Citrus Sinensis ID: 024021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHHccccccccEEEEccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHccccEEEEEEEEccccccccccccEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHccccccccEcccccEcccccccEcccccccccccHcccccccccccHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHcccccccEEEcccccHHHHHHHHccccEEEEEEccHHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEEHHEEHHccHHHHHHHHHHHHHHcccccEEEEEEcccHHccccccccccHHHHHHHHcccccEEEEEccccccccHHHHHHcHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mrtvsrgmISNAlrfsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprVNKLQQLMHIEssggwekcweegltpwdigqpapiIVHLhqsgalpkgralvpgcgtgydvvamasperYVVGLEISDIAIKKAEElssslpnakfvsflkadfftwcptelFDLIFDYTFFCAIEPEMRAAWAQKIKDFLkpdgelitlmfpisdhvggppykvsvsDYEEVLqpmgfqaisivdnklaigprkgreklgrWKRSVRHSLL
Flexible Loop (DISEMBL)
mrtvsrgmISNALRFsfsipnilqlpissvrtrsfgiratkpkmgknreevendnvikshprvNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFqaisivdnklaigprkgreklgrwkrsvrhsll
Low Complexity Region (SEG)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Disordered region (IsUnstruct)
********ISNALRFSFSIPNILQLPISSVRTRSFG*****************************LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG********************
Disordered Region (DISOPRED)
********ISNALRFSFSIPNILQLPISSVRTR*****************************************SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRH***
Disordered Region (DISEMBL)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL************
Disordered Region (DISPRO)
*****R**ISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKN*******NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTVSRGMISNALRFSFSIPNILQLPISSVRTRSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q6AWU6	226	Probable thiol methyltran	yes	no	0.762	0.924	0.671	4e-82
Q93V78	226	Thiocyanate methyltransfe	N/A	no	0.700	0.849	0.677	8e-77
Q93XC4	226	Probable thiocyanate meth	N/A	no	0.817	0.991	0.593	9e-76
O80562	227	Probable thiol methyltran	no	no	0.718	0.867	0.629	2e-73
Q0WP12	246	Thiocyanate methyltransfe	no	no	0.770	0.857	0.606	9e-72
A7MVH9	216	Thiopurine S-methyltransf	yes	no	0.686	0.870	0.269	7e-12
Q87Q54	216	Thiopurine S-methyltransf	yes	no	0.686	0.870	0.245	4e-11
C3LLS2	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.286	8e-11
Q9KSN0	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.286	8e-11
A5F1V4	218	Thiopurine S-methyltransf	yes	no	0.543	0.683	0.280	2e-10

>sp|Q6AWU6|HOL3_ARATH Probable thiol methyltransferase 2 OS=Arabidopsis thaliana GN=HOL3 PE=1 SV=1

 Score =  304 bits (779), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 66  LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA 125
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVA
Sbjct: 17  FHRLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVA 76

Query: 126 MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
           MASP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFC
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFC 136

Query: 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245
           A EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AIS
Sbjct: 137 AFEPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAIS 196

Query: 246 IVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           IVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 IVDNELAVGPRKGMEKLGRWKKSSTFHSTL 226

S-adenosyl-L-methionine-dependent methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 9

>sp|Q93V78|TMT1_BRAOL Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1

 Score =  286 bits (733), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD G+  P++VHL  S +LP GRALVPGCG G+DVVAMASPER+VVG
Sbjct: 33  GGWEKCWEDGITPWDQGRATPLVVHLVDSSSLPLGRALVPGCGGGHDVVAMASPERFVVG 92

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+IS+ A++KA E   S P AK+ +F+K DFFTW P ELFDLIFDY  FCAIEPEMR AW
Sbjct: 93  LDISESALEKAAETYGSSPKAKYFTFVKEDFFTWRPNELFDLIFDYVVFCAIEPEMRPAW 152

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A+ + + LKPDGELITLM+PI+DH GGPPYKV+VS YE+VL P+GF+A+SI +N  +I  
Sbjct: 153 AKSMYELLKPDGELITLMYPITDHDGGPPYKVAVSTYEDVLVPVGFKAVSIEENPYSIAT 212

Query: 256 RKGREKLGRWKR 267
           RKG+EKLGRWK+
Sbjct: 213 RKGKEKLGRWKK 224

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage. Also accepts halid ions as substrates with a lower affinity.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|Q93XC4|TMT2_BRAOL Probable thiocyanate methyltransferase 2 OS=Brassica oleracea GN=TMT2 PE=2 SV=1

 Score =  283 bits (724), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 133/224 (59%), Positives = 167/224 (74%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
           M + ++   N N     P  +  + L      GGWEKCWE+G+TPWD G+  P++VHL +
Sbjct: 1   MAEVQQNSGNSNGENIIPPEDVAKFLPKTVDEGGWEKCWEDGVTPWDQGRATPLVVHLVE 60

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
           S +LP GR LVPGCG G+DVVAMASPERYVVGL+IS+ A++KA E   S P AK+ +F+K
Sbjct: 61  SSSLPLGRGLVPGCGGGHDVVAMASPERYVVGLDISESALEKAAETYGSSPKAKYFTFVK 120

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
            DFFTW P ELFDLIFDY  FCAIEPE R AWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct: 121 EDFFTWRPNELFDLIFDYVVFCAIEPETRPAWAKAMYELLKPDGELITLMYPITDHDGGP 180

Query: 224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
           PYKV+VS YE+VL P+GF+A+SI +N  +I  RKG+EKL RWK+
Sbjct: 181 PYKVAVSTYEDVLVPVGFKAVSIEENPYSIATRKGKEKLARWKK 224

S-adenosyl-L-methionine-dependent methyltransferase. Probably involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage (By similarity). Also accepts halid ions as substrates.

Brassica oleracea (taxid: 3712)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|O80562|HOL2_ARATH Probable thiol methyltransferase 1 OS=Arabidopsis thaliana GN=HOL2 PE=1 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 156/197 (79%)

Query: 71  HIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE 130
            + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPE
Sbjct: 29  QVVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPE 88

Query: 131 RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE 190
           R+VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPE
Sbjct: 89  RFVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPE 148

Query: 191 MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250
           MR AW + + + LKPDGELITLM+P++DH GG PYKV++S YE+VL P+GF+A+S+ +N 
Sbjct: 149 MRPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALSSYEDVLVPVGFKAVSVEENP 208

Query: 251 LAIGPRKGREKLGRWKR 267
            +I  RKG+EKL RWK+
Sbjct: 209 DSIPTRKGKEKLARWKK 225

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q0WP12|HOL1_ARATH Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1

 Score =  270 bits (690), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 162/216 (75%), Gaps = 5/216 (2%)

Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182

Query: 225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
           YKV VS +EEVL P+GF+A+S+ +N  AI P + RE
Sbjct: 183 YKVDVSTFEEVLVPIGFKAVSVEENPHAI-PTRQRE 217

S-adenosyl-L-methionine-dependent methyltransferase. Involved in glucosinolate metabolism and defense against phytopathogens. Highly reactive to thiocyanate (NCS(-)) derived from myrosinase-mediated hydrolysis of glucosinolates upon tissue damage.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 4

>sp|A7MVH9|TPMT_VIBHB Thiopurine S-methyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=tpm PE=3 SV=1

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQ-SGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++    Q +    +   LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWASNQIGFHLDDVNPLLPAFWQYTNPKREDTVLVPLCGKSEDLIWLATKHDEVQGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+I+D    
Sbjct: 67  ELSLIAVRAFFAEHFYTPTVTPVNGMHELYQFDELSIYTGDFFT-APVSKADIIYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
            A+  EMR  +A ++K  L P G   L+TL +P  D + GPP+ V V + E++ +  G++
Sbjct: 126 VALPKEMREEYANRVKQLLNPGGRILLVTLNYP-QDEMSGPPFSVPVEEIEQLFE--GYK 182

Query: 243 AISI-VDNKLAIGPRKGREKLGRWKRSV 269
              + VD      P+  ++ L R+   V
Sbjct: 183 VTCLNVDQADENHPKIAKKGLSRFSEEV 210

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q87Q54|TPMT_VIBPA Thiopurine S-methyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tpm PE=3 SV=1

 Score = 68.6 bits (166), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPII-VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P++  + H +    + + LVP CG   D+V +A+    V G+
Sbjct: 7   WHSKWASNQIGFHLEDVNPLLPAYWHHANPKREDKVLVPLCGKSEDLVWLATKHDSVEGV 66

Query: 137 EISDIAIKK--AEELSS----------SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +           L     +S    DFFT  P    D+++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTPISGMHELYQFDELSIYTGDFFT-APVSQADIVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
            A+  +MR  +  ++K  L P G   L+TL +P  + + GPP+ V + + +++    G++
Sbjct: 126 VALPQDMREEYVARLKQLLNPGGRILLVTLNYP-QEEMAGPPFSVPLEEIQQLF--AGYK 182

Query: 243 AISI-VDNKLAIGPRKGREKLGRWKRSV 269
              + VD      P+  ++ L R+   V
Sbjct: 183 VTCLNVDQADEHHPKIAKKGLSRFSEEV 210

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|C3LLS2|TPMT_VIBCM Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tpm PE=3 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|Q9KSN0|TPMT_VIBCH Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=tpm PE=3 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMRA +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

>sp|A5F1V4|TPMT_VIBC3 Thiopurine S-methyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tpm PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGL 136
           W   W      + +    P+++      A  +  + LVP CG   D++ +A+    V G+
Sbjct: 7   WHNKWAANQIGFHLEDVNPLLIRFWSDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQGV 66

