T KOG4152|consen   28 PVPRPRHGHRAVAIKELIVIFGGGNE----GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEY  103 (830)
T ss_pred             CCCCccccchheeeeeeEEEecCCcc----cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeee
Confidence            77889999999999999999999754    3578999999999999764   47788888888888899999999964 2


Q ss_pred             CCCCCCccceEeeeecCCCCCCceeeccC-------CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCcee
Q 024009           78 NRYTPEVDHWSLAVKDGKPLEKEWRTEIP-------IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV  150 (274)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-------~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  150 (274)
                      ..|.+       ++|+.-..-..|+++.+       .|-+|-+|+..+++++.|+|||..++.-        ...++-..
T Consensus       104 GkYsN-------dLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdse--------DpknNvPr  168 (830)
T KOG4152|consen  104 GKYSN-------DLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE--------DPKNNVPR  168 (830)
T ss_pred             ccccc-------hHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccccc--------Ccccccch
Confidence            23333       33433344556776543       5678889999999999999999865521        11245667


Q ss_pred             ecCceEEeC-CCC----CeEecC---CCCCCCccceeeEEEe------CCEEEEEeccCCCCCCcccccccCceEEEEcC
Q 024009          151 VYDDVYMLD-DEM----KWKVLP---SMPKPDSHIEFAWVLV------NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  216 (274)
Q Consensus       151 ~~~~~~~~d-~~~----~W~~~~---~~~~~~~~~~~~~~~~------~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~  216 (274)
                      |++|+|.++ ...    .|....   .+|.+|..|.  +++.      ..+++|+||+++.-        +.++|.+|++
T Consensus       169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT--AViY~eKDs~~skmvvyGGM~G~R--------LgDLW~Ldl~  238 (830)
T KOG4152|consen  169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT--AVIYTEKDSKKSKMVVYGGMSGCR--------LGDLWTLDLD  238 (830)
T ss_pred             hhcceEEEEeccCCceEEEecccccCCCCCCcccce--eEEEEeccCCcceEEEEccccccc--------ccceeEEecc
Confidence            899999997 322    487654   6788898853  3443      24899999998763        7799999999


Q ss_pred             CCceEEe---ccCCCccceeeeEEEcCEEEEEccccCCC---------------CCCCCceeecCCeeeee
Q 024009          217 TLKWHVI---GKLPYRVKTTLAGYWNGWLYFTSGQRDKG---------------PDDPAPRKVHGDMWRTK  269 (274)
Q Consensus       217 ~~~W~~~---~~~p~~~~~~~~~~~~~~l~~~GG~~~~~---------------~~~~~~~~~~~~~W~~~  269 (274)
                      +-+|.+.   +..|-+|..|++..++++||+|||..-.-               ...+...++.++-|.+.
T Consensus       239 Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl  309 (830)
T KOG4152|consen  239 TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL  309 (830)
T ss_pred             eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence            9999875   56788899999999999999999964311               22344555666667654

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=8.8e-23  Score=168.20  Aligned_cols=201  Identities=22%  Similarity=0.386  Sum_probs=152.3

Q ss_pred             CCCCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc--CCCCCCCcceeEEeC-CEEEE
Q 024009           51 PPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVVD-DRLLV  125 (274)
Q Consensus        51 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~~~~~~~~~~~-~~iyv  125 (274)
                      -+.|.+|..+++++.  .+.|++|||.-..  -....+|+ ++|.||+.+++|+.+.  ..|.+|++|.++++. +.+||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~n--gqkT~vYn-dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~  137 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYN--GQKTHVYN-DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL  137 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeec--ceeEEEee-eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE
Confidence            356889999999987  6699999995422  12234444 8999999999999854  467788888887775 88999


Q ss_pred             EccCCCCCCCCCCCCccccccCceee--cCceEEeC-CCCCeEecC--CCCCCCccceeeEEEeCCEEEEEeccCCCCCC
Q 024009          126 IGGQEGDFMAKPGSPIFKCSRRNEVV--YDDVYMLD-DEMKWKVLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT  200 (274)
Q Consensus       126 ~GG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d-~~~~W~~~~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~  200 (274)
                      +||-...             .+...|  +.|+|.|| .+.+|+++.  ..|.+|++  +-++....+|+||||+-.... 
T Consensus       138 fGGEfaS-------------Pnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG--HRMvawK~~lilFGGFhd~nr-  201 (521)
T KOG1230|consen  138 FGGEFAS-------------PNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG--HRMVAWKRQLILFGGFHDSNR-  201 (521)
T ss_pred             eccccCC-------------cchhhhhhhhheeeeeeccchheeeccCCCCCCCcc--ceeEEeeeeEEEEcceecCCC-
Confidence            9996543             111222  67999999 999999986  56888887  678999999999999866532 


Q ss_pred             cccccccCceEEEEcCCCceEEe---ccCCCccceeeeEEE-cCEEEEEccccCCCC-CCCCceeecCCeeeeeecc
Q 024009          201 TKKMVLVGEIFQFNLNTLKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDKGP-DDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       201 ~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~~~-~~~~~~~~~~~~W~~~~~~  272 (274)
                        ...+.|++|+||+++-+|..+   +.-|.+|.++++++. +|.||+.||++..-. .+..--..++|+|.++++.
T Consensus       202 --~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~  276 (521)
T KOG1230|consen  202 --DYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED  276 (521)
T ss_pred             --ceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence              233789999999999999988   335899999999998 899999999987431 1111112357888887654

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=8.2e-22  Score=166.52  Aligned_cols=225  Identities=20%  Similarity=0.327  Sum_probs=163.2

Q ss_pred             CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC-------CCCCCCCCceEEEECCeEEEEcCCC
Q 024009            4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-------PLPVPRYAPATQLWRGRLHVMGGSG   76 (274)
Q Consensus         4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~   76 (274)
                      |.+...++++.++.+||+|||+....  ...+++|.+.-..=.|.++.       ++|++|-+|+...++++.|+|||..
T Consensus        79 PpgcAA~GfvcdGtrilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa  156 (830)
T KOG4152|consen   79 PPGCAAFGFVCDGTRILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA  156 (830)
T ss_pred             CCchhhcceEecCceEEEEccEeeec--cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence            45566788899999999999996654  24566555544444566662       4689999999999999999999976


Q ss_pred             CCCCC--CCccceEeeeecCCCC----CCceeec---cCCCCCCCcceeEEe------CCEEEEEccCCCCCCCCCCCCc
Q 024009           77 ENRYT--PEVDHWSLAVKDGKPL----EKEWRTE---IPIPRGGPHRACVVV------DDRLLVIGGQEGDFMAKPGSPI  141 (274)
Q Consensus        77 ~~~~~--~~~~~~~~~~~~~d~~----~~~W~~~---~~~p~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~  141 (274)
                      ++..+  +.+-.|--++|..+.+    --.|...   ..+|.+|..|.++++      ..++||+||..+-         
T Consensus       157 NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~---------  227 (830)
T KOG4152|consen  157 NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC---------  227 (830)
T ss_pred             ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc---------
Confidence            54332  2333343344443332    2347653   457888888888887      3479999998754         


Q ss_pred             cccccCceeecCceEEeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcc-------cccccCce
Q 024009          142 FKCSRRNEVVYDDVYMLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK-------KMVLVGEI  210 (274)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~-------~~~~~~~i  210 (274)
                               -+.|+|.+| .+..|.+..   -.|.||+.  +++.++++++||+||-......+.       --.+.+.+
T Consensus       228 ---------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL--Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl  296 (830)
T KOG4152|consen  228 ---------RLGDLWTLDLDTLTWNKPSLSGVAPLPRSL--HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSL  296 (830)
T ss_pred             ---------cccceeEEecceeecccccccCCCCCCccc--ccceeecceeEEecceeeeeccccccccccceeeeccce
Confidence                     368999999 999998764   34677777  556999999999999433211100       01145578


Q ss_pred             EEEEcCCCceEEe-------ccCCCccceeeeEEEcCEEEEEccccC
Q 024009          211 FQFNLNTLKWHVI-------GKLPYRVKTTLAGYWNGWLYFTSGQRD  250 (274)
Q Consensus       211 ~~yd~~~~~W~~~-------~~~p~~~~~~~~~~~~~~l~~~GG~~~  250 (274)
                      -++++.+..|+.+       ..+|.+|.+|+++.++.+||+-.|.++
T Consensus       297 ~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG  343 (830)
T KOG4152|consen  297 ACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG  343 (830)
T ss_pred             eeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence            8999999999876       348999999999999999999998765

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.86  E-value=2e-20  Score=152.22  Aligned_cols=239  Identities=20%  Similarity=0.300  Sum_probs=174.6

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCCCC--CCCCCCeeEEEECCCCCeeeCC-CCCCCCCCceEEEECC-eEEEEcCCCCCCC
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYGPQ--CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRG-RLHVMGGSGENRY   80 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~   80 (274)
                      .+|....+++++++||++||.-...  ..+..+++++|||.+++|..+. ..|+....++++.+++ +||++||.....+
T Consensus        81 ~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if  160 (381)
T COG3055          81 GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF  160 (381)
T ss_pred             cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence            4788999999999999999974332  2456889999999999999986 4566778888888877 9999999753111


Q ss_pred             C---------------------------CCccceEeeeecCCCCCCceeeccCCCCC-CCcceeEEeCCEEEEEccCCCC
Q 024009           81 T---------------------------PEVDHWSLAVKDGKPLEKEWRTEIPIPRG-GPHRACVVVDDRLLVIGGQEGD  132 (274)
Q Consensus        81 ~---------------------------~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~  132 (274)
                      .                           .+-..|+.++..|||++++|+.....|.. +++++++..++++.++-|.-.+
T Consensus       161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKp  240 (381)
T COG3055         161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKP  240 (381)
T ss_pred             hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecC
Confidence            0                           12234666888999999999999877754 4555555667779888875433


Q ss_pred             CCCCCCCCccccccCceeecCceEEeC---CCCCeEecCCCCCCCccc-----eeeEEEeCCEEEEEeccCCCCCC----
Q 024009          133 FMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVLPSMPKPDSHI-----EFAWVLVNNSIVIVGGTTEKHPT----  200 (274)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~l~v~GG~~~~~~~----  200 (274)
                                 ..++     .+++.++   ...+|..+.++|.+....     +...-..++++.+.||.+.....    
T Consensus       241 -----------GLRt-----~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~  304 (381)
T COG3055         241 -----------GLRT-----AEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYK  304 (381)
T ss_pred             -----------Cccc-----cceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHH
Confidence                       2222     3344444   567899999887765432     12224568899999986642110    


Q ss_pred             --------cccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCCCCCCceee
Q 024009          201 --------TKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKV  261 (274)
Q Consensus       201 --------~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~  261 (274)
                              .......++||.+|  +++|+.+++||+++....+...++.||++||+..++.....++.+
T Consensus       305 ~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l  371 (381)
T COG3055         305 NGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL  371 (381)
T ss_pred             hcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence                    00112356899998  889999999999999999999999999999999988766666653

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.78  E-value=8.8e-18  Score=136.87  Aligned_cols=247  Identities=19%  Similarity=0.319  Sum_probs=178.6

Q ss_pred             ceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCC--CCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCCCCCCCcc
Q 024009            9 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET--KKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVD   85 (274)
Q Consensus         9 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~   85 (274)
                      +-+.+.+++.+||--|..+       ...+..|++.  ..|++++.+| .+|.+..+++++++||||||...... ....
T Consensus        39 nG~Ga~ig~~~YVGLGs~G-------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~~  110 (381)
T COG3055          39 NGAGALIGDTVYVGLGSAG-------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSPQ  110 (381)
T ss_pred             ccccceecceEEEEeccCC-------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC-CCce
Confidence            3466777889999988433       4567777776  4799999888 56888888899999999999875544 5567


Q ss_pred             ceEeeeecCCCCCCceeeccC-CCCCCCcceeEEeCC-EEEEEccCCCCCCCC-----------------CCCCcccccc
Q 024009           86 HWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVVVDD-RLLVIGGQEGDFMAK-----------------PGSPIFKCSR  146 (274)
Q Consensus        86 ~~~~~~~~~d~~~~~W~~~~~-~p~~~~~~~~~~~~~-~iyv~GG~~~~~~~~-----------------~~~~~~~~~~  146 (274)
                      .++ ++|.|||.+++|+.+.. .|+...+++++.+++ +||++||......+.                 ..-..+....
T Consensus       111 ~~n-d~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~  189 (381)
T COG3055         111 VFN-DAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA  189 (381)
T ss_pred             Eee-eeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence            776 89999999999999776 677777888888888 899999976443211                 1111222223


Q ss_pred             CceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcC--CCceEE
Q 024009          147 RNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN--TLKWHV  222 (274)
Q Consensus       147 ~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~--~~~W~~  222 (274)
                      .+..+..++..|+ .+++|+.+...|- +++.  ++++..++++.++-|.-....      ....+.+++..  .-+|..
T Consensus       190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGL------Rt~~~k~~~~~~~~~~w~~  261 (381)
T COG3055         190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGL------RTAEVKQADFGGDNLKWLK  261 (381)
T ss_pred             HHhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCc------cccceeEEEeccCceeeee
Confidence            4666788999999 8999999996664 4554  555677888999988766654      34577777765  447999


Q ss_pred             eccCCCccc-------eeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeeeecc
Q 024009          223 IGKLPYRVK-------TTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       223 ~~~~p~~~~-------~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~~~~  272 (274)
                      ++.+|.+..       .+-....++++++.||.+.++.                  ....+|-+.+..|+..-++
T Consensus       262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeL  336 (381)
T COG3055         262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGEL  336 (381)
T ss_pred             ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeeccc
Confidence            888776553       2344455899999999877541                  1234555668889876554

>PF13964 Kelch_6: Kelch motif

Probab=99.46  E-value=2.6e-13  Score=82.22  Aligned_cols=50  Identities=32%  Similarity=0.517  Sum_probs=45.7

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCC
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR   57 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r   57 (274)
                      ||.++++++++++|||+||..+.  ....+++++||+.+++|+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            68999999999999999998775  256899999999999999999999887

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.42  E-value=5.5e-14  Score=119.28  Aligned_cols=179  Identities=17%  Similarity=0.197  Sum_probs=132.3

Q ss_pred             CCCCcCceeeEEeCC--EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECC--eEEEEcCC
Q 024009            3 REMAHSHLGMVTDGR--YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRG--RLHVMGGS   75 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~--~iyv~GG~   75 (274)
                      .|..|.+|.++....  .+|+.||+++.+   .+.++|+|+-..++|..+   ...|-+|++|.++....  +||+.|-+
T Consensus       257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~---~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y  333 (723)
T KOG2437|consen  257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQ---DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRY  333 (723)
T ss_pred             CccccCcceEEEeCCCcEEEEecCcccch---hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhc
Confidence            367899999999965  999999999875   579999999999999987   35788999999998744  99999976


Q ss_pred             CCCCCCCCccceEeeeecCCCCCCceeecc------CCCCCCCcceeEEeCCE--EEEEccCCCCCCCCCCCCccccccC
Q 024009           76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEI------PIPRGGPHRACVVVDDR--LLVIGGQEGDFMAKPGSPIFKCSRR  147 (274)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~------~~p~~~~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~  147 (274)
                      -........ -.+.++..+|..++.|..+.      .-|...+.|.+++..++  |||+||..-.              .
T Consensus       334 ~~sS~r~~~-s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~--------------~  398 (723)
T KOG2437|consen  334 LDSSVRNSK-SLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT--------------C  398 (723)
T ss_pred             ccccccccc-ccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc--------------C
Confidence            432221211 22334555578899998754      24677778899998887  9999997533              2


Q ss_pred             ceeecCceEEeC-CCCCeEecCCC----------CCCCccceeeEEEeCCEEEEEeccCCCCC
Q 024009          148 NEVVYDDVYMLD-DEMKWKVLPSM----------PKPDSHIEFAWVLVNNSIVIVGGTTEKHP  199 (274)
Q Consensus       148 ~~~~~~~~~~~d-~~~~W~~~~~~----------~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  199 (274)
                      .+..+.-+|.|| ....|..+..-          ...|.++.+-++.-++.+|++||......
T Consensus       399 ~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E  461 (723)
T KOG2437|consen  399 NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE  461 (723)
T ss_pred             CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE
Confidence            334467899999 78889776521          22344444555667789999999877654

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.20  E-value=1.3e-11  Score=73.67  Aligned_cols=47  Identities=40%  Similarity=0.700  Sum_probs=42.0

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP   54 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~   54 (274)
                      ||.++++++++++||++||.....  ..++++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence            689999999999999999998732  57899999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=99.17  E-value=1e-10  Score=70.71  Aligned_cols=46  Identities=17%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009          179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV  230 (274)
Q Consensus       179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~  230 (274)
                      ++++..+++|||+||......      .++++++||+++++|+++++||.+|
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGK------YSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCC------ccccEEEEcCCCCcEEECCCCCCCC
Confidence            567999999999999987422      4679999999999999999999886

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.16  E-value=9.9e-11  Score=70.36  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=42.7

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW   65 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~   65 (274)
                      +++|||+||..... ...++++|+||+.+++|++++++|.+|..|+++++
T Consensus         1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            57999999998422 35689999999999999999999999999999863

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.15  E-value=1.5e-10  Score=69.63  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=41.4

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP   54 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~   54 (274)
                      ||.+|++++++++|||+||..........+++++||+.+++|+++++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            6899999999999999999922222356789999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.14  E-value=5.8e-11  Score=101.25  Aligned_cols=183  Identities=18%  Similarity=0.274  Sum_probs=127.9

Q ss_pred             CCCeeeCCC----------CCCCCCCceEEEECC--eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccC---CC
Q 024009           44 TKKWQDLPP----------LPVPRYAPATQLWRG--RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP---IP  108 (274)
Q Consensus        44 ~~~W~~~~~----------~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p  108 (274)
                      +.+|+.+++          -|..|.+|.++...+  -||++||.++.+...+...|+       ..++.|..+..   .|
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~-------v~e~~W~~iN~~t~~P  310 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYS-------VKENQWTCINRDTEGP  310 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhc-------CCcceeEEeecCCCCC
Confidence            457877753          356799999998744  899999998876655555554       67888988543   67


Q ss_pred             CCCCcceeEEeC--CEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecC------CCCCCCcccee
Q 024009          109 RGGPHRACVVVD--DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP------SMPKPDSHIEF  179 (274)
Q Consensus       109 ~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~------~~~~~~~~~~~  179 (274)
                      ..|..|.++..-  .+||++|-+-+...           ++..-...|+|.|| .++.|.-+.      ..|.....  +
T Consensus       311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~-----------r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD--H  377 (723)
T KOG2437|consen  311 GARSCHRMVIDISRRKLYLLGRYLDSSV-----------RNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD--H  377 (723)
T ss_pred             cchhhhhhhhhhhHhHHhhhhhcccccc-----------ccccccccceEEEecCCceeEEecccccccCCcceeec--c
Confidence            777777777654  58999998765522           22223457999999 999998775      23444444  4


Q ss_pred             eEEEeCCE--EEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccC----------CCccceeeeEEE--cCEEEEE
Q 024009          180 AWVLVNNS--IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKL----------PYRVKTTLAGYW--NGWLYFT  245 (274)
Q Consensus       180 ~~~~~~~~--l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~----------p~~~~~~~~~~~--~~~l~~~  245 (274)
                      .+++.+++  |||+||..-.....    ....+|.||+....|+.+..-          -..|-+|++-.+  +.++|+|
T Consensus       378 qM~Vd~~k~~iyVfGGr~~~~~e~----~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~f  453 (723)
T KOG2437|consen  378 QMCVDSEKHMIYVFGGRILTCNEP----QFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVF  453 (723)
T ss_pred             eeeEecCcceEEEecCeeccCCCc----cccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEec
Confidence            55666665  99999975443311    355899999999999876221          244555666555  5799999


Q ss_pred             ccccC
Q 024009          246 SGQRD  250 (274)
Q Consensus       246 GG~~~  250 (274)
                      ||..-
T Consensus       454 ggq~s  458 (723)
T KOG2437|consen  454 GGQRS  458 (723)
T ss_pred             cCccc
Confidence            99654

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.10  E-value=8.7e-11  Score=70.70  Aligned_cols=48  Identities=27%  Similarity=0.521  Sum_probs=31.5

Q ss_pred             CcCceeeEEe-CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC
Q 024009            6 AHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV   55 (274)
Q Consensus         6 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~   55 (274)
                      ||.+|+++.+ +++|||+||.....  ..++++|+||+.+++|++++++|.
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS--
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCCC
Confidence            6899999998 59999999998764  468999999999999999988773

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.02  E-value=9e-10  Score=66.16  Aligned_cols=48  Identities=25%  Similarity=0.474  Sum_probs=41.4

Q ss_pred             CCEEEEEeccCC-CCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE
Q 024009          185 NNSIVIVGGTTE-KHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW  238 (274)
Q Consensus       185 ~~~l~v~GG~~~-~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~  238 (274)
                      +++|||+||... ...      .++++|+||+.+++|++++++|.+|.+|+++++
T Consensus         1 g~~~~vfGG~~~~~~~------~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGT------RLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCC------EecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            579999999883 222      578999999999999999999999999998863

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.96  E-value=1.7e-09  Score=64.35  Aligned_cols=43  Identities=23%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC
Q 024009          179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP  227 (274)
Q Consensus       179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  227 (274)
                      ++++..+++|||+||......      .++++++||+.+++|+++++||
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~------~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQ------PTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSS------BEEEEEEEETTTTEEEEEEEES
T ss_pred             CEEEEECCEEEEEeeecccCc------eeeeEEEEeCCCCEEEEcCCCC
Confidence            678999999999999988333      5779999999999999998886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>smart00612 Kelch Kelch domain

Probab=98.91  E-value=2.6e-09  Score=63.46  Aligned_cols=47  Identities=38%  Similarity=0.604  Sum_probs=40.9

Q ss_pred             EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECC
Q 024009           18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG   67 (274)
Q Consensus        18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~   67 (274)
                      +||++||..+.   ...+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998652   357899999999999999999999999999988764

>PF13854 Kelch_5: Kelch motif

Probab=98.83  E-value=1e-08  Score=59.26  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCC
Q 024009            3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK   45 (274)
Q Consensus         3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~   45 (274)
                      .|.+|.+|++++++++||++||... +.....+++|+||..++
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence            3789999999999999999999985 22356899999998864

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.78  E-value=1e-08  Score=61.58  Aligned_cols=48  Identities=23%  Similarity=0.513  Sum_probs=28.6

Q ss_pred             CCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCC
Q 024009          173 PDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY  228 (274)
Q Consensus       173 ~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~  228 (274)
                      ||..  ++++.. +++|||+||......      .++++++||+++++|++++++|.
T Consensus         1 pR~~--h~~~~~~~~~i~v~GG~~~~~~------~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    1 PRYG--HSAVSIGDNSIYVFGGRDSSGS------PLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             --BS---EEEEE-TTEEEEE--EEE-TE------E---EEEEETTTTEEEE--SS--
T ss_pred             Ccce--EEEEEEeCCeEEEECCCCCCCc------ccCCEEEEECCCCEEEECCCCCC
Confidence            3555  445655 699999999987642      57899999999999999988774

>smart00612 Kelch Kelch domain

Probab=98.74  E-value=1.7e-08  Score=59.90  Aligned_cols=47  Identities=21%  Similarity=0.329  Sum_probs=40.1

Q ss_pred             EEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcC
Q 024009          187 SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG  240 (274)
Q Consensus       187 ~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~  240 (274)
                      +||++||.....       .++++++||+.+++|+.+++||.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQ-------RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCc-------eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            489999986532       36689999999999999999999999999888764

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.68  E-value=5e-08  Score=58.49  Aligned_cols=46  Identities=22%  Similarity=0.398  Sum_probs=35.2

Q ss_pred             CCCCceEEEECCeEEEEcCC---CCCCCCCCccceEeeeecCCCCCCceeeccCCC
Q 024009           56 PRYAPATQLWRGRLHVMGGS---GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP  108 (274)
Q Consensus        56 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p  108 (274)
                      +|..|++++.+++|||+||.   .......       ++..+|+.+++|+.+++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~-------~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSN-------DVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccc-------eeEEEECCCCEEeecCCCC
Confidence            58999999999999999999   2222223       3444558999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.64  E-value=7.6e-06  Score=65.88  Aligned_cols=178  Identities=15%  Similarity=0.223  Sum_probs=105.9

Q ss_pred             eeeEEeCCEEEEEcCcCCC-------------------CCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEE-EECCeE
Q 024009           10 LGMVTDGRYIYVVTGQYGP-------------------QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRL   69 (274)
Q Consensus        10 ~~~~~~~~~iyv~GG~~~~-------------------~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~-~~~~~i   69 (274)
                      |.++...+++.++-..+..                   .+.++...--.||+.+++++.+.-. .-.++.+-+ .-+|++
T Consensus         2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~-td~FCSgg~~L~dG~l   80 (243)
T PF07250_consen    2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQ-TDTFCSGGAFLPDGRL   80 (243)
T ss_pred             eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCC-CCCcccCcCCCCCCCE
Confidence            5666778888888653210                   0112333455899999999887642 222332223 338999


Q ss_pred             EEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc-CCCCCCCcceeEE-eCCEEEEEccCCCCCCCCCCCCccccccC
Q 024009           70 HVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRR  147 (274)
Q Consensus        70 yv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  147 (274)
                      .+.||...  ....+..|+..  . +..+..|.+.. .|...|...++.. -+|+++|+||.....              
T Consensus        81 l~tGG~~~--G~~~ir~~~p~--~-~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t--------------  141 (243)
T PF07250_consen   81 LQTGGDND--GNKAIRIFTPC--T-SDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPT--------------  141 (243)
T ss_pred             EEeCCCCc--cccceEEEecC--C-CCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCc--------------
Confidence            99999754  22445555521  1 11246798865 4777776666554 588999999987431              


Q ss_pred             ceeecCceEEe-CC------CCCeEecCCC--CCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009          148 NEVVYDDVYML-DD------EMKWKVLPSM--PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL  218 (274)
Q Consensus       148 ~~~~~~~~~~~-d~------~~~W~~~~~~--~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~  218 (274)
                              |.| ++      ...|..+...  ..+....-.....-+++||+++..              .-..||++++
T Consensus       142 --------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------------~s~i~d~~~n  199 (243)
T PF07250_consen  142 --------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------------GSIIYDYKTN  199 (243)
T ss_pred             --------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------------CcEEEeCCCC
Confidence                    111 11      1122222211  112222224557778999999864              6778899999


Q ss_pred             ce-EEeccCCCc
Q 024009          219 KW-HVIGKLPYR  229 (274)
Q Consensus       219 ~W-~~~~~~p~~  229 (274)
                      ++ ++++.+|..
T Consensus       200 ~v~~~lP~lPg~  211 (243)
T PF07250_consen  200 TVVRTLPDLPGG  211 (243)
T ss_pred             eEEeeCCCCCCC
Confidence            87 678888854

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=98.61  E-value=2.2e-07  Score=79.32  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEE-CCeEEEEcCCC
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLW-RGRLHVMGGSG   76 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~   76 (274)
                      .++.+++++++++++||+||.+...  ...+.+++||..+++|..-   ...|.+|.+|+++.+ +++|+|+++-.
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~   96 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS   96 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence            4788999999999999999987633  2468999999999999885   477899999999999 67999998654

>PF13854 Kelch_5: Kelch motif

Probab=98.44  E-value=5.4e-07  Score=51.96  Aligned_cols=42  Identities=14%  Similarity=0.131  Sum_probs=33.7

Q ss_pred             CCCccceeeeEEEcCEEEEEccccCCCCCCCCceeecCCeeeeeeccC
Q 024009          226 LPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN  273 (274)
Q Consensus       226 ~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~~~  273 (274)
                      +|.+|..|+++.++++|||+||...   .+..   ..+|+|+++++.|
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~---~~~~---~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG---NNNS---YSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC---CCCC---EECcEEEEECCCC
Confidence            5889999999999999999999874   1111   2489999998764

>PLN02772 guanylate kinase

Probab=98.27  E-value=5.2e-06  Score=71.01  Aligned_cols=67  Identities=16%  Similarity=0.143  Sum_probs=56.1

Q ss_pred             eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCCccceeeeEEE-cCEEEEEccccCC
Q 024009          179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDK  251 (274)
Q Consensus       179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~  251 (274)
                      .+++..++++||+||......      ..+.+++||+.+.+|...   ++.|.+|.+|+++++ +++|+|+++...+
T Consensus        28 ~tav~igdk~yv~GG~~d~~~------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~   98 (398)
T PLN02772         28 ETSVTIGDKTYVIGGNHEGNT------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP   98 (398)
T ss_pred             ceeEEECCEEEEEcccCCCcc------ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence            466899999999999766442      356999999999999863   788999999999999 6899999876554

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.21  E-value=0.00015  Score=58.44  Aligned_cols=112  Identities=15%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             EEEE-cCcCCCCCCCCCCeeEEEECCCCCe-----------eeCCCCCCCCCCceEEEE--CC--eEEEEcCCCCCCC-C
Q 024009           19 IYVV-TGQYGPQCRGPTAHTFVLDTETKKW-----------QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENRY-T   81 (274)
Q Consensus        19 iyv~-GG~~~~~~~~~~~~~~~~d~~~~~W-----------~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~-~   81 (274)
                      .|+| ||++.+.  +..+++++....+.--           +.+..+|.+|++|++.++  .|  ...+|||+...-. .
T Consensus        40 ~YlIHGGrTPNN--ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   40 QYLIHGGRTPNN--ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eEEecCCcCCCc--ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            4655 8877655  3456777766554321           235789999999999987  33  4677999864321 1


Q ss_pred             CCccceEee------eecCCCCCCcee--eccCCCCCCCcceeEEeCCEEEEEccCCCC
Q 024009           82 PEVDHWSLA------VKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGD  132 (274)
Q Consensus        82 ~~~~~~~~~------~~~~d~~~~~W~--~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~  132 (274)
                      .+.+.|+..      +|-.|..-.-.+  .++-+..+...|.+..-++.+|++||+.-.
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~  176 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE  176 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence            233444431      111111111111  122234455556677778999999999754

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.07  E-value=0.00021  Score=57.68  Aligned_cols=138  Identities=15%  Similarity=0.187  Sum_probs=85.0

Q ss_pred             ecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-----CCCCeEe
Q 024009           92 KDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-----DEMKWKV  166 (274)
Q Consensus        92 ~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~~W~~  166 (274)
                      ..||+.+++++.+....-..|...+..-+|++.+.||..+..                   ..+-.|+     .+..|..
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~-------------------~~ir~~~p~~~~~~~~w~e  109 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN-------------------KAIRIFTPCTSDGTCDWTE  109 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc-------------------cceEEEecCCCCCCCCceE
Confidence            355689999998877666677666777899999999986531                   1222333     3567987


Q ss_pred             cC-CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCC-----CceEEec----cCCCccceeeeE
Q 024009          167 LP-SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT-----LKWHVIG----KLPYRVKTTLAG  236 (274)
Q Consensus       167 ~~-~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~-----~~W~~~~----~~p~~~~~~~~~  236 (274)
                      .+ .|-.+|.+.. ....-+++++|+||....           ..+.+....     ..|..+.    ..+.....+...
T Consensus       110 ~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l  177 (243)
T PF07250_consen  110 SPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL  177 (243)
T ss_pred             CcccccCCCcccc-ceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence            76 5788888743 346678999999998622           233333211     1222222    123333344445


Q ss_pred             EEcCEEEEEccccCCCCCCCCceeecCCee
Q 024009          237 YWNGWLYFTSGQRDKGPDDPAPRKVHGDMW  266 (274)
Q Consensus       237 ~~~~~l~~~GG~~~~~~~~~~~~~~~~~~W  266 (274)
                      .-+|+|++++..      ...+++..++.+
T Consensus       178 lPdG~lFi~an~------~s~i~d~~~n~v  201 (243)
T PF07250_consen  178 LPDGNLFIFANR------GSIIYDYKTNTV  201 (243)
T ss_pred             cCCCCEEEEEcC------CcEEEeCCCCeE
Confidence            558999999863      334555445544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.84  E-value=0.005  Score=49.67  Aligned_cols=181  Identities=13%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCC---Cc-eEEEE----CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRY---AP-ATQLW----RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI  105 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~---~~-~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~  105 (274)
                      ..+.+.||.|++|..+|+.+.++.   .+ ....+    +. ++..+...........+++|+       ..+++|+.+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys-------~~~~~Wr~~~   86 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT-------LGSNSWRTIE   86 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE-------eCCCCccccc
Confidence            568999999999999986543211   11 11111    12 333333211111223444554       5788999977


Q ss_pred             CCCCC-CCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCc--cceeeE
Q 024009          106 PIPRG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDS--HIEFAW  181 (274)
Q Consensus       106 ~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~--~~~~~~  181 (274)
                      ..+.. ......+..+|.||-+.-.....              .   ...+..|| .+++|...-++|....  .....+
T Consensus        87 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--------------~---~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L  149 (230)
T TIGR01640        87 CSPPHHPLKSRGVCINGVLYYLAYTLKTN--------------P---DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL  149 (230)
T ss_pred             cCCCCccccCCeEEECCEEEEEEEECCCC--------------C---cEEEEEEEcccceEeeeeecCccccccccceEE
Confidence            43322 11123667899988886432210              0   01588889 8889985223343322  112456


Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEE-cCCCceEEeccCCC---c--cc--eeeeEEEcCEEEEEcc
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN-LNTLKWHVIGKLPY---R--VK--TTLAGYWNGWLYFTSG  247 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd-~~~~~W~~~~~~p~---~--~~--~~~~~~~~~~l~~~GG  247 (274)
                      +..+++|.++........        -+||..+ -.+.+|+..-.++.   .  +.  ....+..+++|++.-.
T Consensus       150 ~~~~G~L~~v~~~~~~~~--------~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       150 INYKGKLAVLKQKKDTNN--------FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             EEECCEEEEEEecCCCCc--------EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            778899988865432110        1677775 33567987633331   1  11  1233445788887754

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.77  E-value=0.0025  Score=54.67  Aligned_cols=133  Identities=21%  Similarity=0.248  Sum_probs=83.7

Q ss_pred             EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeee
Q 024009           13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK   92 (274)
Q Consensus        13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~   92 (274)
                      +..+++|+.++..         ..+.+||..+..-...|.++.+.....++.++++||++..............-.++++
T Consensus        73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence            3359999998542         4478999999988888888877777788888999999987643322111000022233


Q ss_pred             cCC--------CCCCceeeccCCCCCCCc-------ceeEEe-CCEEEE-EccCCCCCCCCCCCCccccccCceeecCce
Q 024009           93 DGK--------PLEKEWRTEIPIPRGGPH-------RACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYDDV  155 (274)
Q Consensus        93 ~~d--------~~~~~W~~~~~~p~~~~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (274)
                      .|+        .....|+.+++.|.....       .+-+++ +..|+| ..+..                      .-.
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------------~GT  201 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------------WGT  201 (342)
T ss_pred             ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------------eEE
Confidence            222        455678888776644322       233455 556887 33321                      137


Q ss_pred             EEeC-CCCCeEecCCCCCCCcc
Q 024009          156 YMLD-DEMKWKVLPSMPKPDSH  176 (274)
Q Consensus       156 ~~~d-~~~~W~~~~~~~~~~~~  176 (274)
                      |.|| .+.+|+...+...|-.+
T Consensus       202 ysfDt~~~~W~~~GdW~LPF~G  223 (342)
T PF07893_consen  202 YSFDTESHEWRKHGDWMLPFHG  223 (342)
T ss_pred             EEEEcCCcceeeccceecCcCC
Confidence            8999 88899999865444433

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.62  E-value=0.0019  Score=52.38  Aligned_cols=86  Identities=10%  Similarity=-0.004  Sum_probs=62.0

Q ss_pred             CCCCcCceeeEEe--CC--EEEEEcCcCCC--CC---------CCCCCeeEEEECCCCCeeeC--CCCCCCCCCceEEEE
Q 024009            3 REMAHSHLGMVTD--GR--YIYVVTGQYGP--QC---------RGPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLW   65 (274)
Q Consensus         3 ~~~~r~~~~~~~~--~~--~iyv~GG~~~~--~~---------~~~~~~~~~~d~~~~~W~~~--~~~~~~r~~~~~~~~   65 (274)
                      .|.+|++|++-++  .+  -+.+|||+..-  .+         .++...+|.+|++-+..+..  +.+....++|.+..-
T Consensus        84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar  163 (337)
T PF03089_consen   84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLAR  163 (337)
T ss_pred             CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEec
Confidence            4789999998877  22  26888998421  11         25677899999998876654  677888899999999


Q ss_pred             CCeEEEEcCCCCCCCCCCccceE
Q 024009           66 RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        66 ~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++.+|++||............|.
T Consensus       164 ~D~VYilGGHsl~sd~Rpp~l~r  186 (337)
T PF03089_consen  164 NDCVYILGGHSLESDSRPPRLYR  186 (337)
T ss_pred             CceEEEEccEEccCCCCCCcEEE
Confidence            99999999975443333344444

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=97.42  E-value=0.0085  Score=48.34  Aligned_cols=149  Identities=16%  Similarity=0.223  Sum_probs=87.9

Q ss_pred             CeeEEEECCCCCeeeCCCCCCC-CCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCC--
Q 024009           35 AHTFVLDTETKKWQDLPPLPVP-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG--  111 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~--  111 (274)
                      ..+.+|+..++.|+.+...+.. ......+.++|.||-+.-.....  .  +   ..+..+|..+.+|+..-++|...  
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--~--~---~~IvsFDl~~E~f~~~i~~P~~~~~  142 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN--P--D---YFIVSFDVSSERFKEFIPLPCGNSD  142 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC--C--c---EEEEEEEcccceEeeeeecCccccc
Confidence            5788999999999998743322 12222677899999887432111  1  0   13555668899999522334322  


Q ss_pred             --CcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC--CCCCeEecCCCCC-----CCccceeeEE
Q 024009          112 --PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK-----PDSHIEFAWV  182 (274)
Q Consensus       112 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~W~~~~~~~~-----~~~~~~~~~~  182 (274)
                        ....++.++|+|.++......             .     .-++|..+  .+..|++.-.++.     -........+
T Consensus       143 ~~~~~~L~~~~G~L~~v~~~~~~-------------~-----~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~  204 (230)
T TIGR01640       143 SVDYLSLINYKGKLAVLKQKKDT-------------N-----NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGF  204 (230)
T ss_pred             cccceEEEEECCEEEEEEecCCC-------------C-----cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEE
Confidence              134567788998887654321             0     14788885  4567987643321     1111123346


Q ss_pred             EeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009          183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL  218 (274)
Q Consensus       183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~  218 (274)
                      ..+++|++.... ...         ..+..||++++
T Consensus       205 ~~~g~I~~~~~~-~~~---------~~~~~y~~~~~  230 (230)
T TIGR01640       205 TDKGEIVLCCED-ENP---------FYIFYYNVGEN  230 (230)
T ss_pred             eeCCEEEEEeCC-CCc---------eEEEEEeccCC
Confidence            677888887653 111         14899998874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.31  E-value=0.58  Score=40.23  Aligned_cols=129  Identities=16%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccc
Q 024009           65 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC  144 (274)
Q Consensus        65 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  144 (274)
                      .+.+|+.++..      ...-+|+       +.+..-...+.++.+.....++.++++||++..........       .
T Consensus        75 ~gskIv~~d~~------~~t~vyD-------t~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~-------~  134 (342)
T PF07893_consen   75 HGSKIVAVDQS------GRTLVYD-------TDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAG-------R  134 (342)
T ss_pred             cCCeEEEEcCC------CCeEEEE-------CCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCcccccc-------C
Confidence            37788888543      2223333       56655555666666555556677899999997654331100       0


Q ss_pred             ccCceeecCceEEeC---------CCCCeEecCCCCCCCccc-----eeeEEEe-CCEEEE-EeccCCCCCCcccccccC
Q 024009          145 SRRNEVVYDDVYMLD---------DEMKWKVLPSMPKPDSHI-----EFAWVLV-NNSIVI-VGGTTEKHPTTKKMVLVG  208 (274)
Q Consensus       145 ~~~~~~~~~~~~~~d---------~~~~W~~~~~~~~~~~~~-----~~~~~~~-~~~l~v-~GG~~~~~~~~~~~~~~~  208 (274)
                      .. ...|  ++..|+         ..-.|+.+|+.|-.....     -.+.+++ +.+|+| +-+..            .
T Consensus       135 ~~-~~~F--E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~  199 (342)
T PF07893_consen  135 PD-FPCF--EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------W  199 (342)
T ss_pred             cc-ceeE--EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------------e
Confidence            00 0011  122221         233689988765444321     1344555 678888 43321            1


Q ss_pred             ceEEEEcCCCceEEecc--CCC
Q 024009          209 EIFQFNLNTLKWHVIGK--LPY  228 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~~--~p~  228 (274)
                      ..|.||+.+.+|+.+++  ||.
T Consensus       200 GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             EEEEEEcCCcceeeccceecCc
Confidence            48999999999999854  453

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.15  E-value=0.21  Score=41.52  Aligned_cols=119  Identities=17%  Similarity=0.142  Sum_probs=65.9

Q ss_pred             EEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCC-CCCCccceEeeeecCCCC
Q 024009           20 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENR-YTPEVDHWSLAVKDGKPL   97 (274)
Q Consensus        20 yv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~d~~   97 (274)
                      ||-|-++..... ....+..||..+.+|.....--... -.++... +++||+.|-..... ....       +-.||..
T Consensus         2 ~VGG~F~~aGsL-~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~-------la~yd~~   72 (281)
T PF12768_consen    2 YVGGSFTSAGSL-PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSN-------LATYDFK   72 (281)
T ss_pred             EEeeecCCCCCc-CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCcee-------EEEEecC
Confidence            444444433321 3578999999999999997641111 1233334 66777777433222 1112       2233477


Q ss_pred             CCceeeccC-----CCCCCCcceeEE---eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEecCC
Q 024009           98 EKEWRTEIP-----IPRGGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS  169 (274)
Q Consensus        98 ~~~W~~~~~-----~p~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~~~  169 (274)
                      +.+|..+..     +|.+..  +...   -..++++.|.. ...                  ..-+..| ...+|..+..
T Consensus        73 ~~~w~~~~~~~s~~ipgpv~--a~~~~~~d~~~~~~aG~~-~~g------------------~~~l~~~-dGs~W~~i~~  130 (281)
T PF12768_consen   73 NQTWSSLGGGSSNSIPGPVT--ALTFISNDGSNFWVAGRS-ANG------------------STFLMKY-DGSSWSSIGS  130 (281)
T ss_pred             CCeeeecCCcccccCCCcEE--EEEeeccCCceEEEecee-cCC------------------CceEEEE-cCCceEeccc
Confidence            899988665     344432  2222   23357777664 221                  2457777 5678988875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.71  E-value=1.3  Score=38.80  Aligned_cols=153  Identities=17%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             eeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCC--------CCCCCceEEEECCeEEEEcCCCCCCC
Q 024009           11 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLP--------VPRYAPATQLWRGRLHVMGGSGENRY   80 (274)
Q Consensus        11 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~--------~~r~~~~~~~~~~~iyv~GG~~~~~~   80 (274)
                      +.++.++++|+...         ...++.+|..+++  |+.-..-.        .++.....+..++++|+.+. +    
T Consensus        64 sPvv~~~~vy~~~~---------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~----  129 (394)
T PRK11138         64 HPAVAYNKVYAADR---------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K----  129 (394)
T ss_pred             ccEEECCEEEEECC---------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C----
Confidence            44677999999853         2468899988764  87642211        11223345566888887542 1    


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                       ..+..++.     +..+..|+...+-+  . ..+-++.++.+|+..+.                       ..++.+| 
T Consensus       130 -g~l~ald~-----~tG~~~W~~~~~~~--~-~ssP~v~~~~v~v~~~~-----------------------g~l~ald~  177 (394)
T PRK11138        130 -GQVYALNA-----EDGEVAWQTKVAGE--A-LSRPVVSDGLVLVHTSN-----------------------GMLQALNE  177 (394)
T ss_pred             -CEEEEEEC-----CCCCCcccccCCCc--e-ecCCEEECCEEEEECCC-----------------------CEEEEEEc
Confidence             12233331     13455687643221  1 12335668888875431                       3578887 


Q ss_pred             CC--CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEE
Q 024009          160 DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHV  222 (274)
Q Consensus       160 ~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~  222 (274)
                      .+  ..|+.-...+........+-++.++.+|+..+             ...++.+|+++.+  |+.
T Consensus       178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-------------~g~v~a~d~~~G~~~W~~  231 (394)
T PRK11138        178 SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-------------NGRVSAVLMEQGQLIWQQ  231 (394)
T ss_pred             cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-------------CCEEEEEEccCChhhhee
Confidence            44  45876544332111101222455677766432             1268888887764  764

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=95.37  E-value=0.91  Score=36.87  Aligned_cols=224  Identities=12%  Similarity=0.126  Sum_probs=91.4

Q ss_pred             CceeeEEeCCEEEEEcCc-CCCCCCCCCCeeEEEEC---CCCCeeeC--CCCCC-------CCCCceEEEECCeEEEEcC
Q 024009            8 SHLGMVTDGRYIYVVTGQ-YGPQCRGPTAHTFVLDT---ETKKWQDL--PPLPV-------PRYAPATQLWRGRLHVMGG   74 (274)
Q Consensus         8 ~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~d~---~~~~W~~~--~~~~~-------~r~~~~~~~~~~~iyv~GG   74 (274)
                      .+.++.+.++++|.+=-. +-..  ..+...+.+|.   ..+.|+.-  +.+|.       ...-|+.+.+++.-|.+|=
T Consensus        76 HCmSMGv~~NRLfa~iEtR~~a~--~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~Gy  153 (367)
T PF12217_consen   76 HCMSMGVVGNRLFAVIETRTVAS--NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGY  153 (367)
T ss_dssp             E-B-EEEETTEEEEEEEEEETTT----EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEE
T ss_pred             eeeeeeeecceeeEEEeehhhhh--hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEe
Confidence            467889999999877321 1111  22445566663   46678552  33332       3456888888888888874


Q ss_pred             CCCCCCCCCccceEeeeecCCCCCCceeeccCC-CCCCCcceeEEeCCEEEEEc-cCCCCCCCCCCCCccccccCceeec
Q 024009           75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI-PRGGPHRACVVVDDRLLVIG-GQEGDFMAKPGSPIFKCSRRNEVVY  152 (274)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~~~  152 (274)
                      ..+.....++-.+.++.---.+..-.=+.++.. .+......+-.++++||+.- |.....                 .-
T Consensus       154 HnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~-----------------~G  216 (367)
T PF12217_consen  154 HNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN-----------------PG  216 (367)
T ss_dssp             EE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS-------------------
T ss_pred             ccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC-----------------Cc
Confidence            332222222332222100000111111222221 12222223446799999984 332210                 01


Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCC-----CCccc---ccccCceEEE-----EcCCC
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKH-----PTTKK---MVLVGEIFQF-----NLNTL  218 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~---~~~~~~i~~y-----d~~~~  218 (274)
                      ..+..-+ ....|..+.-. ....+...-.+..++.||++|-.....     ...+|   .+.-.-+.+.     .+++-
T Consensus       217 S~L~rs~d~G~~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~  295 (367)
T PF12217_consen  217 SSLHRSDDNGQNWSSLRFP-NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDV  295 (367)
T ss_dssp             -EEEEESSTTSS-EEEE-T-T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT-
T ss_pred             ceeeeecccCCchhhcccc-ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccce
Confidence            1223323 45568776532 333333355688999999999654321     11111   0011112222     45555


Q ss_pred             ceEEe-ccCC------CccceeeeEEEcCEEE-EEccccCC
Q 024009          219 KWHVI-GKLP------YRVKTTLAGYWNGWLY-FTSGQRDK  251 (274)
Q Consensus       219 ~W~~~-~~~p------~~~~~~~~~~~~~~l~-~~GG~~~~  251 (274)
                      +|..+ .++-      ....-.++++.++.|| +|||++..
T Consensus       296 ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~~  336 (367)
T PF12217_consen  296 EWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDFF  336 (367)
T ss_dssp             --EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S-
T ss_pred             EEEEeecceeccccccccccceeEEEECCEEEEEecCcccC
Confidence            67666 2222      2223355666688887 88998763

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.32  E-value=0.27  Score=40.88  Aligned_cols=107  Identities=13%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc-----
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK-----  225 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~-----  225 (274)
                      ..+..|| .+.+|..+..--.+.   -..+... +++|++.|-..-...      -...+-.||.++.+|+.+..     
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~---V~~l~~~~~~~Llv~G~ft~~~~------~~~~la~yd~~~~~w~~~~~~~s~~   86 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGT---VTDLQWASNNQLLVGGNFTLNGT------NSSNLATYDFKNQTWSSLGGGSSNS   86 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEE---EEEEEEecCCEEEEEEeeEECCC------CceeEEEEecCCCeeeecCCccccc
Confidence            5677777 899999887652221   1233433 677877775544331      12379999999999988744     


Q ss_pred             CCCccceeeeEEEc-CEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009          226 LPYRVKTTLAGYWN-GWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       226 ~p~~~~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~  271 (274)
                      +|.+.........+ ..+++.|.. ..+......+  ....|+..-+
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEecee-cCCCceEEEE--cCCceEeccc
Confidence            45554333333334 456666655 4333333344  4788876443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.10  E-value=1.4  Score=35.28  Aligned_cols=161  Identities=22%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             eeEEEECCCCC--eeeCCCCCCCCCCce--EEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCC
Q 024009           36 HTFVLDTETKK--WQDLPPLPVPRYAPA--TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG  111 (274)
Q Consensus        36 ~~~~~d~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~  111 (274)
                      .+..+|+.+++  |+.-.  ........  .+..++.+|+..+.      ..+.+++.     +..+..|+...+  ...
T Consensus         4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~~------~~l~~~d~-----~tG~~~W~~~~~--~~~   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASGD------GNLYALDA-----KTGKVLWRFDLP--GPI   68 (238)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEETT------SEEEEEET-----TTSEEEEEEECS--SCG
T ss_pred             EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcCC------CEEEEEEC-----CCCCEEEEeecc--ccc
Confidence            45677776654  66622  11122222  33368888887421      22333331     134445766442  221


Q ss_pred             CcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CC--CCeE-ecCCCCCCCccceeeEEEeCCE
Q 024009          112 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MKWK-VLPSMPKPDSHIEFAWVLVNNS  187 (274)
Q Consensus       112 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~W~-~~~~~~~~~~~~~~~~~~~~~~  187 (274)
                      . ......++.||+....                       ..++.+| .+  ..|+ .....+.............++.
T Consensus        69 ~-~~~~~~~~~v~v~~~~-----------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~  124 (238)
T PF13360_consen   69 S-GAPVVDGGRVYVGTSD-----------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR  124 (238)
T ss_dssp             G-SGEEEETTEEEEEETT-----------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE
T ss_pred             c-ceeeecccccccccce-----------------------eeeEecccCCcceeeeeccccccccccccccCceEecCE
Confidence            1 1247788888887631                       2577787 43  4698 4544333222222344555777


Q ss_pred             EEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCCcc--------ceeeeEEEcCEEEEEccc
Q 024009          188 IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPYRV--------KTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       188 l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~--------~~~~~~~~~~~l~~~GG~  248 (274)
                      +++...             ...++++|+++.+  |+.-...+...        ........++.+|+..+.
T Consensus       125 ~~~~~~-------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  182 (238)
T PF13360_consen  125 LYVGTS-------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD  182 (238)
T ss_dssp             EEEEET-------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred             EEEEec-------------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence            776653             1279999998775  76533332211        123333346788887664

...

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.74  E-value=1.1  Score=39.09  Aligned_cols=148  Identities=18%  Similarity=0.270  Sum_probs=82.2

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCC-ceEEEE-CCe-EEEEcCCCCCCCCCCccceEeeee
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGR-LHVMGGSGENRYTPEVDHWSLAVK   92 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~-~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~   92 (274)
                      .-.+.+.+|+++      .-.+|..|-+++.  .+..+...++- .++.+. +|+ ..+++|...            -+|
T Consensus       224 ~~plllvaG~d~------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk------------y~y  283 (514)
T KOG2055|consen  224 TAPLLLVAGLDG------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK------------YLY  283 (514)
T ss_pred             CCceEEEecCCC------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce------------EEE
Confidence            556888888754      3567888888776  55544433332 112222 554 666666431            134


Q ss_pred             cCCCCCCceeeccCC---CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecC
Q 024009           93 DGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP  168 (274)
Q Consensus        93 ~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~  168 (274)
                      .||..+.+-.++.++   +......--+..++.+.++-|..+.                      ++.+. .++.|-.--
T Consensus       284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~----------------------I~lLhakT~eli~s~  341 (514)
T KOG2055|consen  284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH----------------------IHLLHAKTKELITSF  341 (514)
T ss_pred             EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce----------------------EEeehhhhhhhhhee
Confidence            455677777766653   2111112234556667777776644                      55555 566664433


Q ss_pred             CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009          169 SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW  220 (274)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W  220 (274)
                      .++.....  .+....+.+|++.||+             ..||.+|+.+++-
T Consensus       342 KieG~v~~--~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~  378 (514)
T KOG2055|consen  342 KIEGVVSD--FTFSSDSKELLASGGT-------------GEVYVWNLRQNSC  378 (514)
T ss_pred             eeccEEee--EEEecCCcEEEEEcCC-------------ceEEEEecCCcce
Confidence            33333333  3333444567777764             2699999998853

>cd00094 HX Hemopexin-like repeats

Probab=93.30  E-value=3.2  Score=32.48  Aligned_cols=48  Identities=25%  Similarity=0.514  Sum_probs=29.2

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-----e----ccCCCccceeeeEEE-cCEEEEEccc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-----I----GKLPYRVKTTLAGYW-NGWLYFTSGQ  248 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-----~----~~~p~~~~~~~~~~~-~~~l~~~GG~  248 (274)
                      ++++|++-|.              ..++||..+++...     +    ..+|..  -.++... ++++|+|-|.
T Consensus       110 ~~~~yfFkg~--------------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~  167 (194)
T cd00094         110 NGKTYFFKGD--------------KYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD  167 (194)
T ss_pred             CCEEEEEeCC--------------EEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC
Confidence            6899999774              78899876665421     1    123322  2233334 4899999773

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=93.13  E-value=3.1  Score=36.54  Aligned_cols=84  Identities=15%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             CceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009          153 DDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV  230 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~  230 (274)
                      .-+|.|| ++.+-+++.++-. ........-+..++.++++-|..+            .|+.+..+++.|-.--.++...
T Consensus       280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------------~I~lLhakT~eli~s~KieG~v  347 (514)
T KOG2055|consen  280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------------HIHLLHAKTKELITSFKIEGVV  347 (514)
T ss_pred             eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------------eEEeehhhhhhhhheeeeccEE
Confidence            3478888 8877777765421 111111233566677777777544            7888999999886655566555


Q ss_pred             ceeeeEEEcCEEEEEccc
Q 024009          231 KTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       231 ~~~~~~~~~~~l~~~GG~  248 (274)
                      ...+....+.+|++.||.
T Consensus       348 ~~~~fsSdsk~l~~~~~~  365 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGGT  365 (514)
T ss_pred             eeEEEecCCcEEEEEcCC
Confidence            555555445677777775

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.12  E-value=3.7  Score=33.24  Aligned_cols=48  Identities=29%  Similarity=0.292  Sum_probs=28.1

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC---C--CCCceEEEECCeEEEEc
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV---P--RYAPATQLWRGRLHVMG   73 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~---~--r~~~~~~~~~~~iyv~G   73 (274)
                      ++.+|+...          ....++|+.+++++.+...+.   +  +..-.++--+|+||+--
T Consensus        51 ~g~l~v~~~----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~  103 (246)
T PF08450_consen   51 DGRLYVADS----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD  103 (246)
T ss_dssp             TSEEEEEET----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred             CCEEEEEEc----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence            677777743          334667999999988765421   2  22233333377888853

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=92.57  E-value=7.4  Score=34.84  Aligned_cols=145  Identities=15%  Similarity=0.110  Sum_probs=70.6

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP  112 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~  112 (274)
                      ..+|++|+.+++-+.+...+..-  ...+.. ++ .|++.....+     .     ..+|.+|..+.+.+.+........
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPDG~~La~~~~~~g-----~-----~~Iy~~dl~tg~~~~lt~~~~~~~  309 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGIN--GAPRFSPDGKKLALVLSKDG-----Q-----PEIYVVDIATKALTRITRHRAIDT  309 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCc--CCeeECCCCCEEEEEEeCCC-----C-----eEEEEEECCCCCeEECccCCCCcc
Confidence            57899999888766665543211  122222 34 4555432221     1     123334456666665544322111


Q ss_pred             cceeEEeCC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEE
Q 024009          113 HRACVVVDD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVI  190 (274)
Q Consensus       113 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v  190 (274)
                       .....-++ .|++......                    ..++|.+| .+.+++.+....  ......+ ..-+++.++
T Consensus       310 -~p~wSpDG~~I~f~s~~~g--------------------~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~-~SpDG~~l~  365 (448)
T PRK04792        310 -EPSWHPDGKSLIFTSERGG--------------------KPQIYRVNLASGKVSRLTFEG--EQNLGGS-ITPDGRSMI  365 (448)
T ss_pred             -ceEECCCCCEEEEEECCCC--------------------CceEEEEECCCCCEEEEecCC--CCCcCee-ECCCCCEEE
Confidence             12223344 4555432221                    14788888 677777764211  1111122 233444343


Q ss_pred             EeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          191 VGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       191 ~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      +.......         ..++.+|+.+.+.+.+.
T Consensus       366 ~~~~~~g~---------~~I~~~dl~~g~~~~lt  390 (448)
T PRK04792        366 MVNRTNGK---------FNIARQDLETGAMQVLT  390 (448)
T ss_pred             EEEecCCc---------eEEEEEECCCCCeEEcc
Confidence            43332211         27899999998877663

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.54  E-value=4.1  Score=34.55  Aligned_cols=110  Identities=16%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             ceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCC-eEecCCCCCCCccc
Q 024009          100 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK-WKVLPSMPKPDSHI  177 (274)
Q Consensus       100 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~-W~~~~~~~~~~~~~  177 (274)
                      +.+.+........-.+++.++++|.+.-|.                        .++.|+ ...+ +.....+..+..- 
T Consensus        78 ~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~------------------------~l~v~~l~~~~~l~~~~~~~~~~~i-  132 (321)
T PF03178_consen   78 KLKLIHSTEVKGPVTAICSFNGRLVVAVGN------------------------KLYVYDLDNSKTLLKKAFYDSPFYI-  132 (321)
T ss_dssp             EEEEEEEEEESS-EEEEEEETTEEEEEETT------------------------EEEEEEEETTSSEEEEEEE-BSSSE-
T ss_pred             EEEEEEEEeecCcceEhhhhCCEEEEeecC------------------------EEEEEEccCcccchhhheecceEEE-
Confidence            445444433333335788889997766662                        355555 4444 7777765554432 


Q ss_pred             eeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE-cCEEEEEcc
Q 024009          178 EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW-NGWLYFTSG  247 (274)
Q Consensus       178 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~l~~~GG  247 (274)
                       .++...++.|++.--. ..-          .++.|+.+..+-..++.-+.++...++..+ ++. .++++
T Consensus       133 -~sl~~~~~~I~vgD~~-~sv----------~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~  190 (321)
T PF03178_consen  133 -TSLSVFKNYILVGDAM-KSV----------SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVG  190 (321)
T ss_dssp             -EEEEEETTEEEEEESS-SSE----------EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEE
T ss_pred             -EEEeccccEEEEEEcc-cCE----------EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEE
Confidence             5567778866544322 211          567788877778888777777776666666 554 33433

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=92.40  E-value=7.1  Score=34.19  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             ceEEeC-CC--CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCC
Q 024009          154 DVYMLD-DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPY  228 (274)
Q Consensus       154 ~~~~~d-~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~  228 (274)
                      .++++| .+  ..|+.-.  ...     ...+..+++||+...             ...++++|+++.+  |+.- .+ .
T Consensus       267 ~l~ald~~tG~~~W~~~~--~~~-----~~~~~~~~~vy~~~~-------------~g~l~ald~~tG~~~W~~~-~~-~  324 (394)
T PRK11138        267 NLVALDLRSGQIVWKREY--GSV-----NDFAVDGGRIYLVDQ-------------NDRVYALDTRGGVELWSQS-DL-L  324 (394)
T ss_pred             eEEEEECCCCCEEEeecC--CCc-----cCcEEECCEEEEEcC-------------CCeEEEEECCCCcEEEccc-cc-C
Confidence            477777 43  4586532  111     123667899998752             1279999988764  7541 11 1


Q ss_pred             ccceeeeEEEcCEEEEEc
Q 024009          229 RVKTTLAGYWNGWLYFTS  246 (274)
Q Consensus       229 ~~~~~~~~~~~~~l~~~G  246 (274)
                      .+...+.+..++.||+..
T Consensus       325 ~~~~~sp~v~~g~l~v~~  342 (394)
T PRK11138        325 HRLLTAPVLYNGYLVVGD  342 (394)
T ss_pred             CCcccCCEEECCEEEEEe
Confidence            122233344678887653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=92.38  E-value=7.2  Score=34.23  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=32.8

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      ..+|.+| .+.+++.+.........  . ...-+++.+++.......         ..++.+|+.+..++.+.
T Consensus       302 ~~iy~~d~~~~~~~~l~~~~~~~~~--~-~~spdg~~i~~~~~~~~~---------~~i~~~d~~~~~~~~l~  362 (417)
T TIGR02800       302 PQIYMMDADGGEVRRLTFRGGYNAS--P-SWSPDGDLIAFVHREGGG---------FNIAVMDLDGGGERVLT  362 (417)
T ss_pred             ceEEEEECCCCCEEEeecCCCCccC--e-EECCCCCEEEEEEccCCc---------eEEEEEeCCCCCeEEcc
Confidence            3688887 66666655432211111  1 233355555555443321         27999999887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.32  E-value=5.9  Score=33.05  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=81.9

Q ss_pred             CcCceeeEEeCCEEEEEcCcCC-------CCC-------CCCCCeeEEEECCCCC----eeeCCCCCCCCCCc-eEEE--
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYG-------PQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRYAP-ATQL--   64 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~-------~~~-------~~~~~~~~~~d~~~~~----W~~~~~~~~~r~~~-~~~~--   64 (274)
                      +-.+.++.++++.|| ||||--       ...       .+-.+.++.||.++++    |.+--.-+....+- +-..  
T Consensus        36 GDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYd  114 (339)
T PF09910_consen   36 GDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYD  114 (339)
T ss_pred             CccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeC
Confidence            344566777777666 677721       000       1346789999999887    55543333222221 1112  


Q ss_pred             -ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccc
Q 024009           65 -WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK  143 (274)
Q Consensus        65 -~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  143 (274)
                       ++++|++.=+-. .   .     ++.+|+.|..+.+-+.+...|...   ++...+..++-+  ..-.           
T Consensus       115 P~~D~LLlAR~DG-h---~-----nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~-----------  169 (339)
T PF09910_consen  115 PYEDRLLLARADG-H---A-----NLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH-----------  169 (339)
T ss_pred             CCcCEEEEEecCC-c---c-----eeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccc-----------
Confidence             377788764321 1   1     334555566777777777766664   344555444433  1111           


Q ss_pred             cccCceeecCceEEeC-CCCCe--EecCCC------CCCCccceeeEEEeCCEEEEE
Q 024009          144 CSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV  191 (274)
Q Consensus       144 ~~~~~~~~~~~~~~~d-~~~~W--~~~~~~------~~~~~~~~~~~~~~~~~l~v~  191 (274)
                            .-...+.++| .+.+|  +..+..      +..+... -.++...+++|.+
T Consensus       170 ------~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~-G~~~s~ynR~faF  219 (339)
T PF09910_consen  170 ------KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPEL-GAMASAYNRLFAF  219 (339)
T ss_pred             ------cCCceEEEEEccCCeEEEEecccccCCCCCceEeecc-ccEEEEeeeEEEE
Confidence                  0136789999 88999  333311      1112221 3457777887776

>cd00094 HX Hemopexin-like repeats

Probab=92.25  E-value=4.5  Score=31.60  Aligned_cols=26  Identities=12%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             eEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          180 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       180 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      ++...++++|++-|.              ..++||..+.+
T Consensus       153 a~~~~~~~~yfF~g~--------------~y~~~d~~~~~  178 (194)
T cd00094         153 AFRWLDGYYYFFKGD--------------QYWRFDPRSKE  178 (194)
T ss_pred             eEEeCCCcEEEEECC--------------EEEEEeCccce
Confidence            333444889999764              89999988775

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=91.72  E-value=9  Score=33.93  Aligned_cols=145  Identities=10%  Similarity=0.094  Sum_probs=69.9

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP  112 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~  112 (274)
                      ..++++|+.+++-+.+...+..  ....... ++ +|++.....     ..     ..+|.+|..+.+.+.+...+....
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~-----g~-----~~Iy~~d~~~~~~~~lt~~~~~~~  290 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKD-----GN-----PEIYVMDLASRQLSRVTNHPAIDT  290 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccC-----CC-----ceEEEEECCCCCeEEcccCCCCcC
Confidence            5789999988887776543321  1122222 44 444332111     11     123334466666666544332221


Q ss_pred             cceeEEeCC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeC-CEEE
Q 024009          113 HRACVVVDD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN-NSIV  189 (274)
Q Consensus       113 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~-~~l~  189 (274)
                      . ....-++ +|++.....+                    ...+|.++ .+.+++.+....  ....... ..-+ +.|+
T Consensus       291 ~-~~~spDg~~i~f~s~~~g--------------------~~~iy~~d~~~g~~~~lt~~~--~~~~~~~-~Spdg~~i~  346 (430)
T PRK00178        291 E-PFWGKDGRTLYFTSDRGG--------------------KPQIYKVNVNGGRAERVTFVG--NYNARPR-LSADGKTLV  346 (430)
T ss_pred             C-eEECCCCCEEEEEECCCC--------------------CceEEEEECCCCCEEEeecCC--CCccceE-ECCCCCEEE
Confidence            1 2222344 4555432221                    13688887 666676654221  1111111 2234 4444


Q ss_pred             EEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009          190 IVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK  225 (274)
Q Consensus       190 v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~  225 (274)
                      +.. .....         ..++.+|+.+.+.+.+..
T Consensus       347 ~~~-~~~~~---------~~l~~~dl~tg~~~~lt~  372 (430)
T PRK00178        347 MVH-RQDGN---------FHVAAQDLQRGSVRILTD  372 (430)
T ss_pred             EEE-ccCCc---------eEEEEEECCCCCEEEccC
Confidence            443 22211         169999999988877743

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.64  E-value=2.4  Score=34.77  Aligned_cols=160  Identities=20%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             cCceeeEE-eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCcc
Q 024009            7 HSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVD   85 (274)
Q Consensus         7 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~   85 (274)
                      -+..+... .++.+|.--|.++      .+.+.++|+.+++-....++|..-++-.++.++++||..-=+.     ...-
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f  113 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGF  113 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEE
Confidence            34455555 5788999888765      3788999999999887788888888889999999999985322     1122


Q ss_pred             ceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCe
Q 024009           86 HWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW  164 (274)
Q Consensus        86 ~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W  164 (274)
                      +|+       +  ++.+.+...+-...+=+++..+..|++.-|.                       +.++.+| .+.+-
T Consensus       114 ~yd-------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS-----------------------~~L~~~dP~~f~~  161 (264)
T PF05096_consen  114 VYD-------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGS-----------------------SRLYFLDPETFKE  161 (264)
T ss_dssp             EEE-------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SS-----------------------SEEEEE-TTT-SE
T ss_pred             EEc-------c--ccceEEEEEecCCcceEEEcCCCEEEEECCc-----------------------cceEEECCcccce
Confidence            232       2  2334444433334445778777788888772                       4677776 43322


Q ss_pred             Ee---cCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          165 KV---LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       165 ~~---~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ..   +.....+.... --+-..++.||.-=-            ..+.|.+-||++.+-..
T Consensus       162 ~~~i~V~~~g~pv~~L-NELE~i~G~IyANVW------------~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  162 VRTIQVTDNGRPVSNL-NELEYINGKIYANVW------------QTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             EEEEE-EETTEE---E-EEEEEETTEEEEEET------------TSSEEEEEETTT-BEEE
T ss_pred             EEEEEEEECCEECCCc-EeEEEEcCEEEEEeC------------CCCeEEEEeCCCCeEEE
Confidence            11   11111111110 112334666655322            24589999999998554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.55  E-value=2.9  Score=34.32  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCC
Q 024009          119 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEK  197 (274)
Q Consensus       119 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~  197 (274)
                      .++.+|.--|..+.                    ..+..+| .+++-....++|....  +=+++..+++||.+.-.++ 
T Consensus        54 ~~g~LyESTG~yG~--------------------S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~~d~l~qLTWk~~-  110 (264)
T PF05096_consen   54 DDGTLYESTGLYGQ--------------------SSLRKVDLETGKVLQSVPLPPRYF--GEGITILGDKLYQLTWKEG-  110 (264)
T ss_dssp             ETTEEEEEECSTTE--------------------EEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESSSS-
T ss_pred             CCCEEEEeCCCCCc--------------------EEEEEEECCCCcEEEEEECCcccc--ceeEEEECCEEEEEEecCC-
Confidence            67899999887765                    4567777 7777665566666443  3567899999999976533 


Q ss_pred             CCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccC
Q 024009          198 HPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRD  250 (274)
Q Consensus       198 ~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~  250 (274)
                                 ..++||+++  .+.+...+.+..+-+++.-++.|++.-|...
T Consensus       111 -----------~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~  150 (264)
T PF05096_consen  111 -----------TGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGSSR  150 (264)
T ss_dssp             -----------EEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SSSE
T ss_pred             -----------eEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCccc
Confidence                       789999875  6777777777778888877888888887544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=90.22  E-value=13  Score=33.10  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .++|.+| .+.+.+.+....  ......+...-++.|++..+. ...         ..++.+|+.+.+.+.+.
T Consensus       316 ~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~~~---------~~I~v~d~~~g~~~~Lt  376 (433)
T PRK04922        316 PQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-GGQ---------YRIAVMDLSTGSVRTLT  376 (433)
T ss_pred             ceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-CCc---------eeEEEEECCCCCeEECC
Confidence            3688887 666666654221  111112222223455544332 111         17999999888887664

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=89.80  E-value=8.6  Score=31.48  Aligned_cols=161  Identities=14%  Similarity=0.071  Sum_probs=85.4

Q ss_pred             CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccc
Q 024009           66 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCS  145 (274)
Q Consensus        66 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~  145 (274)
                      .+++|++.+....    .+..|.. ..++ ....+....-.+|.+..+.+.++++|.+|.--..                
T Consensus        30 ~~~iy~~~~~~~~----~v~ey~~-~~~f-~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~----------------   87 (250)
T PF02191_consen   30 SEKIYVTSGFSGN----TVYEYRN-YEDF-LRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN----------------   87 (250)
T ss_pred             CCCEEEECccCCC----EEEEEcC-HhHH-hhcCCCceEEEEeceeccCCeEEECCcEEEEecC----------------
Confidence            4578888775432    2222221 1111 0233444445577777778889999998886442                


Q ss_pred             cCceeecCceEEeC-CCCC---eEecCCCCC-------CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE
Q 024009          146 RRNEVVYDDVYMLD-DEMK---WKVLPSMPK-------PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN  214 (274)
Q Consensus       146 ~~~~~~~~~~~~~d-~~~~---W~~~~~~~~-------~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd  214 (274)
                            +..+..|| .+.+   +..++....       .......-.++-++-|+++=.......       .-.+-+.|
T Consensus        88 ------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-------~ivvskld  154 (250)
T PF02191_consen   88 ------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-------NIVVSKLD  154 (250)
T ss_pred             ------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-------cEEEEeeC
Confidence                  35788888 4443   445542211       011111334556677888755444332       11566677


Q ss_pred             cCCCceEEe--ccCCCccceeeeEEEcCEEEEEccccCCCCCCCCceeec
Q 024009          215 LNTLKWHVI--GKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVH  262 (274)
Q Consensus       215 ~~~~~W~~~--~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~  262 (274)
                      +++-+-++.  ...+... ...+..+-|.||++-........-..+||+.
T Consensus       155 ~~tL~v~~tw~T~~~k~~-~~naFmvCGvLY~~~s~~~~~~~I~yafDt~  203 (250)
T PF02191_consen  155 PETLSVEQTWNTSYPKRS-AGNAFMVCGVLYATDSYDTRDTEIFYAFDTY  203 (250)
T ss_pred             cccCceEEEEEeccCchh-hcceeeEeeEEEEEEECCCCCcEEEEEEECC
Confidence            765543332  2333332 3345556789999977665443333455543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=89.78  E-value=13  Score=32.31  Aligned_cols=151  Identities=19%  Similarity=0.227  Sum_probs=76.7

Q ss_pred             eeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccce
Q 024009           10 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW   87 (274)
Q Consensus        10 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~   87 (274)
                      .+.++.++++|+...         ...++.+|+.+++  |+.--+-.   ...+.+..++.+|+... +     ..+..+
T Consensus        59 ~~p~v~~~~v~v~~~---------~g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~-~-----g~l~al  120 (377)
T TIGR03300        59 LQPAVAGGKVYAADA---------DGTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTE-K-----GEVIAL  120 (377)
T ss_pred             cceEEECCEEEEECC---------CCeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcC-C-----CEEEEE
Confidence            345667888887743         1468999988765  87543221   22233444677776432 1     222333


Q ss_pred             EeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C--CCCe
Q 024009           88 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D--EMKW  164 (274)
Q Consensus        88 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~~~W  164 (274)
                      +.     +..+..|+....-.  . ....+..++.+|+..+.                       ..++.+| .  +..|
T Consensus       121 d~-----~tG~~~W~~~~~~~--~-~~~p~v~~~~v~v~~~~-----------------------g~l~a~d~~tG~~~W  169 (377)
T TIGR03300       121 DA-----EDGKELWRAKLSSE--V-LSPPLVANGLVVVRTND-----------------------GRLTALDAATGERLW  169 (377)
T ss_pred             EC-----CCCcEeeeeccCce--e-ecCCEEECCEEEEECCC-----------------------CeEEEEEcCCCceee
Confidence            31     12344576533211  1 12334567777775431                       3477777 3  3458


Q ss_pred             EecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC--ceEE
Q 024009          165 KVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL--KWHV  222 (274)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~--~W~~  222 (274)
                      +.-...+........+.+..++.+|+ +..            ...++.+|+.+.  .|+.
T Consensus       170 ~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------------~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       170 TYSRVTPALTLRGSASPVIADGGVLV-GFA------------GGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             EEccCCCceeecCCCCCEEECCEEEE-ECC------------CCEEEEEEccCCCEeeee
Confidence            75443322110001223455665543 321            126889998776  4764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=88.65  E-value=15  Score=31.78  Aligned_cols=156  Identities=17%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             CeeEEEECCCCC--eeeCCCCCCC--------CCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeec
Q 024009           35 AHTFVLDTETKK--WQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE  104 (274)
Q Consensus        35 ~~~~~~d~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~  104 (274)
                      ..+..+|+.+++  |+.-...+..        ....+.+..++.+|+....      ..+.+++.     ...+..|+..
T Consensus       200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~-----~tG~~~W~~~  268 (377)
T TIGR03300       200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDL-----RSGRVLWKRD  268 (377)
T ss_pred             CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEEC-----CCCcEEEeec
Confidence            367889988764  7653221211        1123334457788885421      12333331     1234457653


Q ss_pred             cCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CC--CCeEecCCCCCCCccceeeE
Q 024009          105 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MKWKVLPSMPKPDSHIEFAW  181 (274)
Q Consensus       105 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~W~~~~~~~~~~~~~~~~~  181 (274)
                      .  ..   ....+..++.||+....                       ..++.+| .+  ..|+.-. +... ..  .+.
T Consensus       269 ~--~~---~~~p~~~~~~vyv~~~~-----------------------G~l~~~d~~tG~~~W~~~~-~~~~-~~--ssp  316 (377)
T TIGR03300       269 A--SS---YQGPAVDDNRLYVTDAD-----------------------GVVVALDRRSGSELWKNDE-LKYR-QL--TAP  316 (377)
T ss_pred             c--CC---ccCceEeCCEEEEECCC-----------------------CeEEEEECCCCcEEEcccc-ccCC-cc--ccC
Confidence            1  11   12345678888887531                       3577776 33  3576522 1111 11  223


Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEc
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTS  246 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~G  246 (274)
                      +..++.||+.. .            ...++++|+.+.+-..--+++........+..+++||+.+
T Consensus       317 ~i~g~~l~~~~-~------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~  368 (377)
T TIGR03300       317 AVVGGYLVVGD-F------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQT  368 (377)
T ss_pred             EEECCEEEEEe-C------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEe
Confidence            45677777653 1            1268899987775322112222222333455677877554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.79  E-value=15  Score=30.73  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             eeCCCCCCCC-CCceEEEE-CCeEEEEcCCCCC-------C----CCCCccceEeeeecCCCCCCc----eeeccCCCCC
Q 024009           48 QDLPPLPVPR-YAPATQLW-RGRLHVMGGSGEN-------R----YTPEVDHWSLAVKDGKPLEKE----WRTEIPIPRG  110 (274)
Q Consensus        48 ~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~-------~----~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~  110 (274)
                      +.+.+.|..= ..+.++.+ ++.| .|||.-..       .    ...-.++|+ .+-.||..+.+    |+..-..+.-
T Consensus        26 elvG~~P~SGGDTYNAV~~vDd~I-yFGGWVHAPa~y~gk~~g~~~IdF~NKYS-HVH~yd~e~~~VrLLWkesih~~~~  103 (339)
T PF09910_consen   26 ELVGPPPTSGGDTYNAVEWVDDFI-YFGGWVHAPAVYEGKGDGRATIDFRNKYS-HVHEYDTENDSVRLLWKESIHDKTK  103 (339)
T ss_pred             eeccCCCCCCCccceeeeeecceE-EEeeeecCCceeeeccCCceEEEEeeccc-eEEEEEcCCCeEEEEEecccCCccc
Confidence            4566655442 34555555 5555 46774210       0    011122333 34455555554    6664444444


Q ss_pred             CCccee-E---EeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeC
Q 024009          111 GPHRAC-V---VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN  185 (274)
Q Consensus       111 ~~~~~~-~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~  185 (274)
                      .++-.+ .   .++++|++.-+....                   .--+|..| .+..-+.+..-|....     +...+
T Consensus       104 WaGEVSdIlYdP~~D~LLlAR~DGh~-------------------nLGvy~ldr~~g~~~~L~~~ps~KG-----~~~~D  159 (339)
T PF09910_consen  104 WAGEVSDILYDPYEDRLLLARADGHA-------------------NLGVYSLDRRTGKAEKLSSNPSLKG-----TLVHD  159 (339)
T ss_pred             cccchhheeeCCCcCEEEEEecCCcc-------------------eeeeEEEcccCCceeeccCCCCcCc-----eEeee
Confidence            333222 1   246788887654322                   13577777 7777777766665532     13333


Q ss_pred             CEEEEEeccCCCCCCcccccccCceEEEEcCCCce--EEec------cCC-CccceeeeEEEcCEEEEE
Q 024009          186 NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW--HVIG------KLP-YRVKTTLAGYWNGWLYFT  245 (274)
Q Consensus       186 ~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W--~~~~------~~p-~~~~~~~~~~~~~~l~~~  245 (274)
                      ...|-+  ......       ++.|.+||+.+++|  +...      .-+ ..+....+++..++++.|
T Consensus       160 ~a~F~i--~~~~~g-------~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF  219 (339)
T PF09910_consen  160 YACFGI--NNFHKG-------VSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF  219 (339)
T ss_pred             eEEEec--cccccC-------CceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence            333322  222221       55899999999999  3321      112 223356667777888866

>PRK05137 tolB translocation protein TolB; Provisional

Probab=87.40  E-value=20  Score=31.82  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=15.8

Q ss_pred             CeeEEEECCCCCeeeCCCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLP   54 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~   54 (274)
                      ..++++|+.+++...+...+
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~  245 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFP  245 (435)
T ss_pred             CEEEEEECCCCcEEEeecCC
Confidence            67899999998887776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=85.78  E-value=25  Score=31.26  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=31.7

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .++|.+| .+..-+.+...+.....  .. ..-+++-+++......         ...+|.+|+.+.+.+++.
T Consensus       270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~--~~-~spDG~~i~f~s~~~g---------~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        270 TDIYTMDLRSGTTTRLTDSPAIDTS--PS-YSPDGSQIVFESDRSG---------SPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             ceEEEEECCCCceEEccCCCCccCc--ee-EcCCCCEEEEEECCCC---------CCeEEEEECCCCCeEEee
Confidence            4788888 66666666543322111  22 2234443333321111         127899998887777663