Query: 137 EISDIAIKK--AEELSS---SLPNAKF-------VSFLKADFFTWCPTELFDLIFDYTFF 184
           E+S IA++   AE   +   +  NA+        ++    DFFT  P E  DL++D    
Sbjct: 67  ELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAAL 125

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGE-LITLMFPISDHVGGPPYKV 227
            A+  EMR  +AQ++   LKP G  L+  M  +   + GPP+ V
Sbjct: 126 VALPEEMRTEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
296084363	291	unnamed protein product [Vitis vinifera]	0.861	0.810	0.673	7e-95
359478233	225	PREDICTED: probable thiol methyltransfer	0.813	0.991	0.717	3e-94
224140695	192	predicted protein [Populus trichocarpa]	0.700	1.0	0.786	2e-88
449453195	259	PREDICTED: probable thiol methyltransfer	0.846	0.895	0.645	7e-85
255576426	198	Thiopurine S-methyltransferase, putative	0.678	0.939	0.758	3e-83
296084364	224	unnamed protein product [Vitis vinifera]	0.795	0.973	0.675	5e-83
359478304	274	PREDICTED: probable thiol methyltransfer	0.795	0.795	0.675	5e-83
30689545	226	putative thiol methyltransferase 2 [Arab	0.762	0.924	0.671	2e-80
297828113	227	hypothetical protein ARALYDRAFT_483510 [	0.762	0.920	0.677	1e-79
413953152	252	hypothetical protein ZEAMMB73_246013 [Ze	0.857	0.932	0.570	2e-78

>gi|296084363|emb|CBI24751.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 163/242 (67%), Positives = 198/242 (81%), Gaps = 6/242 (2%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           ++ G+  T+ +M  N   +E      S+P+V KL Q++  +S+GGWEK W++G TPWD+G
Sbjct: 56  KNLGVSTTQLRMSNNGSSIE------SNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLG 109

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P PII HLHQ+G LP G+ LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSS
Sbjct: 110 KPTPIIQHLHQTGTLPSGKTLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSS 169

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           L NA   +FLK DFFTW PTELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TL
Sbjct: 170 LWNANHFTFLKEDFFTWNPTELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTL 229

Query: 213 MFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHS 272
           MFPISDH GGPPYKVSV+DYEEVL PMGF+A+SIVDNK+AIGPRKGREKLGRWKR+   S
Sbjct: 230 MFPISDHAGGPPYKVSVADYEEVLHPMGFKAVSIVDNKMAIGPRKGREKLGRWKRTPSKS 289

Query: 273 LL 274
           LL
Sbjct: 290 LL 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478233|ref|XP_002275789.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 191/223 (85%)

Query: 52  ENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGR 111
            N + I+S+P+V KL Q++  +S+GGWEK W++G TPWD+G+P PII HLHQ+G LP G+
Sbjct: 3   NNGSSIESNPKVQKLNQIIGSDSAGGWEKSWQQGHTPWDLGKPTPIIQHLHQTGTLPSGK 62

Query: 112 ALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171
            LVPGCG GYDVV +A PER+VVGL+ISD AIKKA+ELSSSL NA   +FLK DFFTW P
Sbjct: 63  TLVPGCGCGYDVVTIACPERFVVGLDISDSAIKKAKELSSSLWNANHFTFLKEDFFTWNP 122

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSD 231
           TELFDLIFDYTFFCAIEP+MR+ WA++++  LKPDGEL+TLMFPISDH GGPPYKVSV+D
Sbjct: 123 TELFDLIFDYTFFCAIEPDMRSVWAKRMRHLLKPDGELLTLMFPISDHAGGPPYKVSVAD 182

Query: 232 YEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSLL 274
           YEEVL PMGF+A+SIVDNK+AIGPRKGREKLGRWKR+   SLL
Sbjct: 183 YEEVLHPMGFKAVSIVDNKMAIGPRKGREKLGRWKRTPSKSLL 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140695|ref|XP_002323714.1| predicted protein [Populus trichocarpa] gi|222866716|gb|EEF03847.1| predicted protein [Populus trichocarpa]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 173/192 (90%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWE CWE+GLTPWD+G+P PII+HLHQ+GALPKGRALVPGCG+GYDVVAMA  ERYVVG
Sbjct: 1   GGWENCWEQGLTPWDLGRPTPIILHLHQTGALPKGRALVPGCGSGYDVVAMACSERYVVG 60

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L++S  AI+KA ELSSSLPN+ + +FLKADFFTW P ELFDLIFDYTFFCAIEP MR+ W
Sbjct: 61  LDVSHTAIEKAIELSSSLPNSSYFTFLKADFFTWHPPELFDLIFDYTFFCAIEPGMRSRW 120

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A K+++ LKPDGELITLM+PISDHVGGPPYKVSVSDYEEVL PMGF+A++IVDN+LAI  
Sbjct: 121 ACKVQEMLKPDGELITLMYPISDHVGGPPYKVSVSDYEEVLHPMGFKAVTIVDNELAIEA 180

Query: 256 RKGREKLGRWKR 267
           RKGREK GRW+R
Sbjct: 181 RKGREKFGRWRR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453195|ref|XP_004144344.1| PREDICTED: probable thiol methyltransferase 2-like [Cucumis sativus]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 151/234 (64%), Positives = 183/234 (78%), Gaps = 2/234 (0%)

Query: 38  RATKPKMGKNREEVE-NDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAP 96
           RA   K+  N+   + N +      RV++ Q++M  + SGGW+ CWE+GLTPWD+GQP P
Sbjct: 21  RALTLKLRMNQNSTQHNASKFNHQSRVHEFQKVMGTDHSGGWDICWEQGLTPWDLGQPTP 80

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +I HL  +GALP GR LVPGCG+GYDVV MA  ERYVVGL+ISD AI+KA ELSSS PN 
Sbjct: 81  LIGHLCATGALPNGRVLVPGCGSGYDVVQMACAERYVVGLDISDKAIQKAIELSSSSPNM 140

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +  +FLK DFF+W P ELFDLIFDYTFFCAIEP MR AW Q+I+  LKP+GELITLMFPI
Sbjct: 141 RHCTFLKEDFFSWRPKELFDLIFDYTFFCAIEPVMRQAWGQQIQRLLKPNGELITLMFPI 200

Query: 217 -SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV 269
             DH+GGPPYKVSVSDYE+VL P+GF+A+ I DN+LA+ PRKGRE +GRWKRS+
Sbjct: 201 DDDHIGGPPYKVSVSDYEDVLHPLGFKAVLINDNELAVPPRKGREMIGRWKRSL 254

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576426|ref|XP_002529105.1| Thiopurine S-methyltransferase, putative [Ricinus communis] gi|223531456|gb|EEF33289.1| Thiopurine S-methyltransferase, putative [Ricinus communis]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 141/186 (75%), Positives = 169/186 (90%)

Query: 76  GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVG 135
           GGWEKCWE+G+TPWD+GQP PI++HLH +G+LPKGRAL+PGCG+G+DV+A+A PERYVVG
Sbjct: 12  GGWEKCWEQGVTPWDLGQPTPILLHLHHTGSLPKGRALIPGCGSGHDVIAIACPERYVVG 71

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
           L+I++ A+KKAEELSSSLPNA + +FLKADFF+W PTELFDLIFDYTFFCAIEPEMR+ W
Sbjct: 72  LDIAEKAVKKAEELSSSLPNANYCTFLKADFFSWQPTELFDLIFDYTFFCAIEPEMRSQW 131

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255
           A +I+D LKPDGELITL+FPI DH+GGPPYKVSVSDYEEVL P+GF+A+SIVDN+LAI  
Sbjct: 132 AIRIQDLLKPDGELITLIFPIDDHLGGPPYKVSVSDYEEVLCPIGFKAVSIVDNELAIKV 191

Query: 256 RKGREK 261
           R G  K
Sbjct: 192 RLGLYK 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084364|emb|CBI24752.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/219 (67%), Positives = 181/219 (82%), Gaps = 1/219 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           +DYE+VL PM F+A+SIVDN++AIG RKGREKLGRWKR+
Sbjct: 181 ADYEKVLHPMRFKAVSIVDNEMAIGSRKGREKLGRWKRT 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478304|ref|XP_002275814.2| PREDICTED: probable thiol methyltransferase 2 [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 148/219 (67%), Positives = 181/219 (82%), Gaps = 1/219 (0%)

Query: 51  VENDNV-IKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPK 109
           + ND+  I+S+  + K+ Q++    +G WE+ W++GLTPWD+G+  PII HLHQ+GALP 
Sbjct: 1   MANDSTSIESNSELQKISQVIGSGFNGSWEEKWQQGLTPWDLGKATPIIEHLHQAGALPN 60

Query: 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           GR L+PGCG GYDVVA+A PER+VVGL+ISD AIKKA+E SSS  NA    FLKADFFTW
Sbjct: 61  GRTLIPGCGRGYDVVAIACPERFVVGLDISDSAIKKAKESSSSSWNASHFIFLKADFFTW 120

Query: 170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV 229
            PTELFDLI DYTFFCAIEP+MR AWA +++  LKPDGEL+TLMFPISDH GGPPYKVS+
Sbjct: 121 NPTELFDLIIDYTFFCAIEPDMRPAWASRMQQLLKPDGELLTLMFPISDHTGGPPYKVSI 180