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=85.32  E-value=10  Score=27.30  Aligned_cols=84  Identities=12%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCC---CCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe
Q 024009           13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL   89 (274)
Q Consensus        13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~   89 (274)
                      +.++|.+|-+.-...    .....+-.||..+.+|+.+..   .........++.++|+|.++.-..... ...++.|-+
T Consensus         2 icinGvly~~a~~~~----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL   76 (129)
T PF08268_consen    2 ICINGVLYWLAWSED----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL   76 (129)
T ss_pred             EEECcEEEeEEEECC----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence            346777877765411    235788999999999988854   234466788888899998876433221 234566654


Q ss_pred             eeecCCCCCCceeecc
Q 024009           90 AVKDGKPLEKEWRTEI  105 (274)
Q Consensus        90 ~~~~~d~~~~~W~~~~  105 (274)
                      +    |..+.+|.+..
T Consensus        77 e----D~~k~~Wsk~~   88 (129)
T PF08268_consen   77 E----DYEKQEWSKKH   88 (129)
T ss_pred             e----ccccceEEEEE
Confidence            3    34568898753

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=85.29  E-value=19  Score=30.86  Aligned_cols=151  Identities=14%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             CCeeEEEECCCCC--eeeCCC--CCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceee---c
Q 024009           34 TAHTFVLDTETKK--WQDLPP--LPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT---E  104 (274)
Q Consensus        34 ~~~~~~~d~~~~~--W~~~~~--~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~---~  104 (274)
                      ...+++|+.....  ......  +|..-.-..+++.  +..+||..-..     ..+.+|+.     +..+.+++.   +
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~-----~~~~g~~~~~~~~  234 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDY-----DPSDGSLTEIQTI  234 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEE-----ETTTTEEEEEEEE
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEee-----cccCCceeEEEEe
Confidence            3678888887665  655332  2332333344444  34788886432     44555543     233444443   3


Q ss_pred             cCCCCCC----CcceeEEe-CC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCC-CCcc
Q 024009          105 IPIPRGG----PHRACVVV-DD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSH  176 (274)
Q Consensus       105 ~~~p~~~----~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~  176 (274)
                      +.+|...    ..+.+... ++ .||+.....+.                    ..+|..| .+.+.+.+...+. +..-
T Consensus       235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--------------------I~vf~~d~~~g~l~~~~~~~~~G~~P  294 (345)
T PF10282_consen  235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS--------------------ISVFDLDPATGTLTLVQTVPTGGKFP  294 (345)
T ss_dssp             ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE--------------------EEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred             eeccccccccCCceeEEEecCCCEEEEEeccCCE--------------------EEEEEEecCCCceEEEEEEeCCCCCc
Confidence            4443321    12223333 34 47776433211                    2455554 4555555543332 1111


Q ss_pred             ceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       177 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .++++...++.||+. .......         .++..|.++..++.+.
T Consensus       295 r~~~~s~~g~~l~Va-~~~s~~v---------~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  295 RHFAFSPDGRYLYVA-NQDSNTV---------SVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEEEE-TTSSEEEEE-ETTTTEE---------EEEEEETTTTEEEEEE
T ss_pred             cEEEEeCCCCEEEEE-ecCCCeE---------EEEEEeCCCCcEEEec
Confidence            113222234445554 3333221         4555577888898764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=84.86  E-value=22  Score=30.94  Aligned_cols=104  Identities=10%  Similarity=0.145  Sum_probs=55.3

Q ss_pred             CCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEecCC-----CCC
Q 024009           98 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS-----MPK  172 (274)
Q Consensus        98 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~~~-----~~~  172 (274)
                      .+.|+.+......  .--++.++|++|.+.-.                       .+++..+...+-+++.+     +..
T Consensus       189 ~~~Wt~l~~~~~~--~~DIi~~kGkfYAvD~~-----------------------G~l~~i~~~l~i~~v~~~i~~~~~~  243 (373)
T PLN03215        189 GNVLKALKQMGYH--FSDIIVHKGQTYALDSI-----------------------GIVYWINSDLEFSRFGTSLDENITD  243 (373)
T ss_pred             CCeeeEccCCCce--eeEEEEECCEEEEEcCC-----------------------CeEEEEecCCceeeecceecccccC
Confidence            4789988642222  23678899999998321                       23455431111112221     111


Q ss_pred             CCccceeeEEEeCCEEEEEeccCCCCCC--------cccccccCceEEEEcCCCceEEeccCC
Q 024009          173 PDSHIEFAWVLVNNSIVIVGGTTEKHPT--------TKKMVLVGEIFQFNLNTLKWHVIGKLP  227 (274)
Q Consensus       173 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~--------~~~~~~~~~i~~yd~~~~~W~~~~~~p  227 (274)
                      +......-.+...|+|+++.........        ..+. .-=.|++.|.+..+|.++..|.
T Consensus       244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t-~~f~VfklD~~~~~WveV~sLg  305 (373)
T PLN03215        244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRT-VGFKVYKFDDELAKWMEVKTLG  305 (373)
T ss_pred             CcccCceeEEEECCEEEEEEEEccCcccccccccccccce-eEEEEEEEcCCCCcEEEecccC
Confidence            1111113356778889999875322110        0000 0115677798899999997775

>PRK04043 tolB translocation protein TolB; Provisional

Probab=83.12  E-value=33  Score=30.48  Aligned_cols=151  Identities=10%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP  112 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~  112 (274)
                      .++|++|+.+++=+.+...+..  ....... ++ +|.+.-...     .     +..+|.+|..+..++.+...+....
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~--~~~~~~SPDG~~la~~~~~~-----g-----~~~Iy~~dl~~g~~~~LT~~~~~d~  280 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGM--LVVSDVSKDGSKLLLTMAPK-----G-----QPDIYLYDTNTKTLTQITNYPGIDV  280 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCc--EEeeEECCCCCEEEEEEccC-----C-----CcEEEEEECCCCcEEEcccCCCccC
Confidence            5899999988876666542211  1111121 44 555443221     1     1234444466777777766554222


Q ss_pred             cceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009          113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIV  191 (274)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~  191 (274)
                      ......-+.+|++.....+.                    .++|.+| .+.+.+++.....  ..  .. ..-+++.+++
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g~--------------------~~Iy~~dl~~g~~~rlt~~g~--~~--~~-~SPDG~~Ia~  335 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLGY--------------------PNIFMKKLNSGSVEQVVFHGK--NN--SS-VSTYKNYIVY  335 (419)
T ss_pred             ccEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCeEeCccCCC--cC--ce-ECCCCCEEEE
Confidence            22222234467776543221                    4788888 6666655543211  11  22 3334443343


Q ss_pred             eccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009          192 GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK  225 (274)
Q Consensus       192 GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~  225 (274)
                      -..........   -...++.+|+.+..++.+..
T Consensus       336 ~~~~~~~~~~~---~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        336 SSRETNNEFGK---NTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             EEcCCCcccCC---CCcEEEEEECCCCCeEECCC
Confidence            33322111000   02379999999999988754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=82.92  E-value=31  Score=29.93  Aligned_cols=153  Identities=16%  Similarity=0.205  Sum_probs=78.6

Q ss_pred             EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEee
Q 024009           13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA   90 (274)
Q Consensus        13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~   90 (274)
                      +..++++|+...         --.++.+|+.+.+  |+.....-......-....+++||+-....      ...+++. 
T Consensus        65 ~~~dg~v~~~~~---------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g------~~y~ld~-  128 (370)
T COG1520          65 ADGDGTVYVGTR---------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG------KLYALDA-  128 (370)
T ss_pred             EeeCCeEEEecC---------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc------eEEEEEC-
Confidence            566888888711         1268999999987  866543201111111222267776643222      1222221 


Q ss_pred             eecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC---CCCCeEec
Q 024009           91 VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVL  167 (274)
Q Consensus        91 ~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~  167 (274)
                          +.-+..|+...+.. .......+..++.+|+.. .+                      ..++.+|   .+..|+.-
T Consensus       129 ----~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s-~~----------------------g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         129 ----STGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT-DD----------------------GHLYALNADTGTLKWTYE  180 (370)
T ss_pred             ----CCCcEEEEEecCCC-eEEecCcEEcCcEEEEec-CC----------------------CeEEEEEccCCcEEEEEe
Confidence                12566787754442 333334556667777764 11                      3467776   34568744


Q ss_pred             CCCC-CCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC--ceEE
Q 024009          168 PSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL--KWHV  222 (274)
Q Consensus       168 ~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~--~W~~  222 (274)
                      .+.+ ..+..  ...+..++.+|+.... . .         ..++.+|+.+.  .|+.
T Consensus       181 ~~~~~~~~~~--~~~~~~~~~vy~~~~~-~-~---------~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         181 TPAPLSLSIY--GSPAIASGTVYVGSDG-Y-D---------GILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cCCccccccc--cCceeecceEEEecCC-C-c---------ceEEEEEccCCcEeeee
Confidence            4332 22222  1223556666665322 1 1         16899998766  4764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=81.47  E-value=40  Score=30.24  Aligned_cols=59  Identities=14%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCC-EEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .++|.+| .+.+.+.+.........  .+ ..-++ .|++.....+          ...+|.+|+++.+++++.
T Consensus       286 ~~Iy~~dl~tg~~~~lt~~~~~~~~--p~-wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        286 PEIYVVDIATKALTRITRHRAIDTE--PS-WHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             eEEEEEECCCCCeEECccCCCCccc--eE-ECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEe
Confidence            4788888 77777766543221111  22 22344 4444432211          127999999999888773

>PRK03629 tolB translocation protein TolB; Provisional

Probab=81.28  E-value=39  Score=30.05  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=31.9

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK  225 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~  225 (274)
                      ..+|.+| .+..-+.+........   .....-+++.+++.......         ..++.+|+.+.+++.+..
T Consensus       311 ~~Iy~~d~~~g~~~~lt~~~~~~~---~~~~SpDG~~Ia~~~~~~g~---------~~I~~~dl~~g~~~~Lt~  372 (429)
T PRK03629        311 PQVYKVNINGGAPQRITWEGSQNQ---DADVSSDGKFMVMVSSNGGQ---------QHIAKQDLATGGVQVLTD  372 (429)
T ss_pred             ceEEEEECCCCCeEEeecCCCCcc---CEEECCCCCEEEEEEccCCC---------ceEEEEECCCCCeEEeCC
Confidence            3678777 5555554432211111   11223345444443332221         279999999999887753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=81.27  E-value=39  Score=30.04  Aligned_cols=59  Identities=10%  Similarity=0.103  Sum_probs=31.4

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCE-EEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNS-IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .++|.+| .+.+-+.+.........  .+ ..-+++ |++.....+          ...+|.+|+.+.+.+++.
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~~~~--~~-~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGIDTE--PT-WAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLT  332 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCCccc--eE-ECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEee
Confidence            4788888 66665555433221111  22 223444 444322211          127999999888887763

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=80.75  E-value=30  Score=28.43  Aligned_cols=209  Identities=17%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             eEEeCCEEEE---EcCcCCCCCCCCCCeeEEEECCC-CCeeeC---CCC----CC-CCCCceEEEECCeEEEEcCC--CC
Q 024009           12 MVTDGRYIYV---VTGQYGPQCRGPTAHTFVLDTET-KKWQDL---PPL----PV-PRYAPATQLWRGRLHVMGGS--GE   77 (274)
Q Consensus        12 ~~~~~~~iyv---~GG~~~~~~~~~~~~~~~~d~~~-~~W~~~---~~~----~~-~r~~~~~~~~~~~iyv~GG~--~~   77 (274)
                      +.+.++.||.   .|=+-+.   +.+.-.|+=.... ++|+.-   .++    |. .-+++++-+++++||.+=-.  -.
T Consensus        21 aFVy~~VIYAPfM~~~RHGv---~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a   97 (367)
T PF12217_consen   21 AFVYDNVIYAPFMAGDRHGV---DNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA   97 (367)
T ss_dssp             -EEETTEEEEEEEEESSSSS---TT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT
T ss_pred             ceeecCeeecccccccccCc---cceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh
Confidence            4566777753   3333332   3355556555554 468652   222    22 23567788899999986431  11


Q ss_pred             CCCCCCccceEeeeecCCCCCCceee--ccCCCC-------CCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCc
Q 024009           78 NRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPR-------GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN  148 (274)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~-------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~  148 (274)
                      .......+.|+-.++    ..+.|+.  ++..|.       ...-|+.+++++.=|-+|=+.++...          +. 
T Consensus        98 ~~km~~~~Lw~RpMF----~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sP----------Re-  162 (367)
T PF12217_consen   98 SNKMVRAELWSRPMF----HDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSP----------RE-  162 (367)
T ss_dssp             T--EEEEEEEEEE-S----TTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-----------E-
T ss_pred             hhhhhhhhhhccccc----ccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCc----------ce-
Confidence            122234555665443    4667765  555554       23346788888887888866554221          00 


Q ss_pred             eeecCceEEeC--CC-CC--eEecCCCCCCCccceeeEEEeCCEEEEEe-ccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          149 EVVYDDVYMLD--DE-MK--WKVLPSMPKPDSHIEFAWVLVNNSIVIVG-GTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       149 ~~~~~~~~~~d--~~-~~--W~~~~~~~~~~~~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                         ..-+|.-+  .+ ..  =++++.. ..+...+.++-..++.||+.. |......       -..+.+-+..-..|+.
T Consensus       163 ---~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~~-------GS~L~rs~d~G~~w~s  231 (367)
T PF12217_consen  163 ---LGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTNP-------GSSLHRSDDNGQNWSS  231 (367)
T ss_dssp             ---EEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS----------EEEEESSTTSS-EE
T ss_pred             ---eeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCCC-------cceeeeecccCCchhh
Confidence               11122222  11 11  1233322 333333456778899999975 3333221       2367777778888987


Q ss_pred             eccCCCccc--eeeeEEEcCEEEEEccccC
Q 024009          223 IGKLPYRVK--TTLAGYWNGWLYFTSGQRD  250 (274)
Q Consensus       223 ~~~~p~~~~--~~~~~~~~~~l~~~GG~~~  250 (274)
                      + .+|....  ..-.+..++.||+||-+..
T Consensus       232 l-rfp~nvHhtnlPFakvgD~l~mFgsERA  260 (367)
T PF12217_consen  232 L-RFPNNVHHTNLPFAKVGDVLYMFGSERA  260 (367)
T ss_dssp             E-E-TT---SS---EEEETTEEEEEEE-SS
T ss_pred             c-cccccccccCCCceeeCCEEEEEecccc
Confidence            6 3333322  2334556999999997654

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>smart00284 OLF Olfactomedin-like domains

Probab=80.07  E-value=32  Score=28.27  Aligned_cols=137  Identities=18%  Similarity=0.162  Sum_probs=71.5

Q ss_pred             CCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCC--
Q 024009           98 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD--  174 (274)
Q Consensus        98 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~--  174 (274)
                      ..++...-.+|.+..+.+.++++|.+|.--..+                      ..+..|| .+.+-.....+|.+.  
T Consensus        61 ~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s----------------------~~iiKydL~t~~v~~~~~Lp~a~y~  118 (255)
T smart00284       61 MGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNS----------------------HDICRFDLTTETYQKEPLLNGAGYN  118 (255)
T ss_pred             ccCCceEEECCCccccccEEEECceEEEEecCC----------------------ccEEEEECCCCcEEEEEecCccccc
Confidence            334444445788888889999999999854322                      4688888 555443333333221  


Q ss_pred             --------ccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc-eeeeEEEcCEEEEE
Q 024009          175 --------SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK-TTLAGYWNGWLYFT  245 (274)
Q Consensus       175 --------~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~-~~~~~~~~~~l~~~  245 (274)
                              .....-.++-++-|+++=.......       .=.|-+.|+.+-.-++.=..+.++. ..-+..+-|.||++
T Consensus       119 ~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-------~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~  191 (255)
T smart00284      119 NRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-------KIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVT  191 (255)
T ss_pred             cccccccCCCccEEEEEcCCceEEEEeccCCCC-------CEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEE
Confidence                    1111233555666777633322211       0045677776665444322233332 23455556899998


Q ss_pred             ccccCCCCCCCCceeecC
Q 024009          246 SGQRDKGPDDPAPRKVHG  263 (274)
Q Consensus       246 GG~~~~~~~~~~~~~~~~  263 (274)
                      -.......+-..+||+.+
T Consensus       192 ~s~~~~~~~I~yayDt~t  209 (255)
T smart00284      192 RSLGSKGEKVFYAYDTNT  209 (255)
T ss_pred             ccCCCCCcEEEEEEECCC
Confidence            543333333334555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		2e-06
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		1e-04

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 104/273 (38%), Gaps = 37/273 (13%)
Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT---AHTFVLDTETKKWQDLPPLPVPR 57
           +  ++  +H  +VT    +YVV G Y  +        ++ F LD  + +W  LPPLP  R
Sbjct: 41  LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100
Query: 58  YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
                     +++V+ G        E    S+   D  P+  +W     +P        +
Sbjct: 101 CLFGLGEVDDKIYVVAG---KDLQTEASLDSVLCYD--PVAAKWSEVKNLPIKVYGHNVI 155
Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 176
             +  +  +GG+  D          KC+ R       V++ +  +  WK L  M  P S 
Sbjct: 156 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 199
Query: 177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG 236
             F   +    IVI GG TE         L   +  F+L T KW V+ + P    +    
Sbjct: 200 --FGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMTEFPQERSSISLV 250
Query: 237 YWNGWLYFTSG--QRDKGPDDPAPRKVHGDMWR 267
              G LY   G         + AP +V+ D+W+
Sbjct: 251 SLAGSLYAIGGFAMIQLESKEFAPTEVN-DIWK 282

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 28/186 (15%)
Query: 41  DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 100
           DT T+ W   P +   R +       G ++V GGS  N  +  V + S  V D  P  + 
Sbjct: 124 DTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN-SCEVYD--PATET 180
Query: 101 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 160
           W    P+     +   V V D++  +GGQ G                + V Y D+ +   
Sbjct: 181 WTELCPMIEARKNHGLVFVKDKIFAVGGQNG------------LGGLDNVEYYDIKL--- 225
Query: 161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW 220
             +WK++  MP         W  V      VG         + +  +G I ++N  T KW
Sbjct: 226 -NEWKMVSPMP---------WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Query: 221 HVIGKL 226
               K+
Sbjct: 276 VANSKV 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	7e-29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-18
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-13
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	7e-21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	4e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	5e-20
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	7e-18
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-13
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	6e-11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-18
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-10
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-11
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-12
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-15
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	5e-05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	6e-04

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  111 bits (279), Expect = 7e-29
 Identities = 56/293 (19%), Positives = 90/293 (30%), Gaps = 55/293 (18%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT--FVLDTETKKWQDL-PPLPVPR 57
            P            DG  +YV  G                  + +T  W  L    P+  
Sbjct: 51  FPGGPRDQATSAFIDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGM 109

Query: 58  YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK------------------ 99
               T +  G+ +V GG  +N +    +  + A KD   ++K                  
Sbjct: 110 AGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKF 169

Query: 100 ---------EWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNE 149
                    +W      P  G   A VV   D+  +I G+     AKPG       R + 
Sbjct: 170 LLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE-----AKPG------LRTDA 218

Query: 150 VVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVG-----GTTEKHPTTKKM 204
           V   ++    + +KW  L  +  PD        + N+S++  G     G+ E +   K  
Sbjct: 219 V--FELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNY 276

Query: 205 VLVGEIFQ-----FNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKG 252
              G            +  KW   G+L       ++  WN  L    G+   G
Sbjct: 277 AHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGG 329

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 48/278 (17%), Positives = 78/278 (28%), Gaps = 58/278 (20%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYA 59
            P            D   +Y+  G       G   +      + KKW  L   P  PR  
Sbjct: 6   TPVPF--KSGTGAIDNDTVYIGLG-----SAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ 58

Query: 60  PATQLWRGRLHVMGGSGEN------------RYTPEVDHWSLAVKDGKPLEKEWRTEIPI 107
             +    G L+V GG G+N            +Y P+ + W            +  +  P+
Sbjct: 59  ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV-----------KLMSHAPM 107

Query: 108 PRGGPHRACVVVDDRLLVIGGQEGD-----------------FMAKPGSPIFKCSRRNEV 150
              G      V + +  V GG   +                  + K  +  F     +  
Sbjct: 108 GMAGH--VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF 165

Query: 151 VYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGE 209
               +   D    +W      P   +    A V   +   ++ G  +    T  +     
Sbjct: 166 FNKFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNKGDKTWLINGEAKPGLRTDAV----F 220

Query: 210 IFQFNLNTLKWHVIGKLPY--RVKTTLAGYWNGWLYFT 245
              F  N LKW+ +  +     V    AG  N  L F 
Sbjct: 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFA 258

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 73.1 bits (179), Expect = 5e-15
 Identities = 39/239 (16%), Positives = 66/239 (27%), Gaps = 54/239 (22%)

Query: 50  LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 109
           LP  PVP  +    +    +++  GS           + L   D +  +K+W      P 
Sbjct: 3   LPETPVPFKSGTGAIDNDTVYIGLGSAGT------AWYKL---DTQAKDKKWTALAAFP- 52

Query: 110 GGP--HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 166
           GGP        +D  L V GG   +            S     V++DV+  +     W  
Sbjct: 53  GGPRDQATSAFIDGNLYVFGGIGKN------------SEGLTQVFNDVHKYNPKTNSWVK 100

Query: 167 LPSMPKPDSHIEFAWVLVNNSIVIVGG------------------TTEKHPTTKKMVLVG 208
           L S   P         + N    + GG                   +             
Sbjct: 101 LMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDK 159

Query: 209 ---------EIFQFNLNTLKWHVIGKLPY-RVKTTLAGYWNGWLYFTSGQRDKGPDDPA 257
                     +  F+ +T +W   G+ P+               +  +G+   G    A
Sbjct: 160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDA 218

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 26/192 (13%), Positives = 50/192 (26%), Gaps = 37/192 (19%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP--RY 58
            P     +   +V  G   +++ G+  P  R              KW  L P+  P    
Sbjct: 186 SPWY-GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244

Query: 59  APATQLWRGRLHVMGGSGEN------------RYTPEVDHWSLAVKDGKPLEKEWR--TE 104
                +    L   GG+G               +      +S  +        +W    E
Sbjct: 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL--WHNGKWDKSGE 302

Query: 105 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW 164
           +   R       +  ++ LL+IGG                         D  ++  +   
Sbjct: 303 LSQGRAYG--VSLPWNNSLLIIGG----------------ETAGGKAVTDSVLITVKDNK 344

Query: 165 KVLPSMPKPDSH 176
             + ++     H
Sbjct: 345 VTVQNLEHHHHH 356

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 88.9 bits (221), Expect = 7e-21
 Identities = 35/232 (15%), Positives = 68/232 (29%), Gaps = 51/232 (21%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
             + +G+     +IY V G +G             + E  +W  + P+   R      + 
Sbjct: 111 PRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167

Query: 66  RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 118
              L+ +GG            Y PE + W +             T +   R G      V
Sbjct: 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM------------ITAMNTIRSGA--GVCV 213

Query: 119 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHI 177
           + + +   GG +G              + N V  YD      +   W  +  M       
Sbjct: 214 LHNCIYAAGGYDG------------QDQLNSVERYD-----VETETWTFVAPMKHR--RS 254

Query: 178 EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR 229
                +    I ++GG             +  +  ++ +T  W  + ++   
Sbjct: 255 ALGITVHQGRIYVLGGYDGHTF-------LDSVECYDPDTDTWSEVTRMTSG 299

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 48/281 (17%), Positives = 83/281 (29%), Gaps = 85/281 (30%)

Query: 13  VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVM 72
              GR IY   G +        ++    +     W  L  L VPR   A  +  G L+ +
Sbjct: 21  PKVGRLIYTAGGYFR----QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAV 76

Query: 73  GGSGEN-----------RYTPEVDHWS-------------LAVKDGK------------- 95
           GG   +            Y P  + WS             + V DG              
Sbjct: 77  GGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH 136

Query: 96  -------PLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR 146
                  P   EW     +   R G      V++  L  +GG +G             +R
Sbjct: 137 NSVERYEPERDEWHLVAPMLTRRIGV--GVAVLNRLLYAVGGFDGT------------NR 182

Query: 147 RNEV-VYD---DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK 202
            N    Y    +        +W+++ +M    S       +++N I   GG   +     
Sbjct: 183 LNSAECYYPERN--------EWRMITAMNTIRSG--AGVCVLHNCIYAAGGYDGQDQLN- 231

Query: 203 KMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLY 243
                  + ++++ T  W  +  + +R          G +Y
Sbjct: 232 ------SVERYDVETETWTFVAPMKHRRSALGITVHQGRIY 266

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 22/144 (15%), Positives = 36/144 (25%), Gaps = 25/144 (17%)

Query: 100 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 159
              +   +PR         V   +   GG              +     E  Y+      
Sbjct: 7   HHHSSGLVPR---GSHAPKVGRLIYTAGGYFR-----------QSLSYLE-AYNPS---- 47

Query: 160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK 219
               W  L  +  P S    A  +V   +  VGG             +     +N  T +
Sbjct: 48  -NGTWLRLADLQVPRSG--LAGCVVGGLLYAVGGRNNSPDGNTDSSAL---DCYNPMTNQ 101

Query: 220 WHVIGKLPYRVKTTLAGYWNGWLY 243
           W     +         G  +G +Y
Sbjct: 102 WSPCAPMSVPRNRIGVGVIDGHIY 125

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 87.0 bits (216), Expect = 4e-20
 Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 51/232 (21%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
                G  T G  IYV  G  G             D    +W  L  +   R      + 
Sbjct: 102 RRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA 158

Query: 66  RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 118
            G ++ +GG           +Y P   HW+              T +   R G      +
Sbjct: 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN------------VTPMATKRSGA--GVAL 204

Query: 119 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHI 177
           ++D + V+GG +G                       V   +     W  + SM  P    
Sbjct: 205 LNDHIYVVGGFDGT-----------------AHLSSVEAYNIRTDSWTTVTSMTTP--RC 245

Query: 178 EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR 229
                ++   +  + G             +  I  ++     W V+  +  +
Sbjct: 246 YVGATVLRGRLYAIAGYDGNSL-------LSSIECYDPIIDSWEVVTSMGTQ 290

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 38/243 (15%)

Query: 8   SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 67
           +   +  +   + VV G    Q   P       D +T++W  LP +   R   A+     
Sbjct: 7   TRARLGANEV-LLVVGGFGSQQS--PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63

Query: 68  RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLV 125
           R++V+GG         V+       +    +  W +   + + RG        + D + V
Sbjct: 64  RIYVIGGYDGRSRLSSVECLDYTADE----DGVWYSVAPMNVRRGLA--GATTLGDMIYV 117

Query: 126 IGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLV 184
            GG +G              R   +  YD    +D   +W +L  M           V+ 
Sbjct: 118 SGGFDGS------------RRHTSMERYD--PNID---QWSMLGDMQTAREG--AGLVVA 158

Query: 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYF 244
           +  I  +GG    +      V       ++ +T  W  +  +  +         N  +Y 
Sbjct: 159 SGVIYCLGGYDGLNIL--NSVEK-----YDPHTGHWTNVTPMATKRSGAGVALLNDHIYV 211

Query: 245 TSG 247
             G
Sbjct: 212 VGG 214

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 8   SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 67
           S  G+     +IYVV G  G       +     +  T  W  +  +  PR      + RG
Sbjct: 198 SGAGVALLNDHIYVVGGFDGTAH---LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254

Query: 68  RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 121
           RL+ + G   N     ++ +        P+   W     +          V+ +
Sbjct: 255 RLYAIAGYDGNSLLSSIECYD-------PIIDSWEVVTSMGTQRCDAGVCVLRE 301

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 86.7 bits (215), Expect = 5e-20
 Identities = 40/233 (17%), Positives = 68/233 (29%), Gaps = 44/233 (18%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
                G+      IYVV G+               D  + KW +  PLP   Y       
Sbjct: 88  PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH 147

Query: 66  RGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
              ++V+GG G +         Y P+   W                 +   R        
Sbjct: 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE------------LAPMQTARSLF--GAT 193

Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSH 176
           V D R++V  G                   +   VY        + KW    + P+    
Sbjct: 194 VHDGRIIVAAGVTDT------------GLTSSAEVYS-----ITDNKWAPFEAFPQE--R 234

Query: 177 IEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227
              + V +  ++  +GG  T E          + +I+++N    KW  + +  
Sbjct: 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI 287

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 80.9 bits (200), Expect = 7e-18
 Identities = 51/252 (20%), Positives = 79/252 (31%), Gaps = 57/252 (22%)

Query: 8   SHLGMVTDGRYIYVVTGQ-YGPQCRGPTAHTFVL--DTETKKWQDLPPLPVPRYAPATQL 64
           +H+ +VT    ++V  G  Y    +      + L  D    +W  +PPLP PR       
Sbjct: 37  NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE 96

Query: 65  WRGRLHVMGGSGEN----------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 114
               ++V+GG               Y      W  +     PL        P    G   
Sbjct: 97  ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES----DPL--------PYVVYGH-- 142

Query: 115 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD---DVYMLDDEMKWKVLPSMP 171
             +   D + VIGG+  D          KC  +   VYD            +WK L  M 
Sbjct: 143 TVLSHMDLVYVIGGKGSD---------RKCLNKMC-VYDPKKF--------EWKELAPMQ 184

Query: 172 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK 231
              S   F   + +  I++  G T+   T+           +++   KW      P    
Sbjct: 185 TARSL--FGATVHDGRIIVAAGVTDTGLTS-------SAEVYSITDNKWAPFEAFPQERS 235

Query: 232 TTLAGYWNGWLY 243
           +       G LY
Sbjct: 236 SLSLVSLVGTLY 247

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 11/129 (8%)

Query: 8   SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 67
           S  G       I V  G         T+   V      KW      P  R + +     G
Sbjct: 188 SLFGATVHDGRIIVAAGVTDTGL---TSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVG 244

Query: 68  RLHVMGG-SGENRYTPEVDHWSLA---VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 123
            L+ +GG +     + E+    L      +    EK+W   +             +  RL
Sbjct: 245 TLYAIGGFATLETESGELVPTELNDIWRYN--EEEKKWEGVLREIA--YAAGATFLPVRL 300

Query: 124 LVIGGQEGD 132
            V+   +  
Sbjct: 301 NVLRLTKMA 309

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 29/207 (14%)

Query: 41  DTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 99
           D    +         VP+   +      ++ V GG   N    E D  S        L+ 
Sbjct: 19  DPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKE-DPMSAYFLQFDHLDS 77

Query: 100 EWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM 157
           EW     +P PR           + + V+GG+E                  E   D V  
Sbjct: 78  EWLGMPPLPSPRCLF--GLGEALNSIYVVGGREIK--------------DGERCLDSVMC 121

Query: 158 LD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 216
            D    KW     +P          +   + + ++GG         KM        ++  
Sbjct: 122 YDRLSFKWGESDPLPYVVYG--HTVLSHMDLVYVIGGKGSDRKCLNKM------CVYDPK 173

Query: 217 TLKWHVIGKLPYRVKTTLAGYWNGWLY 243
             +W  +  +        A   +G + 
Sbjct: 174 KFEWKELAPMQTARSLFGATVHDGRII 200

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 41/251 (16%), Positives = 67/251 (26%), Gaps = 49/251 (19%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
                       V     +Y++ G        P       +     W      P PR + 
Sbjct: 42  PF--EKRRDAACVFWDNVVYILGGSQL----FPIKRMDCYNVVKDSWYSKLGPPTPRDSL 95

Query: 61  ATQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 112
           A     G+++  GGS            Y    + W         +           R   
Sbjct: 96  AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK----PSM--------LTQRCSH 143

Query: 113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPK 172
               V  +  + V GG  G+      +   +     E VYD     +    W  L  M +
Sbjct: 144 --GMVEANGLIYVCGGSLGN------NVSGRVLNSCE-VYD--PATE---TWTELCPMIE 189

Query: 173 PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKT 232
              +     V V + I  VGG               E +   LN   W ++  +P++  T
Sbjct: 190 ARKN--HGLVFVKDKIFAVGGQNGLGGLDN-----VEYYDIKLNE--WKMVSPMPWKGVT 240

Query: 233 TLAGYWNGWLY 243
                    +Y
Sbjct: 241 VKCAAVGSIVY 251

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 43/234 (18%), Positives = 68/234 (29%), Gaps = 54/234 (23%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
               L        IY   G             +  DT T+ W   P +   R +      
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECY--DTRTESWHTKPSMLTQRCSHGMVEA 148

Query: 66  RGRLHVMGGSGEN-----------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 114
            G ++V GGS  N            Y P  + W+                +   R     
Sbjct: 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE------------LCPMIEARKNH-- 194

Query: 115 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKP 173
             V V D++  +GGQ G                     D+V   D    +WK++  MP  
Sbjct: 195 GLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSPMPWK 237

Query: 174 DSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227
              +      V + + ++ G             +G I ++N  T KW    K+ 
Sbjct: 238 --GVTVKCAAVGSIVYVLAGFQGVGR-------LGHILEYNTETDKWVANSKVR 282

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
           A  + G+V     I+ V GQ G        +    D +  +W+ + P+P           
Sbjct: 190 ARKNHGLVFVKDKIFAVGGQNGLGG---LDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246

Query: 66  RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLV 125
              ++V+ G         +  ++           +W     +         + V    + 
Sbjct: 247 GSIVYVLAGFQGVGRLGHILEYN-------TETDKWVANSKVRAFPVTSCLICV----VD 295

Query: 126 IGGQEGD 132
             G   +
Sbjct: 296 TCGANEE 302

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 28/199 (14%), Positives = 49/199 (24%), Gaps = 44/199 (22%)

Query: 67  GRLHVMGGSGEN---RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 123
            R+ + GGS       + P+   W+                    R     ACV  D+ +
Sbjct: 13  YRIALFGGSQPQSCRYFNPKDYSWTDI------------RCPFEKRR--DAACVFWDNVV 58

Query: 124 LVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWV 182
            ++GG +                        +   +  +  W      P P      A  
Sbjct: 59  YILGGSQLF------------------PIKRMDCYNVVKDSWYSKLGPPTPRDS--LAAC 98

Query: 183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWL 242
                I   GG+   +          E +  +  T  WH    +  +  +      NG +
Sbjct: 99  AAEGKIYTSGGSEVGNSALYLF----ECY--DTRTESWHTKPSMLTQRCSHGMVEANGLI 152

Query: 243 YFTSGQRDKGPDDPAPRKV 261
           Y   G              
Sbjct: 153 YVCGGSLGNNVSGRVLNSC 171

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 84.3 bits (209), Expect = 4e-19
 Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 45/233 (19%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
           A    G+      IYVV G    Q           D    KW ++  LP+  Y       
Sbjct: 99  ARCLFGLGEVDDKIYVVAG-KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157

Query: 66  RGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
            G ++ +GG  ++         Y P+   W                 +  PR        
Sbjct: 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD------------LAPMKTPRSMF--GVA 203

Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSH 176
           +   ++++ GG   D                 V  +D         KW+V+   P+    
Sbjct: 204 IHKGKIVIAGGVTED------------GLSASVEAFD-----LKTNKWEVMTEFPQE--R 244

Query: 177 IEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227
              + V +  S+  +GG    +          V +I+++  +  +W  + K  
Sbjct: 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEI 297

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 59/254 (23%), Positives = 90/254 (35%), Gaps = 50/254 (19%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYG-PQCRGPTAHTFV--LDTETKKWQDLPPLPVPRY 58
             ++  +H  +VT    +YVV G Y   + +     ++   LD  + +W  LPPLP  R 
Sbjct: 42  AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101

Query: 59  APATQLWRGRLHVMGGSGEN---------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 109
                    +++V+ G              Y P    WS      K L        PI  
Sbjct: 102 LFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV----KNL--------PIKV 149

Query: 110 GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 169
            G     +  +  +  +GG+  D          KC+ R   +Y+       +  WK L  
Sbjct: 150 YGH--NVISHNGMIYCLGGKTDD---------KKCTNRVF-IYN-----PKKGDWKDLAP 192

Query: 170 MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR 229
           M  P S   F   +    IVI GG TE   +         +  F+L T KW V+ + P  
Sbjct: 193 MKTPRSM--FGVAIHKGKIVIAGGVTEDGLSA-------SVEAFDLKTNKWEVMTEFPQE 243

Query: 230 VKTTLAGYWNGWLY 243
             +       G LY
Sbjct: 244 RSSISLVSLAGSLY 257

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 41/238 (17%)

Query: 10  LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW-QDLPPLPVPRYAPATQLWRGR 68
            GM      I +V                  D    +         +PR   +    + +
Sbjct: 10  HGMFVKDL-ILLVNDTA----------AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQ 58

Query: 69  LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVI 126
           ++V+GG   +    +             +  EW     +P  R         VDD++ V+
Sbjct: 59  VYVVGGLYVDEENKD-QPLQSYFFQLDNVSSEWVGLPPLPSARCLF--GLGEVDDKIYVV 115

Query: 127 GGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN 185
            G++                  E   D V   D    KW  + ++P          +  N
Sbjct: 116 AGKDLQ---------------TEASLDSVLCYDPVAAKWSEVKNLPIKVYG--HNVISHN 158

Query: 186 NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLY 243
             I  +GG T+    T ++      F +N     W  +  +             G + 
Sbjct: 159 GMIYCLGGKTDDKKCTNRV------FIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV 210

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 5/123 (4%)

Query: 8   SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 67
           S  G+      I +  G         +A     D +T KW+ +   P  R + +     G
Sbjct: 198 SMFGVAIHKGKIVIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSLAG 254

Query: 68  RLHVMGG-SGENRYTPEVDHWSLA-VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLV 125
            L+ +GG +     + E     +  +   +  +KEW   +   R     +C+     L  
Sbjct: 255 SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFK 314

Query: 126 IGG 128
           +  
Sbjct: 315 LSK 317

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 53/232 (22%)

Query: 6   AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65
             S LG       +Y V G  G       +     + ++ +W  + P+   R +    + 
Sbjct: 98  RRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154

Query: 66  RGRLHVMGGSGEN---------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 116
            G L+ +GG              Y    + W+               E+   R G     
Sbjct: 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY------------IAEMSTRRSGA--GV 200

Query: 117 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDS 175
            V+++ L  +GG +G               R  V VYD          W+ +  M     
Sbjct: 201 GVLNNLLYAVGGHDGP------------LVRKSVEVYD-----PTTNAWRQVADMNMC-- 241

Query: 176 HIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227
                   VN  + +VGG             +  +  +N  T KW V+    
Sbjct: 242 RRNAGVCAVNGLLYVVGGDDGSCN-------LASVEYYNPTTDKWTVVSSCM 286

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 41/234 (17%), Positives = 72/234 (30%), Gaps = 40/234 (17%)

Query: 13  VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVM 72
           +   + + VV GQ               D + ++W  +  LP  R         G +  +
Sbjct: 12  MNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAV 67

Query: 73  GGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP--IPRGGPHRACVVVDDRLLVIGGQE 130
           GG   +     VD +        P++ +W +       R        V++  L  +GG +
Sbjct: 68  GGFNGSLRVRTVDSYD-------PVKDQWTSVANMRDRRSTL--GAAVLNGLLYAVGGFD 118

Query: 131 GDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIV 189
           G             +  + V  Y+     +   +W  +  M    S       +V   + 
Sbjct: 119 GS------------TGLSSVEAYN--IKSN---EWFHVAPMNTRRSS--VGVGVVGGLLY 159

Query: 190 IVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLY 243
            VGG           V       +N  T +W  I ++  R      G  N  LY
Sbjct: 160 AVGGYDVASRQCLSTVEC-----YNATTNEWTYIAEMSTRRSGAGVGVLNNLLY 208

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 60
           M      S +G+   G  +Y V G Y    R   +     +  T +W  +  +   R   
Sbjct: 142 MNT--RRSSVGVGVVGGLLYAV-GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA 198

Query: 61  ATQLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 113
              +    L+ +GG            Y P  + W                ++ + R    
Sbjct: 199 GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV------------ADMNMCRRNA- 245

Query: 114 RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPK 172
                V+  L V+GG +G                  V  Y+         KW V+ S   
Sbjct: 246 -GVCAVNGLLYVVGGDDGS------------CNLASVEYYN-----PTTDKWTVVSSCM- 286

Query: 173 PDSHIEFAWVLVNNSI 188
                     +++  +
Sbjct: 287 STGRSYAGVTVIDKRL 302

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 34/262 (12%), Positives = 77/262 (29%), Gaps = 43/262 (16%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP- 60
            R M H+    ++    + ++ G+  P      +  ++ D +T++W  +  L   R+   
Sbjct: 439 AR-MCHT-FTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHS 494