Query: 230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           +DYE+VL PM F+A+SIVDN++AIG RKGREKLGRWKR+
Sbjct: 181 ADYEKVLHPMRFKAVSIVDNEMAIGSRKGREKLGRWKRT 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689545|ref|NP_850403.1| putative thiol methyltransferase 2 [Arabidopsis thaliana] gi|75323116|sp|Q6AWU6.1|HOL3_ARATH RecName: Full=Probable thiol methyltransferase 2; AltName: Full=Protein HARMLESS TO OZONE LAYER 3; Short=AtHOL3 gi|50897218|gb|AAT85748.1| At2g43940 [Arabidopsis thaliana] gi|52421315|gb|AAU45227.1| At2g43940 [Arabidopsis thaliana] gi|330255256|gb|AEC10350.1| putative thiol methyltransferase 2 [Arabidopsis thaliana]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 66  LQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA 125
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVA
Sbjct: 17  FHRLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVA 76

Query: 126 MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
           MASP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFC
Sbjct: 77  MASPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFC 136

Query: 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245
           A EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AIS
Sbjct: 137 AFEPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAIS 196

Query: 246 IVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           IVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 IVDNELAVGPRKGMEKLGRWKKSSTFHSTL 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828113|ref|XP_002881939.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp. lyrata] gi|297327778|gb|EFH58198.1| hypothetical protein ARALYDRAFT_483510 [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 172/211 (81%), Gaps = 2/211 (0%)

Query: 66  LQQLMHIESSGG-WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVV 124
             +LM   SSGG WEK WE G TPWD+G+P P+IV L ++G+LP GRALVPGCGTGYDVV
Sbjct: 17  FHRLMSENSSGGGWEKSWEAGATPWDLGKPTPVIVRLVETGSLPNGRALVPGCGTGYDVV 76

Query: 125 AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184
           AMASP+R+VVGL+IS  A++++ +  SSLPN+K+ SFL  DFFTW P E FDLIFDYTFF
Sbjct: 77  AMASPDRHVVGLDISKTAVERSTKKFSSLPNSKYFSFLSEDFFTWEPAEKFDLIFDYTFF 136

Query: 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244
           CA EP +R  WAQ+++  LKPDGELITLMFPI +  GGPPYKVSVS+YE+VL P+GF+AI
Sbjct: 137 CAFEPGVRPLWAQQMEKLLKPDGELITLMFPIDERSGGPPYKVSVSEYEKVLIPLGFEAI 196

Query: 245 SIVDNKLAIGPRKGREKLGRWKR-SVRHSLL 274
           SIVDN+LA+GPRKG EKLGRWK+ S  HS L
Sbjct: 197 SIVDNELAVGPRKGMEKLGRWKKSSTFHSTL 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413953152|gb|AFW85801.1| hypothetical protein ZEAMMB73_246013 [Zea mays]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/242 (57%), Positives = 181/242 (74%), Gaps = 7/242 (2%)

Query: 33  RSFGIRATKPKMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIG 92
           R+ G  A     G  R+  EN       P V +L++L   +++ GWEK WE G+TPWD+G
Sbjct: 18  RAMGSSAPVRAAGGTRDPGEN-------PAVGRLRELFTGDAADGWEKSWEFGVTPWDLG 70

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152
           +P P+I HL +SG LPKGRALVPGCG GYDVVA+ASPER+VVGL+ISD+A+KKA++ SSS
Sbjct: 71  KPTPVIEHLARSGTLPKGRALVPGCGMGYDVVALASPERFVVGLDISDMAVKKAKQWSSS 130

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
           LPNA + +FL  DFF W P+E FDLIFDYTFFCA++P +R AWA+ +   LKPDGEL+TL
Sbjct: 131 LPNADYFTFLAEDFFKWIPSEQFDLIFDYTFFCALDPSLRVAWAETVNRLLKPDGELLTL 190

Query: 213 MFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHS 272
           ++ ISD  GGPPY  +V+DY++VL+P+G +++ + DN+LAI PRKG EK+GRWKR    S
Sbjct: 191 IYLISDQEGGPPYNNTVADYQKVLEPLGLKSVLMEDNELAIKPRKGCEKIGRWKRCAHQS 250

Query: 273 LL 274
            L
Sbjct: 251 SL 252

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2051824	226	HOL3 "HARMLESS TO OZONE LAYER	0.755	0.915	0.677	4.3e-77
UNIPROTKB|Q93V78	226	TMT1 "Thiocyanate methyltransf	0.817	0.991	0.598	7.5e-73
TAIR|locus:2051784	227	HOL2 "HARMLESS TO OZONE LAYER	0.715	0.863	0.632	1.4e-69
TAIR|locus:2051728	246	HOL1 "HARMLESS TO OZONE LAYER	0.766	0.853	0.608	2.7e-68
ASPGD|ASPL0000006893	283	AN6094 [Emericella nidulans (t	0.266	0.257	0.393	6.7e-18
UNIPROTKB|Q9KSN0	218	tpm "Thiopurine S-methyltransf	0.540	0.678	0.290	1.2e-12
TIGR_CMR|VC_1226	218	VC_1226 "thiopurine methyltran	0.540	0.678	0.290	1.2e-12
UNIPROTKB|O06426	241	MT0586 "Uncharacterized protei	0.551	0.626	0.310	2.4e-07
TIGR_CMR|SO_0582	218	SO_0582 "thiopurine S-methyltr	0.635	0.798	0.261	1.1e-05
UNIPROTKB|O69667	233	Rv3699 "Conserved protein" [My	0.470	0.553	0.257	0.0003

TAIR|locus:2051824 HOL3 "HARMLESS TO OZONE LAYER 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 141/208 (67%), Positives = 171/208 (82%)

Query:    68 QLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +LM   SSGGWEK WE G TPWD+G+P P+I HL ++G+LP GRALVPGCGTGYDVVAMA
Sbjct:    19 RLMSENSSGGWEKSWEAGATPWDLGKPTPVIAHLVETGSLPNGRALVPGCGTGYDVVAMA 78

Query:   128 SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187
             SP+R+VVGL+IS  A++++ +  S+LPNAK+ SFL  DFFTW P E FDLIFDYTFFCA 
Sbjct:    79 SPDRHVVGLDISKTAVERSTKKFSTLPNAKYFSFLSEDFFTWEPAEKFDLIFDYTFFCAF 138

Query:   188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
             EP +R  WAQ+++  LKP GELITLMFPI +  GGPPY+VSVS+YE+VL P+GF+AISIV
Sbjct:   139 EPGVRPLWAQRMEKLLKPGGELITLMFPIDERSGGPPYEVSVSEYEKVLIPLGFEAISIV 198

Query:   248 DNKLAIGPRKGREKLGRWKRSVR-HSLL 274
             DN+LA+GPRKG EKLGRWK+S   HS L
Sbjct:   199 DNELAVGPRKGMEKLGRWKKSSTFHSTL 226

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

UNIPROTKB|Q93V78 TMT1 "Thiocyanate methyltransferase 1" [Brassica oleracea (taxid:3712)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 134/224 (59%), Positives = 169/224 (75%)

Query:    44 MGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             M + +++  + N     P     + L      GGWEKCWE+G+TPWD G+  P++VHL  
Sbjct:     1 MAEEQQKAGHSNGENIIPPEEVAKFLPETVEEGGWEKCWEDGITPWDQGRATPLVVHLVD 60

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             S +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A++KA E   S P AK+ +F+K
Sbjct:    61 SSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALEKAAETYGSSPKAKYFTFVK 120

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              DFFTW P ELFDLIFDY  FCAIEPEMR AWA+ + + LKPDGELITLM+PI+DH GGP
Sbjct:   121 EDFFTWRPNELFDLIFDYVVFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHDGGP 180

Query:   224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
             PYKV+VS YE+VL P+GF+A+SI +N  +I  RKG+EKLGRWK+
Sbjct:   181 PYKVAVSTYEDVLVPVGFKAVSIEENPYSIATRKGKEKLGRWKK 224

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

TAIR|locus:2051784 HOL2 "HARMLESS TO OZONE LAYER 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 124/196 (63%), Positives = 156/196 (79%)

Query:    72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER 131
             + + GGW+KCWE+G+TPWD G+  P+I+HL  S ALP GR LVPGCG G+DVVAMASPER
Sbjct:    30 VVAEGGWDKCWEDGVTPWDQGRATPLILHLLDSSALPLGRTLVPGCGGGHDVVAMASPER 89

Query:   132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEM 191
             +VVGL+ISD A+ KA E   S P A++ SF+K D FTW P ELFDLIFDY FFCAIEPEM
Sbjct:    90 FVVGLDISDKALNKANETYGSSPKAEYFSFVKEDVFTWRPNELFDLIFDYVFFCAIEPEM 149

Query:   192 RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251
             R AW + + + LKPDGELITLM+P++DH GG PYKV++S YE+VL P+GF+A+S+ +N  
Sbjct:   150 RPAWGKSMHELLKPDGELITLMYPMTDHEGGAPYKVALSSYEDVLVPVGFKAVSVEENPD 209

Query:   252 AIGPRKGREKLGRWKR 267
             +I  RKG+EKL RWK+
Sbjct:   210 SIPTRKGKEKLARWKK 225

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

TAIR|locus:2051728 HOL1 "HARMLESS TO OZONE LAYER 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 132/217 (60%), Positives = 164/217 (75%)