Query: 61  ATQLWRGRLHVMGGSGEN----RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 116
           A  L  G + ++GG  E      Y    + +          +   + E            
Sbjct: 495 ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK---------DVTPKDEFFQNSLVSAGLE 545

Query: 117 V-VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDS 175
              V  + +++GG   D            +  ++ +       +      V+  +  P  
Sbjct: 546 FDPVSKQGIILGGGFMDQT----------TVSDKAIIFKYDAENATEPITVIKKLQHPLF 595

Query: 176 HIEF--AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI--------GK 225
                    +    ++IVGGT+      +       I   +  +     I          
Sbjct: 596 QRYGSQIKYITPRKLLIVGGTSPSGLFDRTN----SIISLDPLSETLTSIPISRRIWEDH 651

Query: 226 LPYRVKTTLAGYWNGWLYFTSG 247
                  +L     G ++   G
Sbjct: 652 SLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 38/214 (17%)

Query: 17  RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLWRGRLHVMGG 74
            +          Q          ++    +   L     P+ R      +    +  MGG
Sbjct: 346 CHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGG 405

Query: 75  SGENRYTPEVDHWSLAVKDGKPLEKEWRT---EIPIPRGGPHRACVVVDDRLLVIGGQEG 131
           S   R     +   L++   K   K       E+P+ R       +  +++LL+IGG++ 
Sbjct: 406 SNPYRVN---EILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA 462

Query: 132 DFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKP-DSHIEFAWVLVNNSIV 189
                                 D ++ D    +W ++ S+      H   A  L + +++
Sbjct: 463 P----------------HQGLSDNWIFDMKTREWSMIKSLSHTRFRH--SACSLPDGNVL 504

Query: 190 IVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223
           I+GG TE             +  +N+    +  +
Sbjct: 505 ILGGVTEG----------PAMLLYNVTEEIFKDV 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 6e-07
 Identities = 44/311 (14%), Positives = 82/311 (26%), Gaps = 105/311 (33%)

Query: 2   PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQD---LPPLPVPR 57
             EM    +  V    Y ++++     + R P+  T + ++   + + D        V R
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 58  YAPATQLWRG----R------LHVMGGSGENRYTPEVDHWSLA---VKDGKPLEKE---- 100
             P  +L +     R      +  + GSG+           +A       K   K     
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGK---------TWVALDVCLSYKVQCKMDFKI 184

Query: 101 -WRTEIPIPRGGPHRACVVVDDRLLVI----GGQEGDFMAKPGSPI---------FKCSR 146
            W   + +         + +  +LL           D  +     I            S+
Sbjct: 185 FW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 147 RNE---VVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW---VLV---NNSIV-IVGGTTE 196
             E   +V  +V    +   W              F     +L+      +   +   T 
Sbjct: 242 PYENCLLVLLNVQ---NAKAWNA------------FNLSCKILLTTRFKQVTDFLSAATT 286

Query: 197 KHPT--------TKKMVLVGEIFQFNLNTLKW--HVIGKLPYRVKTT------LAG---- 236
            H +        T   V    +       LK+       LP  V TT      +      
Sbjct: 287 THISLDHHSMTLTPDEVK--SLL------LKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 237 ----YWNGWLY 243
                W+ W +
Sbjct: 339 DGLATWDNWKH 349

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 22/206 (10%), Positives = 60/206 (29%), Gaps = 23/206 (11%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGP--QCRGPTAHTFVLDTETKKWQDLPPLPVPRY 58
           +   +     G+     + ++   + G   Q    TA  +   + +   +        R 
Sbjct: 334 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393

Query: 59  APATQL---------WRGRLHVMGGSGENRYTP-EVDHWSLAVKDGKPLEKEWRTEIPIP 108
                +          +G++   GGS + + +    +   + + +             + 
Sbjct: 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 453

Query: 109 RG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVL 167
                H + V+ D    + GGQ      +  +P+F        +Y       ++  +   
Sbjct: 454 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF-----TPEIYVP-----EQDTFYKQ 503

Query: 168 PSMPKPDSHIEFAWVLVNNSIVIVGG 193
                   +   + +L +  +   GG
Sbjct: 504 NPNSIVRVYHSISLLLPDGRVFNGGG 529

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 42/267 (15%), Positives = 78/267 (29%), Gaps = 33/267 (12%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR-YA 59
              +      G+  DG    VVTG            T + D+ +  W   P + V R Y 
Sbjct: 237 TVTKHDMFCPGISMDGNGQIVVTGGND------AKKTSLYDSSSDSWIPGPDMQVARGYQ 290

Query: 60  PATQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG 111
            +  +  GR+  +GGS            Y+P    W+               +       
Sbjct: 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN 350

Query: 112 PHRACVVVDDRLLVIGGQEGD-FMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSM 170
                        + G ++G  F A P + +   +        DV         + +   
Sbjct: 351 ----------HAWLFGWKKGSVFQAGPSTAM---NWYYTSGSGDVKSAGKRQSNRGVAPD 397

Query: 171 PKPDSHIEFAWVLVNNSIVIVGGTTE-KHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY- 228
               + +   +  V   I+  GG+ + +         +  + +   +         L + 
Sbjct: 398 AMCGNAV--MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455

Query: 229 RVKTTLAGYWNGWLYFTSGQRDKGPDD 255
           R   T     +G  + T GQR   P +
Sbjct: 456 RTFHTSVVLPDGSTFITGGQRRGIPFE 482

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.44
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.1
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.39
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.28
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.1
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.85
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	95.18
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.98
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	94.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.81
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.77
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.68
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.41
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.01
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	93.99
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	93.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.38
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.37
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	93.27
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	93.18
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.94
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.92
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	92.72
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.6
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.58
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	92.04
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	91.93
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	91.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	91.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	91.12
3jro_A	753	Fusion protein of protein transport protein SEC13	90.89
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.86
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	90.78
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.68
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.66
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	90.63
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.62
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	90.54
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.45
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	90.32
3ow8_A	321	WD repeat-containing protein 61; structural genomi	89.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	89.8
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	89.77
3ow8_A	321	WD repeat-containing protein 61; structural genomi	89.76
3jro_A	753	Fusion protein of protein transport protein SEC13	89.61
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.21
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	89.17
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	88.72
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	88.67
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	88.63
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	88.3
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	88.29
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	88.19
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.62
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	87.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	87.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	87.12
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	86.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	86.91
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	86.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	86.59
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	86.38
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.3
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.3
1hxn_A	219	Hemopexin, HPX; heme, binding protein; 1.80A {Oryc	86.22
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	86.2
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	85.93
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	85.84
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	85.28
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	85.03
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	85.01
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	84.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	84.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	84.53
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	83.68
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	83.64
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	83.48
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	83.28
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	82.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	82.89
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	82.83
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	82.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	82.73
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	82.41
4a2l_A	795	BT_4663, two-component system sensor histidine kin	82.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	82.01
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	81.79
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	81.65
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	81.1
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	80.91
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	80.77
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	80.69
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	80.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	80.32
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	80.13

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.6e-41  Score=282.41  Aligned_cols=235  Identities=17%  Similarity=0.227  Sum_probs=202.8

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      ++|.+|.+|++++++++||++||..+.   ..++++++||+.+++|+.++++|.+|..|+++.++++||++||.......
T Consensus        47 ~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  123 (302)
T 2xn4_A           47 ELPSRRCRAGMVYMAGLVFAVGGFNGS---LRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGL  123 (302)
T ss_dssp             CCSSCCBSCEEEEETTEEEEESCBCSS---SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEE
T ss_pred             cCCcccccceEEEECCEEEEEeCcCCC---ccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccC
Confidence            467899999999999999999998654   35689999999999999999999999999999999999999998654333


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  160 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  160 (274)
                      .       +++.||+.+++|+.++++|.+|..|+++.++++||++||....               ....+++++.|| .
T Consensus       124 ~-------~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---------------~~~~~~~~~~yd~~  181 (302)
T 2xn4_A          124 S-------SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVA---------------SRQCLSTVECYNAT  181 (302)
T ss_dssp             E-------EEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETT---------------TTEECCCEEEEETT
T ss_pred             c-------eEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCC---------------CCccccEEEEEeCC
Confidence            3       3444458999999999999999999999999999999998644               113467899999 8


Q ss_pred             CCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcC
Q 024009          161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG  240 (274)
Q Consensus       161 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~  240 (274)
                      +++|+.++++|.+|..  ++++..+++||++||.....       ..+++++||+++++|+.+.++|.+|..++++.+++
T Consensus       182 ~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~  252 (302)
T 2xn4_A          182 TNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGGHDGPL-------VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNG  252 (302)
T ss_dssp             TTEEEEECCCSSCCBS--CEEEEETTEEEEECCBSSSS-------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             CCcEEECCCCcccccc--ccEEEECCEEEEECCCCCCc-------ccceEEEEeCCCCCEeeCCCCCCccccCeEEEECC
Confidence            9999999999999887  55688899999999986543       36699999999999999999999999999999999


Q ss_pred             EEEEEccccCCC-CCCCCceeecCCeeeeee
Q 024009          241 WLYFTSGQRDKG-PDDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       241 ~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~  270 (274)
                      +||++||.+... ..+..+|++.++.|+...
T Consensus       253 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          253 LLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             EEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            999999987654 456788999999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=282.69  Aligned_cols=238  Identities=17%  Similarity=0.253  Sum_probs=205.1

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCC-CCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG-ENRY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~   80 (274)
                      ++|.+|.+|++++++++||++||..    ...++++++||+.+++|+.++++|.+|..|+++.++++|||+||.. ....
T Consensus        41 ~~p~~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  116 (306)
T 3ii7_A           41 CPFEKRRDAACVFWDNVVYILGGSQ----LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA  116 (306)
T ss_dssp             CCSCCCBSCEEEEETTEEEEECCBS----SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSC
T ss_pred             CCCcccceeEEEEECCEEEEEeCCC----CCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcE
Confidence            4678999999999999999999987    2467999999999999999999999999999999999999999986 3344


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ..++++|+       +.+++|+.++++|.+|..|+++.++++||++||.....             ....++++++.|| 
T Consensus       117 ~~~~~~~d-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------------~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          117 LYLFECYD-------TRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN-------------VSGRVLNSCEVYDP  176 (306)
T ss_dssp             CCCEEEEE-------TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCT-------------TTCEECCCEEEEET
T ss_pred             eeeEEEEe-------CCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCC-------------CcccccceEEEeCC
Confidence            45555554       89999999999999999999999999999999976441             1123468899999 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN  239 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  239 (274)
                      .+++|+.++++|.+|..  ++++..+++|||+||.....       .++++++||+++++|+.++++|.+|..++++.++
T Consensus       177 ~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  247 (306)
T 3ii7_A          177 ATETWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGLG-------GLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVG  247 (306)
T ss_dssp             TTTEEEEECCCSSCCBS--CEEEEETTEEEEECCEETTE-------EBCCEEEEETTTTEEEECCCCSCCBSCCEEEEET
T ss_pred             CCCeEEECCCccchhhc--ceEEEECCEEEEEeCCCCCC-------CCceEEEeeCCCCcEEECCCCCCCccceeEEEEC
Confidence            99999999999999887  55688899999999986653       3679999999999999999999999999999999


Q ss_pred             CEEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009          240 GWLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       240 ~~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ++||++||....+ ..+...|++.++.|+...++
T Consensus       248 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~  281 (306)
T 3ii7_A          248 SIVYVLAGFQGVGRLGHILEYNTETDKWVANSKV  281 (306)
T ss_dssp             TEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCc
Confidence            9999999987654 44567888999999986554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=9.1e-41  Score=280.91  Aligned_cols=238  Identities=18%  Similarity=0.316  Sum_probs=203.8

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCC-CCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGP-QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~   80 (274)
                      ++|.+|.+|++++++++||++||.... .....++++++||+.+++|+.++++|.+|..|+++.++++|||+||......
T Consensus        56 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  135 (308)
T 1zgk_A           56 DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH  135 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEE
T ss_pred             CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcc
Confidence            467899999999999999999998310 1113578999999999999999999999999999999999999999865444


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ..++++|+       +.+++|+.++++|.+|..|+++.++++||++||.....                 .+++++.|| 
T Consensus       136 ~~~~~~yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~  191 (308)
T 1zgk_A          136 HNSVERYE-------PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-----------------RLNSAECYYP  191 (308)
T ss_dssp             CCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCCEEEEET
T ss_pred             cccEEEEC-------CCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCC-----------------cCceEEEEeC
Confidence            44555554       89999999999999999999999999999999986541                 157899999 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN  239 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  239 (274)
                      .+++|+.++++|.+|..  ++++..+++|||+||.....       .++++++||+++++|+.+.++|.+|..++++.++
T Consensus       192 ~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~  262 (308)
T 1zgk_A          192 ERNEWRMITAMNTIRSG--AGVCVLHNCIYAAGGYDGQD-------QLNSVERYDVETETWTFVAPMKHRRSALGITVHQ  262 (308)
T ss_dssp             TTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             CCCeEeeCCCCCCcccc--ceEEEECCEEEEEeCCCCCC-------ccceEEEEeCCCCcEEECCCCCCCccceEEEEEC
Confidence            89999999999999987  45678899999999987543       3669999999999999999999999999999999


Q ss_pred             CEEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009          240 GWLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       240 ~~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ++||++||.+... ..+..+|++.++.|+...++
T Consensus       263 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  296 (308)
T 1zgk_A          263 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM  296 (308)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCcCCCcccceEEEEcCCCCEEeecCCC
Confidence            9999999987654 45567899999999987655

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.2e-41  Score=284.52  Aligned_cols=239  Identities=21%  Similarity=0.338  Sum_probs=199.4

Q ss_pred             CCCCCCcCceeeEEeCCEEEEEcCcCCC---CCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCC
Q 024009            1 MPREMAHSHLGMVTDGRYIYVVTGQYGP---QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE   77 (274)
Q Consensus         1 ~p~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~   77 (274)
                      +|.|.+|.+|++++++++||++||....   ......+++++||+.+++|+.++++|.+|..|+++.++++|||+||...
T Consensus        30 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  109 (315)
T 4asc_A           30 LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREI  109 (315)
T ss_dssp             CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEES
T ss_pred             CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcC
Confidence            4668899999999999999999997321   1112345699999999999999999999999999999999999999642


Q ss_pred             ---CCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 024009           78 ---NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  154 (274)
Q Consensus        78 ---~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (274)
                         .....++++|       |+.+++|+.++++|.+|.+|+++.++++|||+||....                ...+++
T Consensus       110 ~~~~~~~~~~~~~-------d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~----------------~~~~~~  166 (315)
T 4asc_A          110 KDGERCLDSVMCY-------DRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD----------------RKCLNK  166 (315)
T ss_dssp             STTCCBCCCEEEE-------ETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT----------------SCBCCC
T ss_pred             CCCCcccceEEEE-------CCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC----------------Ccccce
Confidence               3334444444       48999999999999999999999999999999998433                123689


Q ss_pred             eEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcccee
Q 024009          155 VYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTT  233 (274)
Q Consensus       155 ~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~  233 (274)
                      ++.|| .+++|+.++++|.+|..  ++++..+++|||+||.....       .++++++||+++++|+.++++|.+|..+
T Consensus       167 ~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~  237 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPMQTARSL--FGATVHDGRIIVAAGVTDTG-------LTSSAEVYSITDNKWAPFEAFPQERSSL  237 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEEEEECSSS-------EEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             EEEEeCCCCeEEECCCCCCchhc--eEEEEECCEEEEEeccCCCC-------ccceEEEEECCCCeEEECCCCCCcccce
Confidence            99999 89999999999999987  55688899999999987654       3669999999999999999999999999


Q ss_pred             eeEEEcCEEEEEccccCCC----------CCCCCceeecCCeeeeeec
Q 024009          234 LAGYWNGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       234 ~~~~~~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~~~  271 (274)
                      +++.++++||++||.....          ..+..+|++.++.|+...+
T Consensus       238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~  285 (315)
T 4asc_A          238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLR  285 (315)
T ss_dssp             EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEES
T ss_pred             eEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhcc
Confidence            9999999999999986421          2345678888899987643

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=8.6e-40  Score=273.86  Aligned_cols=235  Identities=19%  Similarity=0.271  Sum_probs=202.6

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC---eeeCCCCCCCCCCceEEEECCeEEEEcCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK---WQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      ++|.+|.+|+++..+++||++||..+.   ...+++++||+.+++   |+.++++|.+|..|+++.++++||++||....
T Consensus        48 ~~p~~r~~~~~~~~~~~l~v~GG~~~~---~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~  124 (301)
T 2vpj_A           48 SITRKRRYVASVSLHDRIYVIGGYDGR---SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS  124 (301)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSS---CBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             CCChhhccccEEEECCEEEEEcCCCCC---ccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCC
Confidence            357789999999999999999998743   357899999999999   99999999999999999999999999998755


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEe
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML  158 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (274)
                      ....++++|       |+.+++|+.++++|.+|..|+++.++++||++||.+...                 .+++++.|
T Consensus       125 ~~~~~~~~~-------d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~~  180 (301)
T 2vpj_A          125 RRHTSMERY-------DPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-----------------ILNSVEKY  180 (301)
T ss_dssp             CBCCEEEEE-------ETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCCEEEE
T ss_pred             cccceEEEE-------cCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCc-----------------ccceEEEE
Confidence            444444444       489999999999999999999999999999999976431                 35789999


Q ss_pred             C-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEE
Q 024009          159 D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY  237 (274)
Q Consensus       159 d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~  237 (274)
                      | .+++|+.++++|.+|..  ++++..+++|||+||.....       .++++++||+++++|+.++++|.+|..++++.
T Consensus       181 d~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~  251 (301)
T 2vpj_A          181 DPHTGHWTNVTPMATKRSG--AGVALLNDHIYVVGGFDGTA-------HLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV  251 (301)
T ss_dssp             ETTTTEEEEECCCSSCCBS--CEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eCCCCcEEeCCCCCccccc--ceEEEECCEEEEEeCCCCCc-------ccceEEEEeCCCCcEEECCCCCCcccceeEEE
Confidence            9 89999999999999987  55688899999999987654       36699999999999999999999999999999


Q ss_pred             EcCEEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009          238 WNGWLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       238 ~~~~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ++++||++||..... ..+...|++.++.|+...++
T Consensus       252 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  287 (301)
T 2vpj_A          252 LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSM  287 (301)
T ss_dssp             ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCC
Confidence            999999999986544 24557788889999876554

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=4.6e-40  Score=277.74  Aligned_cols=239  Identities=24%  Similarity=0.371  Sum_probs=196.8

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCC--CCC-CCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGP--QCR-GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN   78 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~--~~~-~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~   78 (274)
                      |.|.+|.+|++++.+++||++||....  ... ...+++++||+.+++|+.++++|.+|..|+++.++++|||+||....
T Consensus        42 ~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  121 (318)
T 2woz_A           42 AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ  121 (318)
T ss_dssp             CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTT
T ss_pred             CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCC
Confidence            556899999999999999999996421  111 22345999999999999999999999999999999999999997521


Q ss_pred             CCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEe
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML  158 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (274)
                      .     .....+++.||+.+++|+.++++|.+|.+|+++.++++||++||....                ...+++++.|
T Consensus       122 ~-----~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~----------------~~~~~~~~~y  180 (318)
T 2woz_A          122 T-----EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD----------------KKCTNRVFIY  180 (318)
T ss_dssp             T-----CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESS----------------SCBCCCEEEE
T ss_pred             C-----CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCC----------------CCccceEEEE
Confidence            1     111224555569999999999999999999999999999999997533                1236789999


Q ss_pred             C-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEE
Q 024009          159 D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY  237 (274)
Q Consensus       159 d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~  237 (274)
                      | .+++|+.++++|.+|..  ++++..+++|||+||.....       .++++++||+++++|+.++++|.+|..|+++.
T Consensus       181 d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  251 (318)
T 2woz_A          181 NPKKGDWKDLAPMKTPRSM--FGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMTEFPQERSSISLVS  251 (318)
T ss_dssp             ETTTTEEEEECCCSSCCBS--CEEEEETTEEEEEEEEETTE-------EEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred             cCCCCEEEECCCCCCCccc--ceEEEECCEEEEEcCcCCCC-------ccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence            9 89999999999999987  45688899999999987643       36699999999999999999999999999999


Q ss_pred             EcCEEEEEccccCCC----------CCCCCceeecCCeeeeee
Q 024009          238 WNGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTKL  270 (274)
Q Consensus       238 ~~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~~  270 (274)
                      ++++||++||.....          ..+..+|++.++.|+..+
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  294 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGML  294 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhc
Confidence            999999999987531          345567888888998653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.4e-39  Score=271.29  Aligned_cols=234  Identities=17%  Similarity=0.291  Sum_probs=191.7

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCC----CC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS----GE   77 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~   77 (274)
                      |.|.+|..++++.++++||++||.. .   ..++++++||+.+++|+.++++|.+|..|+++.++++||++||.    ..
T Consensus        10 ~~~~~~~~~~~~~~~~~i~v~GG~~-~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~   85 (308)
T 1zgk_A           10 SSGLVPRGSHAPKVGRLIYTAGGYF-R---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG   85 (308)
T ss_dssp             -----------CCCCCCEEEECCBS-S---SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTE
T ss_pred             cCCeeeCCccccCCCCEEEEEeCcC-C---CCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCC
Confidence            5678999999999999999999982 1   45789999999999999999999999999999999999999997    33


Q ss_pred             CCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEE
Q 024009           78 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM  157 (274)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (274)
                      .....++.+|       |+.+++|+.++++|.+|..++++.++++||++||....                 ..+++++.
T Consensus        86 ~~~~~~~~~~-------d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~  141 (308)
T 1zgk_A           86 NTDSSALDCY-------NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-----------------IHHNSVER  141 (308)
T ss_dssp             EEECCCEEEE-------ETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-----------------EECCCEEE
T ss_pred             CeecceEEEE-------CCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-----------------cccccEEE
Confidence            3333444444       48999999999999999999999999999999997643                 13578999


Q ss_pred             eC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeE
Q 024009          158 LD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG  236 (274)
Q Consensus       158 ~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~  236 (274)
                      || .+++|+.++++|.+|..  ++++..+++||++||.....       .++++++||+.+++|+.++++|.+|..++++
T Consensus       142 yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  212 (308)
T 1zgk_A          142 YEPERDEWHLVAPMLTRRIG--VGVAVLNRLLYAVGGFDGTN-------RLNSAECYYPERNEWRMITAMNTIRSGAGVC  212 (308)
T ss_dssp             EETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSC-------BCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred             ECCCCCeEeECCCCCccccc--eEEEEECCEEEEEeCCCCCC-------cCceEEEEeCCCCeEeeCCCCCCccccceEE
Confidence            99 89999999999999987  45677899999999987654       2669999999999999999999999999999


Q ss_pred             EEcCEEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009          237 YWNGWLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       237 ~~~~~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      .++++||++||..... ..+...|++.++.|+...++
T Consensus       213 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          213 VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            9999999999987644 45667888889999876544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.2e-37  Score=258.86  Aligned_cols=222  Identities=16%  Similarity=0.244  Sum_probs=188.4

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK   95 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d   95 (274)
                      .+.||++||...      .+++++||+.+++|+.++++|.+|..|+++.++++||++||.. .....++++|       |
T Consensus        11 ~~~l~~~GG~~~------~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~-------d   76 (306)
T 3ii7_A           11 HDYRIALFGGSQ------PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCY-------N   76 (306)
T ss_dssp             CCEEEEEECCSS------TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEE-------E
T ss_pred             cceEEEEeCCCC------CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEE-------e
Confidence            478999999754      5889999999999999999999999999999999999999987 3333444444       4


Q ss_pred             CCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCC
Q 024009           96 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  174 (274)
Q Consensus        96 ~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~  174 (274)
                      +.+++|+.++++|.+|.+|+++.++++|||+||.+..                ...+++++.|| .+++|+.++++|.+|
T Consensus        77 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~----------------~~~~~~~~~~d~~~~~W~~~~~~p~~r  140 (306)
T 3ii7_A           77 VVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVG----------------NSALYLFECYDTRTESWHTKPSMLTQR  140 (306)
T ss_dssp             TTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTT----------------BSCCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCeEEECCCCCccccceeEEEECCEEEEECCCCCC----------------CcEeeeEEEEeCCCCceEeCCCCcCCc
Confidence            8999999999999999999999999999999997632                12357899999 899999999999999


Q ss_pred             ccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCC-C
Q 024009          175 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKG-P  253 (274)
Q Consensus       175 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~-~  253 (274)
                      ..  ++++..+++||++||........   ..++++++||+++++|+.++++|.+|..|+++.++++||++||..... .
T Consensus       141 ~~--~~~~~~~~~iyv~GG~~~~~~~~---~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~  215 (306)
T 3ii7_A          141 CS--HGMVEANGLIYVCGGSLGNNVSG---RVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGL  215 (306)
T ss_dssp             BS--CEEEEETTEEEEECCEESCTTTC---EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEB
T ss_pred             ce--eEEEEECCEEEEECCCCCCCCcc---cccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCC
Confidence            87  45678899999999986654211   136799999999999999999999999999999999999999987654 4


Q ss_pred             CCCCceeecCCeeeeeecc
Q 024009          254 DDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       254 ~~~~~~~~~~~~W~~~~~~  272 (274)
                      .+..+|++.++.|+...++
T Consensus       216 ~~~~~yd~~~~~W~~~~~~  234 (306)
T 3ii7_A          216 DNVEYYDIKLNEWKMVSPM  234 (306)
T ss_dssp             CCEEEEETTTTEEEECCCC
T ss_pred             ceEEEeeCCCCcEEECCCC
Confidence            5667888899999876544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-37  Score=257.78  Aligned_cols=224  Identities=18%  Similarity=0.292  Sum_probs=191.2

Q ss_pred             EeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeec
Q 024009           14 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD   93 (274)
Q Consensus        14 ~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~   93 (274)
                      ..+++||++||.....  ..++++++||+.+++|+.++++|.+|..|+++.++++||++||........++.+|+     
T Consensus        12 ~~~~~i~~~GG~~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d-----   84 (301)
T 2vpj_A           12 GANEVLLVVGGFGSQQ--SPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLD-----   84 (301)
T ss_dssp             -CCEEEEEECCEETTT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEE-----
T ss_pred             cCCCEEEEEeCccCCC--cceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEE-----
Confidence            4688999999943322  357899999999999999999999999999999999999999987544444444444     


Q ss_pred             CCCCCCc---eeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCC
Q 024009           94 GKPLEKE---WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS  169 (274)
Q Consensus        94 ~d~~~~~---W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~  169 (274)
                        +.+++   |+.++++|.+|..|+++.++++||++||.....                 .+++++.|| .+++|+.+++
T Consensus        85 --~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-----------------~~~~~~~~d~~~~~W~~~~~  145 (301)
T 2vpj_A           85 --YTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-----------------RHTSMERYDPNIDQWSMLGD  145 (301)
T ss_dssp             --TTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCEEEEEETTTTEEEEEEE
T ss_pred             --CCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-----------------ccceEEEEcCCCCeEEECCC
Confidence              88999   999999999999999999999999999986431                 257899999 8999999999


Q ss_pred             CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEcccc
Q 024009          170 MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQR  249 (274)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~  249 (274)
                      +|.+|..  ++++..+++||++||.....       .++++++||+.+++|+.++++|.+|..++++.++++||++||..
T Consensus       146 ~p~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~  216 (301)
T 2vpj_A          146 MQTAREG--AGLVVASGVIYCLGGYDGLN-------ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD  216 (301)
T ss_dssp             CSSCCBS--CEEEEETTEEEEECCBCSSC-------BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             CCCCccc--ceEEEECCEEEEECCCCCCc-------ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCC
Confidence            9999887  45677899999999986654       36799999999999999999999999999999999999999987


Q ss_pred             CCC-CCCCCceeecCCeeeeeecc
Q 024009          250 DKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       250 ~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ... ..+...|++.++.|+...++
T Consensus       217 ~~~~~~~v~~yd~~~~~W~~~~~~  240 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWTTVTSM  240 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CCcccceEEEEeCCCCcEEECCCC
Confidence            655 56667888899999876544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=257.91  Aligned_cols=227  Identities=18%  Similarity=0.292  Sum_probs=190.4

Q ss_pred             eeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEee
Q 024009           11 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA   90 (274)
Q Consensus        11 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~   90 (274)
                      ..+.++++||++||...    ..++++++||+.+++|..++++|.+|..|+++.++++||++||........++++|+  
T Consensus        10 ~~~~~~~~i~v~GG~~~----~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d--   83 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAP----KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYD--   83 (302)
T ss_dssp             -----CEEEEEECCBSS----SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEE--
T ss_pred             cccCCCCEEEEECCCCC----CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEEC--
Confidence            34456889999999754    246889999999999999999999999999999999999999987554444444444  


Q ss_pred             eecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCC
Q 024009           91 VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS  169 (274)
Q Consensus        91 ~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~  169 (274)
                           +.+++|+.++++|.+|..|+++.++++||++||....                 ..+++++.|| .+++|+.+++
T Consensus        84 -----~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~~d~~~~~W~~~~~  141 (302)
T 2xn4_A           84 -----PVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-----------------TGLSSVEAYNIKSNEWFHVAP  141 (302)
T ss_dssp             -----TTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-----------------CEEEEEEEEETTTTEEEEECC
T ss_pred             -----CCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-----------------ccCceEEEEeCCCCeEeecCC
Confidence                 8999999999999999999999999999999997643                 1257899999 8999999999


Q ss_pred             CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEcccc
Q 024009          170 MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQR  249 (274)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~  249 (274)
                      +|.+|..  ++++..+++||++||......     ..++++++||+.+++|+.++++|.+|..++++.++++||++||..
T Consensus       142 ~p~~r~~--~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  214 (302)
T 2xn4_A          142 MNTRRSS--VGVGVVGGLLYAVGGYDVASR-----QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD  214 (302)
T ss_dssp             CSSCCBS--CEEEEETTEEEEECCEETTTT-----EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred             CCCcccC--ceEEEECCEEEEEeCCCCCCC-----ccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence            9999887  556888999999999865531     136689999999999999999999999999999999999999987


Q ss_pred             CCC-CCCCCceeecCCeeeeeecc
Q 024009          250 DKG-PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       250 ~~~-~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ... ..+...|++.++.|+...++
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~  238 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADM  238 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCC
T ss_pred             CCcccceEEEEeCCCCCEeeCCCC
Confidence            654 45667888899999876554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=6.4e-38  Score=268.60  Aligned_cols=254  Identities=19%  Similarity=0.226  Sum_probs=188.9

Q ss_pred             CCC-CCcCceeeEEeCCEEEEEcCc-C-CCCCCCCCCeeEEEECCCCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCC
Q 024009            2 PRE-MAHSHLGMVTDGRYIYVVTGQ-Y-GPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGE   77 (274)
Q Consensus         2 p~~-~~r~~~~~~~~~~~iyv~GG~-~-~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~   77 (274)
                      |+| .+|.+|++++++++|||+||. . .......++++++||+.+++|+.+++++ .+|..|+++.++++|||+||...
T Consensus        50 ~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  129 (357)
T 2uvk_A           50 AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQ  129 (357)
T ss_dssp             CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCH
T ss_pred             CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCC
Confidence            456 789999999999999999998 3 1222245789999999999999999888 89999999999999999999753


Q ss_pred             CCCCC---------------------------CccceEeeeecCCCCCCceeeccCCCCCCCc-ceeEEeCCEEEEEccC
Q 024009           78 NRYTP---------------------------EVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH-RACVVVDDRLLVIGGQ  129 (274)
Q Consensus        78 ~~~~~---------------------------~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~-~~~~~~~~~iyv~GG~  129 (274)
                      .....                           ....+..+++.||+.+++|+.++++|.++.. ++++..+++|||+||.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~  209 (357)
T 2uvk_A          130 NIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGE  209 (357)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCE
T ss_pred             CcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeee
Confidence            21000                           0001122444555899999999999976544 8999999999999997


Q ss_pred             CCCCCCCCCCCccccccCceeecCceEEeC---CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCC------
Q 024009          130 EGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT------  200 (274)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~------  200 (274)
                      ...                ...+.+++.||   .+++|+.+++++.++.++.++++..+++|||+||.......      
T Consensus       210 ~~~----------------~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g  273 (357)
T 2uvk_A          210 AKP----------------GLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNG  273 (357)
T ss_dssp             EET----------------TEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTT
T ss_pred             cCC----------------CcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCccccccc
Confidence            533                12356777774   67899999999888877667789999999999997543100      


Q ss_pred             ----cccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCC--CCCCceeecCCeeeeeec
Q 024009          201 ----TKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGP--DDPAPRKVHGDMWRTKLL  271 (274)
Q Consensus       201 ----~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~--~~~~~~~~~~~~W~~~~~  271 (274)
                          .+....+.++++||+++++|++++++|.+|..++++.++++|||+||.+..+.  .+...+++.++.|....|
T Consensus       274 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          274 KNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             ceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence                00001245899999999999999999999999999999999999999876553  344455666777765544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=7.7e-37  Score=261.89  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=185.8

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECC--CCCeeeCCCCC-CCCCCceEEEECCeEEEEcCC-C-
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE--TKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGS-G-   76 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~-   76 (274)
                      |+|.+|.++++++++++|||+||...       +++++||+.  +++|+.++++| .+|..|+++.++++|||+||. . 
T Consensus         5 ~lP~~r~~~~~~~~~~~iyv~GG~~~-------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~   77 (357)
T 2uvk_A            5 ETPVPFKSGTGAIDNDTVYIGLGSAG-------TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKN   77 (357)
T ss_dssp             CCSSCCCSCEEEEETTEEEEECGGGT-------TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEEC
T ss_pred             CCCccccceEEEEECCEEEEEeCcCC-------CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCC
Confidence            56889999999999999999999753       479999998  48999999999 899999999999999999997 2 


Q ss_pred             ---CCCCCCCccceEeeeecCCCCCCceeeccCCC-CCCCcceeEEeCCEEEEEccCCCCCCCC---------CCC----
Q 024009           77 ---ENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP-RGGPHRACVVVDDRLLVIGGQEGDFMAK---------PGS----  139 (274)
Q Consensus        77 ---~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~~~~~~~~~~~~~iyv~GG~~~~~~~~---------~~~----  139 (274)
                         ......++       +.||+.+++|+.+++++ .+|.+|+++..+++|||+||......+.         +..    
T Consensus        78 ~~~~~~~~~~v-------~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  150 (357)
T 2uvk_A           78 SEGLTQVFNDV-------HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID  150 (357)
T ss_dssp             TTSCEEECCCE-------EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCccceeeccE-------EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchh
Confidence               11223333       44458999999999988 8999999999999999999976321000         000    


Q ss_pred             ----CccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE
Q 024009          140 ----PIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN  214 (274)
Q Consensus       140 ----~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd  214 (274)
                          .++........++++++.|| .+++|+.++++|.++... ++++..+++|||+||......      ..+++++||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~~~~iyv~GG~~~~~~------~~~~v~~~d  223 (357)
T 2uvk_A          151 KINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNKGDKTWLINGEAKPGL------RTDAVFELD  223 (357)
T ss_dssp             HHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBS-CEEEEETTEEEEECCEEETTE------ECCCEEEEE
T ss_pred             hhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCccc-ccEEEECCEEEEEeeecCCCc------ccCceEEEE
Confidence                00000000012457999999 899999999998775542 456888999999999765432      356899998


Q ss_pred             c--CCCceEEeccCCCcc--ceeeeEEEcCEEEEEccccCCC------------------CCCCCceeecCCeeeeeecc
Q 024009          215 L--NTLKWHVIGKLPYRV--KTTLAGYWNGWLYFTSGQRDKG------------------PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       215 ~--~~~~W~~~~~~p~~~--~~~~~~~~~~~l~~~GG~~~~~------------------~~~~~~~~~~~~~W~~~~~~  272 (274)
                      +  ++++|+.+.++|.+|  ..++++.++++||++||....+                  ..+..+|++.++.|+...++
T Consensus       224 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  303 (357)
T 2uvk_A          224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL  303 (357)
T ss_dssp             CC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC
T ss_pred             ecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC
Confidence            6  999999998887665  4677899999999999976432                  13567888999999976554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=8e-37  Score=257.56  Aligned_cols=218  Identities=18%  Similarity=0.286  Sum_probs=182.5

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCC-CCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS-GENRY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~-~~~~~   80 (274)
                      |+|.+|.+|++++++++||++||....+....++++++||+.+++|+.++++|.+|..|+++.++++|||+||. .....
T Consensus        84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred             CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence            57889999999999999999999864322356899999999999999999999999999999999999999998 33344


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ..++++|+       +.+++|+.++++|.+|..|+++.++++|||+||.....                 .+++++.|| 
T Consensus       164 ~~~~~~yd-------~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~  219 (315)
T 4asc_A          164 LNKMCVYD-------PKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-----------------LTSSAEVYSI  219 (315)
T ss_dssp             CCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-----------------EEEEEEEEET
T ss_pred             cceEEEEe-------CCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-----------------ccceEEEEEC
Confidence            45555554       89999999999999999999999999999999986431                 357899999 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcc--cccccCceEEEEcCCCceEEeccCCCccceeeeEE
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK--KMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY  237 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~--~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~  237 (274)
                      .+++|+.++++|.+|..  ++++..+++|||+||.......+.  ....++++++||+++++|+.+  +|.+|..+++++
T Consensus       220 ~~~~W~~~~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~  295 (315)
T 4asc_A          220 TDNKWAPFEAFPQERSS--LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATF  295 (315)
T ss_dssp             TTTEEEEECCCSSCCBS--CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEE
T ss_pred             CCCeEEECCCCCCcccc--eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEE
Confidence            89999999999999987  556888999999999854211000  011467899999999999998  677788899999


Q ss_pred             EcCEEEEEcc
Q 024009          238 WNGWLYFTSG  247 (274)
Q Consensus       238 ~~~~l~~~GG  247 (274)
                      ++++||++..
T Consensus       296 ~~~~l~v~~~  305 (315)
T 4asc_A          296 LPVRLNVLRL  305 (315)
T ss_dssp             EEEEECGGGS
T ss_pred             eCCEEEEEEe
Confidence            9999999865

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=5.7e-36  Score=252.69  Aligned_cols=216  Identities=20%  Similarity=0.353  Sum_probs=180.6

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCC-CCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE-NRY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~   80 (274)
                      |+|.+|.+|++++++++||++||..... ...++++++||+.+++|+.++++|.+|..|+++.++++||++||... ...
T Consensus        95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           95 PLPSARCLFGLGEVDDKIYVVAGKDLQT-EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             CBSSCBCSCEEEEETTEEEEEEEEBTTT-CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred             CCCccccccceEEECCEEEEEcCccCCC-CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence            5688999999999999999999986422 24578999999999999999999999999999999999999999742 223


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ..++++|       |+.+++|+.++++|.+|..|+++.++++|||+||....                 ..+++++.|| 
T Consensus       174 ~~~~~~y-------d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----------------~~~~~~~~yd~  229 (318)
T 2woz_A          174 TNRVFIY-------NPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTED-----------------GLSASVEAFDL  229 (318)
T ss_dssp             CCCEEEE-------ETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETT-----------------EEEEEEEEEET
T ss_pred             cceEEEE-------cCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCC-----------------CccceEEEEEC
Confidence            3444444       48999999999999999999999999999999997643                 1357899999 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcc--cccccCceEEEEcCCCceEEeccCCCccceeeeEE
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK--KMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY  237 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~--~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~  237 (274)
                      .+++|+.++++|.+|..  ++++..+++||++||.......+.  .....+++++||+++++|+++  +|.+|..|++++
T Consensus       230 ~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~  305 (318)
T 2woz_A          230 KTNKWEVMTEFPQERSS--ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASC  305 (318)
T ss_dssp             TTCCEEECCCCSSCCBS--CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEE
T ss_pred             CCCeEEECCCCCCcccc--eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--ccccccccccee
Confidence            89999999999999887  556889999999999865421110  011367999999999999998  889999999999


Q ss_pred             EcCEEEEEc
Q 024009          238 WNGWLYFTS  246 (274)
Q Consensus       238 ~~~~l~~~G  246 (274)
                      ++++||++.
T Consensus       306 ~~~~iyi~~  314 (318)
T 2woz_A          306 LATRLNLFK  314 (318)
T ss_dssp             EEEEEEGGG
T ss_pred             eCCEEEEEE
Confidence            999999874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=8.6e-34  Score=262.08  Aligned_cols=225  Identities=12%  Similarity=0.131  Sum_probs=184.6