Query:    46 KNREEVENDNVIKSHPRVNKLQQLMH--IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ 103
             +N ++    NVI   P   ++   +H  +E  GGWEKCWEE +TPWD G+  P+IVHL  
Sbjct:     6 QNSDQSNGGNVI---PTPEEVATFLHKTVEE-GGWEKCWEEEITPWDQGRATPLIVHLVD 61

Query:   104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
             + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K
Sbjct:    62 TSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVK 121

Query:   164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGP
Sbjct:   122 EDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP 181

Query:   224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
             PYKV VS +EEVL P+GF+A+S+ +N  AI P + RE
Sbjct:   182 PYKVDVSTFEEVLVPIGFKAVSVEENPHAI-PTRQRE 217

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0018708 "thiol S-methyltransferase activity" evidence=IDA

GO:0019762 "glucosinolate catabolic process" evidence=IDA

ASPGD|ASPL0000006893 AN6094 [Emericella nidulans (taxid:162425)]

 Score = 148 (57.2 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query:   161 FLKADFFT--WCPTEL------------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
             FL+ DFFT  W   E             FDL++DYTF CA+ P  R  WA+++ D L+P 
Sbjct:   156 FLQGDFFTDTWIENESTGLDQGRTENGKFDLVYDYTFLCALHPAQRTRWAERMADLLRPG 215

Query:   207 GELITLMFPI-SDH-VGGPPYKVSVSDYE 233
             G L+ L FP+  D  + GPP+ V+   +E
Sbjct:   216 GLLVCLEFPMYKDPALPGPPWGVNGIHWE 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0008119 "thiopurine S-methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|Q9KSN0 tpm "Thiopurine S-methyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKV 227
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

TIGR_CMR|VC_1226 VC_1226 "thiopurine methyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 48/165 (29%), Positives = 78/165 (47%)

Query:    78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKG--RALVPGCGTGYDVVAMASPERYVVG 135
             W   W      + +    P+++    S   PK   + LVP CG   D++ +A+    V G
Sbjct:     7 WHNKWAANQIGFHLEDVNPLLIRFW-SDLAPKRSEKVLVPLCGKSEDLIWLANQHDSVQG 65

Query:   136 LEISDIAIKK--AEELSSSLP---NAKF-------VSFLKADFFTWCPTELFDLIFDYTF 183
             +E+S IA++   AE   +      NA+        ++    DFFT  P E  DL++D   
Sbjct:    66 VELSQIAVRSFFAEHFYTPTVTRLNAQHELYQFDELTLFTGDFFT-APVESVDLVYDRAA 124

Query:   184 FCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDHVGGPPYKV 227
               A+  EMRA +AQ++   LKP G ++ + M  +   + GPP+ V
Sbjct:   125 LVALPEEMRAEYAQRVLQLLKPGGRILLVSMDYVQTELSGPPFSV 169

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O06426 MT0586 "Uncharacterized protein Rv0560c/MT0586" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 138 (53.6 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 49/158 (31%), Positives = 67/158 (42%)

Query:    70 MHIESS-GGWEKCWEEGLTP-WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA 127
             +  ES+  G    + EG+ P W IG+P P +  L   G   +G  L  GCG     +A+A
Sbjct:    23 LEFESAYRGESVAFGEGVRPPWSIGEPQPELAALIVQGKF-RGDVLDVGCGEAAISLALA 81

Query:   128 SPERYVVGLEISDIAIKKA--EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185
                   VGL++S  A++ A  E     L NA F     A  FT      FD I D T F 
Sbjct:    82 ERGHTTVGLDLSPAAVELARHEAAKRGLANASF-EVADASSFTGYDGR-FDTIVDSTLFH 139

Query:   186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
             ++  E R  + Q I     P      L+F  +    GP
Sbjct:   140 SMPVESREGYLQSIVRAAAPGASYFVLVFDRAAIPEGP 177

GO:0001666 "response to hypoxia" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010106 "cellular response to iron ion starvation" evidence=IEP

TIGR_CMR|SO_0582 SO_0582 "thiopurine S-methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 53/203 (26%), Positives = 93/203 (45%)

Query:    76 GGWEKCWEE---GLTPWDIGQPAPIIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPER 131
             G W + W++   G    D+  P  ++ + HQ  ALP   +  VP CG   D+  +A    
Sbjct:     4 GFWHEKWQQQQIGFHQQDVN-PF-LVTYWHQL-ALPADAKIFVPLCGKSLDMCFLAEQGH 60

Query:   132 YVVGLEISDIAIKKAEELSSSLP------------NAKFVSFLKADFFTWCPTELFDL-- 177
              V+G E++++A+++     + LP              + +S  + D FT   +   ++  
Sbjct:    61 QVIGCELNELAVQQFFS-DNQLPMQQSAEGEHQHYQTEQISLYQGDIFTLPQSITAEVSG 119

Query:   178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE---LITLMFPISDHVGGPPYKVSVSDYEE 234
              +D     A    MRA +A+++  +L P G    L+TL +P  + + GPP+ VS +  E 
Sbjct:   120 FYDRAALIAWPESMRAQYAKQLA-YLLPQGSVGLLVTLDYP-QEVLSGPPFAVSPTWVET 177

Query:   235 VL-QPMGFQAISIVDNKLAIGPR 256
              L +    Q ++  D  LA  PR
Sbjct:   178 HLSEDFEIQPLACQD-VLADNPR 199

GO:0008119 "thiopurine S-methyltransferase activity" evidence=ISS

GO:0010038 "response to metal ion" evidence=ISS

UNIPROTKB|O69667 Rv3699 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 0.00030, P = 0.00030
 Identities = 35/136 (25%), Positives = 60/136 (44%)

Query:    84 EGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAI 143
             EG  PW+IG+P P +  L  +G + +   L  GCG     +A+A+    VVG++++  A+
Sbjct:    19 EGPPPWNIGEPQPELATLIAAGKV-RSDVLDAGCGYAELSLALAADGYTVVGIDLTPTAV 77

Query:   144 KKAEELSSSLPNAKFVSFLKADF--FTWCPTEL---FDLIFDYTFFCAIEPEMRAAWAQK 198
               A + +         SF++AD   F   P      F  + D T F ++  + R  +   
Sbjct:    78 AAATKAAEER-GLTTASFVQADITEFAAYPAGSAGRFSTVIDSTLFHSLPVDSRDRYLSS 136

Query:   199 IKDFLKPDGELITLMF 214
             +     P      L+F
Sbjct:   137 VHRAAAPGASYYVLVF 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       274   0.00078  115 3  11 22  0.48    33
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  210 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.72u 0.19s 23.91t   Elapsed:  00:00:01
  Total cpu time:  23.72u 0.19s 23.91t   Elapsed:  00:00:01
  Start:  Sat May 11 07:24:43 2013   End:  Sat May 11 07:24:44 2013

GO:0005618 "cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AWU6	HOL3_ARATH	2, ., 1, ., 1, ., 9	0.6714	0.7627	0.9247	yes	no
Q93XC4	TMT2_BRAOL	2, ., 1, ., 1, ., n, 4	0.5937	0.8175	0.9911	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.67	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	0.921
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam05724	203	pfam05724, TPMT, Thiopurine S-methyltransferase (T	1e-51
TIGR03840	213	TIGR03840, TMPT_Se_Te, thiopurine S-methyltransfer	1e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-11
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	6e-10
PRK13255	218	PRK13255, PRK13255, thiopurine S-methyltransferase	7e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	6e-08
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-05
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	5e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	6e-05
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	3e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	6e-04
COG4106	257	COG4106, Tam, Trans-aconitate methyltransferase [G	0.001
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.002
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	0.004

>gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT)

 Score =  167 bits (424), Expect = 1e-51
 Identities = 64/205 (31%), Positives = 96/205 (46%), Gaps = 26/205 (12%)

Query: 88  PWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA 146
           P+      P++V H       P  R LVP CG   D+V +A    +VVG+EIS++A++K 
Sbjct: 1   PFHQEGVNPLLVRHWDALNLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKF 60

Query: 147 EELSSSLPNAKFVSFLK-----------ADFFTWCPTEL--FDLIFDYTFFCAIEPEMRA 193
              +   P    +S  K            DFFT    +L  FDLI+D    CA+ PEMR 
Sbjct: 61  FAEAGLSPPITELSGFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCALPPEMRP 120

Query: 194 AWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ--------A 243
            +A+++ + L P G   LITL +P +DH  GPP+ V  ++ E +    G++        A
Sbjct: 121 RYAKQMYELLPPGGRGLLITLDYPQTDHE-GPPFSVPAAELEALFGG-GWKVARLEREDA 178

Query: 244 ISIVDNKLAIGPRKGREKLGRWKRS 268
           +       A G  +  EK+    R 
Sbjct: 179 LEPEPRFKAAGVSRLDEKVYVLTRK 203

This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203

>gnl|CDD|213871 TIGR03840, TMPT_Se_Te, thiopurine S-methyltransferase, Se/Te detoxification family

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W+EG   +   +  P++V H    G     R  VP CG   D+  +A     V+G+
Sbjct: 3   WHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGV 62

Query: 137 EISDIAIKK--AE-ELS---SSLPNAKF-----VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S+IA+++  AE  L+   +            +     DFF     +L   D ++D   
Sbjct: 63  ELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAA 122

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
             A+  EMR  +A  +   L P     LITL +     + GPP+  SVS   EV    G
Sbjct: 123 LIALPEEMRQRYAAHLLALLPPGARQLLITLDYD-QSEMAGPPF--SVSP-AEVEALYG 177