Q ss_pred             CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC-C-----CCCCCCCceEEEE--CCeEEEEcCC
Q 024009            4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-P-----LPVPRYAPATQLW--RGRLHVMGGS   75 (274)
Q Consensus         4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~   75 (274)
                      |..|+++ +++++++||++||...    ..++++++||+.+++|+.++ +     +|.+|.+|+++.+  +++|||+||.
T Consensus       386 p~rr~g~-~~~~~~~iyv~GG~~~----~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~  460 (695)
T 2zwa_A          386 INRKFGD-VDVAGNDVFYMGGSNP----YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR  460 (695)
T ss_dssp             TCCBSCE-EEECSSCEEEECCBSS----SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred             CCCceeE-EEEECCEEEEECCCCC----CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence            3445554 4558999999999865    35789999999999999998 5     7899999999999  9999999998


Q ss_pred             CCCC-CCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 024009           76 GENR-YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  153 (274)
Q Consensus        76 ~~~~-~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  153 (274)
                      .... ..+++++|+       +.+++|+.++++|.+|..|+++.+ +++|||+||.+..                    .
T Consensus       461 ~~~~~~~~dv~~yd-------~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~--------------------~  513 (695)
T 2zwa_A          461 KAPHQGLSDNWIFD-------MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG--------------------P  513 (695)
T ss_dssp             SSTTCBCCCCEEEE-------TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS--------------------C
T ss_pred             CCCCCccccEEEEe-------CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC--------------------C
Confidence            6543 345555554       899999999999999999999996 9999999998754                    1


Q ss_pred             ceEEeC-CCCCeEecCC---CCCCCccceeeEEEeC---CEEEEEeccCCCCCCcccccccCceEEEEcCCCc------e
Q 024009          154 DVYMLD-DEMKWKVLPS---MPKPDSHIEFAWVLVN---NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK------W  220 (274)
Q Consensus       154 ~~~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~------W  220 (274)
                      +++.|| .+++|+.+++   +|.+|..+  +++..+   ++|||+||......     ..++++++||+.+++      |
T Consensus       514 ~v~~yd~~t~~W~~~~~~g~~p~~r~~~--~a~v~~~~~~~iyv~GG~~~~~~-----~~~~~v~~yd~~~~~w~~~~~W  586 (695)
T 2zwa_A          514 AMLLYNVTEEIFKDVTPKDEFFQNSLVS--AGLEFDPVSKQGIILGGGFMDQT-----TVSDKAIIFKYDAENATEPITV  586 (695)
T ss_dssp             SEEEEETTTTEEEECCCSSGGGGSCCBS--CEEEEETTTTEEEEECCBCTTSS-----CBCCEEEEEEECTTCSSCCEEE
T ss_pred             CEEEEECCCCceEEccCCCCCCCcccce--eEEEEeCCCCEEEEECCcCCCCC-----eeeCcEEEEEccCCccccceEE
Confidence            799999 9999999987   78888875  334444   89999999865431     146799999999999      8


Q ss_pred             EEeccC-CCccceeeeEEEc-CEEEEEccccCCC----CCCCCceeecCCeee
Q 024009          221 HVIGKL-PYRVKTTLAGYWN-GWLYFTSGQRDKG----PDDPAPRKVHGDMWR  267 (274)
Q Consensus       221 ~~~~~~-p~~~~~~~~~~~~-~~l~~~GG~~~~~----~~~~~~~~~~~~~W~  267 (274)
                      +.+.++ +.+|..|+++.++ ++||++||....+    ..+..+|++.++.|+
T Consensus       587 ~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          587 IKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            988775 5888999999999 9999999986543    455678888999998

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=3.9e-32  Score=251.06  Aligned_cols=232  Identities=14%  Similarity=0.136  Sum_probs=180.4

Q ss_pred             CCCCcCceeeEEe--CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCC
Q 024009            3 REMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENR   79 (274)
Q Consensus         3 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~   79 (274)
                      +|.+|.+|+++++  +++|||+||.....  ..++++|+||+.+++|+.++++|.+|..|+++.+ +++|||+||.....
T Consensus       436 ~p~~R~~hs~~~~~~~~~lyv~GG~~~~~--~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~  513 (695)
T 2zwa_A          436 VPVARMCHTFTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP  513 (695)
T ss_dssp             CCCCCBSCEEEEETTTTEEEEECCBSSTT--CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC
T ss_pred             CCccccceEEEEEccCCEEEEEcCCCCCC--CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC
Confidence            7899999999999  99999999987654  3678999999999999999999999999999997 99999999986543


Q ss_pred             CCCCccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeC---CEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 024009           80 YTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVD---DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  153 (274)
Q Consensus        80 ~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  153 (274)
                         ++++|       |+.+++|+.+.+   +|.+|.+|++++++   ++|||+||.....               ...++
T Consensus       514 ---~v~~y-------d~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------------~~~~~  568 (695)
T 2zwa_A          514 ---AMLLY-------NVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------------TTVSD  568 (695)
T ss_dssp             ---SEEEE-------ETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------------SCBCC
T ss_pred             ---CEEEE-------ECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------------CeeeC
Confidence               34444       489999999886   88889888877777   8999999986441               12468


Q ss_pred             ceEEeC-CCCC------eEecCCC-CCCCccceeeEEEeC-CEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          154 DVYMLD-DEMK------WKVLPSM-PKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       154 ~~~~~d-~~~~------W~~~~~~-~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      +++.|| .+++      |+.+.++ +.+|..  ++++..+ ++|||+||........    ..+++++||+.+++|+.+ 
T Consensus       569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~--~~~~~~~~~~iyv~GG~~~~~~~~----~~~~v~~yd~~t~~W~~~-  641 (695)
T 2zwa_A          569 KAIIFKYDAENATEPITVIKKLQHPLFQRYG--SQIKYITPRKLLIVGGTSPSGLFD----RTNSIISLDPLSETLTSI-  641 (695)
T ss_dssp             EEEEEEECTTCSSCCEEEEEEEECGGGCCBS--CEEEEEETTEEEEECCBCSSCCCC----TTTSEEEEETTTTEEEEC-
T ss_pred             cEEEEEccCCccccceEEEEcCCCCCCCccc--ceEEEeCCCEEEEECCccCCCCCC----CCCeEEEEECCCCeEEEe-
Confidence            899999 8888      8888776 467776  4567777 9999999986543211    366999999999999964 


Q ss_pred             cCCC--------ccceeeeEEEcC-EEEEEccccCCCCCCCCceeecCCeeeeeecc
Q 024009          225 KLPY--------RVKTTLAGYWNG-WLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       225 ~~p~--------~~~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ++|.        .+.+|+++.+++ +|||+||....-.    .-...++.|+++++.
T Consensus       642 ~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfs----fGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYG----FGSVTNVGLKLIAIA  694 (695)
T ss_dssp             CCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTT----SCEEECCCEEEEECC
T ss_pred             eccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcC----ccccccceEEEEEEc
Confidence            3332        344577777765 9999999643211    111236999998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=3.3e-28  Score=224.06  Aligned_cols=238  Identities=16%  Similarity=0.141  Sum_probs=173.7

Q ss_pred             CCCcCceeeEEe--CCEEEEEcCcCCCCC---CCCCCeeEEEECCCCCeeeCCCCCCCCCCce--EEE-ECCeEEEEcCC
Q 024009            4 EMAHSHLGMVTD--GRYIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLPPLPVPRYAPA--TQL-WRGRLHVMGGS   75 (274)
Q Consensus         4 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~--~~~-~~~~iyv~GG~   75 (274)
                      |+||..++++++  +++||++||......   ......+++||+.+++|+.++++|.+|..++  +++ .+++||++||.
T Consensus       183 ~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~  262 (656)
T 1k3i_A          183 DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN  262 (656)
T ss_dssp             ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred             cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC
Confidence            345555666666  999999999865321   1234589999999999999998888776553  444 48999999997


Q ss_pred             CCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 024009           76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  154 (274)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (274)
                      ...    ++++|+       +.+++|+.+++||.+|..|+++.+ +++|||+||.....                ..+++
T Consensus       263 ~~~----~v~~yd-------~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~----------------~~~~~  315 (656)
T 1k3i_A          263 DAK----KTSLYD-------SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG----------------VFEKN  315 (656)
T ss_dssp             STT----CEEEEE-------GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS----------------SCCCC
T ss_pred             CCC----ceEEec-------CcCCceeECCCCCccccccceEEecCCeEEEEeCcccCC----------------ccccc
Confidence            532    344444       889999999999999999999998 99999999953221                12467


Q ss_pred             eEEeC-CCCCeEecC-----CCCCCCc-----------------------------------------------------
Q 024009          155 VYMLD-DEMKWKVLP-----SMPKPDS-----------------------------------------------------  175 (274)
Q Consensus       155 ~~~~d-~~~~W~~~~-----~~~~~~~-----------------------------------------------------  175 (274)
                      ++.|| .+++|+.++     +++..+.                                                     
T Consensus       316 ~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~  395 (656)
T 1k3i_A          316 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA  395 (656)
T ss_dssp             EEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEEC
T ss_pred             ceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccC
Confidence            88888 788888863     3332211                                                     


Q ss_pred             --cceeeEE---EeCCEEEEEeccCCCCCCcccccccC---ceEEEEcCCCceEEec--cCCCccceeeeEEE-cCEEEE
Q 024009          176 --HIEFAWV---LVNNSIVIVGGTTEKHPTTKKMVLVG---EIFQFNLNTLKWHVIG--KLPYRVKTTLAGYW-NGWLYF  244 (274)
Q Consensus       176 --~~~~~~~---~~~~~l~v~GG~~~~~~~~~~~~~~~---~i~~yd~~~~~W~~~~--~~p~~~~~~~~~~~-~~~l~~  244 (274)
                        ....+++   ..+++||++||........    .++   .+++||+.+++|+++.  +||.+|..++++.+ +++||+
T Consensus       396 ~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~----~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v  471 (656)
T 1k3i_A          396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSD----ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFI  471 (656)
T ss_dssp             CCCBTCEEEEEETTTTEEEEECCBSSSSSSB----CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEE
T ss_pred             CCCCCCceEeccCCCCeEEEEeCCCCCCCCC----cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEE
Confidence              0011223   2589999999975321100    133   7899999999999986  99999999998888 999999


Q ss_pred             EccccCCC-------CCCCCceeecCCeeeeeecc
Q 024009          245 TSGQRDKG-------PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       245 ~GG~~~~~-------~~~~~~~~~~~~~W~~~~~~  272 (274)
                      +||.....       ..+.++|++.++.|+...++
T Consensus       472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          472 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             ECCcccCcCcCCCCcccceEEEcCCCCceeecCCC
Confidence            99976421       45678899999999875543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.96  E-value=1.7e-27  Score=219.26  Aligned_cols=215  Identities=17%  Similarity=0.216  Sum_probs=158.5

Q ss_pred             CCCcCce--eeE-EeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCC-CCC
Q 024009            4 EMAHSHL--GMV-TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGS-GEN   78 (274)
Q Consensus         4 ~~~r~~~--~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~-~~~   78 (274)
                      |.+|..+  +++ ..+++||++||...       .++++||+.+++|+.+++||.+|.+|+++++ +++|||+||. ...
T Consensus       238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~-------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~  310 (656)
T 1k3i_A          238 VTKHDMFCPGISMDGNGQIVVTGGNDA-------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG  310 (656)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSST-------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS
T ss_pred             CCCCCCccccccCCCCCCEEEeCCCCC-------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCC
Confidence            3445444  344 45899999999753       2699999999999999999999999999999 9999999994 444


Q ss_pred             CCCCCccceEeeeecCCCCCCceeec-----cCCCCCCC-----------------------------------------
Q 024009           79 RYTPEVDHWSLAVKDGKPLEKEWRTE-----IPIPRGGP-----------------------------------------  112 (274)
Q Consensus        79 ~~~~~~~~~~~~~~~~d~~~~~W~~~-----~~~p~~~~-----------------------------------------  112 (274)
                      ....++++|+       +.+++|+.+     .+++..+.                                         
T Consensus       311 ~~~~~~e~yd-------~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          311 VFEKNGEVYS-------PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             SCCCCEEEEE-------TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cccccceEeC-------CCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence            4445555555       788899886     33333211                                         


Q ss_pred             ----------------cceeE---EeCCEEEEEccCCCCCCCCCCCCccccccCceeecC---ceEEeC-CCCCeEecC-
Q 024009          113 ----------------HRACV---VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD---DVYMLD-DEMKWKVLP-  168 (274)
Q Consensus       113 ----------------~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d-~~~~W~~~~-  168 (274)
                                      .+.++   ..+++||++||.....              ....++   .++.|| .+++|+.+. 
T Consensus       384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~--------------~~~~~~~~~~v~~yd~~~~~W~~~~~  449 (656)
T 1k3i_A          384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ--------------DSDATTNAHIITLGEPGTSPNTVFAS  449 (656)
T ss_dssp             EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS--------------SSBCCCCEEEEECCSTTSCCEEEECT
T ss_pred             cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC--------------CCCcCCcceEEEcCCCCCCCeeEEcc
Confidence                            12222   2478999999864320              001123   678888 889999886 


Q ss_pred             -CCCCCCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE--cCEEEE
Q 024009          169 -SMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW--NGWLYF  244 (274)
Q Consensus       169 -~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~~  244 (274)
                       +||.+|..+  +++.+ +++|||+||.......+ ....+.++++||+.+++|+.++++|.+|..|+++.+  +++||+
T Consensus       450 ~~mp~~R~~~--~~~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v  526 (656)
T 1k3i_A          450 NGLYFARTFH--TSVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFN  526 (656)
T ss_dssp             TCCSSCCBSC--EEEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEE
T ss_pred             CCCCCCcccC--CeEECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEe
Confidence             899998874  44555 99999999976432111 011467999999999999999999999999988888  999999


Q ss_pred             Ecccc
Q 024009          245 TSGQR  249 (274)
Q Consensus       245 ~GG~~  249 (274)
                      +||..
T Consensus       527 ~GG~~  531 (656)
T 1k3i_A          527 GGGGL  531 (656)
T ss_dssp             EECCC
T ss_pred             cCCCC
Confidence            99954

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.11  E-value=0.0011  Score=52.65  Aligned_cols=189  Identities=17%  Similarity=0.160  Sum_probs=116.1

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      |.+..-+.+++...++.+|+-.|.++      .+.+.++|+.+++-...-+++...+...++..+++||+.....     
T Consensus        16 phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----   84 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----   84 (243)
T ss_dssp             ECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----
T ss_pred             CCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----
Confidence            55555567788888999999998654      3678999999998776666666667777888899999986543     


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  160 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  160 (274)
                      ..+.+|+       +.+.  +.+...+.+..+-+++.-+++||+.-| +                      ..++.+| .
T Consensus        85 ~~v~v~D-------~~tl--~~~~ti~~~~~Gwglt~dg~~L~vSdg-s----------------------~~l~~iDp~  132 (243)
T 3mbr_X           85 HEGFVYD-------LATL--TPRARFRYPGEGWALTSDDSHLYMSDG-T----------------------AVIRKLDPD  132 (243)
T ss_dssp             SEEEEEE-------TTTT--EEEEEEECSSCCCEEEECSSCEEEECS-S----------------------SEEEEECTT
T ss_pred             CEEEEEE-------CCcC--cEEEEEeCCCCceEEeeCCCEEEEECC-C----------------------CeEEEEeCC
Confidence            3334444       3332  333333333344567766778999866 2                      4688888 5


Q ss_pred             CCCeE-ecC--CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE---eccCCC------
Q 024009          161 EMKWK-VLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV---IGKLPY------  228 (274)
Q Consensus       161 ~~~W~-~~~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~---~~~~p~------  228 (274)
                      +.+-. .+.  .-+.+.... -.+...+++||+.--.            .++|.+.|+++.+-..   ++.+..      
T Consensus       133 t~~~~~~I~V~~~g~~~~~l-NeLe~~~G~lyanvw~------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~  199 (243)
T 3mbr_X          133 TLQQVGSIKVTAGGRPLDNL-NELEWVNGELLANVWL------------TSRIARIDPASGKVVAWIDLQALVPDADALT  199 (243)
T ss_dssp             TCCEEEEEECEETTEECCCE-EEEEEETTEEEEEETT------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred             CCeEEEEEEEccCCcccccc-eeeEEeCCEEEEEECC------------CCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence            55432 222  112222221 1234458898865422            3489999999997543   233311      


Q ss_pred             -cc--ceeeeEEE--cCEEEEEc
Q 024009          229 -RV--KTTLAGYW--NGWLYFTS  246 (274)
Q Consensus       229 -~~--~~~~~~~~--~~~l~~~G  246 (274)
                       +.  ..-+++..  .+++||.|
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCcCCceEEEEEcCCCCEEEEEC
Confidence             11  22444444  47888776

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.84  E-value=0.0017  Score=52.12  Aligned_cols=160  Identities=15%  Similarity=0.118  Sum_probs=97.4

Q ss_pred             CceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccce
Q 024009            8 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW   87 (274)
Q Consensus         8 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~   87 (274)
                      +..++...++.+|+-.|.++      .+.+.++|+++++-..--+++...+...++..+++||+.....     ..+.+|
T Consensus        44 ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-----~~v~v~  112 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-----GLGFVW  112 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----SEEEEE
T ss_pred             ccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-----CEEEEE
Confidence            34666777899999988643      3678999999998665555555455566778899999986533     333444


Q ss_pred             EeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeE-
Q 024009           88 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK-  165 (274)
Q Consensus        88 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~-  165 (274)
                      +       +.+.+  .+..++....+.+++.-++.||+.-| +                      +.++.+| .+.+-. 
T Consensus       113 D-------~~t~~--~~~ti~~~~eG~glt~dg~~L~~SdG-s----------------------~~i~~iDp~T~~v~~  160 (262)
T 3nol_A          113 N-------IRNLR--QVRSFNYDGEGWGLTHNDQYLIMSDG-T----------------------PVLRFLDPESLTPVR  160 (262)
T ss_dssp             E-------TTTCC--EEEEEECSSCCCCEEECSSCEEECCS-S----------------------SEEEEECTTTCSEEE
T ss_pred             E-------CccCc--EEEEEECCCCceEEecCCCEEEEECC-C----------------------CeEEEEcCCCCeEEE
Confidence            4       43333  22233333344466666677888765 2                      4688888 555432 


Q ss_pred             ecCC--CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009          166 VLPS--MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI  223 (274)
Q Consensus       166 ~~~~--~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~  223 (274)
                      .++-  -..+..... .+...+++||+.--.            .++|.+.|+++.+-...
T Consensus       161 ~I~V~~~g~~~~~lN-ELe~~~G~lyan~w~------------~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          161 TITVTAHGEELPELN-ELEWVDGEIFANVWQ------------TNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             EEECEETTEECCCEE-EEEEETTEEEEEETT------------SSEEEEECTTTCBEEEE
T ss_pred             EEEeccCCccccccc-eeEEECCEEEEEEcc------------CCeEEEEECCCCcEEEE
Confidence            2221  112222111 133458898865322            34899999999986543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.54  E-value=0.013  Score=47.16  Aligned_cols=184  Identities=12%  Similarity=0.004  Sum_probs=103.3

Q ss_pred             ceeeEEeC-CEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccce
Q 024009            9 HLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW   87 (274)
Q Consensus         9 ~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~   87 (274)
                      -+++...+ +.+|+..|..+      -+.+.++|+.+++-...-+++...+...++..+++||+..-..     ..+.++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~-----~~v~vi   91 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK-----NIGFIY   91 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC-----SEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC-----CEEEEE
Confidence            35666665 89999877432      3779999999998655444444444556677788999985422     334444


Q ss_pred             EeeeecCCCCCCceeeccCCCCC-CCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCe-
Q 024009           88 SLAVKDGKPLEKEWRTEIPIPRG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW-  164 (274)
Q Consensus        88 ~~~~~~~d~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W-  164 (274)
                      +       +.+.  +.+..++.+ ..+.+++.-++++|+..| +                      +.++.+| .+.+- 
T Consensus        92 D-------~~t~--~v~~~i~~g~~~g~glt~Dg~~l~vs~g-s----------------------~~l~viD~~t~~v~  139 (266)
T 2iwa_A           92 D-------RRTL--SNIKNFTHQMKDGWGLATDGKILYGSDG-T----------------------SILYEIDPHTFKLI  139 (266)
T ss_dssp             E-------TTTT--EEEEEEECCSSSCCEEEECSSSEEEECS-S----------------------SEEEEECTTTCCEE
T ss_pred             E-------CCCC--cEEEEEECCCCCeEEEEECCCEEEEECC-C----------------------CeEEEEECCCCcEE
Confidence            4       3333  222222222 333455555677998765 1                      4688887 55442 


Q ss_pred             EecCC--CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCC------------cc
Q 024009          165 KVLPS--MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY------------RV  230 (274)
Q Consensus       165 ~~~~~--~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~------------~~  230 (274)
                      ..++-  -+.+.... -.+...++++|+.-..            .++|.+.|+.+.+-...-+++.            .-
T Consensus       140 ~~I~Vg~~~~p~~~~-nele~~dg~lyvn~~~------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~  206 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRL-NELEYINGEVWANIWQ------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDID  206 (266)
T ss_dssp             EEEECEETTEECCCE-EEEEEETTEEEEEETT------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCC
T ss_pred             EEEEECCCCcccccc-eeEEEECCEEEEecCC------------CCeEEEEECCCCcEEEEEECCCcccccccccccccC
Confidence            22221  12222111 1223448888876432            3489999999987543222210            01


Q ss_pred             ceeeeEEE--cCEEEEEccc
Q 024009          231 KTTLAGYW--NGWLYFTSGQ  248 (274)
Q Consensus       231 ~~~~~~~~--~~~l~~~GG~  248 (274)
                      ...+++..  ++++|+.|+.
T Consensus       207 v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          207 VLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             CEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCC
Confidence            22445544  3588888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.44  E-value=0.0049  Score=49.49  Aligned_cols=159  Identities=14%  Similarity=0.036  Sum_probs=95.3

Q ss_pred             CCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCc
Q 024009            5 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEV   84 (274)
Q Consensus         5 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~   84 (274)
                      ..-+..++...++.+|+..|.++        .+.++|+++++-..-- ++...+...++..+++||+.....     ..+
T Consensus        53 ~~~ftqGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v  118 (268)
T 3nok_A           53 TNAFTQGLVFHQGHFFESTGHQG--------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLL  118 (268)
T ss_dssp             TTCCEEEEEEETTEEEEEETTTT--------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEE
T ss_pred             CccccceEEEECCEEEEEcCCCC--------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEE
Confidence            33345677778999999988542        2889999998754433 554444556777799999986533     333


Q ss_pred             cceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCC
Q 024009           85 DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK  163 (274)
Q Consensus        85 ~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~  163 (274)
                      .+|+       +.+.+  .+...+....+.+++.-+++||+.-| +                      +.++.+| .+.+
T Consensus       119 ~V~D-------~~Tl~--~~~ti~~~~eGwGLt~Dg~~L~vSdG-s----------------------~~l~~iDp~T~~  166 (268)
T 3nok_A          119 FTWS-------GMPPQ--RERTTRYSGEGWGLCYWNGKLVRSDG-G----------------------TMLTFHEPDGFA  166 (268)
T ss_dssp             EEEE-------TTTTE--EEEEEECSSCCCCEEEETTEEEEECS-S----------------------SEEEEECTTTCC
T ss_pred             EEEE-------CCcCc--EEEEEeCCCceeEEecCCCEEEEECC-C----------------------CEEEEEcCCCCe
Confidence            4444       43333  22222223334577777888999876 2                      4688888 5554


Q ss_pred             eE-ecC--CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          164 WK-VLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       164 W~-~~~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      -. .+.  .-+.+.... ..+...+++||+.--.            .++|.+.|+++.+-..
T Consensus       167 v~~~I~V~~~g~~v~~l-NeLe~~dG~lyanvw~------------s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          167 LVGAVQVKLRGQPVELI-NELECANGVIYANIWH------------SSDVLEIDPATGTVVG  215 (268)
T ss_dssp             EEEEEECEETTEECCCE-EEEEEETTEEEEEETT------------CSEEEEECTTTCBEEE
T ss_pred             EEEEEEeCCCCcccccc-cccEEeCCEEEEEECC------------CCeEEEEeCCCCcEEE
Confidence            32 222  112222111 1234458898864321            3489999999997544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.29  E-value=0.056  Score=44.68  Aligned_cols=191  Identities=13%  Similarity=0.028  Sum_probs=100.8

Q ss_pred             CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCe-eeCCCCCCCCCCceEEE-ECCeEEEEcCCCCCCCCCC
Q 024009            6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW-QDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPE   83 (274)
Q Consensus         6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~   83 (274)
                      +.....++..++++|+....        ...+.++|+.+.+- .+++..   ..-..++. -++++|+....     ...
T Consensus        43 g~~~~~i~~~~~~lyv~~~~--------~~~v~viD~~t~~~~~~i~~~---~~p~~i~~~~~g~lyv~~~~-----~~~  106 (328)
T 3dsm_A           43 GDVAQSMVIRDGIGWIVVNN--------SHVIFAIDINTFKEVGRITGF---TSPRYIHFLSDEKAYVTQIW-----DYR  106 (328)
T ss_dssp             BSCEEEEEEETTEEEEEEGG--------GTEEEEEETTTCCEEEEEECC---SSEEEEEEEETTEEEEEEBS-----CSE
T ss_pred             CccceEEEEECCEEEEEEcC--------CCEEEEEECcccEEEEEcCCC---CCCcEEEEeCCCeEEEEECC-----CCe
Confidence            34445667789999999642        26789999998875 334322   22334444 57899998632     233


Q ss_pred             ccceEeeeecCCCCCCceeeccCCCCC----CCcceeEEeCCEEEEEcc-CCCCCCCCCCCCccccccCceeecCceEEe
Q 024009           84 VDHWSLAVKDGKPLEKEWRTEIPIPRG----GPHRACVVVDDRLLVIGG-QEGDFMAKPGSPIFKCSRRNEVVYDDVYML  158 (274)
Q Consensus        84 ~~~~~~~~~~~d~~~~~W~~~~~~p~~----~~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (274)
                      +.+++       +.+.+-...-++...    ..-..++..+++||+..- ..                      ..+..+
T Consensus       107 v~~iD-------~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~----------------------~~v~vi  157 (328)
T 3dsm_A          107 IFIIN-------PKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQ----------------------NRILKI  157 (328)
T ss_dssp             EEEEE-------TTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTC----------------------CEEEEE
T ss_pred             EEEEE-------CCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCC----------------------CEEEEE
Confidence            44444       555543321111210    011244457889999852 11                      357777


Q ss_pred             C-CCCCeEe-cCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeE
Q 024009          159 D-DEMKWKV-LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG  236 (274)
Q Consensus       159 d-~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~  236 (274)
                      | .+.+... ++....+.    .....-++++|+............  .-.+.++++|+++.+....-.++.......++
T Consensus       158 D~~t~~~~~~i~~g~~p~----~i~~~~dG~l~v~~~~~~~~~~~~--~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          158 DTETDKVVDELTIGIQPT----SLVMDKYNKMWTITDGGYEGSPYG--YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             ETTTTEEEEEEECSSCBC----CCEECTTSEEEEEBCCBCTTCSSC--BCCCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             ECCCCeEEEEEEcCCCcc----ceEEcCCCCEEEEECCCccCCccc--cCCceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence            7 5555432 22212221    122344688888764321111000  00247999999998876433444333333444


Q ss_pred             EE--cCEEEEEcc
Q 024009          237 YW--NGWLYFTSG  247 (274)
Q Consensus       237 ~~--~~~l~~~GG  247 (274)
                      ..  ++.||+..+
T Consensus       232 ~~~d~~~lyv~~~  244 (328)
T 3dsm_A          232 LNGTRDTLYWINN  244 (328)
T ss_dssp             ECTTSCEEEEESS
T ss_pred             EecCCCEEEEEcc
Confidence            43  456776643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.10  E-value=0.021  Score=45.26  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=86.5

Q ss_pred             CCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCC
Q 024009           56 PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMA  135 (274)
Q Consensus        56 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~  135 (274)
                      .-+.+.+.+.++.||+..|..+.   .++.+++       +.+.+-....+++...++.+++..+++||+....+     
T Consensus        20 ~~ftqGL~~~~~~LyestG~~g~---S~v~~vD-------~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~-----   84 (243)
T 3mbr_X           20 TAFTEGLFYLRGHLYESTGETGR---SSVRKVD-------LETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN-----   84 (243)
T ss_dssp             TCCEEEEEEETTEEEEEECCTTS---CEEEEEE-------TTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-----
T ss_pred             ccccccEEEECCEEEEECCCCCC---ceEEEEE-------CCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-----
Confidence            34556778889999999886432   3344444       66666655556676666778888999999997654     


Q ss_pred             CCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE
Q 024009          136 KPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN  214 (274)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd  214 (274)
                                       ..++.|| .+.+-  +...+.+..+  -+++.-+++||+.-| +            +.++.+|
T Consensus        85 -----------------~~v~v~D~~tl~~--~~ti~~~~~G--wglt~dg~~L~vSdg-s------------~~l~~iD  130 (243)
T 3mbr_X           85 -----------------HEGFVYDLATLTP--RARFRYPGEG--WALTSDDSHLYMSDG-T------------AVIRKLD  130 (243)
T ss_dssp             -----------------SEEEEEETTTTEE--EEEEECSSCC--CEEEECSSCEEEECS-S------------SEEEEEC
T ss_pred             -----------------CEEEEEECCcCcE--EEEEeCCCCc--eEEeeCCCEEEEECC-C------------CeEEEEe
Confidence                             4688887 44443  2222222233  344556678888764 1            2799999


Q ss_pred             cCCCceEE-e--ccCCCccc-eeeeEEEcCEEEEE
Q 024009          215 LNTLKWHV-I--GKLPYRVK-TTLAGYWNGWLYFT  245 (274)
Q Consensus       215 ~~~~~W~~-~--~~~p~~~~-~~~~~~~~~~l~~~  245 (274)
                      +++.+-.. +  ..-+.+.. .--+...+++||+-
T Consensus       131 p~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan  165 (243)
T 3mbr_X          131 PDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN  165 (243)
T ss_dssp             TTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred             CCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence            99987543 2  22222221 12344557777743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.83  E-value=0.17  Score=42.33  Aligned_cols=177  Identities=15%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             eeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCC-------CCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009           11 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLP-------VPRYAPATQLWRGRLHVMGGSGENRYT   81 (274)
Q Consensus        11 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~-------~~r~~~~~~~~~~~iyv~GG~~~~~~~   81 (274)
                      +-++.++.+|+...         ...++.||..+++  |+.-.+..       ........+..++.||+....      
T Consensus        48 ~p~v~~~~v~~~~~---------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~------  112 (376)
T 3q7m_A           48 HPALADNVVYAADR---------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK------  112 (376)
T ss_dssp             CCEEETTEEEEECT---------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT------
T ss_pred             ccEEECCEEEEEcC---------CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC------
Confidence            56677999998843         2478999998765  76543211       112223344558888886431      


Q ss_pred             CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009           82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  160 (274)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  160 (274)
                      ..+..++.     +..+..|+....-..   ....+..++.||+....                       ..++.+| .
T Consensus       113 g~l~a~d~-----~tG~~~W~~~~~~~~---~~~p~~~~~~v~v~~~~-----------------------g~l~~~d~~  161 (376)
T 3q7m_A          113 AQVYALNT-----SDGTVAWQTKVAGEA---LSRPVVSDGLVLIHTSN-----------------------GQLQALNEA  161 (376)
T ss_dssp             SEEEEEET-----TTCCEEEEEECSSCC---CSCCEEETTEEEEECTT-----------------------SEEEEEETT
T ss_pred             CEEEEEEC-----CCCCEEEEEeCCCce---EcCCEEECCEEEEEcCC-----------------------CeEEEEECC
Confidence            22333331     123445766333211   12345668888875431                       3578887 4


Q ss_pred             CC--CeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCCcc------
Q 024009          161 EM--KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPYRV------  230 (274)
Q Consensus       161 ~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~------  230 (274)
                      +.  .|+.-...+........+.+..++.+|+.. .            -..++.+|+++.+  |+.-...|...      
T Consensus       162 tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~-~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  228 (376)
T 3q7m_A          162 DGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGG-D------------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRL  228 (376)
T ss_dssp             TCCEEEEEECCC-----CCCCCCEEETTEEEECC-T------------TTEEEEEETTTCCEEEEEECCC----------
T ss_pred             CCcEEEEEeCCCCceeecCCCCcEEECCEEEEEc-C------------CCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence            44  487654332211110122355577776632 1            1269999987664  66532222111      


Q ss_pred             --ceeeeEEEcCEEEEEc
Q 024009          231 --KTTLAGYWNGWLYFTS  246 (274)
Q Consensus       231 --~~~~~~~~~~~l~~~G  246 (274)
                        .....+..++.+|+.+
T Consensus       229 ~~~~~~p~~~~~~v~~~~  246 (376)
T 3q7m_A          229 SDVDTTPVVVNGVVFALA  246 (376)
T ss_dssp             -CCCCCCEEETTEEEEEC
T ss_pred             cccCCCcEEECCEEEEEe
Confidence              1133344577887764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.39  E-value=0.22  Score=41.03  Aligned_cols=163  Identities=9%  Similarity=-0.032  Sum_probs=87.0

Q ss_pred             CCeeEEEECCCCCeeeCC-----CCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCce-eeccCC
Q 024009           34 TAHTFVLDTETKKWQDLP-----PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW-RTEIPI  107 (274)
Q Consensus        34 ~~~~~~~d~~~~~W~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~  107 (274)
                      ...+..+|+.++++...-     ..+.......++..++++|+.....     ..+.+++       +.+.+- ..++..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~-----~~v~viD-------~~t~~~~~~i~~~   83 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNS-----HVIFAID-------INTFKEVGRITGF   83 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGG-----TEEEEEE-------TTTCCEEEEEECC
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCC-----CEEEEEE-------CcccEEEEEcCCC
Confidence            367899999998876531     1122233455666799999986422     3344444       444443 223222


Q ss_pred             CCCCCcceeEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCC--CCccceeeEEE
Q 024009          108 PRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK--PDSHIEFAWVL  183 (274)
Q Consensus       108 p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~--~~~~~~~~~~~  183 (274)
                      ..+   ..++. .++++|+.....                      ..++.+| .+.+-...-+...  ........++.
T Consensus        84 ~~p---~~i~~~~~g~lyv~~~~~----------------------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~  138 (328)
T 3dsm_A           84 TSP---RYIHFLSDEKAYVTQIWD----------------------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ  138 (328)
T ss_dssp             SSE---EEEEEEETTEEEEEEBSC----------------------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE
T ss_pred             CCC---cEEEEeCCCeEEEEECCC----------------------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE
Confidence            222   23444 678999987432                      3577777 5554322111111  00001123445


Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE-cCEEEEEc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW-NGWLYFTS  246 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~l~~~G  246 (274)
                      .++++|+..-.           .-+.|.++|+++.+....-+.  ......+... ++++|+..
T Consensus       139 ~~~~lyv~~~~-----------~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          139 YGKYVYVNCWS-----------YQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTIT  189 (328)
T ss_dssp             ETTEEEEEECT-----------TCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEB
T ss_pred             ECCEEEEEcCC-----------CCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEE
Confidence            78999998521           022799999999876542121  1111223322 57777764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.28  E-value=0.048  Score=43.67  Aligned_cols=116  Identities=7%  Similarity=0.024  Sum_probs=71.9

Q ss_pred             CCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCC
Q 024009           58 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP  137 (274)
Q Consensus        58 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  137 (274)
                      +...+...++.||+..|..+.   .++.++       |+.+.+-....+++...++.+++..+++||+....+       
T Consensus        44 ftqGL~~~~~~LyestG~~g~---S~v~~v-------D~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-------  106 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNGR---SSIRKV-------DIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-------  106 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETTE---EEEEEE-------CTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-------
T ss_pred             ccceEEEECCEEEEECCCCCC---ceEEEE-------ECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-------
Confidence            345666668899998885432   223333       366666555445665556667888999999997654       


Q ss_pred             CCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcC
Q 024009          138 GSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  216 (274)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~  216 (274)
                                     +.++.|| .+.+-.  ...+.+..+  .+++.-++++|+.-| +            +.++++|++
T Consensus       107 ---------------~~v~v~D~~t~~~~--~ti~~~~eG--~glt~dg~~L~~SdG-s------------~~i~~iDp~  154 (262)
T 3nol_A          107 ---------------GLGFVWNIRNLRQV--RSFNYDGEG--WGLTHNDQYLIMSDG-T------------PVLRFLDPE  154 (262)
T ss_dssp             ---------------SEEEEEETTTCCEE--EEEECSSCC--CCEEECSSCEEECCS-S------------SEEEEECTT
T ss_pred             ---------------CEEEEEECccCcEE--EEEECCCCc--eEEecCCCEEEEECC-C------------CeEEEEcCC
Confidence                           4688888 555432  222222232  334555667777654 1            279999999


Q ss_pred             CCceEE
Q 024009          217 TLKWHV  222 (274)
Q Consensus       217 ~~~W~~  222 (274)
                      +.+-..
T Consensus       155 T~~v~~  160 (262)
T 3nol_A          155 SLTPVR  160 (262)
T ss_dssp             TCSEEE
T ss_pred             CCeEEE
Confidence            887543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.10  E-value=0.13  Score=41.30  Aligned_cols=135  Identities=9%  Similarity=-0.027  Sum_probs=79.1

Q ss_pred             CCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCC
Q 024009           58 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP  137 (274)
Q Consensus        58 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~  137 (274)
                      +...+...++.||+..|..+.     +.++       |+.+.+-.... ++...++.+++..+++||+....+       
T Consensus        56 ftqGL~~~~~~Ly~stG~~g~-----v~~i-------D~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-------  115 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQGT-----LRQL-------SLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-------  115 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTTE-----EEEC-------CSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-------
T ss_pred             ccceEEEECCEEEEEcCCCCE-----EEEE-------ECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-------
Confidence            335666678999999886532     3333       35555443322 555555567888899999996654       


Q ss_pred             CCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcC
Q 024009          138 GSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  216 (274)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~  216 (274)
                                     ..++.|| .+.+-  +...+.+..+  .+++.-+++||+.-|             .+.++.+|++
T Consensus       116 ---------------~~v~V~D~~Tl~~--~~ti~~~~eG--wGLt~Dg~~L~vSdG-------------s~~l~~iDp~  163 (268)
T 3nok_A          116 ---------------GLLFTWSGMPPQR--ERTTRYSGEG--WGLCYWNGKLVRSDG-------------GTMLTFHEPD  163 (268)
T ss_dssp             ---------------CEEEEEETTTTEE--EEEEECSSCC--CCEEEETTEEEEECS-------------SSEEEEECTT
T ss_pred             ---------------CEEEEEECCcCcE--EEEEeCCCce--eEEecCCCEEEEECC-------------CCEEEEEcCC
Confidence                           4688887 55443  2222222222  344666788888864             1279999999


Q ss_pred             CCceEE-e--ccCCCccc-eeeeEEEcCEEEE
Q 024009          217 TLKWHV-I--GKLPYRVK-TTLAGYWNGWLYF  244 (274)
Q Consensus       217 ~~~W~~-~--~~~p~~~~-~~~~~~~~~~l~~  244 (274)
                      +.+-.. +  ..-+.+.. .-.+...+++||+
T Consensus       164 T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lya  195 (268)
T 3nok_A          164 GFALVGAVQVKLRGQPVELINELECANGVIYA  195 (268)
T ss_dssp             TCCEEEEEECEETTEECCCEEEEEEETTEEEE
T ss_pred             CCeEEEEEEeCCCCcccccccccEEeCCEEEE
Confidence            987543 2  12122211 1224455778774

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.85  E-value=0.051  Score=45.53  Aligned_cols=15  Identities=13%  Similarity=-0.166  Sum_probs=11.7

Q ss_pred             ceEEEEcCCCceEEe
Q 024009          209 EIFQFNLNTLKWHVI  223 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~  223 (274)
                      .++.||+.+.+....
T Consensus       139 ~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A          139 TVSVINTVTKAVINT  153 (391)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCcEEEE
Confidence            799999988876543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.24  E-value=0.41  Score=39.48  Aligned_cols=60  Identities=13%  Similarity=0.107  Sum_probs=31.6

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCC--CCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP--RYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++++++.||.+        ..+.++|..+++|.....+...  ..-.+++.. +++.++.|+.+     ..+..|+
T Consensus        27 ~g~~las~~~D--------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~   89 (345)
T 3fm0_A           27 AGTLLASCGGD--------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWK   89 (345)
T ss_dssp             TSSCEEEEETT--------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CCCEEEEEcCC--------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEE
Confidence            56667777642        3467778777776533221111  111222222 56777777754     3455565