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Length = 213

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 57.8 bits (140), Expect = 6e-11
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW 169
           R L  GCGTG   +A+AS P   V G++IS +A++ A +  ++   A  V  LK D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKA-AAALLADNVEVLKGDAEEL 59

Query: 170 --CPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
                E FD+I  D         E  A + ++ +  LKP G L+ 
Sbjct: 60  PPEADESFDVIISDPPLHH--LVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)

Query: 116 GCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169
           GCGTGY    +A    P   VVG++IS+ AI+KA+E +  L   + V F++ D       
Sbjct: 11  GCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFIQGDIEELPQL 69

Query: 170 -CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                 FD++        + P+      ++I   LKP G LI  
Sbjct: 70  QLEDNSFDVVISNEVLNHL-PDPDKVL-EEIIRVLKPGGVLIVS 111

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|183921 PRK13255, PRK13255, thiopurine S-methyltransferase; Reviewed

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 20/179 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGL 136
           W + W E    +   +  P++  +          R LVP CG   D++ +A     V+G+
Sbjct: 6   WHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGV 65

Query: 137 EISDIAIKK--AE-ELSSSLP-NAKF-------VSFLKADFFTWCPTEL--FDLIFDYTF 183
           E+S++A+++  AE  L+     + +F       ++    DFF     +L   D ++D   
Sbjct: 66  ELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAA 125

Query: 184 FCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
             A+  EMR  + Q++   L       L+TL +P  + + GPP+  SVSD EEV     
Sbjct: 126 LIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE-LAGPPF--SVSD-EEVEALYA 180

Length = 218

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 116 GCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCP 171
           GCGTG  +  +  A P     G++IS  A++ A E  ++L   +A  V     D      
Sbjct: 4   GCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID-LD 62

Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
              FD++        +      A  + ++  LKP G L
Sbjct: 63  PGSFDVVVASNVLHHLAD--PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 116 GCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE- 173
           GCGTG  + A+A +    V G++IS  A++ A+E          V F+ AD       E 
Sbjct: 5   GCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADARDLPFEEG 62

Query: 174 LFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
            FDL+         + P+   A  ++    L+P G
Sbjct: 63  SFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            R L PG G+G      A A P+  VVG+E+   A   A    +    A  V  +  D  
Sbjct: 2   DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAR 61

Query: 168 T--WCPTELFDLIF---DYTFFCAIEPEMRAAWAQ---KIKDFLKPDG 207
                P   FDL+     Y        + R  + +        LKP G
Sbjct: 62  ELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGG 109

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
           P  R L  GCGTG   + +A   P   V G+++S   ++ A E +      + ++F++ D
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-ITFVQGD 59

Query: 166 FFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                   E FD +F       +   + A         LKP G L+
Sbjct: 60  APDALDLLEGFDAVFIGGGGGDLLELLDALA-----SLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 17/100 (17%)

Query: 116 GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWC 170
           GCGTG    A+A      V G+++S   +  A +            F+  D     F   
Sbjct: 4   GCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF--- 53

Query: 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           P E FD++        + P+   A  ++I   LKP G+L+
Sbjct: 54  PDESFDVVVSSLVLHHL-PDPERAL-REIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADF 166
              R L  G G+G   +  A   + VVG++I+  A++ A+  +         V  +++D 
Sbjct: 23  KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL 82

Query: 167 FTWCPTELFDLI-FD--Y---TFFCAIEPEMRAAW-------------AQKIKDFLKPDG 207
           F     + FD+I F+  Y         +  +  A                ++  +LKP G
Sbjct: 83  FEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142

Query: 208 ELITLMFPISDHVGGPPYKVSVSDYEEVLQPM---GFQAISIVDNKL 251
            ++ L    S          S++  +EVL+ +   GF+A  + + K 
Sbjct: 143 RILLL---QS----------SLTGEDEVLEYLEKLGFEAEVVAEEKF 176

Length = 188

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 27/121 (22%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           G G+G   +A+A   P+  V  ++IS  A+  A + ++ L     V FL++D+F   P  
Sbjct: 95  GTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL-GLDNVEFLQSDWFEPLPGG 153

Query: 174 LFDLI------FDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGEL 209
            FDLI              ++PE+R                       +    LKP G L
Sbjct: 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWL 213

Query: 210 I 210
           +
Sbjct: 214 L 214

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.0 bits (93), Expect = 3e-04
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 5/160 (3%)

Query: 87  TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVA--MASPERYVVGLEISDIAIK 144
                     ++V             L  GCGTG   +   +     YVVG+++S   + 
Sbjct: 27  LLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLA 86

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF-CAIEPEMRAAWAQKIKDFL 203
            A   +        V F+ AD             FD       +     A   +++   L
Sbjct: 87  LARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVL 145

Query: 204 KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243
           KP G L+ L   + D +        +   + VL+      
Sbjct: 146 KPGGRLV-LSDLLRDGLLEGRLAALLGFGDPVLERGDILL 184

Length = 257

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 20/115 (17%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           ++        P GR L  GCGTG  +  +      V G++ S  A+       +  P   
Sbjct: 12  LLARLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDP--- 68

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                            +DLI   T F  +E  P+  A   Q++++ LKP G L+
Sbjct: 69  -----------AVLAGKYDLI---TAFEVLEHLPDPPALL-QQLRELLKPGGVLL 108

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173
           GCG G     +A   P+  + G++ S   + KA +    LP+A   +F +AD  TW P +
Sbjct: 38  GCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR---LPDA---TFEEADLRTWKPEQ 91

Query: 174 LFDLIF 179
             DL+F
Sbjct: 92  PTDLLF 97

Length = 257

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 35/132 (26%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSF 161
              KGR L  G G G   + +     + +  +VG+EI + A + A+   +  P  + +  
Sbjct: 42  VPKKGRILDLGAGNG--ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQV 99

Query: 162 LKADFFTWCPT---ELFDLI------FD---------------YTFFCAIEPEMRAAWAQ 197
           ++AD   +        FDLI      F                +     +E        +
Sbjct: 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLE-----DLIR 154

Query: 198 KIKDFLKPDGEL 209
                LKP G L
Sbjct: 155 AAAKLLKPGGRL 166

Length = 248

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               G+ L  GCG G    A+A  SP+  V  ++I+  A++ A   + +    +      
Sbjct: 29  KPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARA-NLAANGLENGEVFW 87

Query: 164 ADFFTWCPTELFDLIFDYT---FFCAIEPEMRAAWA--QKIKDFLKPDGEL 209
           +D ++      FDLI   +   F      +   A          LKP GEL
Sbjct: 88  SDLYSAVEPGKFDLII--SNPPFHAGKATDYDVAQRFIAGAARHLKPGGEL 136