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.19  E-value=1.1  Score=37.16  Aligned_cols=172  Identities=16%  Similarity=0.149  Sum_probs=90.0

Q ss_pred             eeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCC--------CCceEEEECCeEEEEcCCCCCC
Q 024009           10 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENR   79 (274)
Q Consensus        10 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~   79 (274)
                      .+.++.++.+|+. ..        -..+..+|+.+++  |+.-...+...        .....+..++.+|+.+. .   
T Consensus       182 ~~~~~~~~~v~~g-~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~---  248 (376)
T 3q7m_A          182 SAPTTAFGAAVVG-GD--------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-N---  248 (376)
T ss_dssp             CCCEEETTEEEEC-CT--------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-T---
T ss_pred             CCcEEECCEEEEE-cC--------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-C---
Confidence            3445557776663 21        2468899998764  76643322111        22344455788888642 1   


Q ss_pred             CCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009           80 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  159 (274)
Q Consensus        80 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  159 (274)
                        ..+..++.     ...+..|+....  .   ....+..++.||+....                       ..++.+|
T Consensus       249 --g~l~~~d~-----~tG~~~w~~~~~--~---~~~~~~~~~~l~~~~~~-----------------------g~l~~~d  293 (376)
T 3q7m_A          249 --GNLTALDL-----RSGQIMWKRELG--S---VNDFIVDGNRIYLVDQN-----------------------DRVMALT  293 (376)
T ss_dssp             --SCEEEEET-----TTCCEEEEECCC--C---EEEEEEETTEEEEEETT-----------------------CCEEEEE
T ss_pred             --cEEEEEEC-----CCCcEEeeccCC--C---CCCceEECCEEEEEcCC-----------------------CeEEEEE
Confidence              22333331     122335765321  1   23456678888887531                       3577777


Q ss_pred             -CCC--CeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeE
Q 024009          160 -DEM--KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG  236 (274)
Q Consensus       160 -~~~--~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~  236 (274)
                       .+.  .|+.-. +.....   .+.+..++.||+...             ...++++|+++.+-....+++........+
T Consensus       294 ~~tG~~~w~~~~-~~~~~~---~~~~~~~~~l~v~~~-------------~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~  356 (376)
T 3q7m_A          294 IDGGVTLWTQSD-LLHRLL---TSPVLYNGNLVVGDS-------------EGYLHWINVEDGRFVAQQKVDSSGFQTEPV  356 (376)
T ss_dssp             TTTCCEEEEECT-TTTSCC---CCCEEETTEEEEECT-------------TSEEEEEETTTCCEEEEEECCTTCBCSCCE
T ss_pred             CCCCcEEEeecc-cCCCcc---cCCEEECCEEEEEeC-------------CCeEEEEECCCCcEEEEEecCCCcceeCCE
Confidence             444  476542 111111   223567888887642             126999999888633222332222233444


Q ss_pred             EEcCEEEEEc
Q 024009          237 YWNGWLYFTS  246 (274)
Q Consensus       237 ~~~~~l~~~G  246 (274)
                      ..++.||+..
T Consensus       357 ~~~~~l~v~~  366 (376)
T 3q7m_A          357 AADGKLLIQA  366 (376)
T ss_dssp             EETTEEEEEB
T ss_pred             EECCEEEEEe
Confidence            5688888764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=95.18  E-value=0.76  Score=37.69  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=35.3

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCC-ceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++++++.|+.        -..+.+||..+.+++.+..+...... .+++.. ++++++.|+.+     ..+..|+
T Consensus        19 ~~~~l~~~~~--------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd   80 (372)
T 1k8k_C           19 DRTQIAICPN--------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT   80 (372)
T ss_dssp             TSSEEEEECS--------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE
T ss_pred             CCCEEEEEeC--------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEE
Confidence            5667777653        25688999988876665544322222 223333 56777777644     3456666

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.53  Score=38.65  Aligned_cols=95  Identities=9%  Similarity=0.075  Sum_probs=46.3

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--C--CeEEEEcCCCCCCCCCCccceEeee
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSGENRYTPEVDHWSLAV   91 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~~   91 (274)
                      +++.++.|+.+        ..+.++|....++..+..+......-..+.+  +  +.+++.|+.+     ..+..|+   
T Consensus        22 ~~~~l~~~~~d--------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd---   85 (379)
T 3jrp_A           22 YGKRLATCSSD--------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWK---   85 (379)
T ss_dssp             SSSEEEEEETT--------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEE---
T ss_pred             CCCEEEEEECC--------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEE---
Confidence            45566666542        3467777776666554433322222222333  2  6777777654     4466666   


Q ss_pred             ecCCCCCCceeeccCCCCCCCc-ceeEEe-C--CEEEEEccCC
Q 024009           92 KDGKPLEKEWRTEIPIPRGGPH-RACVVV-D--DRLLVIGGQE  130 (274)
Q Consensus        92 ~~~d~~~~~W~~~~~~p~~~~~-~~~~~~-~--~~iyv~GG~~  130 (274)
                          ..+.+|..+..+...... ..++.. +  +.+++.|+.+
T Consensus        86 ----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           86 ----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             ----EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ----cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence                345555444333221111 122222 2  5566666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.98  E-value=0.78  Score=36.77  Aligned_cols=139  Identities=9%  Similarity=0.040  Sum_probs=77.2

Q ss_pred             ceEEEEC-CeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCC
Q 024009           60 PATQLWR-GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPG  138 (274)
Q Consensus        60 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  138 (274)
                      +.+++.. +.||+..|...   ...+.+++       +.+.+-...-+++...+..+++..+++||+..-.+        
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD-------~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~--------   85 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG---RSSVRQVA-------LQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK--------   85 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT---TCEEEEEE-------TTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC--------
T ss_pred             ccEEEeCCCeEEEECCCCC---CCEEEEEE-------CCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC--------
Confidence            5666665 79999877421   13344444       55665444333444444556778889999997543        


Q ss_pred             CCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCC
Q 024009          139 SPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  217 (274)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~  217 (274)
                                    +.++.+| .+.+  .+..++.+ ...+.+++.-++++|+..|             .+.++.+|+++
T Consensus        86 --------------~~v~viD~~t~~--v~~~i~~g-~~~g~glt~Dg~~l~vs~g-------------s~~l~viD~~t  135 (266)
T 2iwa_A           86 --------------NIGFIYDRRTLS--NIKNFTHQ-MKDGWGLATDGKILYGSDG-------------TSILYEIDPHT  135 (266)
T ss_dssp             --------------SEEEEEETTTTE--EEEEEECC-SSSCCEEEECSSSEEEECS-------------SSEEEEECTTT
T ss_pred             --------------CEEEEEECCCCc--EEEEEECC-CCCeEEEEECCCEEEEECC-------------CCeEEEEECCC
Confidence                          4578887 4443  22222222 1112344555677887653             12899999998


Q ss_pred             CceEE-e--ccCCCcc-ceeeeEEEcCEEEEEc
Q 024009          218 LKWHV-I--GKLPYRV-KTTLAGYWNGWLYFTS  246 (274)
Q Consensus       218 ~~W~~-~--~~~p~~~-~~~~~~~~~~~l~~~G  246 (274)
                      .+-.. +  +.-+.+. ..-.+...+++||+--
T Consensus       136 ~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A          136 FKLIKKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             CCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence            76543 2  2112221 1123344488888653

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=94.83  E-value=1.8  Score=37.60  Aligned_cols=54  Identities=26%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEcc
Q 024009           65 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  128 (274)
Q Consensus        65 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  128 (274)
                      .++++|+|-|...-+.....+....     .+....|..   +|....  ++...++++|++-|
T Consensus       268 ~~G~tYFFKg~~yWR~~~~~~~~~p-----~~Is~~Wpg---lP~~ID--AAf~~~~~~yfFkG  321 (460)
T 1qhu_A          268 NHGATYVFSGSHYWRLDTNRDGWHS-----WPIAHQWPQ---GPSTVD--AAFSWEDKLYLIQD  321 (460)
T ss_dssp             TTCCEEEEETTEEEECTTGGGCCCC-----EEGGGTCTT---SCSSCS--EEEEETTEEEEEET
T ss_pred             CCCeEEEEeCCEEEEEecCCCCcCc-----cchhhhccC---CCCCCc--EEEEECCeEEEEeC
Confidence            3789999988533222221111110     023445653   344433  45556789999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.81  E-value=1.1  Score=38.05  Aligned_cols=29  Identities=17%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      +..++.+++.|+..+            .+..||+.+.+...
T Consensus       368 ~~~~~~~l~s~~~dg------------~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          368 LQFNKNFVITSSDDG------------TVKLWDLKTGEFIR  396 (445)
T ss_dssp             EEECSSEEEEEETTS------------EEEEEETTTCCEEE
T ss_pred             EEECCCEEEEEeCCC------------eEEEEECCCCceee
Confidence            444677777776432            79999998887543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.77  E-value=1  Score=36.91  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             CEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--C--CeEEEEcCCC
Q 024009           17 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSG   76 (274)
Q Consensus        17 ~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~   76 (274)
                      +.+++.|+.+        ..+.++|..+++|..+..+.........+.+  +  +.+++.|+.+
T Consensus        69 ~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           69 GTILASCSYD--------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             CSEEEEEETT--------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCEEEEeccC--------CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            4566666542        3577888888887666544322222333333  3  5677777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.68  E-value=0.12  Score=43.23  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=17.2

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL   50 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~   50 (274)
                      +..+|+.++.+        ..+.++|..+++....
T Consensus        43 g~~l~~~~~~d--------~~i~v~d~~~~~~~~~   69 (391)
T 1l0q_A           43 GTKVYVANAHS--------NDVSIIDTATNNVIAT   69 (391)
T ss_dssp             SSEEEEEEGGG--------TEEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCC--------CeEEEEECCCCeEEEE
Confidence            34566666432        4688999988765443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.41  E-value=0.64  Score=39.60  Aligned_cols=146  Identities=11%  Similarity=0.039  Sum_probs=67.8

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCe-EEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGR-LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP  112 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~  112 (274)
                      ..++++|..+++...+...+.  ...+.+.. +++ |++.+..+.   ...+..|       |..+.+...+........
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g---~~~i~~~-------d~~~~~~~~l~~~~~~~~  270 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG---SLNLYVM-------DLASGQIRQVTDGRSNNT  270 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS---SCEEEEE-------ETTTCCEEECCCCSSCEE
T ss_pred             cEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC---CceEEEE-------ECCCCCEEeCcCCCCccc
Confidence            578999999888766543321  12222333 555 444443221   1222333       355555444433322111


Q ss_pred             cceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009          113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIV  191 (274)
Q Consensus       113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~  191 (274)
                       .....-+++.++++.....                   ...+|.+| .+.+-+.+....   .........-+++.+++
T Consensus       271 -~~~~spdg~~l~~~s~~~g-------------------~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdG~~l~~  327 (415)
T 2hqs_A          271 -EPTWFPDSQNLAFTSDQAG-------------------RPQVYKVNINGGAPQRITWEG---SQNQDADVSSDGKFMVM  327 (415)
T ss_dssp             -EEEECTTSSEEEEEECTTS-------------------SCEEEEEETTSSCCEECCCSS---SEEEEEEECTTSSEEEE
T ss_pred             -ceEECCCCCEEEEEECCCC-------------------CcEEEEEECCCCCEEEEecCC---CcccCeEECCCCCEEEE
Confidence             1112225554444332211                   14688887 555444333211   11111112235555555


Q ss_pred             eccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          192 GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       192 GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      ++.....         ..++.+|+.+.+...+.
T Consensus       328 ~~~~~g~---------~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          328 VSSNGGQ---------QHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             EEECSSC---------EEEEEEETTTCCEEECC
T ss_pred             EECcCCc---------eEEEEEECCCCCEEEec
Confidence            5443221         27999999998887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.31  E-value=1.6  Score=37.04  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=34.5

Q ss_pred             eEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceE
Q 024009           12 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        12 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++..++..++.|+.+        ..+.++|..+.+-...-...  ...-.++..++.+++.|+.+     ..+.+|+
T Consensus       138 ~~~~d~~~l~~g~~d--------g~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~l~sg~~d-----g~i~vwd  199 (435)
T 1p22_A          138 CLQYDDQKIVSGLRD--------NTIKIWDKNTLECKRILTGH--TGSVLCLQYDERVIITGSSD-----STVRVWD  199 (435)
T ss_dssp             EEECCSSEEEEEESS--------SCEEEEESSSCCEEEEECCC--SSCEEEEECCSSEEEEEETT-----SCEEEEE
T ss_pred             EEEECCCEEEEEeCC--------CeEEEEeCCCCeEEEEEcCC--CCcEEEEEECCCEEEEEcCC-----CeEEEEE
Confidence            334466777777642        45778888876543321111  11222333477888888754     4455665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.01  E-value=0.66  Score=38.34  Aligned_cols=60  Identities=10%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++++++.|+.+        ..+.+||..++.|..+..+......-..+.+  ++++++.|+.+     ..+..|+
T Consensus        22 ~g~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd   83 (377)
T 3dwl_C           22 QRTEFVTTTAT--------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYE   83 (377)
T ss_dssp             SSSEEECCCSS--------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC-
T ss_pred             CCCEEEEecCC--------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEE
Confidence            56666666542        4567888888888777665533333233333  56677777644     3455555

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=93.99  E-value=1.2  Score=37.50  Aligned_cols=48  Identities=13%  Similarity=0.056  Sum_probs=27.8

Q ss_pred             eeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           36 HTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        36 ~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      .++.+|+.+.++..+..++....-.+++.. ++.+++.++.+     ..+..|+
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d  150 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLD  150 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEE
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEE
Confidence            688888887776665544333322233333 67788877543     3355555

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=93.89  E-value=1.2  Score=35.66  Aligned_cols=42  Identities=10%  Similarity=-0.076  Sum_probs=20.1

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceE-EEE-CCeEEEEcCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPAT-QLW-RGRLHVMGGSG   76 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~-~~~-~~~iyv~GG~~   76 (274)
                      ..+.++|..+.+......+......... ... +++.++.|+.+
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            4677888887764443322222222222 222 55667776644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.38  E-value=2.7  Score=34.24  Aligned_cols=68  Identities=7%  Similarity=-0.199  Sum_probs=34.8

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCCCCCCceeecC-
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHG-  263 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~-  263 (274)
                      +++.++.|+..+            .+..||+.+.+-...-.............-++.+++.| .    .....++++.. 
T Consensus       213 ~~~~l~~~~~d~------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~----d~~i~i~~~~~~  275 (372)
T 1k8k_C          213 NGSRVAWVSHDS------------TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H----DCFPVLFTYDSA  275 (372)
T ss_dssp             SSSEEEEEETTT------------EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T----TSSCEEEEEETT
T ss_pred             CCCEEEEEeCCC------------EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e----CCeEEEEEccCc
Confidence            455666665422            78999988776432211111111122222356666554 2    34556677666 


Q ss_pred             -Ceeeee
Q 024009          264 -DMWRTK  269 (274)
Q Consensus       264 -~~W~~~  269 (274)
                       +.|++.
T Consensus       276 ~~~~~~~  282 (372)
T 1k8k_C          276 AGKLSFG  282 (372)
T ss_dssp             TTEEEEC
T ss_pred             CceEEEe
Confidence             666554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.37  E-value=2.1  Score=35.90  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCceEEeccCCCccceeeeEEE--cCEEEEEccc
Q 024009          209 EIFQFNLNTLKWHVIGKLPYRVKTTLAGYW--NGWLYFTSGQ  248 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~~~GG~  248 (274)
                      .+..||..+.+...+..++........+.+  ++..++.||.
T Consensus       328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            788999888777665443322222122222  4666666664

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=93.27  E-value=3.4  Score=35.10  Aligned_cols=220  Identities=14%  Similarity=0.153  Sum_probs=108.3

Q ss_pred             eeEEeCCEEEEEcCcCCCCCCCCCCe---eEEE--ECCCCCeee--CCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCC
Q 024009           11 GMVTDGRYIYVVTGQYGPQCRGPTAH---TFVL--DTETKKWQD--LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE   83 (274)
Q Consensus        11 ~~~~~~~~iyv~GG~~~~~~~~~~~~---~~~~--d~~~~~W~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~   83 (274)
                      +.+...+.+-|.   +..++...++.   .|.+  ....+.|+.  ++-+|....-|+.+.+++.-|++|=..+.-...+
T Consensus       234 asvid~n~FTV~---~~~~qt~~~Nnag~~W~~~T~F~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe  310 (670)
T 3ju4_A          234 ATVIDKDNFTVL---TPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPRE  310 (670)
T ss_dssp             CEEEETTEEEEE---CSCCCSSCEECTTCEEEEEECSTTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCE
T ss_pred             EEEEccCceEEe---cCCccccccccccceeeeeeeeccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcce
Confidence            345556666666   33333222222   3333  345667754  4666767778999999888888874333322233


Q ss_pred             ccceEeeeecCCCCCCceeeccCC-CCCCCcceeEEeCCEEEEEc-cCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009           84 VDHWSLAVKDGKPLEKEWRTEIPI-PRGGPHRACVVVDDRLLVIG-GQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D  160 (274)
Q Consensus        84 ~~~~~~~~~~~d~~~~~W~~~~~~-p~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  160 (274)
                      +-.+.++.---.+..-.-+.++.. .+......+-.+++.||+.- |.....                 .-..+..-+ .
T Consensus       311 ~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdgvLyLtTRgt~~~~-----------------~GS~L~rs~d~  373 (670)
T 3ju4_A          311 VGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDR-----------------LGSSLHRSRDI  373 (670)
T ss_dssp             EEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEEEESCTTS-----------------CCCEEEEESST
T ss_pred             eeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEecCcCCCC-----------------Ccceeeeeccc
Confidence            333332100000111111222222 11212223446899999984 332210                 112233333 4


Q ss_pred             CCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCC-----CCccc---ccccCceEEEE-----cCCCceEEe-ccC
Q 024009          161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKH-----PTTKK---MVLVGEIFQFN-----LNTLKWHVI-GKL  226 (274)
Q Consensus       161 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~---~~~~~~i~~yd-----~~~~~W~~~-~~~  226 (274)
                      ...|..+.-. ....+...-.+..++.||++|-.....     .+.+|   .+.-.-+.+.+     .++-+|..+ .++
T Consensus       374 Gq~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqI  452 (670)
T 3ju4_A          374 GQTWESLRFP-HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQI  452 (670)
T ss_dssp             TSSCEEEECT-TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECB
T ss_pred             CCchhheecc-ccccccCCCcceeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecce
Confidence            5668777533 333333355688999999999654321     11111   11111223333     344468766 222


Q ss_pred             C------CccceeeeEEEcCEEE-EEccccCC
Q 024009          227 P------YRVKTTLAGYWNGWLY-FTSGQRDK  251 (274)
Q Consensus       227 p------~~~~~~~~~~~~~~l~-~~GG~~~~  251 (274)
                      -      ....-.++++.++.|| +|||++..
T Consensus       453 YqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~  484 (670)
T 3ju4_A          453 YQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF  484 (670)
T ss_dssp             BCCSSSCCCSEEEEEEEETTEEEEEEEEBCSC
T ss_pred             eccccccccccceeEEEeCCEEEEEecCcccC
Confidence            2      2223355666688887 88998773

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=93.18  E-value=2.8  Score=33.89  Aligned_cols=78  Identities=13%  Similarity=0.139  Sum_probs=38.7

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK  231 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~  231 (274)
                      ..++.+| .+.+....-+.+.+.   ..++...++.+|+.....            +.+..+|+.+.+....-+.+  ..
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~s~dg~~l~v~~~~~------------~~v~~~d~~~~~~~~~~~~~--~~  315 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPESL---AVLFNPARNEAYVTHRQA------------GKVSVIDAKSYKVVKTFDTP--TH  315 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC---CEEEETTTTEEEEEETTT------------TEEEEEETTTTEEEEEEECC--SE
T ss_pred             CEEEEEECCCCcEEEEEEcCCCc---eEEECCCCCEEEEEECCC------------CeEEEEECCCCeEEEEEecC--CC
Confidence            3577777 555543333333321   122222344677765422            27999999887655432222  22


Q ss_pred             eeeeEEE-cC-EEEEEcc
Q 024009          232 TTLAGYW-NG-WLYFTSG  247 (274)
Q Consensus       232 ~~~~~~~-~~-~l~~~GG  247 (274)
                      ...++.. ++ .||+...
T Consensus       316 ~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          316 PNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             EEEEEECTTSCEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEc
Confidence            2233332 44 4776643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.97  E-value=1.8  Score=34.52  Aligned_cols=76  Identities=20%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             ceEEeC--CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEe-ccCCC
Q 024009          154 DVYMLD--DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVI-GKLPY  228 (274)
Q Consensus       154 ~~~~~d--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~-~~~p~  228 (274)
                      .+++||  .+..|+.-.+. .+.    .+....++.+++.+...            ..+..+|+++.+  |+.- ..++.
T Consensus       147 ~v~~~d~~G~~~w~~~~~~-~~~----~~~~~~~g~~~v~~~~~------------~~v~~~d~~tG~~~w~~~~~~~~~  209 (276)
T 3no2_A          147 EVREIAPNGQLLNSVKLSG-TPF----SSAFLDNGDCLVACGDA------------HCFVQLNLESNRIVRRVNANDIEG  209 (276)
T ss_dssp             EEEEECTTSCEEEEEECSS-CCC----EEEECTTSCEEEECBTT------------SEEEEECTTTCCEEEEEEGGGSBS
T ss_pred             EEEEECCCCCEEEEEECCC-Ccc----ceeEcCCCCEEEEeCCC------------CeEEEEeCcCCcEEEEecCCCCCC
Confidence            577887  33457654431 111    23344567888776432            269999999665  6543 22332


Q ss_pred             ccc--eeeeEE-EcCEEEEEc
Q 024009          229 RVK--TTLAGY-WNGWLYFTS  246 (274)
Q Consensus       229 ~~~--~~~~~~-~~~~l~~~G  246 (274)
                      .+.  ..++.. .++.+|+..
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEE
T ss_pred             ccccccccceEcCCCCEEEEe
Confidence            221  223333 378899886

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.94  E-value=2.1  Score=36.38  Aligned_cols=58  Identities=10%  Similarity=0.066  Sum_probs=30.3

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++.+++.|+.+        ..+.++|..+++-...-.  .....-..+..++..++.|+.+     ..+..|+
T Consensus       182 ~~~~l~sg~~d--------g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd  239 (435)
T 1p22_A          182 DERVIITGSSD--------STVRVWDVNTGEMLNTLI--HHCEAVLHLRFNNGMMVTCSKD-----RSIAVWD  239 (435)
T ss_dssp             CSSEEEEEETT--------SCEEEEESSSCCEEEEEC--CCCSCEEEEECCTTEEEEEETT-----SCEEEEE
T ss_pred             CCCEEEEEcCC--------CeEEEEECCCCcEEEEEc--CCCCcEEEEEEcCCEEEEeeCC-----CcEEEEe
Confidence            56666666542        357788888765432211  1112222333456677777654     3455565

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.92  E-value=2.6  Score=32.75  Aligned_cols=50  Identities=18%  Similarity=0.070  Sum_probs=24.4

Q ss_pred             CCEEEE-EcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcC
Q 024009           16 GRYIYV-VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus        16 ~~~iyv-~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      ++++|+ ....        ...+.+||+.+.......... ...-..++.. +++||+...
T Consensus        34 ~g~l~v~~~~~--------~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~   85 (270)
T 1rwi_B           34 AGNVYVTSEGM--------YGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF   85 (270)
T ss_dssp             TCCEEEEECSS--------SCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEET
T ss_pred             CCCEEEEccCC--------CCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcC
Confidence            667888 5221        256788888776655443211 1122334443 567888754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=92.72  E-value=3  Score=32.85  Aligned_cols=48  Identities=10%  Similarity=0.172  Sum_probs=27.4

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCC-CceEEEE-CCeEEEEc
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY-APATQLW-RGRLHVMG   73 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~G   73 (274)
                      ++.+|+....        ...+.+||+. ++...+.. +.... -..++.. ++.+|+..
T Consensus        30 ~g~l~v~~~~--------~~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~   79 (300)
T 2qc5_A           30 DGKVWFTQHK--------ANKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTE   79 (300)
T ss_dssp             TSCEEEEETT--------TTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEE
T ss_pred             CCCEEEEcCC--------CCeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEe
Confidence            6778887431        2568889988 66665431 21112 2333333 56888865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.60  E-value=2.4  Score=35.51  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=27.9

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ..+.++|..+++............-.+++.. ++.+++.|+.+     ..+..|+
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd  162 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYD  162 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEE
Confidence            5688999988876655443322222233333 66677777644     3455555

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.58  E-value=2.9  Score=32.50  Aligned_cols=40  Identities=8%  Similarity=-0.024  Sum_probs=23.2

Q ss_pred             CeeEEEECCC-CCeeeCCCCCCCCCCceEEEE-CCeEEEEcC
Q 024009           35 AHTFVLDTET-KKWQDLPPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus        35 ~~~~~~d~~~-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      ..++++|..+ .+...+...+....-..+... +++.+++++
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  103 (297)
T 2ojh_A           62 GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISD  103 (297)
T ss_dssp             TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEE
T ss_pred             CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEE
Confidence            4789999998 877766543322222223333 566666655

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=92.04  E-value=4.8  Score=33.73  Aligned_cols=53  Identities=15%  Similarity=-0.047  Sum_probs=30.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC---CCCCceEEEE--CCeEEEEcCCC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV---PRYAPATQLW--RGRLHVMGGSG   76 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~---~r~~~~~~~~--~~~iyv~GG~~   76 (274)
                      ++.+++.++..        ..+.++|..+++.....+...   .......+.+  ++++++.++.+
T Consensus       133 ~~~~~~~~~~~--------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          133 NTRLAIPLLED--------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             SSEEEEEBTTS--------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CCeEEEEeCCC--------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            66777776532        358899999887665433221   1111222233  67888887643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=91.93  E-value=2.6  Score=33.83  Aligned_cols=28  Identities=7%  Similarity=0.011  Sum_probs=17.5

Q ss_pred             ceEEEEcCCCceEEeccCCCccceeeeE
Q 024009          209 EIFQFNLNTLKWHVIGKLPYRVKTTLAG  236 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~  236 (274)
                      .+|..|+++.+++.+..++.......++
T Consensus       302 ~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          302 SVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             EEEEEcCCCceeeEccccccCCCCeeEE
Confidence            4555588888898886666543333333

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=91.89  E-value=3.4  Score=31.64  Aligned_cols=48  Identities=17%  Similarity=0.344  Sum_probs=30.6

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-----e----ccCCCccceeeeEEEcCEEEEEccc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-----I----GKLPYRVKTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-----~----~~~p~~~~~~~~~~~~~~l~~~GG~  248 (274)
                      ++++|++-|.              ..|+||..+++-..     +    ..+|.  .-.++...++++|+|-|.
T Consensus       127 ~gk~yfFkG~--------------~ywr~d~~~~~~d~gyPr~i~~~~~Gip~--~iDaAf~~~g~~YfFkg~  183 (207)
T 1pex_A          127 TGKTLLFSGN--------------QVWRYDDTNHIMDKDYPRLIEEDFPGIGD--KVDAVYEKNGYIYFFNGP  183 (207)
T ss_dssp             TSEEEEEETT--------------EEEEEETTTTEECSSCCCBHHHHSTTSCS--CCSEEEEETTEEEEEETT
T ss_pred             CCEEEEEeCC--------------EEEEEeCcCccccCCCCccHHHcCCCCCC--CccEEEEcCCcEEEEECC
Confidence            4899999764              78999987653221     1    12332  234444568999999773

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=91.80  E-value=5.4  Score=33.84  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             EEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       181 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ....++++++.|+ .+            .+..||+.+.+-..
T Consensus       398 ~~~~~~~~l~~~~-dg------------~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          398 TFYVSDNILVSGS-EN------------QFNIYNLRSGKLVH  426 (464)
T ss_dssp             EEEECSSEEEEEE-TT------------EEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEec-CC------------eEEEEECCCCcEEe
Confidence            3455677777765 21            79999999887654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=91.12  E-value=8.5  Score=34.81  Aligned_cols=62  Identities=8%  Similarity=0.051  Sum_probs=31.2

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeC-CEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      ..+|.++ .....+.+..-......  .....-+ +.|++.+......        ...++.+|+.+.+.+.+.
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~--~~~~spdg~~l~~~~~~~~~~--------~~~l~~~d~~~~~~~~l~  398 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTN--FAGFDPKGTRLYFESTEASPL--------ERHFYCIDIKGGKTKDLT  398 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEE--EEEECTTSSEEEEEESSSCTT--------CBEEEEEETTCCCCEESC
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEe--eeEEcCCCCEEEEEecCCCCc--------eEEEEEEEcCCCCceecc
Confidence            4688887 45555555432211111  1112223 4565555432211        127899999888766654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=90.89  E-value=2.4  Score=39.15  Aligned_cols=95  Identities=9%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--C--CeEEEEcCCCCCCCCCCccceEeee
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSGENRYTPEVDHWSLAV   91 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~~   91 (274)
                      +++.++.|+.+        ..+.++|..+.++..+..+......-..+.+  +  +.+++.|+.+     ..+..|+   
T Consensus        20 dg~~latg~~d--------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd---   83 (753)
T 3jro_A           20 YGKRLATCSSD--------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWK---   83 (753)
T ss_dssp             SSCCEEEEETT--------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEE---
T ss_pred             CCCeEEEEECC--------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEE---
Confidence            45566666542        4577888776666665443322222222333  3  6777777754     4466666   


Q ss_pred             ecCCCCCCceeeccCCCCCCCc-ceeEEe-C--CEEEEEccCC
Q 024009           92 KDGKPLEKEWRTEIPIPRGGPH-RACVVV-D--DRLLVIGGQE  130 (274)
Q Consensus        92 ~~~d~~~~~W~~~~~~p~~~~~-~~~~~~-~--~~iyv~GG~~  130 (274)
                          ..+.+|..+..+..-... ..+... +  +.+++.|+.+
T Consensus        84 ----~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           84 ----EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             ----EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ----CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence                345555444332211111 122222 2  5677777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.86  E-value=2.6  Score=34.80  Aligned_cols=39  Identities=13%  Similarity=-0.006  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCceEEeccCCCccceeeeEE--EcCEEEEEcccc
Q 024009          209 EIFQFNLNTLKWHVIGKLPYRVKTTLAGY--WNGWLYFTSGQR  249 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~--~~~~l~~~GG~~  249 (274)
                      .|..||+.+.+-...  +.....-.+++.  .++.+++.||.+
T Consensus       293 ~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s~s~D  333 (357)
T 4g56_B          293 TVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTTVGWD  333 (357)
T ss_dssp             CEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred             EEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence            688999887754432  211111122222  256777777753

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=90.78  E-value=4.4  Score=30.96  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ...++++|++-|.              ..++||..+.+-..
T Consensus       171 f~~~g~~YfFkg~--------------~y~rf~~~~~~v~~  197 (207)
T 1pex_A          171 YEKNGYIYFFNGP--------------IQFEYSIWSNRIVR  197 (207)
T ss_dssp             EEETTEEEEEETT--------------EEEEEETTTTEEEE
T ss_pred             EEcCCcEEEEECC--------------EEEEEeCCccEEec
Confidence            4568999999764              78999988776544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.68  E-value=5.9  Score=32.21  Aligned_cols=24  Identities=4%  Similarity=0.028  Sum_probs=16.1

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      .++++++.|+..+            .+..||..+.+
T Consensus       280 ~~g~~l~~g~~d~------------~i~vwd~~~~~  303 (340)
T 1got_B          280 KSGRLLLAGYDDF------------NCNVWDALKAD  303 (340)
T ss_dssp             TTSSEEEEEETTS------------EEEEEETTTCC
T ss_pred             CCCCEEEEECCCC------------eEEEEEcccCc
Confidence            3567777776432            78899977654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.66  E-value=5.4  Score=31.75  Aligned_cols=59  Identities=7%  Similarity=-0.029  Sum_probs=29.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      +++.++.|+.+        ..+.++|..+.+....-... ...-..++.. ++++++.|+.+     ..+..|+
T Consensus        34 ~~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd   93 (312)
T 4ery_A           34 NGEWLASSSAD--------KLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDD-----KTLKIWD   93 (312)
T ss_dssp             TSSEEEEEETT--------SCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             CCCEEEEeeCC--------CeEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCC-----CEEEEEE
Confidence            45556666532        34677888777654432111 1111222222 56777777654     3445555

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=90.63  E-value=3.9  Score=31.73  Aligned_cols=69  Identities=6%  Similarity=-0.077  Sum_probs=32.9

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK  225 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~  225 (274)
                      ..+|.++ .......+.....   .........+++.+++++........ .......++.+|+.+.+...+..
T Consensus       197 ~~i~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~  266 (297)
T 2ojh_A          197 MQIWRVRVDGSSVERITDSAY---GDWFPHPSPSGDKVVFVSYDADVFDH-PRDLDVRVQLMDMDGGNVETLFD  266 (297)
T ss_dssp             CEEEEEETTSSCEEECCCCSE---EEEEEEECTTSSEEEEEEEETTCCSC-CSSEEEEEEEEETTSCSCEEEEE
T ss_pred             ccEEEECCCCCCcEEEecCCc---ccCCeEECCCCCEEEEEEcCCCCCcc-cccCceEEEEEecCCCCceeeec
Confidence            4677776 5555555543221   11111122345555554433221100 00012379999999988766643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.62  E-value=3.2  Score=34.41  Aligned_cols=41  Identities=10%  Similarity=-0.032  Sum_probs=19.5

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSG   76 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~   76 (274)
                      ..+.+||..+.+-...-... ...-.+++.. ++++++.|+.+
T Consensus       227 g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d  268 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDD  268 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEcCC
Confidence            45788998876422211111 1111223333 56677776643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=90.54  E-value=7.2  Score=32.96  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=27.7

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-eccCCCccceeeeEEEcCEEEEEcccc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-IGKLPYRVKTTLAGYWNGWLYFTSGQR  249 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~l~~~GG~~  249 (274)
                      .++..++.|+..+            .+..||+.+.+-.. +...............++..++.|+.+
T Consensus       327 ~~~~~l~~~~~dg------------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d  381 (445)
T 2ovr_B          327 LKDNILVSGNADS------------TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD  381 (445)
T ss_dssp             EETTEEEEEETTS------------CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT
T ss_pred             EeCCEEEEEeCCC------------eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC
Confidence            3455666665432            78999987765432 221111222233334456666666643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.45  E-value=6.6  Score=32.42  Aligned_cols=12  Identities=8%  Similarity=0.119  Sum_probs=9.4

Q ss_pred             ceEEEEcCCCce
Q 024009          209 EIFQFNLNTLKW  220 (274)
Q Consensus       209 ~i~~yd~~~~~W  220 (274)
                      .+..||+.+.+-
T Consensus       311 ~i~i~d~~~~~~  322 (425)
T 1r5m_A          311 SVRLWSLKQNTL  322 (425)
T ss_dssp             EEEEEETTTTEE
T ss_pred             cEEEEECCCCcE
Confidence            789999877653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=90.32  E-value=5.2  Score=30.97  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=25.6

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEc
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMG   73 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G   73 (274)
                      ++++|+...         ...+++||+.+.......... ...-..++.. +++||+..
T Consensus        77 ~g~l~v~~~---------~~~i~~~d~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~  125 (270)
T 1rwi_B           77 AGTVYVTDF---------NNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVAD  125 (270)
T ss_dssp             TCCEEEEET---------TTEEEEECTTCSCCEECCCCS-CSSEEEEEECTTCCEEEEE
T ss_pred             CCCEEEEcC---------CCEEEEEeCCCceEeeeecCC-cCCCcceEECCCCCEEEEE
Confidence            456776643         146788888876654443211 1122333333 66788864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=89.82  E-value=6.9  Score=31.64  Aligned_cols=26  Identities=4%  Similarity=0.169  Sum_probs=17.6

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH  221 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~  221 (274)
                      .++++++.|+..+            .|..||+.+.+..
T Consensus       216 pd~~~l~s~s~dg------------~i~iwd~~~~~~~  241 (321)
T 3ow8_A          216 PDSQLLVTASDDG------------YIKIYDVQHANLA  241 (321)
T ss_dssp             TTSCEEEEECTTS------------CEEEEETTTCCEE
T ss_pred             CCCCEEEEEcCCC------------eEEEEECCCccee
Confidence            3567777776432            6889998876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=89.80  E-value=6.8  Score=31.55  Aligned_cols=36  Identities=11%  Similarity=-0.016  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCceEEeccCCCccceeeeEEE-c-CEEEEEcc
Q 024009          209 EIFQFNLNTLKWHVIGKLPYRVKTTLAGYW-N-GWLYFTSG  247 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~-~~l~~~GG  247 (274)
                      .++.||+.+.+....-+.+.+   ..+... + +.+|+.+.
T Consensus       254 ~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~  291 (353)
T 3vgz_A          254 EVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHR  291 (353)
T ss_dssp             EEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEEC
Confidence            799999988876544334333   122222 3 35776653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.78  E-value=7.4  Score=31.93  Aligned_cols=24  Identities=8%  Similarity=0.123  Sum_probs=15.9

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      .++++++.|+..+            .+..||+.+.+
T Consensus       294 ~~g~~l~~g~~d~------------~i~vwd~~~~~  317 (354)
T 2pbi_B          294 LSGRLLFAGYNDY------------TINVWDVLKGS  317 (354)
T ss_dssp             TTSSEEEEEETTS------------CEEEEETTTCS
T ss_pred             CCCCEEEEEECCC------------cEEEEECCCCc
Confidence            3567777766422            78899986654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=89.77  E-value=12  Score=34.49  Aligned_cols=158  Identities=15%  Similarity=0.092  Sum_probs=80.2

Q ss_pred             CeeEEEECCCCCeeeCCCCCC---CCCC-ceEEEE-CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccC---
Q 024009           35 AHTFVLDTETKKWQDLPPLPV---PRYA-PATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP---  106 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~---~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---  106 (274)
                      .-+++||+.+++|......+.   .... .++... ++.|++..-..      -+.+       +|+.+.+++....   
T Consensus       469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~------Gl~~-------~~~~~~~~~~~~~~~~  535 (781)
T 3v9f_A          469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG------GVGI-------YTPDMQLVRKFNQYEG  535 (781)
T ss_dssp             TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS------CEEE-------ECTTCCEEEEECTTTT
T ss_pred             CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC------CEEE-------EeCCCCeEEEccCCCC
Confidence            458899999988877643221   1111 122222 66787753111      1122       2355556655432   


Q ss_pred             CCCCCCcceeEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCce-EEeC-CCCCeEecC---CCCCCCccceee
Q 024009          107 IPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV-YMLD-DEMKWKVLP---SMPKPDSHIEFA  180 (274)
Q Consensus       107 ~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d-~~~~W~~~~---~~~~~~~~~~~~  180 (274)
                      ++.... .+++. .++.|++...                        .-+ +.|| .+.+++...   .++....   .+
T Consensus       536 l~~~~i-~~i~~d~~g~lWi~T~------------------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i---~~  587 (781)
T 3v9f_A          536 FCSNTI-NQIYRSSKGQMWLATG------------------------EGLVCFPSARNFDYQVFQRKEGLPNTHI---RA  587 (781)
T ss_dssp             CSCSCE-EEEEECTTSCEEEEET------------------------TEEEEESCTTTCCCEEECGGGTCSCCCC---CE
T ss_pred             CCCCee-EEEEECCCCCEEEEEC------------------------CCceEEECCCCCcEEEccccCCCCCceE---EE
Confidence            222211 12222 3567877533                        124 6676 556665543   2333222   12


Q ss_pred             EEE-eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCCccce-eeeEEE-cCEEEEEccc
Q 024009          181 WVL-VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPYRVKT-TLAGYW-NGWLYFTSGQ  248 (274)
Q Consensus       181 ~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~~~-~~~~~~-~~~l~~~GG~  248 (274)
                      ++. .++.|++.+.              +.+.+||+++.+++..   ..++..... .+++.. +++||+ ||.
T Consensus       588 i~~d~~g~lW~~t~--------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~  646 (781)
T 3v9f_A          588 ISEDKNGNIWASTN--------------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSI  646 (781)
T ss_dssp             EEECSSSCEEEECS--------------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EET
T ss_pred             EEECCCCCEEEEcC--------------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECC
Confidence            232 3577887752              1689999999988775   345544433 233333 567664 553