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.91
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.9
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.9
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.89
PRK11207	197	tellurite resistance protein TehB; Provisional	99.87
PLN02244	340	tocopherol O-methyltransferase	99.86
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.85
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.84
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.83
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.83
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.83
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.83
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.82
KOG2361	264	consensus Predicted methyltransferase [General fun	99.82
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.82
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.81
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.81
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.8
PRK12335	287	tellurite resistance protein TehB; Provisional	99.79
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.78
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.78
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.78
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.77
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.77
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.75
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.75
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.75
PLN02336	475	phosphoethanolamine N-methyltransferase	99.74
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.74
KOG1271	227	consensus Methyltransferases [General function pre	99.73
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.73
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.72
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.72
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.72
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.72
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.71
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.71
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.71
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.71
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.7
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.7
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.7
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.69
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.66
PRK14968	188	putative methyltransferase; Provisional	99.65
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.65
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.65
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.64
COG4123	248	Predicted O-methyltransferase [General function pr	99.64
PLN02336	475	phosphoethanolamine N-methyltransferase	99.64
PRK14967	223	putative methyltransferase; Provisional	99.63
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.63
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.63
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.63
PRK08317	241	hypothetical protein; Provisional	99.63
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.62
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.62
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.62
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.62
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.61
PLN03075	296	nicotianamine synthase; Provisional	99.61
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.6
PRK06202	232	hypothetical protein; Provisional	99.6
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.6
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.59
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.58
PRK04266	226	fibrillarin; Provisional	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.57
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.57
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.57
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.56
PRK05785	226	hypothetical protein; Provisional	99.55
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.55
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.55
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.55
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.55
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.54
TIGR03438	301	probable methyltransferase. This model represents	99.54
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.54
PRK06922	677	hypothetical protein; Provisional	99.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.53
PHA03411	279	putative methyltransferase; Provisional	99.53
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.53
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.51
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.5
COG2890	280	HemK Methylase of polypeptide chain release factor	99.5
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.5
PTZ00146	293	fibrillarin; Provisional	99.5
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.49
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.47
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.47
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.47
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.47
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.47
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.46
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.46
KOG4300	252	consensus Predicted methyltransferase [General fun	99.45
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.45
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.43
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.4
PRK07402	196	precorrin-6B methylase; Provisional	99.39
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.38
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.38
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.37
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.37
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.36
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.34
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.34
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.33
PHA03412	241	putative methyltransferase; Provisional	99.33
PLN02672	1082	methionine S-methyltransferase	99.33
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.32
PRK04457	262	spermidine synthase; Provisional	99.32
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.32
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.31
PLN02476	278	O-methyltransferase	99.31
COG4122	219	Predicted O-methyltransferase [General function pr	99.3
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.28
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.28
PRK00811	283	spermidine synthase; Provisional	99.27
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.26
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.26
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.26
TIGR00438	188	rrmJ cell division protein FtsJ.	99.25
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.24
PRK01581	374	speE spermidine synthase; Validated	99.24
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.23
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.23
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.22
PRK03612	521	spermidine synthase; Provisional	99.22
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.21
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.21
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.21
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.2
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.19
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.19
COG2521	287	Predicted archaeal methyltransferase [General func	99.19
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.17
KOG2899	288	consensus Predicted methyltransferase [General fun	99.16
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.16
KOG3010	261	consensus Methyltransferase [General function pred	99.15
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.14
PLN02366	308	spermidine synthase	99.14
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.13
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.13
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.13
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.13
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.12
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.12
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.12
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.12
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.11
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.09
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	99.09
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.08
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.07
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.07
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.07
KOG2904	328	consensus Predicted methyltransferase [General fun	99.01
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.01
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.01
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.0
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	99.0
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.99
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.98
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.94
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.94
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.94
KOG2940	325	consensus Predicted methyltransferase [General fun	98.91
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.9
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.9
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.89
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.89
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.88
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.86
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.84
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.84
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.84
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.84
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.83
PRK04148	134	hypothetical protein; Provisional	98.83
PLN02823	336	spermine synthase	98.83
COG2520	341	Predicted methyltransferase [General function pred	98.81
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.8
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.79
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.76
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.74
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.73
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.73
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.71
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.68
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.65
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.65
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.65
PRK00536	262	speE spermidine synthase; Provisional	98.62
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.59
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.59
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.58
KOG2730	263	consensus Methylase [General function prediction o	98.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.58
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.58
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.57
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.51
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.51
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.46
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.46
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.45
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.44
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.43
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.42
PF13679	141	Methyltransf_32: Methyltransferase domain	98.41
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.38
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.37
COG3897	218	Predicted methyltransferase [General function pred	98.35
COG4076	252	Predicted RNA methylase [General function predicti	98.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.31
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.31
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.31
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.29
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.27
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.27
KOG1331	293	consensus Predicted methyltransferase [General fun	98.26
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.25
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.25
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.21
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.19
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.15
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.14
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.12
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.1
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.09
COG4798	238	Predicted methyltransferase [General function pred	98.07
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.05
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.02
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.98
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.96
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.93
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.85
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.78
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.77
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.75
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.72
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.7
KOG3115	249	consensus Methyltransferase-like protein [General	97.67
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.67
PRK10742	250	putative methyltransferase; Provisional	97.65
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.64
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.47
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.41
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.41
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.4
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.3
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.3
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.25
PHA01634	156	hypothetical protein	97.22
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.21
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.2
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.19
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.11
PRK11524	284	putative methyltransferase; Provisional	97.08
COG0286	489	HsdM Type I restriction-modification system methyl	97.05
COG1565	370	Uncharacterized conserved protein [Function unknow	97.03
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.94
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.89
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.89
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.87
PRK13699	227	putative methylase; Provisional	96.83
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.75
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.71
COG1568	354	Predicted methyltransferases [General function pre	96.69
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.67
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.67
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.64
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.63
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.54
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.45
COG4301	321	Uncharacterized conserved protein [Function unknow	96.32
PRK13699	227	putative methylase; Provisional	96.21
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.21
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.14
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.01
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.0
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.92
KOG1227	351	consensus Putative methyltransferase [General func	95.88
PF03269	177	DUF268: Caenorhabditis protein of unknown function	95.81
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.61
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.59
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.53
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	95.43
PTZ00357	1072	methyltransferase; Provisional	95.29
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.2
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	95.12
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	94.84
KOG2920	282	consensus Predicted methyltransferase [General fun	94.81
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.8
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	94.79
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.79
COG2933	358	Predicted SAM-dependent methyltransferase [General	94.66
KOG2912	419	consensus Predicted DNA methylase [Function unknow	94.61
PRK10458	467	DNA cytosine methylase; Provisional	94.24
COG1255	129	Uncharacterized protein conserved in archaea [Func	94.05
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	94.04
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.0
PRK11524	284	putative methyltransferase; Provisional	94.0
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	93.99
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	93.9
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.87
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	93.53
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.39
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	93.19
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	93.18
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.87
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.49
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.4
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.35
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.31
PRK09496	453	trkA potassium transporter peripheral membrane com	91.63
TIGR00497	501	hsdM type I restriction system adenine methylase (	91.34
PRK10669	558	putative cation:proton antiport protein; Provision	91.14
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.07
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.63
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.56
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.46
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.92
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	89.82
COG0863	302	DNA modification methylase [DNA replication, recom	89.79
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.18
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	88.62
KOG3924	419	consensus Putative protein methyltransferase invol	88.53
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.52
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	88.36
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	87.42
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	87.3
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.07
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	86.97
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	86.91
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.87
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	86.48
PRK07417	279	arogenate dehydrogenase; Reviewed	86.31
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	86.09
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	85.64
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	85.54
PRK09496	453	trkA potassium transporter peripheral membrane com	85.47
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.14
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	85.12
PRK05872	296	short chain dehydrogenase; Provisional	84.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	84.67
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	84.65
PRK08213	259	gluconate 5-dehydrogenase; Provisional	84.26
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	84.13
PF11253	127	DUF3052: Protein of unknown function (DUF3052); In	83.79
PRK07109	334	short chain dehydrogenase; Provisional	83.79
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	83.72
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	83.61
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	83.39
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	83.28
PRK08324	681	short chain dehydrogenase; Validated	83.26
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	83.06
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	82.98
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.92
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	82.85
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.53
PRK12939	250	short chain dehydrogenase; Provisional	82.52
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.49
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	82.35
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	82.27
PRK05867	253	short chain dehydrogenase; Provisional	82.26
PRK06701	290	short chain dehydrogenase; Provisional	82.26
PRK05854	313	short chain dehydrogenase; Provisional	81.96
PF06016	1289	Reovirus_L2: Reovirus core-spike protein lambda-2	81.91
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	81.77
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	81.76
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	81.69
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	81.52
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	81.37
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.32
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	81.25
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	80.87
PRK10537	393	voltage-gated potassium channel; Provisional	80.74
PRK06139	330	short chain dehydrogenase; Provisional	80.56
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	80.44
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	80.31
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.12
PRK07806	248	short chain dehydrogenase; Provisional	80.08
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	80.05

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.91  E-value=1e-22  Score=165.18  Aligned_cols=175  Identities=22%  Similarity=0.412  Sum_probs=143.4

Q ss_pred             chhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--
Q 024021           77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--  153 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--  153 (274)
                      +|+++|..+..+|+...+.+.+.+++.... .++.+|||+|||.|..+.+|++.|..|+|+|+|+.+++.+.......  
T Consensus         2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~   81 (213)
T TIGR03840         2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT   81 (213)
T ss_pred             hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc
Confidence            799999999999998999999999887643 35679999999999999999999999999999999999864422110  


Q ss_pred             ---------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCC
Q 024021          154 ---------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVG  221 (274)
Q Consensus       154 ---------~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-~~~~  221 (274)
                               ....+++++++|+++...  .++||.|+...++++++++.+..+++.+.++|+|||.+++..+... ....
T Consensus        82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~  161 (213)
T TIGR03840        82 VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA  161 (213)
T ss_pred             eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC
Confidence                     012469999999998543  3579999999999999999999999999999999998777766542 3346


Q ss_pred             CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       222 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      ++++..+.+++.+++.. +|.+..+......
T Consensus       162 gpp~~~~~~eL~~~f~~-~~~i~~~~~~~~~  191 (213)
T TIGR03840       162 GPPFSVSPAEVEALYGG-HYEIELLESRDVL  191 (213)
T ss_pred             CcCCCCCHHHHHHHhcC-CceEEEEeecccc
Confidence            78888999999999975 6888877765543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.90  E-value=7e-22  Score=160.88  Aligned_cols=179  Identities=21%  Similarity=0.354  Sum_probs=144.1

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ..+|+++|..+..+|+...+++.+.+++.... .++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......
T Consensus         3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~   82 (218)
T PRK13255          3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT   82 (218)
T ss_pred             HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence            46899999999999998999999999887543 34579999999999999999999999999999999999875422111


Q ss_pred             -----------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCCCC
Q 024021          154 -----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDH  219 (274)
Q Consensus       154 -----------~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~-~~~~~  219 (274)
                                 ....++++.++|++++.+  ...||+|+...++++++++.+..++..+.++|+|||.+++..+ .....
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~  162 (218)
T PRK13255         83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE  162 (218)
T ss_pred             ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence                       013579999999998543  2579999999999999999999999999999999996554333 23344


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      ..|+++.++.+++.+++.. +|.+..+........
T Consensus       163 ~~gPp~~~~~~el~~~~~~-~~~i~~~~~~~~~~~  196 (218)
T PRK13255        163 LAGPPFSVSDEEVEALYAG-CFEIELLERQDVLED  196 (218)
T ss_pred             CCCCCCCCCHHHHHHHhcC-CceEEEeeecccccc
Confidence            5788889999999999964 488888776554443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.90  E-value=4.6e-22  Score=161.23  Aligned_cols=174  Identities=17%  Similarity=0.310  Sum_probs=147.9

Q ss_pred             cccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021           74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      ...+|+++|..+..+|+...+++.+.+++..... ++.+||++|||.|..+.+|+..|++|+|+|+|+.+++.+.+....
T Consensus         8 ~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~   87 (226)
T PRK13256          8 NNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTI   87 (226)
T ss_pred             CHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCC
Confidence            4468999999999999999999999888876644 457999999999999999999999999999999999998663211


Q ss_pred             C-----------CCCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          153 L-----------PNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       153 ~-----------~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      .           ....++++.++|++++.+    .++||+|+...++++++++.+..+++.+.++|+|||.+++..+...
T Consensus        88 ~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256         88 NYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             CcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence            0           012479999999999643    2589999999999999999999999999999999999998888655


Q ss_pred             CCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          218 DHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ....||||..+.+++.+++.. +|.+..+..
T Consensus       168 ~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~~  197 (226)
T PRK13256        168 KKSQTPPYSVTQAELIKNFSA-KIKFELIDS  197 (226)
T ss_pred             CCCCCCCCcCCHHHHHHhccC-CceEEEeee
Confidence            556899999999999999976 577666654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.89  E-value=3.1e-22  Score=162.63  Aligned_cols=174  Identities=40%  Similarity=0.758  Sum_probs=134.5

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS-  152 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-  152 (274)
                      ..+|++.|..+..+|+.+.+.+.+.+++..... ++.+||..|||.|..+..|++.|.+|+|+|+|+.+++.+.+.... 
T Consensus         3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~   82 (218)
T PF05724_consen    3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE   82 (218)
T ss_dssp             HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence            478999999999999999999999999987433 346999999999999999999999999999999999998543221 


Q ss_pred             ------CC----CCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE--EEccCCC
Q 024021          153 ------LP----NAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT--LMFPISD  218 (274)
Q Consensus       153 ------~~----~~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~--~~~~~~~  218 (274)
                            ..    ...++++.++|+++..+.  ++||+|+-..+++.++++.+..+.+.+.++|+|||.+++  ..+.. .
T Consensus        83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~-~  161 (218)
T PF05724_consen   83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ-G  161 (218)
T ss_dssp             EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C-S
T ss_pred             CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-c
Confidence                  00    134689999999995443  479999999999999999999999999999999999443  33333 3


Q ss_pred             CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          219 HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ...||||..+.+++.+++. .+|++..++...
T Consensus       162 ~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~  192 (218)
T PF05724_consen  162 EMEGPPFSVTEEEVRELFG-PGFEIEELEEED  192 (218)
T ss_dssp             CSSSSS----HHHHHHHHT-TTEEEEEEEEEE
T ss_pred             CCCCcCCCCCHHHHHHHhc-CCcEEEEEeccc
Confidence            3449999999999999999 689999888733

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.87  E-value=6.2e-21  Score=153.68  Aligned_cols=154  Identities=14%  Similarity=0.255  Sum_probs=125.3

Q ss_pred             CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024021           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  170 (274)
                      ...+.+.+.+.+.  ..++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.++++....++ .++++...|+.+..
T Consensus        15 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~   91 (197)
T PRK11207         15 LTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT   91 (197)
T ss_pred             CCCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC
Confidence            3456777777766  34568999999999999999999999999999999999999998877655 35889999987754


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE-EccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL-MFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ..++||+|++..++++++++.+..+++.+.++|+|||++++. .+...+.  ..++++.++.+++.++++  ||.++...
T Consensus        92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~  169 (197)
T PRK11207         92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN  169 (197)
T ss_pred             cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence            456799999999999888778899999999999999996554 3333221  245677789999999998  89988875


Q ss_pred             ec
Q 024021          248 DN  249 (274)
Q Consensus       248 ~~  249 (274)
                      ..
T Consensus       170 ~~  171 (197)
T PRK11207        170 ED  171 (197)
T ss_pred             CC
Confidence            53

>PLN02244 tocopherol O-methyltransferase

Probab=99.86  E-value=3.6e-20  Score=161.17  Aligned_cols=190  Identities=23%  Similarity=0.307  Sum_probs=140.8

Q ss_pred             hhHHHHHHHHhhcccccchhHhhhcCCC--CccCCC--------ccHHHHHHHhcCC------CCCCeEEEEcCCcchhH
Q 024021           60 HPRVNKLQQLMHIESSGGWEKCWEEGLT--PWDIGQ--------PAPIIVHLHQSGA------LPKGRALVPGCGTGYDV  123 (274)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~  123 (274)
                      ....+.+..+|+ .....|+..|+....  .|....        ....+..++....      .++.+|||+|||+|..+
T Consensus        55 ~~~~~~i~~~Yd-~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~  133 (340)
T PLN02244         55 ADLKEGIAEFYD-ESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS  133 (340)
T ss_pred             hhHHHHHHHHHc-cchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH
Confidence            334555666666 556788888765432  232210        0122334444433      34579999999999999


Q ss_pred             HHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHh
Q 024021          124 VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKD  201 (274)
Q Consensus       124 ~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~  201 (274)
                      ..+++. +.+|+|+|+++.+++.++++....+..++++|+.+|+.+ +.++++||+|++..+++|+++  ...+++++.+
T Consensus       134 ~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~r  211 (340)
T PLN02244        134 RYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQELAR  211 (340)
T ss_pred             HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHHHHHH
Confidence            999874 789999999999999999998877776789999999987 456689999999999999864  4678999999


Q ss_pred             cccCCcEEEEEEccCCCCCC--------------------CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          202 FLKPDGELITLMFPISDHVG--------------------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       202 ~L~pgG~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      +|+|||.+++.++.......                    ..+...+.+++.++++++||..+.+.++...
T Consensus       212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~  282 (340)
T PLN02244        212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEH  282 (340)
T ss_pred             HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHH
Confidence            99999999998764322110                    1112247899999999999999998876643

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.85  E-value=7.2e-21  Score=156.40  Aligned_cols=149  Identities=23%  Similarity=0.266  Sum_probs=86.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~  172 (274)
                      .+...+.  ..++.+|||+|||||.++..+++   +..+|+++|+|+.|++.|+++....+.. +++++++|+.+ +.++
T Consensus        38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d  114 (233)
T PF01209_consen   38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD  114 (233)
T ss_dssp             HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T
T ss_pred             HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC
Confidence            3444443  45678999999999999998876   3469999999999999999998876553 79999999998 5677


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------C----------
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------G----------  221 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------------------~----------  221 (274)
                      ++||+|++...+..+++  ....+++++|+|||||.+++.+++.....                     .          
T Consensus       115 ~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~  192 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLP  192 (233)
T ss_dssp             T-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH------------------------
T ss_pred             CceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccc
Confidence            89999999999998864  46789999999999999999888765430                     0          


Q ss_pred             -CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          222 -GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       222 -~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                       ....+.+.+++.++++++||+.++.....
T Consensus       193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~  222 (233)
T PF01209_consen  193 ESIRRFPSPEELKELLEEAGFKNVEYRPLT  222 (233)
T ss_dssp             ------------------------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence             00112478999999999999988765543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.84  E-value=5.4e-20  Score=154.30  Aligned_cols=149  Identities=17%  Similarity=0.197  Sum_probs=120.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCe
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~  175 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+|+++|+++++++.|+++....+..++++++.+|+.+.  .+.++|
T Consensus        34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            445555545556799999999999999999999999999999999999999998877667899999998763  345789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------------CCCCCcccCHHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------------VGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~  232 (274)
                      |+|++..+++++++.  ..++.++.++|+|||++++..++....                       ...+.+.++++++
T Consensus       114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l  191 (255)
T PRK11036        114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV  191 (255)
T ss_pred             CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence            999999999998643  578999999999999998876543210                       1112345689999


Q ss_pred             HHHHhcCCCcEEEEee
Q 024021          233 EEVLQPMGFQAISIVD  248 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~~  248 (274)
                      .++++++||+++...-
T Consensus       192 ~~~l~~aGf~~~~~~g  207 (255)
T PRK11036        192 YQWLEEAGWQIMGKTG  207 (255)
T ss_pred             HHHHHHCCCeEeeeee
Confidence            9999999999986544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=6.5e-20  Score=151.89  Aligned_cols=197  Identities=18%  Similarity=0.164  Sum_probs=153.6

Q ss_pred             HHHHHhhcccccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHH
Q 024021           65 KLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIA  142 (274)
Q Consensus        65 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~  142 (274)
                      .+.+++.+....||..+|......-. ..-...+...++.+ ..++++|||||||+|.+++++++. |.+|+|+++|+++
T Consensus        29 ~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q  107 (283)
T COG2230          29 DFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ  107 (283)
T ss_pred             HHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH
Confidence            56667777788888888876543101 11133344444444 456689999999999999999985 8999999999999


Q ss_pred             HHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-
Q 024021          143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-  221 (274)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-  221 (274)
                      .+.+++++...++..+++++..|..+...  +||-|++.++++|+..+..+.++..+.++|+|||.+++......+... 
T Consensus       108 ~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~  185 (283)
T COG2230         108 LAYAEKRIAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR  185 (283)
T ss_pred             HHHHHHHHHHcCCCcccEEEecccccccc--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc
Confidence            99999999999988899999999987553  399999999999998888999999999999999999987776665322 


Q ss_pred             CC-----------CcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024021          222 GP-----------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV  269 (274)
Q Consensus       222 ~~-----------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (274)
                      +.           ....+..++.+..+++||.+.........+     ..++..|...+
T Consensus       186 ~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hY-----a~Tl~~W~~~f  239 (283)
T COG2230         186 RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHY-----ARTLRLWRERF  239 (283)
T ss_pred             cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHH-----HHHHHHHHHHH
Confidence            11           011367999999999999998877655433     46777776654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.83  E-value=1.6e-19  Score=142.53  Aligned_cols=166  Identities=20%  Similarity=0.275  Sum_probs=120.5