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=89.76  E-value=7  Score=31.61  Aligned_cols=24  Identities=4%  Similarity=0.214  Sum_probs=16.3

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW  220 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W  220 (274)
                      +++.++.|+..+            .+..||+.+.+-
T Consensus       259 ~~~~l~s~s~D~------------~v~iwd~~~~~~  282 (321)
T 3ow8_A          259 DDTHFVSSSSDK------------SVKVWDVGTRTC  282 (321)
T ss_dssp             TSSEEEEEETTS------------CEEEEETTTTEE
T ss_pred             CCCEEEEEeCCC------------cEEEEeCCCCEE
Confidence            566777776433            788999877643

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=89.61  E-value=3.7  Score=37.93  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             CEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--C--CeEEEEcCCC
Q 024009           17 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--R--GRLHVMGGSG   76 (274)
Q Consensus        17 ~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~   76 (274)
                      +..++.|+.+        ..+.++|..+++|..+..+......-..+.+  +  +.+++.|+.+
T Consensus        67 ~~~l~s~s~D--------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d  122 (753)
T 3jro_A           67 GTILASCSYD--------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  122 (753)
T ss_dssp             CSEEEEEETT--------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCEEEEEeCC--------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence            4555565532        3477888888877666543322223233333  3  6777777754

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.21  E-value=5.8  Score=29.98  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=29.8

Q ss_pred             eeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC---eeeC----CCCCCCCCCceEEEECCeEEEEcCC
Q 024009           10 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK---WQDL----PPLPVPRYAPATQLWRGRLHVMGGS   75 (274)
Q Consensus        10 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~   75 (274)
                      -+++.+++++|+|-|          +.+|+++...-.   =..+    +.+|. ...++....++++|+|-|.
T Consensus         9 DA~~~~~g~~~fFkg----------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg~   70 (196)
T 3c7x_A            9 DTVAMLRGEMFVFKE----------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKGD   70 (196)
T ss_dssp             SEEEEETTEEEEEET----------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEETT
T ss_pred             cEEEEcCCEEEEEEC----------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecCC
Confidence            345578999999976          567777643210   0111    12332 2222221237789998774

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=89.17  E-value=5.3  Score=32.83  Aligned_cols=13  Identities=0%  Similarity=-0.018  Sum_probs=9.8

Q ss_pred             ceEEEEcCCCceE
Q 024009          209 EIFQFNLNTLKWH  221 (274)
Q Consensus       209 ~i~~yd~~~~~W~  221 (274)
                      .|..||..+.+-.
T Consensus       281 ~i~vwd~~~~~~~  293 (344)
T 4gqb_B          281 SLAVLDSSLSELF  293 (344)
T ss_dssp             CEEEECTTCCEEE
T ss_pred             eEEEEECCCCcEE
Confidence            6888998877543

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=88.72  E-value=11  Score=32.62  Aligned_cols=48  Identities=23%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE--Ee----ccCCCccceeeeEEEcCEEEEEcc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH--VI----GKLPYRVKTTLAGYWNGWLYFTSG  247 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~--~~----~~~p~~~~~~~~~~~~~~l~~~GG  247 (274)
                      .++++|++-|.              ..|++|...+.+.  .|    +.+|...  -++...++++|+|-|
T Consensus       268 ~~G~tYFFKg~--------------~yWR~~~~~~~~~p~~Is~~WpglP~~I--DAAf~~~~~~yfFkG  321 (460)
T 1qhu_A          268 NHGATYVFSGS--------------HYWRLDTNRDGWHSWPIAHQWPQGPSTV--DAAFSWEDKLYLIQD  321 (460)
T ss_dssp             TTCCEEEEETT--------------EEEECTTGGGCCCCEEGGGTCTTSCSSC--SEEEEETTEEEEEET
T ss_pred             CCCeEEEEeCC--------------EEEEEecCCCCcCccchhhhccCCCCCC--cEEEEECCeEEEEeC
Confidence            56899998764              6777776543331  12    3445432  333445788888865

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=88.67  E-value=7.8  Score=30.76  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=17.3

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW  220 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W  220 (274)
                      .++.+++.|+..+            .|..||+.+.+-
T Consensus       247 ~~~~~l~sg~~dg------------~i~vwd~~~~~~  271 (312)
T 4ery_A          247 TGGKWIVSGSEDN------------LVYIWNLQTKEI  271 (312)
T ss_dssp             SSSCEEEECCTTS------------CEEEEETTTCCE
T ss_pred             CCCcEEEEECCCC------------EEEEEECCCchh
Confidence            4567777776433            789999887753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=88.63  E-value=9.8  Score=32.09  Aligned_cols=60  Identities=13%  Similarity=-0.028  Sum_probs=33.9

Q ss_pred             CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009          153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK  225 (274)
Q Consensus       153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~  225 (274)
                      ..++.+| .+.+...+....    ........-+++.+++++.....         ..++.+|+.....+.+..
T Consensus       335 ~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~---------~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          335 QHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTMVIYSSSQGMG---------SVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             EEEEEEETTTCCEEECCCSS----SCEEEEECTTSSEEEEEEEETTE---------EEEEEEETTSCCEEECCC
T ss_pred             eEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCEEEEEEcCCCc---------cEEEEEECCCCcEEEeeC
Confidence            3577777 666666554332    11122233356666666543321         279999998887766643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=88.30  E-value=9.1  Score=31.04  Aligned_cols=60  Identities=7%  Similarity=-0.068  Sum_probs=32.7

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++.+++.|+.+        ..+.++|..+.+-...........-.+++.. ++.+++.|+.+     ..+..|+
T Consensus       138 ~~~~l~s~s~d--------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd  198 (343)
T 3lrv_A          138 NTEYFIWADNR--------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYN  198 (343)
T ss_dssp             -CCEEEEEETT--------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEE
T ss_pred             CCCEEEEEeCC--------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEE
Confidence            34556656532        4577889888775443222222222333343 67788887754     4566666

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=88.29  E-value=8.7  Score=30.84  Aligned_cols=28  Identities=7%  Similarity=-0.061  Sum_probs=16.6

Q ss_pred             EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC
Q 024009           18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL   50 (274)
Q Consensus        18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~   50 (274)
                      .+++.|+....     -..+.+||..+++....
T Consensus        32 ~l~~~~s~~~~-----d~~v~iw~~~~~~~~~~   59 (357)
T 3i2n_A           32 KFVTMGNFARG-----TGVIQLYEIQHGDLKLL   59 (357)
T ss_dssp             EEEEEEC--CC-----CEEEEEEEECSSSEEEE
T ss_pred             eEEEecCccCC-----CcEEEEEeCCCCcccce
Confidence            56666654211     25678889888776544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=88.19  E-value=8.3  Score=30.63  Aligned_cols=25  Identities=4%  Similarity=-0.106  Sum_probs=17.1

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH  221 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~  221 (274)
                      ++++++.++..+            .+..||+.+.+-.
T Consensus       276 ~~~~l~~~~~dg------------~i~~~~~~~~~~~  300 (337)
T 1gxr_A          276 CGKWFVSTGKDN------------LLNAWRTPYGASI  300 (337)
T ss_dssp             TSSEEEEEETTS------------EEEEEETTTCCEE
T ss_pred             CCCEEEEecCCC------------cEEEEECCCCeEE
Confidence            466667766422            7899998887654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.96  E-value=7.2  Score=31.58  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      +...+.+++.||..+            .+..||..+..|+.+.
T Consensus       257 ~~s~~~~l~s~~~dg------------~v~iw~~~~~~~~~~~  287 (330)
T 2hes_X          257 AWGFNGLIASVGADG------------VLAVYEEVDGEWKVFA  287 (330)
T ss_dssp             EECTTSCEEEEETTS------------CEEEEEEETTEEEEEE
T ss_pred             EEcCCCEEEEEeCCC------------EEEEEEcCCCceEEEe
Confidence            333455666666432            6888998888886653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.66  E-value=8.9  Score=31.00  Aligned_cols=40  Identities=18%  Similarity=0.039  Sum_probs=22.5

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      -.+|.+|..+++++.+........-..+++. +++||+.+.
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~   58 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDK   58 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEE
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEe
Confidence            3578888888888765322222222233333 667777653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.62  E-value=4.1  Score=37.49  Aligned_cols=59  Identities=10%  Similarity=0.015  Sum_probs=29.6

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++..++.|+.        -..+.+||..+++....-..+.. .-.+++.. +++.+++|+.+     ..+.+|+
T Consensus        24 ~~~~la~~~~--------~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-----g~i~vw~   83 (814)
T 3mkq_A           24 TEPWVLTTLY--------SGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDD-----FRIRVFN   83 (814)
T ss_dssp             SSSEEEEEET--------TSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETT-----SEEEEEE
T ss_pred             CCCEEEEEeC--------CCEEEEEECCCCceEEEEecCCC-cEEEEEEeCCCCEEEEEeCC-----CeEEEEE
Confidence            4555666552        14678888887654332111111 11222233 66677777653     3455555

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=87.42  E-value=2.8  Score=32.60  Aligned_cols=19  Identities=5%  Similarity=0.221  Sum_probs=15.8

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcC
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  216 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~  216 (274)
                      .++++|++-|.              ..|+||..
T Consensus       179 ~~g~~YfFkG~--------------~ywr~d~~  197 (225)
T 3oyo_A          179 KEPEAYLFKGQ--------------NYVRIDFT  197 (225)
T ss_dssp             STTEEEEEETT--------------EEEEEECC
T ss_pred             CCCEEEEEECC--------------EEEEEeCC
Confidence            37899999764              78999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=87.39  E-value=8.9  Score=31.48  Aligned_cols=58  Identities=3%  Similarity=-0.108  Sum_probs=31.0

Q ss_pred             EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC-CCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceE
Q 024009           18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++++.|+.+        ..+.++|..+.+....-... ....-.++...  ++.+++.|+.+     ..+..|+
T Consensus        87 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd  147 (383)
T 3ei3_B           87 TTVAVGSKG--------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRD  147 (383)
T ss_dssp             TEEEEEEBT--------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEE
T ss_pred             CEEEEEcCC--------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEE
Confidence            566666642        45788999887766543321 11122233333  34677776644     3455555

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=87.12  E-value=5.3  Score=32.37  Aligned_cols=27  Identities=7%  Similarity=0.182  Sum_probs=16.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECC-CCCeeeC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTE-TKKWQDL   50 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~   50 (274)
                      ++++|+.+..        ...+++||.. +++...+
T Consensus       151 dg~l~v~~~~--------~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          151 DNRLAVIDLG--------SDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             TSCEEEEETT--------TTEEEEEEECTTSCEEEE
T ss_pred             CCcEEEEeCC--------CCEEEEEEECCCCcEEEe
Confidence            5667766431        2468888887 5565543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=86.98  E-value=12  Score=30.91  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=17.3

Q ss_pred             CEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          186 NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       186 ~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      +.+++.|+..+            .+..||+.+.+-..
T Consensus       178 ~~~l~~~~~dg------------~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          178 AHVFASAGSSN------------FASIWDLKAKKEVI  202 (416)
T ss_dssp             TTEEEEESSSS------------CEEEEETTTTEEEE
T ss_pred             CcEEEEEcCCC------------CEEEEECCCCCcce
Confidence            56777776432            79999998876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=86.91  E-value=9.7  Score=29.86  Aligned_cols=53  Identities=6%  Similarity=-0.025  Sum_probs=26.1

Q ss_pred             eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCC
Q 024009           15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSG   76 (274)
Q Consensus        15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~   76 (274)
                      .++..++.|+.+        ..+.++|..+.+-...-... ...-.+++.. ++++++.|+.+
T Consensus        27 ~~~~~l~s~~~d--------g~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d   80 (313)
T 3odt_A           27 VDDSKVASVSRD--------GTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKD   80 (313)
T ss_dssp             EETTEEEEEETT--------SEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETT
T ss_pred             cCCCEEEEEEcC--------CcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCC
Confidence            344455565532        45778887765433322111 1112222333 66777777654

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=86.77  E-value=8.5  Score=29.04  Aligned_cols=54  Identities=13%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-----e----ccCCCccceeeeEEEcCEEEEEccc
Q 024009          179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-----I----GKLPYRVKTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-----~----~~~p~~~~~~~~~~~~~~l~~~GG~  248 (274)
                      +++...++++|++-|.              ..|+||..+++-..     +    ..+|.  .-.++...++.+|+|-|.
T Consensus       103 AA~~~~~g~~yfFkg~--------------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~--~idaa~~~~g~~Yffkg~  165 (195)
T 1itv_A          103 GALRSGRGKMLLFSGR--------------RLWRFDVKAQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQDR  165 (195)
T ss_dssp             EEEECSTTEEEEEETT--------------EEEEEETTTTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEETT
T ss_pred             EEEEcCCCeEEEEeCC--------------EEEEEeCCcccccCCCccChhhcCCCCCC--CCCEEEEeCCeEEEEeCC
Confidence            4444446899999663              78999987654211     1    12232  234556668999999773

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=86.59  E-value=13  Score=30.88  Aligned_cols=28  Identities=11%  Similarity=0.224  Sum_probs=16.5

Q ss_pred             EeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      ..++++++.|......         ..+..||+.+.+
T Consensus       229 ~~~~~~l~~g~~~~~d---------~~i~iwd~~~~~  256 (402)
T 2aq5_A          229 VSEGKILTTGFSRMSE---------RQVALWDTKHLE  256 (402)
T ss_dssp             CSTTEEEEEEECTTCC---------EEEEEEETTBCS
T ss_pred             cCCCcEEEEeccCCCC---------ceEEEEcCcccc
Confidence            3467777776321111         278999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=86.38  E-value=6.9  Score=32.13  Aligned_cols=49  Identities=8%  Similarity=0.117  Sum_probs=24.0

Q ss_pred             CeeEEEECCCCCeeeCCCCC---CCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           35 AHTFVLDTETKKWQDLPPLP---VPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ..+.++|..+++-.......   ....-.++++. +++.++.|+.+     ..+..|+
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd  155 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWD  155 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEE
Confidence            45778888776532221111   01111222233 66777777754     3456665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.30  E-value=2.1  Score=35.18  Aligned_cols=53  Identities=9%  Similarity=0.088  Sum_probs=26.2

Q ss_pred             CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCc-ceeEE-eCCEEEEEccCC
Q 024009           66 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH-RACVV-VDDRLLVIGGQE  130 (274)
Q Consensus        66 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~-~~~~~-~~~~iyv~GG~~  130 (274)
                      ++++++.|+.+     ..+..|+.       .+..|+.+..+..-... ..++. -++++++.|+.+
T Consensus        22 ~g~~l~~~~~d-----~~i~iw~~-------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C           22 QRTEFVTTTAT-----NQVELYEQ-------DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             SSSEEECCCSS-----SCBCEEEE-------ETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred             CCCEEEEecCC-----CEEEEEEc-------cCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence            56677777643     45667763       34555554444321111 12222 245666666654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.30  E-value=16  Score=32.65  Aligned_cols=144  Identities=13%  Similarity=0.001  Sum_probs=73.0

Q ss_pred             CeeEEEECC-CCC---eeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCC
Q 024009           35 AHTFVLDTE-TKK---WQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR  109 (274)
Q Consensus        35 ~~~~~~d~~-~~~---W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~  109 (274)
                      .+++++|.. +++   ...+..-. .......+.. ++++|+.+..+.     ...     ++.+|..+.+++.+.+...
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~-----~~~-----l~~~~~~~~~~~~l~~~~~  285 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTG-----WWN-----LHRVDPATGAATQLCRREE  285 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTS-----SCE-----EEEECTTTCCEEESSCCSS
T ss_pred             cEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCC-----CeE-----EEEEECCCCceeecccccc
Confidence            579999998 563   33332210 1122233333 677776664331     112     3333455666766544221


Q ss_pred             CC----C---cceeEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceee
Q 024009          110 GG----P---HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFA  180 (274)
Q Consensus       110 ~~----~---~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~  180 (274)
                      ..    .   ...++.. ++++++.+.. .                    ...+|.+| .+.+.+.+..-   .... ..
T Consensus       286 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~--------------------~~~l~~~d~~~~~~~~l~~~---~~~~-~~  340 (662)
T 3azo_A          286 EFAGPLWTPGMRWFAPLANGLIAVVHGK-G--------------------AAVLGILDPESGELVDAAGP---WTEW-AA  340 (662)
T ss_dssp             BSSCCCCSTTCCSEEECTTSCEEEEEBS-S--------------------SCEEEEEETTTTEEEECCSS---CCEE-EE
T ss_pred             cccCccccccCceEeEeCCCEEEEEEEc-C--------------------ccEEEEEECCCCcEEEecCC---CCeE-EE
Confidence            11    0   0122332 5677766554 2                    25688777 55556555422   1111 12


Q ss_pred             E-EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009          181 W-VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI  223 (274)
Q Consensus       181 ~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~  223 (274)
                      + ...++.+++..+....         ...++.+|+.+.+.+.+
T Consensus       341 ~~s~~~~~~~~~~~~~~~---------~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          341 TLTVSGTRAVGVAASPRT---------AYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EEEEETTEEEEEEEETTE---------EEEEEEEETTTCCEEEE
T ss_pred             EEecCCCEEEEEEcCCCC---------CCEEEEEECCCCceEEe
Confidence            2 3456677666543221         23789999888887765

>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1

Probab=86.22  E-value=7.7  Score=29.91  Aligned_cols=54  Identities=26%  Similarity=0.394  Sum_probs=27.0

Q ss_pred             ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEcc
Q 024009           65 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  128 (274)
Q Consensus        65 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  128 (274)
                      .++++|+|=|...-......+...+     .+.+..|..   +|....  ++...++++|++-|
T Consensus        27 ~~g~~yfFkg~~~Wr~~~~~~~~~p-----~~Is~~wpg---LP~~ID--AA~~~~~~~yfFkG   80 (219)
T 1hxn_A           27 NHGATYVFSGSHYWRLDTNRDGWHS-----WPIAHQWPQ---GPSTVD--AAFSWEDKLYLIQD   80 (219)
T ss_dssp             TTSCEEEEETTEEEESSSSSCTTCC-----EEGGGTCTT---SCSSCS--EEEEETTEEEEEET
T ss_pred             CCCcEEEEeCCEEEEEcCCCCCCCc-----eEhhhhccC---CCCCcc--EEEEECCcEEEecC
Confidence            3789999987432211111110000     023344543   344333  44445899999977

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=86.20  E-value=5.2  Score=34.65  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=20.7

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ...++++|++-|.              ..|+||..+.+-..
T Consensus       411 ~~~~g~~YFFkg~--------------~ywr~d~~~~~v~~  437 (450)
T 1su3_A          411 FMKDGFFYFFHGT--------------RQYKFDPKTKRILT  437 (450)
T ss_dssp             EEETTEEEEEETT--------------EEEEEETTTTEEEE
T ss_pred             EEcCCeEEEEeCC--------------EEEEEECCcceEec
Confidence            4568999999764              78999988776554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=85.93  E-value=14  Score=30.87  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=28.6

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCC-ceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      +.++++|..+++...+-.+...... .+++.. +++.++.|+.+     ..+..|+
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd  175 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWD  175 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEE
Confidence            4688889888876655433322222 223333 66788888754     4566666

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=85.84  E-value=11  Score=29.46  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=26.9

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC---CC-CCCceEEEE--CCeEEEEc
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP---VP-RYAPATQLW--RGRLHVMG   73 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~---~~-r~~~~~~~~--~~~iyv~G   73 (274)
                      ++.+|+....        ...+.+||+.......++...   .. ..-..++..  +++||+.+
T Consensus        40 ~g~l~v~~~~--------~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~   95 (286)
T 1q7f_A           40 QNDIIVADTN--------NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE   95 (286)
T ss_dssp             TCCEEEEEGG--------GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEECC--------CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc
Confidence            5677877432        246888988754433333211   11 122344442  67899876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=85.28  E-value=12  Score=29.24  Aligned_cols=50  Identities=6%  Similarity=0.084  Sum_probs=28.0

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      ++.+|+....        -..+.+||+. +++...........-+.++.. ++.+|+...
T Consensus        25 ~g~l~v~~~~--------~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~   75 (299)
T 2z2n_A           25 KGKVWITQHK--------ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN   75 (299)
T ss_dssp             TSCEEEEETT--------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCCEEEEecC--------CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC
Confidence            6778886321        2568899988 776654321111222333332 678888753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=85.03  E-value=12  Score=30.12  Aligned_cols=51  Identities=6%  Similarity=-0.131  Sum_probs=25.6

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCC-ceEEEE-CCeEEEEcCCC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMGGSG   76 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~   76 (274)
                      ++++++.|+.+        ..+.++|..+.+-...-.  ..... .+++.. +++.++.|+.+
T Consensus        43 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           43 EGDLLFSCSKD--------SSASVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             TSCEEEEEESS--------SCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCEEEEEeCC--------CEEEEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEEEeCC
Confidence            55566666532        357788887765433211  11111 222222 56677776644

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=85.01  E-value=12  Score=30.36  Aligned_cols=22  Identities=0%  Similarity=0.250  Sum_probs=14.7

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL  218 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~  218 (274)
                      ++++++.|+..+            .+..||+.+.
T Consensus       116 ~~~~l~s~s~D~------------~v~iwd~~~~  137 (345)
T 3fm0_A          116 SGNLLATCSRDK------------SVWVWEVDEE  137 (345)
T ss_dssp             TSSEEEEEETTS------------CEEEEEECTT
T ss_pred             CCCEEEEEECCC------------eEEEEECCCC
Confidence            567777776533            6888887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=84.81  E-value=17  Score=30.69  Aligned_cols=51  Identities=8%  Similarity=-0.065  Sum_probs=27.1

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~  248 (274)
                      .++..++.|+..+            .+..||+.+.+-.  ..+............++..++.|+.
T Consensus       320 ~~~~~l~sg~~dg------------~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~l~s~s~  370 (464)
T 3v7d_B          320 HERKRCISASMDT------------TIRIWDLENGELM--YTLQGHTALVGLLRLSDKFLVSAAA  370 (464)
T ss_dssp             TTTTEEEEEETTS------------CEEEEETTTTEEE--EEECCCSSCEEEEEECSSEEEEEET
T ss_pred             CCCCEEEEEeCCC------------cEEEEECCCCcEE--EEEeCCCCcEEEEEEcCCEEEEEeC
Confidence            3456666766432            6899998776532  2232222223333445566666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=84.54  E-value=21  Score=32.95  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=40.4

Q ss_pred             ceEEeC-CCCCeEecCC---CCCCCccceeeEEE-eCCEEEEEeccCCCCCCcccccccCce-EEEEcCCCceEEec---
Q 024009          154 DVYMLD-DEMKWKVLPS---MPKPDSHIEFAWVL-VNNSIVIVGGTTEKHPTTKKMVLVGEI-FQFNLNTLKWHVIG---  224 (274)
Q Consensus       154 ~~~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~i-~~yd~~~~~W~~~~---  224 (274)
                      -++.|| .+.+++....   ++...-   .++.. .++.|++...              .-+ ++||+++++++...   
T Consensus       516 Gl~~~~~~~~~~~~~~~~~~l~~~~i---~~i~~d~~g~lWi~T~--------------~Glv~~~d~~~~~~~~~~~~~  578 (781)
T 3v9f_A          516 GVGIYTPDMQLVRKFNQYEGFCSNTI---NQIYRSSKGQMWLATG--------------EGLVCFPSARNFDYQVFQRKE  578 (781)
T ss_dssp             CEEEECTTCCEEEEECTTTTCSCSCE---EEEEECTTSCEEEEET--------------TEEEEESCTTTCCCEEECGGG
T ss_pred             CEEEEeCCCCeEEEccCCCCCCCCee---EEEEECCCCCEEEEEC--------------CCceEEECCCCCcEEEccccC
Confidence            367777 5666766543   222111   12222 3567777542              145 99999999887752   


Q ss_pred             cCCCccceeeeEE-EcCEEEEEc
Q 024009          225 KLPYRVKTTLAGY-WNGWLYFTS  246 (274)
Q Consensus       225 ~~p~~~~~~~~~~-~~~~l~~~G  246 (274)
                      .+|..... +++. -++.|++.+
T Consensus       579 gl~~~~i~-~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          579 GLPNTHIR-AISEDKNGNIWAST  600 (781)
T ss_dssp             TCSCCCCC-EEEECSSSCEEEEC
T ss_pred             CCCCceEE-EEEECCCCCEEEEc
Confidence            34443322 2222 257777664

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=84.53  E-value=13  Score=29.02  Aligned_cols=77  Identities=6%  Similarity=0.038  Sum_probs=36.6

Q ss_pred             ceEEeCCCCCeEecCCCCCCCccceeeEEE-eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCc-cc
Q 024009          154 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVL-VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYR-VK  231 (274)
Q Consensus       154 ~~~~~d~~~~W~~~~~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~-~~  231 (274)
                      .++.+|.+.+..... ++...... .+++. .++.+|+....            .+.+.+||+ +.+...+. ++.. ..
T Consensus       205 ~i~~~~~~g~~~~~~-~~~~~~~~-~~i~~~~~g~l~v~~~~------------~~~i~~~d~-~g~~~~~~-~~~~~~~  268 (299)
T 2z2n_A          205 KIGRITTSGEITEFK-IPTPNARP-HAITAGAGIDLWFTEWG------------ANKIGRLTS-NNIIEEYP-IQIKSAE  268 (299)
T ss_dssp             EEEEECTTCCEEEEE-CSSTTCCE-EEEEECSTTCEEEEETT------------TTEEEEEET-TTEEEEEE-CSSSSCC
T ss_pred             eEEEECCCCcEEEEE-CCCCCCCc-eeEEECCCCCEEEeccC------------CceEEEECC-CCceEEEe-CCCCCCc
Confidence            466676444444331 12111111 22333 35678877522            127999998 44554432 2211 12


Q ss_pred             eeeeEEEcCEEEEEc
Q 024009          232 TTLAGYWNGWLYFTS  246 (274)
Q Consensus       232 ~~~~~~~~~~l~~~G  246 (274)
                      ..+++..++.||+..
T Consensus       269 ~~~i~~~~g~l~v~~  283 (299)
T 2z2n_A          269 PHGICFDGETIWFAM  283 (299)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             cceEEecCCCEEEEe
Confidence            233333567888764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=83.68  E-value=15  Score=29.17  Aligned_cols=59  Identities=10%  Similarity=-0.006  Sum_probs=29.4

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++.+++.|+.+        ..+.++|..+.+-...-....... .++... ++++++.|+.+     ..+.+|+
T Consensus        24 ~~~~l~s~~~d--------g~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~s~d-----~~i~vwd   83 (304)
T 2ynn_A           24 TEPWVLTTLYS--------GRVELWNYETQVEVRSIQVTETPV-RAGKFIARKNWIIVGSDD-----FRIRVFN   83 (304)
T ss_dssp             SSSEEEEEETT--------SEEEEEETTTTEEEEEEECCSSCE-EEEEEEGGGTEEEEEETT-----SEEEEEE
T ss_pred             CCCEEEEEcCC--------CcEEEEECCCCceeEEeeccCCcE-EEEEEeCCCCEEEEECCC-----CEEEEEE
Confidence            55566666642        457788887765322211111111 122222 66677777654     3455555

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=83.64  E-value=20  Score=30.61  Aligned_cols=116  Identities=18%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             eeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCC--CceEEEECCeEEEEcCCCC----------C
Q 024009           11 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY--APATQLWRGRLHVMGGSGE----------N   78 (274)
Q Consensus        11 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~----------~   78 (274)
                      |+-..++.+|++--...++  +.=+.+.+-+.....|+.+-- |...+  ..-.+-+++.||+||-...          .
T Consensus       343 CvkyYdgvLyLtTRgt~~~--~~GS~L~rs~d~Gq~w~slrf-p~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~  419 (670)
T 3ju4_A          343 CIKYYDGVLYLITRGTRGD--RLGSSLHRSRDIGQTWESLRF-PHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDD  419 (670)
T ss_dssp             EEEEETTEEEEEEEESCTT--SCCCEEEEESSTTSSCEEEEC-TTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCC
T ss_pred             hhhhhCCEEEEEecCcCCC--CCcceeeeecccCCchhheec-cccccccCCCcceeCCEEEEEeccccccccccCCCcc
Confidence            3445699999995443333  234678888888889988742 22222  2333456999999996422          1


Q ss_pred             CC---CCCccceEeeeecCCCCCCceeeccC------CCCCCCc-ceeEEeCCEEEE-EccC
Q 024009           79 RY---TPEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPH-RACVVVDDRLLV-IGGQ  129 (274)
Q Consensus        79 ~~---~~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~~~~-~~~~~~~~~iyv-~GG~  129 (274)
                      +|   .+..-....-+.++....-+|.-+.+      .....++ .++|+.++-||. |||-
T Consensus       420 RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgE  481 (670)
T 3ju4_A          420 RYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGE  481 (670)
T ss_dssp             CSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEB
T ss_pred             cccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCc
Confidence            11   11111222233445556667776654      1222223 244566777654 5553

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=83.48  E-value=15  Score=29.06  Aligned_cols=48  Identities=10%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEE-CCeEEEE
Q 024009           15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLW-RGRLHVM   72 (274)
Q Consensus        15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~-~~~iyv~   72 (274)
                      ..+++++.|..        -..+.++|+++++  |+.-..-  ....+.+... +++|++.
T Consensus         3 ~~~~~lv~~~~--------~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilvs   53 (276)
T 3no2_A            3 SPQHLLVGGSG--------WNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILFS   53 (276)
T ss_dssp             CCCEEEEECTT--------CSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEEE
T ss_pred             CCCcEEEeeCC--------CCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEEe
Confidence            34677777642        2678889987775  6654321  1123444443 7888884

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=83.28  E-value=17  Score=29.68  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=14.8

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      ++.+++.|+...            .|..||+.+.+
T Consensus       238 ~~~~la~g~~d~------------~i~~wd~~~~~  260 (357)
T 4g56_B          238 KDDTFACGDETG------------NVSLVNIKNPD  260 (357)
T ss_dssp             STTEEEEEESSS------------CEEEEESSCGG
T ss_pred             ccceEEEeeccc------------ceeEEECCCCc
Confidence            356777775432            68888877654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=82.97  E-value=15  Score=28.66  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=26.1

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcC
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG   74 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG   74 (274)
                      ++++|+.+..       ....+.+||+....-..+.. +....-..++.. ++++|+...
T Consensus        88 ~g~l~v~~~~-------~~~~i~~~d~~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~  139 (286)
T 1q7f_A           88 SGDIIVTERS-------PTHQIQIYNQYGQFVRKFGA-TILQHPRGVTVDNKGRIIVVEC  139 (286)
T ss_dssp             TTEEEEEECG-------GGCEEEEECTTSCEEEEECT-TTCSCEEEEEECTTSCEEEEET
T ss_pred             CCeEEEEcCC-------CCCEEEEECCCCcEEEEecC-ccCCCceEEEEeCCCCEEEEEC
Confidence            6788887531       12567888855443333322 111112333333 668888753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=82.89  E-value=17  Score=29.17  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=17.3

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ++.+++.++..+            .+..||+.+.+-..
T Consensus       229 ~~~~l~~~~~d~------------~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          229 DLTYFITSSRDT------------NSFLVDVSTLQVLK  254 (369)
T ss_dssp             TSSEEEEEETTS------------EEEEEETTTCCEEE
T ss_pred             CCCEEEEecCCc------------eEEEEECCCCceee
Confidence            566666665422            78999988876544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=82.83  E-value=19  Score=29.76  Aligned_cols=24  Identities=21%  Similarity=0.148  Sum_probs=16.5

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW  220 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W  220 (274)
                      ++++++.|+..+            .+..||+.+.+-
T Consensus       258 ~~~~l~~~~~dg------------~i~i~d~~~~~~  281 (420)
T 3vl1_A          258 YGKYVIAGHVSG------------VITVHNVFSKEQ  281 (420)
T ss_dssp             TTEEEEEEETTS------------CEEEEETTTCCE
T ss_pred             CCCEEEEEcCCC------------eEEEEECCCCce
Confidence            567777776432            688999877653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=82.82  E-value=17  Score=29.11  Aligned_cols=24  Identities=4%  Similarity=-0.139  Sum_probs=14.4

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCe
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW   47 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W   47 (274)
                      +++.++.|+.+        ..+.++|..+++.
T Consensus        24 ~g~~lasgs~D--------~~v~lwd~~~~~~   47 (316)
T 3bg1_A           24 YGTRLATCSSD--------RSVKIFDVRNGGQ   47 (316)
T ss_dssp             GGCEEEEEETT--------TEEEEEEEETTEE
T ss_pred             CCCEEEEEeCC--------CeEEEEEecCCCc
Confidence            55666666642        4566777766543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=82.73  E-value=17  Score=29.57  Aligned_cols=61  Identities=13%  Similarity=0.072  Sum_probs=29.1

Q ss_pred             ceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009          154 DVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG  224 (274)
Q Consensus       154 ~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~  224 (274)
                      .+|..+ .+.+++.+...+....-... ...-+++.+++++......         .++.+|+++.+-+.+.
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~g~~~~~~-~~spdg~~l~~~~~~~~~v---------~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLTGIHPRNF-IITPNGKYLLVACRDTNVI---------QIFERDQATGLLTDIK  346 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEECSSCCCEE-EECTTSCEEEEEETTTTEE---------EEEEECTTTCCEEECS
T ss_pred             EEEEEcCCCCcEEEeeEecCCCCCceE-EECCCCCEEEEEECCCCCE---------EEEEEECCCCcEeecc
Confidence            455565 45666655443332111112 1233455444443222211         4666788888877763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=82.41  E-value=11  Score=29.93  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc----CEEEEEccc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN----GWLYFTSGQ  248 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~----~~l~~~GG~  248 (274)
                      .++.||+.....            ..|.+||+++.+....-.+|..+  ...+.+.    +.|||....
T Consensus       208 ~~G~lwva~~~~------------~~v~~~d~~tG~~~~~i~~p~~~--~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          208 AEGKLWVACYNG------------GRVIRLDPVTGKRLQTVKLPVDK--TTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             TTSCEEEEEETT------------TEEEEECTTTCCEEEEEECSSSB--EEEEEEESGGGCEEEEEEBC
T ss_pred             CCCCEEEEEcCC------------CEEEEEcCCCceEEEEEECCCCC--ceEEEEeCCCCCEEEEEcCC
Confidence            457888875321            16999999987765544455322  2333343    589988653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=82.36  E-value=31  Score=31.87  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             eEEeC-CCCCeEecC---CCCCCCccceeeEEE-eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccC
Q 024009          155 VYMLD-DEMKWKVLP---SMPKPDSHIEFAWVL-VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKL  226 (274)
Q Consensus       155 ~~~~d-~~~~W~~~~---~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~  226 (274)
                      ++.|| .+.+++...   .+|...-   .+++. .++.|++.+..              .+.+||+++.+++..   ..+
T Consensus       564 l~~~d~~~~~~~~~~~~~gl~~~~i---~~i~~d~~g~lWi~t~~--------------Gl~~~~~~~~~~~~~~~~dGl  626 (795)
T 4a2l_A          564 FYCFNEKDKQIKRYNTTNGLPNNVV---YGILEDSFGRLWLSTNR--------------GISCFNPETEKFRNFTESDGL  626 (795)
T ss_dssp             EEEEETTTTEEEEECGGGTCSCSCE---EEEEECTTSCEEEEETT--------------EEEEEETTTTEEEEECGGGTC
T ss_pred             ceeECCCCCcEEEeCCCCCCchhhe---EEEEECCCCCEEEEcCC--------------ceEEEcCCCCcEEEcCCcCCC
Confidence            66676 566666543   2333221   22232 25778887521              689999999988765   335


Q ss_pred             CCccce-eeeEEE-cCEEEEEccc
Q 024009          227 PYRVKT-TLAGYW-NGWLYFTSGQ  248 (274)
Q Consensus       227 p~~~~~-~~~~~~-~~~l~~~GG~  248 (274)
                      +..... .+++.. ++.||+ ||.
T Consensus       627 ~~~~f~~~~~~~~~~G~l~~-g~~  649 (795)
T 4a2l_A          627 QSNQFNTASYCRTSVGQMYF-GGI  649 (795)
T ss_dssp             SCSCEEEEEEEECTTSCEEE-EET
T ss_pred             ccccCccCceeECCCCeEEE-ecC
Confidence            544432 233333 567664 443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=82.01  E-value=16  Score=28.39  Aligned_cols=49  Identities=8%  Similarity=-0.024  Sum_probs=26.8

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEc
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMG   73 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G   73 (274)
                      ++.+|+....        ...+.+||+. +++...........-+.++.. ++++|+..
T Consensus        72 ~g~l~v~~~~--------~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  121 (300)
T 2qc5_A           72 LGDIWFTENG--------ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQ  121 (300)
T ss_dssp             TSCEEEEETT--------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCEEEEecC--------CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEc
Confidence            5677776321        2568899988 666544211111222333333 67888875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=81.79  E-value=17  Score=30.34  Aligned_cols=14  Identities=14%  Similarity=-0.009  Sum_probs=10.4

Q ss_pred             ceEEEEcCCCceEE
Q 024009          209 EIFQFNLNTLKWHV  222 (274)
Q Consensus       209 ~i~~yd~~~~~W~~  222 (274)
                      .|..||+.+.+-..
T Consensus       302 ~I~iwd~~t~~~~~  315 (420)
T 4gga_A          302 HIRIWNVCSGACLS  315 (420)
T ss_dssp             EEEEEETTTTEEEE
T ss_pred             EEEEEeCCccccce
Confidence            68899988876443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=81.65  E-value=12  Score=36.45  Aligned_cols=49  Identities=4%  Similarity=0.010  Sum_probs=23.6

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceE
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ..+.+||..+.+...............+..-+++.++.|+.+     ..+..|+
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-----g~i~vwd 1031 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-----SVIQVWN 1031 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-----SBEEEEE
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-----CEEEEEE
Confidence            356788887765433222111111222222266667777644     3455565

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=81.10  E-value=20  Score=28.84  Aligned_cols=30  Identities=7%  Similarity=0.237  Sum_probs=19.3

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccC
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKL  226 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~  226 (274)
                      ++.+++.|+..+            .+..||..+..|+.+..+
T Consensus       164 ~~~~l~s~s~D~------------~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          164 SEALLASSSYDD------------TVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             SSSEEEEEETTS------------CEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEcCCC------------eEEEEECCCCCeeEEEEc
Confidence            466777776533            677888777777655433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=80.91  E-value=23  Score=29.53  Aligned_cols=59  Identities=15%  Similarity=0.105  Sum_probs=30.5

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceE
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      ++.+++.|+.+        ..+.++|..+.+....-..+.. .-.+++.. ++++++.|+.+     ..+..|+
T Consensus       119 ~~~~l~s~s~D--------g~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~D-----~~i~iwd  178 (410)
T 1vyh_C          119 VFSVMVSASED--------ATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSAD-----MTIKLWD  178 (410)
T ss_dssp             SSSEEEEEESS--------SCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETT-----SCCCEEE
T ss_pred             CCCEEEEEeCC--------CeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCCCEEEEEeCC-----CeEEEEe
Confidence            44566666642        3577888887654332111111 11222222 56778887755     4466666

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=80.77  E-value=6.5  Score=30.52  Aligned_cols=21  Identities=5%  Similarity=0.108  Sum_probs=16.6

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL  218 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~  218 (274)
                      .++++|++-|.              ..|+||..+.
T Consensus       182 ~~g~~YfFkg~--------------~Ywr~d~~~~  202 (227)
T 3lp9_A          182 KTNEVYFFKDD--------------HYARVKVTPX  202 (227)
T ss_dssp             STTEEEEEETT--------------EEEEEECCSS
T ss_pred             CCceEEEEECC--------------EEEEEECCcc
Confidence            35899999764              7899998776

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=80.69  E-value=23  Score=29.25  Aligned_cols=40  Identities=15%  Similarity=0.077  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCc--eEEeccCCCccceeeeEEEcCEEEEEcccc
Q 024009          209 EIFQFNLNTLK--WHVIGKLPYRVKTTLAGYWNGWLYFTSGQR  249 (274)
Q Consensus       209 ~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~  249 (274)
                      .+..||+.+.+  -..+.... ...-..+...++.+++.|+.+
T Consensus       314 ~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d  355 (420)
T 3vl1_A          314 MLAQWDLRSPECPVGEFLINE-GTPINNVYFAAGALFVSSGFD  355 (420)
T ss_dssp             EEEEEETTCTTSCSEEEEEST-TSCEEEEEEETTEEEEEETTT
T ss_pred             eEEEEEcCCCcCchhhhhccC-CCCceEEEeCCCCEEEEecCC
Confidence            78999988753  22322111 111222333467777777643

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=80.67  E-value=17  Score=27.86  Aligned_cols=48  Identities=23%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-----e----ccCCCccceeeeEEEc--CEEEEEcc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-----I----GKLPYRVKTTLAGYWN--GWLYFTSG  247 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-----~----~~~p~~~~~~~~~~~~--~~l~~~GG  247 (274)
                      .++++|++-|.              ..|+||..+++-..     +    ..+|.  ...++...+  +.+|+|-|
T Consensus       134 ~~g~~YfFkG~--------------~ywr~d~~~~~v~~gyPr~i~~~w~g~p~--~idaAf~~~~~g~~YfFkg  192 (218)
T 1gen_A          134 KNKKTYIFAGD--------------KFWRYNEVKKKMDPGFPKLIADAWNAIPD--NLDAVVDLQGGGHSYFFKG  192 (218)
T ss_dssp             TTTEEEEEETT--------------EEEEEETTTTEECSSCCEEHHHHSSSCCS--SCSEEEECTTTCEEEEEET
T ss_pred             CCCeEEEEECC--------------EEEEEECccccccCCCCcchhhccCCCCC--CCCEEEEEcCCCcEEEEEC
Confidence            46899999764              79999987764321     1    12222  234445554  89999976

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=80.32  E-value=35  Score=31.50  Aligned_cols=37  Identities=19%  Similarity=0.131  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCceEEec---cCCCccceeeeEEE-cCEEEEEc
Q 024009          209 EIFQFNLNTLKWHVIG---KLPYRVKTTLAGYW-NGWLYFTS  246 (274)
Q Consensus       209 ~i~~yd~~~~~W~~~~---~~p~~~~~~~~~~~-~~~l~~~G  246 (274)
                      .+++||+++++++...   .+|.... .+++.- ++.|++.+
T Consensus       563 Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t  603 (795)
T 4a2l_A          563 GFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLST  603 (795)
T ss_dssp             CEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEE
T ss_pred             CceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEc
Confidence            4899999999887752   3444322 222222 46777664

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=80.13  E-value=21  Score=28.49  Aligned_cols=16  Identities=13%  Similarity=0.426  Sum_probs=10.0

Q ss_pred             CeeEEEECCCCCeeeC
Q 024009           35 AHTFVLDTETKKWQDL   50 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~   50 (274)
                      ..+.++|..+.+|..+
T Consensus        81 ~~v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           81 RKVIIWREENGTWEKS   96 (316)
T ss_dssp             SCEEEECCSSSCCCEE
T ss_pred             CEEEEEECCCCcceEE
Confidence            3466777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	5e-04
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-05
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-04
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	0.003

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
          GR IY   G +    R   ++    +     W  L  L VPR   A  +  G L+ +GG 
Sbjct: 4  GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

Query: 76 GENRYTPEVDHW 87
            +         
Sbjct: 60 NNSPDGNTDSSA 71

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 5e-04
 Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 25/151 (16%)

Query: 27  GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH 86
           G               E  +W+ +  +   R      +    ++  GG         V+ 
Sbjct: 156 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER 215

Query: 87  WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR 146
           +           + W    P+          V   R+ V+GG +G               
Sbjct: 216 Y-------DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-------------- 254

Query: 147 RNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 176
                 D V   D D   W  +  M    S 
Sbjct: 255 ---TFLDSVECYDPDTDTWSEVTRMTSGRSG 282

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 22/206 (10%), Positives = 54/206 (26%), Gaps = 23/206 (11%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGP--QCRGPTAHTFVLDTETKKWQDLPPLPVPRY 58
           +   +     G+     + ++   + G   Q    TA  +   + +   +        R 
Sbjct: 167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 226

Query: 59  ---------APATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 109
                    A      +G++   GGS + + +    +  +                    
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY 286

Query: 110 GGPHRACVV--VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVL 167
                   V   D    + GGQ      +  +P+F        +Y       ++  +   
Sbjct: 287 FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP-----EIYVP-----EQDTFYKQ 336

Query: 168 PSMPKPDSHIEFAWVLVNNSIVIVGG 193
                   +   + +L +  +   GG
Sbjct: 337 NPNSIVRVYHSISLLLPDGRVFNGGG 362

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 6/87 (6%)

Query: 1   MPREMAHSHLGMVTDGRYIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLPPLPVPR 57
           +          ++ DG   ++  GQ          P     +   E   +    P  + R
Sbjct: 285 LYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 343

Query: 58  Y--APATQLWRGRLHVMGGSGENRYTP 82
              + +  L  GR+   GG      T 
Sbjct: 344 VYHSISLLLPDGRVFNGGGGLCGDCTT 370

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 3/97 (3%)

Query: 46  KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR--T 103
           +W     LP+   A A +   GR+ +      + +       +L      P        T
Sbjct: 10  RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSS-WDPSTGIVSDRT 68

Query: 104 EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSP 140
                         +  +  +V+ G            
Sbjct: 69  VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.95
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.86
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	94.14
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.87
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.85
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	93.71
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.39
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	93.12
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.8
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	91.79
d1hxna_	210	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	91.65
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	89.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	89.44
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	89.03
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.37
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	88.06
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	87.81
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.77
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	86.33
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	85.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	85.92
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	84.18
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	82.79
d1tbga_	340	beta1-subunit of the signal-transducing G protein	80.78
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	80.05

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=244.12  Aligned_cols=239  Identities=18%  Similarity=0.314  Sum_probs=205.1

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCC-CCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQ-CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRY   80 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~   80 (274)
                      |+|.+|.+|+++.++++|||+||..... .....+++++||+.+++|+.++++|.+|..|+++.++++||++||......
T Consensus        36 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~  115 (288)
T d1zgka1          36 DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH  115 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEE
T ss_pred             CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccccceeeEEecceecccc
Confidence            5788999999999999999999985321 123568999999999999999999999999999999999999999876655


Q ss_pred             CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009           81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  159 (274)
Q Consensus        81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-  159 (274)
                      ....+.++       +.+++|...+.++..+.+++++..++++|++||.....                 ...+++.|| 
T Consensus       116 ~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~-----------------~~~~~~~~d~  171 (288)
T d1zgka1         116 HNSVERYE-------PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-----------------RLNSAECYYP  171 (288)
T ss_dssp             CCCEEEEE-------TTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCCEEEEET
T ss_pred             cceeeeec-------cccCccccccccccccccceeeeeeecceEecCccccc-----------------ccceEEEeec
Confidence            55555554       78999999999999999999999999999999976441                 246788998 


Q ss_pred             CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc
Q 024009          160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN  239 (274)
Q Consensus       160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  239 (274)
                      .+++|...+..+..+..  ++++..+++|+++||.....       .++..+.||+.+++|+.++++|.+|..++++.++
T Consensus       172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~GG~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  242 (288)
T d1zgka1         172 ERNEWRMITAMNTIRSG--AGVCVLHNCIYAAGGYDGQD-------QLNSVERYDVETETWTFVAPMKHRRSALGITVHQ  242 (288)
T ss_dssp             TTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred             ccccccccccccccccc--ccccceeeeEEEecCccccc-------cccceeeeeecceeeecccCccCcccceEEEEEC
Confidence            89999999988888876  56689999999999987655       3668999999999999999999999999999999


Q ss_pred             CEEEEEccccCCC-CCCCCceeecCCeeeeeeccC
Q 024009          240 GWLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLLN  273 (274)
Q Consensus       240 ~~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~~  273 (274)
                      ++|||+||.+... ..+..+|++.++.|+...+|.
T Consensus       243 ~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         243 GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             CEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            9999999987655 344578999999999987764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-31  Score=220.59  Aligned_cols=225  Identities=17%  Similarity=0.282  Sum_probs=185.4

Q ss_pred             eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecC
Q 024009           15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG   94 (274)
Q Consensus        15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~   94 (274)
                      .++.|||+||...    ..++++++||+++++|++++++|.+|.+|+++.++++|||+||...... .  .....+++.|
T Consensus         3 ~g~~iyv~GG~~~----~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-~--~~~~~~~~~y   75 (288)
T d1zgka1           3 VGRLIYTAGGYFR----QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD-G--NTDSSALDCY   75 (288)
T ss_dssp             CCCCEEEECCBSS----SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETT-E--EEECCCEEEE
T ss_pred             cCCEEEEECCcCC----CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCC-C--ccccchhhhc
Confidence            4678999999853    3578999999999999999999999999999999999999999642211 0  0111133444


Q ss_pred             CCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCC
Q 024009           95 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKP  173 (274)
Q Consensus        95 d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~  173 (274)
                      |+.+++|+.++++|.+|..|+++.++++||++||....                 ..+.+.+.|+ .+.+|...+.++.+
T Consensus        76 d~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~  138 (288)
T d1zgka1          76 NPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-----------------IHHNSVERYEPERDEWHLVAPMLTR  138 (288)
T ss_dssp             ETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-----------------EECCCEEEEETTTTEEEECCCCSSC
T ss_pred             ccccccccccccccceecceeccccceeeEEecceecc-----------------cccceeeeeccccCccccccccccc
Confidence            58999999999999999999999999999999997643                 2356788888 89999999999998


Q ss_pred             CccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCC-
Q 024009          174 DSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKG-  252 (274)
Q Consensus       174 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~-  252 (274)
                      |..  ++++..+++++++||.....       ....++.||+.+++|......+..+..++++..+++|+++||..... 
T Consensus       139 r~~--~~~~~~~~~~~~~GG~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~  209 (288)
T d1zgka1         139 RIG--VGVAVLNRLLYAVGGFDGTN-------RLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ  209 (288)
T ss_dssp             CBS--CEEEEETTEEEEECCBCSSC-------BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSB
T ss_pred             ccc--ceeeeeeecceEecCccccc-------ccceEEEeeccccccccccccccccccccccceeeeEEEecCcccccc
Confidence            887  55688899999999986654       35689999999999999999999999999999999999999987765 


Q ss_pred             CCCCCceeecCCeeeeeecc
Q 024009          253 PDDPAPRKVHGDMWRTKLLL  272 (274)
Q Consensus       253 ~~~~~~~~~~~~~W~~~~~~  272 (274)
                      ......+++..+.|....++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~  229 (288)
T d1zgka1         210 LNSVERYDVETETWTFVAPM  229 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCC
T ss_pred             ccceeeeeecceeeecccCc
Confidence            34556677788888876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.95  E-value=6.7e-27  Score=199.57  Aligned_cols=236  Identities=12%  Similarity=0.084  Sum_probs=158.2

Q ss_pred             CCCCCcCceeeEEeCCEEEEEcCcCCCCCC---CCCCeeEEEECCCCCeeeCCCCCCCCC--CceEEEE-CCeEEEEcCC
Q 024009            2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCR---GPTAHTFVLDTETKKWQDLPPLPVPRY--APATQLW-RGRLHVMGGS   75 (274)
Q Consensus         2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~~d~~~~~W~~~~~~~~~r~--~~~~~~~-~~~iyv~GG~   75 (274)
                      |+|..|.+++++..+++||++||.......   ..+..+++||+.+++|+..++++.+|.  .++.++. +++||++||.
T Consensus        16 ~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~   95 (387)
T d1k3ia3          16 DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN   95 (387)
T ss_dssp             ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred             CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC
Confidence            567778788888889999999998544321   234568899999999999887666554  3444444 8899999986


Q ss_pred             CCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEe-CCEEEEEccCCCCCCCCCCCCccccc---------
Q 024009           76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCS---------  145 (274)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~---------  145 (274)
                      ..    .++++|+       +.+++|+..++++.+|..|+++.. +++||++||...........+++...         
T Consensus        96 ~~----~~~~~yd-------~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~  164 (387)
T d1k3ia3          96 DA----KKTSLYD-------SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN  164 (387)
T ss_dssp             ST----TCEEEEE-------GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred             CC----cceeEec-------CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCC
Confidence            53    3455555       899999999999999988887776 67999999864432110000000000         


Q ss_pred             --------------------------cCcee-----ecCceEEeC-----------------------------------
Q 024009          146 --------------------------RRNEV-----VYDDVYMLD-----------------------------------  159 (274)
Q Consensus       146 --------------------------~~~~~-----~~~~~~~~d-----------------------------------  159 (274)
                                                .....     ...+++.++                                   
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  244 (387)
T d1k3ia3         165 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  244 (387)
T ss_dssp             SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             CcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCC
Confidence                                      00000     001111111                                   


Q ss_pred             ------------------------------CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCc
Q 024009          160 ------------------------------DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGE  209 (274)
Q Consensus       160 ------------------------------~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  209 (274)
                                                    ....|+.+.+||.+|..+ ++++..+++|||+||.......+. ...+.+
T Consensus       245 ~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~~~dg~i~v~GG~~~~~~~~~-~~~~~~  322 (387)
T d1k3ia3         245 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH-TSVVLPDGSTFITGGQRRGIPFED-STPVFT  322 (387)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC-EEEECTTSCEEEECCBSBCCTTCC-CSBCCC
T ss_pred             ceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc-eeeeccCCeEEEECCcccCccCCC-CcEece
Confidence                                          122456666778887764 233444789999999764432211 113557


Q ss_pred             eEEEEcCCCceEEeccCCCccceeeeEEE--cCEEEEEccccC
Q 024009          210 IFQFNLNTLKWHVIGKLPYRVKTTLAGYW--NGWLYFTSGQRD  250 (274)
Q Consensus       210 i~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~~~GG~~~  250 (274)
                      +++||+++++|++++++|.+|..|+++++  +++|||+||...
T Consensus       323 ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~  365 (387)
T d1k3ia3         323 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC  365 (387)
T ss_dssp             CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred             EEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCc
Confidence            89999999999999999999998887777  889999999543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.86  E-value=1.7e-20  Score=159.36  Aligned_cols=197  Identities=13%  Similarity=0.115  Sum_probs=136.0

Q ss_pred             CCCCCcCceeeEEe-CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC-------------------------
Q 024009            2 PREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV-------------------------   55 (274)
Q Consensus         2 p~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~-------------------------   55 (274)
                      +++.+|..|+++++ ++++|++||.....  ...+++++||+.+++|+.++.+..                         
T Consensus       115 ~~~~~r~~~~~~~~~dG~v~v~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (387)
T d1k3ia3         115 DMQVARGYQSSATMSDGRVFTIGGSWSGG--VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK  192 (387)
T ss_dssp             CCSSCCSSCEEEECTTSCEEEECCCCCSS--SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred             cccccccccceeeecCCceeeeccccccc--cccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCC
Confidence            35678888888877 67999999986544  357889999999999988653221                         


Q ss_pred             --------------------------------------CCCCceEEE--ECCeEEEEcCCCCCCCCC-CccceEeeeecC
Q 024009           56 --------------------------------------PRYAPATQL--WRGRLHVMGGSGENRYTP-EVDHWSLAVKDG   94 (274)
Q Consensus        56 --------------------------------------~r~~~~~~~--~~~~iyv~GG~~~~~~~~-~~~~~~~~~~~~   94 (274)
                                                            ++..+++..  .++++|++||........ .......+++.+
T Consensus       193 G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~  272 (387)
T d1k3ia3         193 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  272 (387)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             CCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccccc
Confidence                                                  111122222  267899999975433222 223333455666


Q ss_pred             CCCCCceeeccCCCCCCCcceeEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCC
Q 024009           95 KPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK  172 (274)
Q Consensus        95 d~~~~~W~~~~~~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~  172 (274)
                      +...++|....++|.+|..+++++. +++|||+||......           .........++.|| .+++|+.+++++.
T Consensus       273 ~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~-----------~~~~~~~~~ve~Ydp~~~~W~~~~~~~~  341 (387)
T d1k3ia3         273 GTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-----------FEDSTPVFTPEIYVPEQDTFYKQNPNSI  341 (387)
T ss_dssp             TSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-----------TCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred             ccCCCceeeccccccccccceeeeccCCeEEEECCcccCcc-----------CCCCcEeceEEEEECCCCeEEECCCCCC
Confidence            6778889999999999988877776 679999999754311           01122234567778 8999999999999


Q ss_pred             CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEc
Q 024009          173 PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL  215 (274)
Q Consensus       173 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~  215 (274)
                      +|..|+.+++..+++|||+||........    ...++++|||
T Consensus       342 ~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~----~~~~~e~y~P  380 (387)
T d1k3ia3         342 VRVYHSISLLLPDGRVFNGGGGLCGDCTT----NHFDAQIFTP  380 (387)
T ss_dssp             CCCTTEEEEECTTSCEEEEECCCCTTCSC----CCCEEEEEEC
T ss_pred             cccceEEEEECCCCEEEEEeCCCcCCCCc----ccceEEEEcc
Confidence            99887554445589999999964433221    2457899987

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.66  Score=33.44  Aligned_cols=139  Identities=17%  Similarity=0.225  Sum_probs=71.8

Q ss_pred             ceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEe--CCEEEEEccCCCCCCCCC
Q 024009           60 PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEGDFMAKP  137 (274)
Q Consensus        60 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~  137 (274)
                      -+++..+|++|+|-|...-+...........     ..+..|.   .+|....  ++...  ++++|++-|         
T Consensus        15 DAv~~~~G~~y~Fkg~~~wr~~~~~~~~~p~-----~i~~~w~---glp~~ID--AAf~~~~~~~~yfFkG---------   75 (195)
T d1su3a2          15 DAITTIRGEVMFFKDRFYMRTNPFYPEVELN-----FISVFWP---QLPNGLE--AAYEFADRDEVRFFKG---------   75 (195)
T ss_dssp             SEEEEETTEEEEEETTEEEECCTTSSSCEEE-----EGGGTCT---TSCSSCC--EEEEEGGGTEEEEEET---------
T ss_pred             eEEEEcCCeEEEEeCCEEEEeeCCCCccCcc-----chHhhCc---CCCCccc--ceEEecCCcEEEEECC---------
Confidence            3556679999999874211111111111100     2234453   3444443  33333  578999987         


Q ss_pred             CCCccccccCceeecCceEEeC-CCC---CeEecC---CCCCCCccceeeEEE-eCCEEEEEeccCCCCCCcccccccCc
Q 024009          138 GSPIFKCSRRNEVVYDDVYMLD-DEM---KWKVLP---SMPKPDSHIEFAWVL-VNNSIVIVGGTTEKHPTTKKMVLVGE  209 (274)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~d-~~~---~W~~~~---~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~  209 (274)
                                     ...|.|+ .+.   --..+.   .+|.......++... .++++|++-|.              .
T Consensus        76 ---------------~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------------~  126 (195)
T d1su3a2          76 ---------------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------------K  126 (195)
T ss_dssp             ---------------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------------E
T ss_pred             ---------------cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC--------------E
Confidence                           3466665 211   112221   234333333333232 25799999764              7


Q ss_pred             eEEEEcCCCceE-----Ee----ccCCCccceeeeEEEcCEEEEEccc
Q 024009          210 IFQFNLNTLKWH-----VI----GKLPYRVKTTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       210 i~~yd~~~~~W~-----~~----~~~p~~~~~~~~~~~~~~l~~~GG~  248 (274)
                      .|+||..+++-.     .|    ..+|...  .++...++++|+|-|.
T Consensus       127 y~ry~~~~~~vd~gyPk~I~~~w~Gvp~~i--DAAf~~~g~~YfFkg~  172 (195)
T d1su3a2         127 YWRYDEYKRSMDPGYPKMIAHDFPGIGHKV--DAVFMKDGFFYFFHGT  172 (195)
T ss_dssp             EEEEETTTTEECSSCSEEHHHHSTTSCSCC--SEEEEETTEEEEEETT
T ss_pred             EEEEeccCccccCCcccccccccCCCCCCc--cEEEEECCeEEEEECC
Confidence            899998876432     12    2344333  3445679999999773

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.74  Score=33.05  Aligned_cols=27  Identities=15%  Similarity=0.156  Sum_probs=20.9

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV  222 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~  222 (274)
                      ...++++|++-|.              ..++||..+++-..
T Consensus       156 ~~~~g~~YfF~g~--------------~y~r~~~~~~~v~~  182 (192)
T d1pexa_         156 YEKNGYIYFFNGP--------------IQFEYSIWSNRIVR  182 (192)
T ss_dssp             EEETTEEEEEETT--------------EEEEEETTTTEEEE
T ss_pred             EEeCCEEEEEECC--------------EEEEEeCCcCeEcc
Confidence            4578999999764              78999988876544

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.75  Score=33.02  Aligned_cols=47  Identities=17%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE-----Ee----ccCCCccceeeeEEEcCEEEEEcc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH-----VI----GKLPYRVKTTLAGYWNGWLYFTSG  247 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~-----~~----~~~p~~~~~~~~~~~~~~l~~~GG  247 (274)
                      ++++|++-|.              ..++||..++.-.     .+    +.+|...  .++...++++|+|-|
T Consensus       112 ~~~~y~Fkg~--------------~y~~y~~~~~~~~~~~pk~I~~~w~gvp~~v--dAa~~~~g~~YfF~g  167 (192)
T d1pexa_         112 TGKTLLFSGN--------------QVWRYDDTNHIMDKDYPRLIEEDFPGIGDKV--DAVYEKNGYIYFFNG  167 (192)
T ss_dssp             TSEEEEEETT--------------EEEEEETTTTEECSSCCCBHHHHSTTSCSCC--SEEEEETTEEEEEET
T ss_pred             CCEEEEEeCC--------------EEEEEcCccccccCCCcEEHhhcCCCCCCCc--eEEEEeCCEEEEEEC
Confidence            5899999664              7899987766421     12    2334332  344567999999976

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.13  Score=37.52  Aligned_cols=63  Identities=11%  Similarity=0.189  Sum_probs=38.4

Q ss_pred             CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE-----Ee----ccCCCccceeeeEEEcC
Q 024009          170 MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH-----VI----GKLPYRVKTTLAGYWNG  240 (274)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~-----~~----~~~p~~~~~~~~~~~~~  240 (274)
                      +|.......++....++++|++=|.              ..++||..+++-.     .+    ..+|..  -.++...++
T Consensus        94 ~p~~~~~idaa~~~~~g~~Y~FkG~--------------~y~ryd~~~~~v~~gyPk~i~~~w~gvp~~--idaAf~~~~  157 (195)
T d1itva_          94 LGADVAQVTGALRSGRGKMLLFSGR--------------RLWRFDVKAQMVDPRSASEVDRMFPGVPLD--THDVFQFRE  157 (195)
T ss_dssp             CCTTCCCCCEEEECSTTEEEEEETT--------------EEEEEETTTTEECGGGCEEHHHHSTTSCSS--CSEEEEETT
T ss_pred             CCCCchheeeEEEcCCCeEEEEecc--------------EEEEEeCCcccccCCCccchhhhcCCCCCC--CcEEEEeCC
Confidence            3333333334444456899999654              7899998877432     22    224432  345566789


Q ss_pred             EEEEEccc
Q 024009          241 WLYFTSGQ  248 (274)
Q Consensus       241 ~l~~~GG~  248 (274)
                      .+|+|-|.
T Consensus       158 ~~Yffkg~  165 (195)
T d1itva_         158 KAYFCQDR  165 (195)
T ss_dssp             EEEEEETT
T ss_pred             cEEEEECC
Confidence            99999773

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.92  Score=32.63  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI  223 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~  223 (274)
                      ...++++|++-|.              ..++||..+.+-..+
T Consensus       160 f~~~g~~YfFkg~--------------~y~r~~~~~~~v~~~  187 (195)
T d1su3a2         160 FMKDGFFYFFHGT--------------RQYKFDPKTKRILTL  187 (195)
T ss_dssp             EEETTEEEEEETT--------------EEEEEETTTTEEEEE
T ss_pred             EEECCeEEEEECC--------------EEEEEeCCcCEEEec
Confidence            4568999999764              789999887765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.12  E-value=0.49  Score=37.25  Aligned_cols=95  Identities=14%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC-CCCCceEEEE-CCeEEEEcCCCCCCCCCCccceEeeeec
Q 024009           16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKD   93 (274)
Q Consensus        16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~   93 (274)
                      +++++++|+.        -..+.+||..++++..+..+.. ...-.++... +++.++.||.+     ..+.+|+     
T Consensus        18 dg~~la~~~~--------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd-----   79 (371)
T d1k8kc_          18 DRTQIAICPN--------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWT-----   79 (371)
T ss_dssp             TSSEEEEECS--------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEE-----
T ss_pred             CCCEEEEEeC--------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEe-----
Confidence            5566667653        1457889998888877654421 1111233333 56766777643     4566776     


Q ss_pred             CCCCCCceeeccCCCCCCCcceeEEe--CCEEEEEccCC
Q 024009           94 GKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQE  130 (274)
Q Consensus        94 ~d~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~  130 (274)
                        ..+.+|.....+.........+.+  +++.++.|+.+
T Consensus        80 --~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d  116 (371)
T d1k8kc_          80 --LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS  116 (371)
T ss_dssp             --EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             --ecccccccccccccccccccccccccccccceeeccc
Confidence              346666654443322211122222  45555555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.80  E-value=1.5  Score=33.53  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=31.5

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc----CEEEEEccc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN----GWLYFTSGQ  248 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~----~~l~~~GG~  248 (274)
                      .++.||+..-..            ..|.+||++.....++ ++|.++  .+.++++    +.|||....
T Consensus       208 ~~GnlWva~~~~------------g~V~~~dp~G~~~~~i-~lP~~~--~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         208 AEGHIWNARWGE------------GAVDRYDTDGNHIARY-EVPGKQ--TTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TTSCEEEEEETT------------TEEEEECTTCCEEEEE-ECSCSB--EEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCEEeeeeCC------------CceEEecCCCcEeeEe-cCCCCc--eEEEEEeCCCCCEEEEEECC
Confidence            467888863211            1699999987766665 556543  4555553    579987543

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.79  E-value=0.91  Score=32.58  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe--ccCCCccceeeeEEEcCEEEEEcc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI--GKLPYRVKTTLAGYWNGWLYFTSG  247 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~--~~~p~~~~~~~~~~~~~~l~~~GG  247 (274)
                      ++++|++-|.              ..++||..+..=..-  +.+|.   ..++...++++|+|-|
T Consensus       110 ~~~~yfFkg~--------------~yw~yd~~~~~~~~~~w~gip~---~daA~~~~g~~YfFkg  157 (192)
T d1qhua1         110 DEGILFFQGN--------------RKWFWDLTTGTKKERSWPAVGN---CTSALRWLGRYYCFQG  157 (192)
T ss_dssp             SSEEEEEETT--------------EEEEEETTTTEEEEECCTTSCC---CSEEEEETTEEEEEET
T ss_pred             CCeEEEEeCC--------------eEEEEeCCCCCcccccccCcCC---cceeEEeCCcEEEEEC
Confidence            7899999764              789999887631111  33332   2355567899999977

>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.65  E-value=0.53  Score=34.45  Aligned_cols=54  Identities=26%  Similarity=0.416  Sum_probs=28.5

Q ss_pred             ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEcc
Q 024009           65 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  128 (274)
Q Consensus        65 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG  128 (274)
                      .+|++|+|-|...-+...........     +.+..|..+   |....  ++...++++|++-|
T Consensus        18 ~~G~~y~Fkg~~~wr~~~~~~~~~p~-----~I~~~W~~l---p~~ID--AA~~~~~~~yfFkG   71 (210)
T d1hxna_          18 NHGATYVFSGSHYWRLDTNRDGWHSW-----PIAHQWPQG---PSTVD--AAFSWEDKLYLIQD   71 (210)
T ss_dssp             TTSCEEEEETTEEEESSSSSCTTCCE-----EGGGTCTTS---CSSCS--EEEEETTEEEEEET
T ss_pred             CCCCEEEEECCEEEEEcCCCCCCCcc-----cHHHhcCCC---Ccccc--eEEEeCCeEEEEec
Confidence            48899999874321111111111110     234556443   43333  45567889999977

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.64  E-value=2.1  Score=30.50  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=19.6

Q ss_pred             EEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009          181 WVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK  219 (274)
Q Consensus       181 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~  219 (274)
                      +...++++|++-|.              ..++||..+.+
T Consensus       145 A~~~~g~~YfFkg~--------------~y~r~~~~~~~  169 (192)
T d1qhua1         145 ALRWLGRYYCFQGN--------------QFLRFNPVSGE  169 (192)
T ss_dssp             EEEETTEEEEEETT--------------EEEEECTTTCC
T ss_pred             eEEeCCcEEEEECC--------------EEEEEcCCcce
Confidence            35678999999664              78999887765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=3.1  Score=30.92  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE
Q 024009          182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH  221 (274)
Q Consensus       182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~  221 (274)
                      ...++.+++.|+..+            .|..||+.+.+-.
T Consensus       266 ~~~~~~~~~s~s~Dg------------~i~iwd~~tg~~i  293 (342)
T d2ovrb2         266 LQFNKNFVITSSDDG------------TVKLWDLKTGEFI  293 (342)
T ss_dssp             EEECSSEEEEEETTS------------EEEEEETTTCCEE
T ss_pred             cccCCCeeEEEcCCC------------EEEEEECCCCCEE
Confidence            455667777776432            7999999888653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.03  E-value=1.5  Score=34.20  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCC---CCCCcceeE-EeCCEEEEEccCCCCCCCCCCCCc
Q 024009           66 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP---RGGPHRACV-VVDDRLLVIGGQEGDFMAKPGSPI  141 (274)
Q Consensus        66 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p---~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~  141 (274)
                      +++++++|+.+     ..+..|+       ..++++..+..+.   .+.  .+++ .-++++++.|+.+.          
T Consensus        18 dg~~la~~~~~-----~~i~iw~-------~~~~~~~~~~~l~gH~~~V--~~l~fsp~~~~l~s~s~D~----------   73 (371)
T d1k8kc_          18 DRTQIAICPNN-----HEVHIYE-------KSGNKWVQVHELKEHNGQV--TGVDWAPDSNRIVTCGTDR----------   73 (371)
T ss_dssp             TSSEEEEECSS-----SEEEEEE-------EETTEEEEEEEEECCSSCE--EEEEEETTTTEEEEEETTS----------
T ss_pred             CCCEEEEEeCC-----CEEEEEE-------CCCCCEEEEEEecCCCCCE--EEEEECCCCCEEEEEECCC----------
Confidence            56677777643     3455665       3445555444322   121  1222 23566666666542          


Q ss_pred             cccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009          142 FKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW  220 (274)
Q Consensus       142 ~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W  220 (274)
                                  .+..+| .+..|.....+........+....-+++.+++|+..+..          .++.++..+..+
T Consensus        74 ------------~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i----------~i~~~~~~~~~~  131 (371)
T d1k8kc_          74 ------------NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI----------SICYFEQENDWW  131 (371)
T ss_dssp             ------------CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSE----------EEEEEETTTTEE
T ss_pred             ------------eEEEEeecccccccccccccccccccccccccccccceeecccCcc----------eeeeeecccccc
Confidence                        244454 667776555443332222121122356666666543311          455556555555


Q ss_pred             EE
Q 024009          221 HV  222 (274)
Q Consensus       221 ~~  222 (274)
                      ..
T Consensus       132 ~~  133 (371)
T d1k8kc_         132 VC  133 (371)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.37  E-value=2.7  Score=31.14  Aligned_cols=42  Identities=10%  Similarity=0.125  Sum_probs=19.7

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCC
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSG   76 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~   76 (274)
                      ..+.+||..+.+...+........-.+++.. +++.++.|+.+
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567788777665443222111111222222 45566666543

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=2.6  Score=30.26  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=30.5

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceE-----Ee----ccCCCccceeeeEEE--cCEEEEEcc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH-----VI----GKLPYRVKTTLAGYW--NGWLYFTSG  247 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~-----~~----~~~p~~~~~~~~~~~--~~~l~~~GG  247 (274)
                      .++++|++-|.              ..|+||..+++-.     .|    ..+|...  .++...  ++++|+|-|
T Consensus       116 ~~g~~YfFkg~--------------~y~ryd~~~~~vd~~yPk~I~~~w~gvp~~i--dAAf~~~~~g~~Yff~g  174 (200)
T d1gena_         116 KNKKTYIFAGD--------------KFWRYNEVKKKMDPGFPKLIADAWNAIPDNL--DAVVDLQGGGHSYFFKG  174 (200)
T ss_dssp             TTTEEEEEETT--------------EEEEEETTTTEECSSCCEEHHHHSSSCCSSC--SEEEECTTTCEEEEEET
T ss_pred             CCCeEEEEeCc--------------EEEEeccccceeccCcceehhhccCCCCCCc--cEEEEecCCCEEEEEEC
Confidence            35899999764              7899998876521     22    2344322  334433  589999976

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=87.81  E-value=4.6  Score=30.83  Aligned_cols=183  Identities=14%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe-eeecCCCCCCceeeccCCCCCCC-cceeEEeCCEEEEEc
Q 024009           50 LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL-AVKDGKPLEKEWRTEIPIPRGGP-HRACVVVDDRLLVIG  127 (274)
Q Consensus        50 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~-~~~~~d~~~~~W~~~~~~p~~~~-~~~~~~~~~~iyv~G  127 (274)
                      ++..|.-..-|+.+++++.-+.+|=....-...++-.+.+ +.|. +|..-.-+.++..-.+.. ...+-.+++.||+.-
T Consensus       273 l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~-sp~~fvrr~i~~~y~~nasepcvk~y~gvlyl~t  351 (516)
T d1v0ea1         273 LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFN-SPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLIT  351 (516)
T ss_dssp             CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTT-CTTCCEEEECCGGGCTTEEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccC-CccceeeeccchhhcCCCCCchhhhcCCEEEEEe
Confidence            3555666667888888777777763322222222322222 1111 122222233332212221 123446799999984


Q ss_pred             -cCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCC-----CC
Q 024009          128 -GQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKH-----PT  200 (274)
Q Consensus       128 -G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-----~~  200 (274)
                       |.-...   +              -..+..-. ....|..+.- |....+...-.+..++.|+++|-.....     .+
T Consensus       352 rgt~~t~---~--------------gssl~~s~d~gq~w~~lrf-p~nvhhsnlpfakvgd~l~ifgsera~~ewe~gap  413 (516)
T d1v0ea1         352 RGTRGDR---L--------------GSSLHRSRDIGQTWESLRF-PHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAP  413 (516)
T ss_dssp             EESCTTS---C--------------CCEEEEESSTTSSCEEEEC-TTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCC
T ss_pred             ccccCCC---C--------------CccceeccccccChhhccC-CccccccCCChhhcCCeEEEecccccccccccCCC
Confidence             322110   0              11222222 4556877652 2222222345688999999999643311     11


Q ss_pred             ccc---ccccCceEEEE-----cCCCceEEe-ccC------CCccceeeeEEEcCEEE-EEccccCC
Q 024009          201 TKK---MVLVGEIFQFN-----LNTLKWHVI-GKL------PYRVKTTLAGYWNGWLY-FTSGQRDK  251 (274)
Q Consensus       201 ~~~---~~~~~~i~~yd-----~~~~~W~~~-~~~------p~~~~~~~~~~~~~~l~-~~GG~~~~  251 (274)
                      .+|   .+.-.-+.+.+     +..-+|..+ .++      .....-.++++.++.|| ||||++.-
T Consensus       414 d~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged~f  480 (516)
T d1v0ea1         414 DDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF  480 (516)
T ss_dssp             CCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECCSC
T ss_pred             ccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcccC
Confidence            111   11122233333     445568766 222      23334466677788887 88998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.77  E-value=4.4  Score=30.61  Aligned_cols=47  Identities=9%  Similarity=0.095  Sum_probs=23.8

Q ss_pred             CeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceE
Q 024009           35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS   88 (274)
Q Consensus        35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~   88 (274)
                      +.+.++|..+.+-..+-  ..-...-.++.+  ++++++.|+.+     ..+..|+
T Consensus        38 ~~v~i~~~~~~~~~~~~--~~H~~~v~~~~~sp~g~~latg~~d-----g~i~iwd   86 (311)
T d1nr0a1          38 TSVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVH-----GNVRIWD   86 (311)
T ss_dssp             TEEEEEETTCSSCCEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred             CEEEEEECCCCceeEEE--cCCCCCEEEEEEeCCCCeEeccccC-----ceEeeee
Confidence            45778887765322211  111122223333  67777888765     3456665

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=2.8  Score=30.06  Aligned_cols=15  Identities=13%  Similarity=0.140  Sum_probs=12.2

Q ss_pred             eeeEEeCCEEEEEcC
Q 024009           10 LGMVTDGRYIYVVTG   24 (274)
Q Consensus        10 ~~~~~~~~~iyv~GG   24 (274)
                      -+++.+++.+|+|-|
T Consensus        16 DAv~~~~G~~y~Fkg   30 (200)
T d1gena_          16 DGIAQIRGEIFFFKD   30 (200)
T ss_dssp             SEEEEETTEEEEEET
T ss_pred             eEEEecCCeEEEEeC
Confidence            367778999999966

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=85.95  E-value=2.4  Score=31.26  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCC
Q 024009           18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGS   75 (274)
Q Consensus        18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~   75 (274)
                      .+||.+..        -..+.++|+++++....-++  ...-+.+++- ++ .||+.+..
T Consensus         3 ~~yV~~~~--------~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~   52 (301)
T d1l0qa2           3 FAYIANSE--------SDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAH   52 (301)
T ss_dssp             EEEEEETT--------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGG
T ss_pred             EEEEEECC--------CCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECC
Confidence            57777542        24688999999876543222  2222344444 44 57777643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.92  E-value=2.1  Score=31.80  Aligned_cols=53  Identities=19%  Similarity=0.169  Sum_probs=29.0

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe-ccCCCccc-eeeeEEEcCEEEEEccc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI-GKLPYRVK-TTLAGYWNGWLYFTSGQ  248 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~-~~~p~~~~-~~~~~~~~~~l~~~GG~  248 (274)
                      .++++++.|+..+            .+..||+.+.+...+ ........ -..++..++..++.||.
T Consensus       234 ~~~~~l~sgs~dg------------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         234 PDNVRLATGSLDN------------SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             TTSSEEEEEETTS------------CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             ccccceEEEcCCC------------EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence            3667777776532            689999887665432 11111111 22333446666666664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=6.9  Score=29.53  Aligned_cols=13  Identities=8%  Similarity=0.003  Sum_probs=9.0

Q ss_pred             ceEEEEcCCCceE
Q 024009          209 EIFQFNLNTLKWH  221 (274)
Q Consensus       209 ~i~~yd~~~~~W~  221 (274)
                      .+..||+.+.+-.
T Consensus       247 ~i~i~d~~~~~~~  259 (337)
T d1gxra_         247 NVEVLHVNKPDKY  259 (337)
T ss_dssp             CEEEEETTSSCEE
T ss_pred             ccccccccccccc
Confidence            6788887766543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=82.79  E-value=3.2  Score=31.14  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=33.2

Q ss_pred             eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCC
Q 024009           15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGS   75 (274)
Q Consensus        15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~   75 (274)
                      -+++.++.++.        -+.+.++|.++++-...-++|....-..+++. ++ .+||.+..
T Consensus         6 ~~~~~l~~~~~--------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~   60 (346)
T d1jmxb_           6 AGHEYMIVTNY--------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH   60 (346)
T ss_dssp             TTCEEEEEEET--------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             CCCcEEEEEcC--------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECC
Confidence            35667777653        25789999999875544345544444555554 44 57777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.78  E-value=8.7  Score=28.31  Aligned_cols=50  Identities=12%  Similarity=0.064  Sum_probs=26.0

Q ss_pred             CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccce-eeeEEE-cCEEEEEccc
Q 024009          185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKT-TLAGYW-NGWLYFTSGQ  248 (274)
Q Consensus       185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~-~~~~~~-~~~l~~~GG~  248 (274)
                      ++++++.|+..+            .|..||+.+.+-  +..++..... .++... ++.+++.||.
T Consensus       281 ~~~~l~~g~~dg------------~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         281 SGRLLLAGYDDF------------NCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             SSCEEEEEETTS------------CEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCCEEEEEECCC------------EEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            566777766432            688999876543  3333321111 122222 4566666664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.05  E-value=9.3  Score=28.20  Aligned_cols=52  Identities=17%  Similarity=0.096  Sum_probs=30.4

Q ss_pred             eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEE-EcCEEEEEcc
Q 024009          184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY-WNGWLYFTSG  247 (274)
Q Consensus       184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~-~~~~l~~~GG  247 (274)
                      .++.+|+....            ...|+.||++.+....++.........++++ -++.||+.-.
T Consensus       166 ~~g~i~v~d~~------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         166 DKQEIFISDNR------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             SSSEEEEEEGG------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             cceeEEeeecc------------ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence            45789888654            3379999988776666643221112233333 2567887643