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC
Q 024021           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN  155 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~  155 (274)
                      ++|.+.|..+..       +..+.+.++  ..++.++||+|||.|.++.+|++.|+.|+++|.|+.+++.+++.....++
T Consensus         7 ~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l   77 (192)
T PF03848_consen    7 DYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL   77 (192)
T ss_dssp             THHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred             HHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence            455666654322       344555544  34578999999999999999999999999999999999999998877765


Q ss_pred             CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHH
Q 024021          156 AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDY  232 (274)
Q Consensus       156 ~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~~~~~~~~~~~~~  232 (274)
                      .  ++....|+.+...++.||+|++..++.+++.+.++.+++.+...++|||++++..+.....   ...+++.+.+.|+
T Consensus        78 ~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL  155 (192)
T PF03848_consen   78 D--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL  155 (192)
T ss_dssp             T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred             e--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence            3  8999999988666688999999999999999999999999999999999988865533222   2234566788999


Q ss_pred             HHHHhcCCCcEEEEeecccccC
Q 024021          233 EEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      ...+.  ||+++...+..-..+
T Consensus       156 ~~~y~--dW~il~y~E~~g~~h  175 (192)
T PF03848_consen  156 REYYA--DWEILKYNEDVGELH  175 (192)
T ss_dssp             HHHTT--TSEEEEEEEEEEEEE
T ss_pred             HHHhC--CCeEEEEEcccccee
Confidence            99988  599988766444444

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.83  E-value=3e-19  Score=150.07  Aligned_cols=172  Identities=17%  Similarity=0.227  Sum_probs=129.9

Q ss_pred             ccccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHh
Q 024021           73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELS  150 (274)
Q Consensus        73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~  150 (274)
                      ..-..|+..|+.+...  .+. .+....++.... .++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.|+++.
T Consensus        19 ~~~~~~e~~~g~~~~~--~gg-~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~   95 (263)
T PTZ00098         19 EGIKAYEFIFGEDYIS--SGG-IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN   95 (263)
T ss_pred             ccchhHHHHhCCCCCC--CCc-hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence            3345667777654432  122 233555665553 4557999999999999988876 5679999999999999999987


Q ss_pred             hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------
Q 024021          151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------  221 (274)
Q Consensus       151 ~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--------  221 (274)
                      ...   +++.+..+|+.+ +.++++||+|++..++.|++......+++++.++|+|||.+++.++.......        
T Consensus        96 ~~~---~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~  172 (263)
T PTZ00098         96 SDK---NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAY  172 (263)
T ss_pred             CcC---CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHH
Confidence            542   579999999987 45567899999999888887667789999999999999999998764432110        


Q ss_pred             ---CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          222 ---GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       222 ---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                         ......+.+++.++++++||+.+...+..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        173 IKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence               01122478999999999999999887643

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.83  E-value=1.8e-19  Score=146.71  Aligned_cols=138  Identities=22%  Similarity=0.286  Sum_probs=117.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ++.+|||+|||||.++..+++.  ..+|+++|+|+.|++.|+++....+..+ ++|+.+|+.+ +.++++||+|.+...+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence            6899999999999999999984  3699999999999999999998877665 9999999999 7788999999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------CC-----------CcccCHHH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------GP-----------PYKVSVSD  231 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------------------~~-----------~~~~~~~~  231 (274)
                      .+++  +.+.+|++++|+|||||++++.++.......                      +.           ..+.+.++
T Consensus       130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~  207 (238)
T COG2226         130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE  207 (238)
T ss_pred             hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence            9996  4578999999999999999999987653300                      00           11248899


Q ss_pred             HHHHHhcCCCcEEEEee
Q 024021          232 YEEVLQPMGFQAISIVD  248 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~  248 (274)
                      +.++++++||..+....
T Consensus       208 l~~~~~~~gf~~i~~~~  224 (238)
T COG2226         208 LKQMIEKAGFEEVRYEN  224 (238)
T ss_pred             HHHHHHhcCceEEeeEe
Confidence            99999999999887433

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.82  E-value=6.6e-19  Score=141.64  Aligned_cols=154  Identities=10%  Similarity=0.115  Sum_probs=119.1

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      ...+...+.  ..++.+|||+|||+|.++..+++.|.+|+++|+++.+++.++++....+.  ++.+...|+......++
T Consensus        19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~   94 (195)
T TIGR00477        19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED   94 (195)
T ss_pred             hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence            444555554  33467999999999999999999999999999999999999988776654  37777788765444568


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      ||+|+++.++++++.+....+++.+.++|+|||++++..+..... ..  ..++.++.+++.+++.  +|+++.......
T Consensus        95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~  172 (195)
T TIGR00477        95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVG  172 (195)
T ss_pred             CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccc
Confidence            999999999999987788899999999999999966655432221 22  2345689999999997  599988876543


Q ss_pred             ccC
Q 024021          252 AIG  254 (274)
Q Consensus       252 ~~~  254 (274)
                      .++
T Consensus       173 ~~~  175 (195)
T TIGR00477       173 ELH  175 (195)
T ss_pred             ccc
Confidence            333

Part of a tellurite-reducing operon tehA and tehB

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.82  E-value=3.2e-20  Score=147.58  Aligned_cols=200  Identities=19%  Similarity=0.227  Sum_probs=153.0

Q ss_pred             hcccccchhHhhhcCCCCccCCCccHHHHH----HHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHH
Q 024021           71 HIESSGGWEKCWEEGLTPWDIGQPAPIIVH----LHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIA  142 (274)
Q Consensus        71 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~  142 (274)
                      ......+|+.+|..+...|.  .-+..+..    ++........+|||+|||.|.....+.+    ++..++++|.||.+
T Consensus        32 ~~~~~k~wD~fy~~~~~rFf--kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A  109 (264)
T KOG2361|consen   32 EREASKYWDTFYKIHENRFF--KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA  109 (264)
T ss_pred             hcchhhhhhhhhhhcccccc--chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence            34566899999998766432  11222222    2222222234899999999999998887    34799999999999


Q ss_pred             HHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          143 IKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      ++..+++.....  .++.-...|+..     ....+++|+|++..++..++++....+++.+.++|||||.+++-+++..
T Consensus       110 i~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  110 IELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             HHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            999999876554  456666666655     3456789999999999999999999999999999999999999998876


Q ss_pred             CC-------------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc-ccCCccchhHHHHhhhhhcccCC
Q 024021          218 DH-------------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL-AIGPRKGREKLGRWKRSVRHSLL  274 (274)
Q Consensus       218 ~~-------------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  274 (274)
                      +.                   .++..|+++.+++.++|+++||..++.....+ .........+.+.|.+..++.|+
T Consensus       188 DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~  264 (264)
T KOG2361|consen  188 DLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL  264 (264)
T ss_pred             hHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence            43                   23345889999999999999999999866554 44444467888899999888764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.82  E-value=2.5e-19  Score=150.46  Aligned_cols=165  Identities=22%  Similarity=0.253  Sum_probs=123.4

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..+++... .++.+|||||||.|.++..+++. |++|+|+++|+++.+.+++++...++.+++++...|..+...  +|
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f  128 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF  128 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence            444455443 45679999999999999999996 999999999999999999999999998899999999987543  89


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-----------CCCCcccCHHHHHHHHhc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-----------GGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~-----------~~~~~~~~~~~~~~~l~~  238 (274)
                      |.|++..+++|+.......+++++.++|+|||++++-.......      .           +|. ..++.+++...++.
T Consensus       129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~~~~  207 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRAAED  207 (273)
T ss_dssp             SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHHHHH
T ss_pred             CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHHHhc
Confidence            99999999999988888999999999999999998765543321      0           111 12478899999999


Q ss_pred             CCCcEEEEeecccccCCccchhHHHHhhhhhc
Q 024021          239 MGFQAISIVDNKLAIGPRKGREKLGRWKRSVR  270 (274)
Q Consensus       239 ~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (274)
                      .||++..+......+     .+++..|.+.+.
T Consensus       208 ~~l~v~~~~~~~~hY-----~~Tl~~W~~~f~  234 (273)
T PF02353_consen  208 AGLEVEDVENLGRHY-----ARTLRAWRENFD  234 (273)
T ss_dssp             TT-EEEEEEE-HHHH-----HHHHHHHHHHHH
T ss_pred             CCEEEEEEEEcCcCH-----HHHHHHHHHHHH
Confidence            999999888765444     478888887653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.82  E-value=3.4e-19  Score=152.65  Aligned_cols=141  Identities=15%  Similarity=0.166  Sum_probs=114.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~  186 (274)
                      ++.+|||+|||+|.++..+++.|.+|+|+|+++++++.|+.+....+...+++++.+|+.+. ...++||+|++..+++|
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            45699999999999999999999999999999999999998865544445799999998773 34568999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------------CCCC-C--CcccCHHHHHHHHhcCCCcEEEEe
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISD----------------HVGG-P--PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~----------------~~~~-~--~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +++.  ..+++.+.++|+|||.+++.+.....                ...+ .  ..+++++++.++++++||+++.+.
T Consensus       211 v~d~--~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~  288 (322)
T PLN02396        211 VANP--AEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA  288 (322)
T ss_pred             cCCH--HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence            9654  57999999999999999998754421                0111 1  124689999999999999998875


Q ss_pred             ecc
Q 024021          248 DNK  250 (274)
Q Consensus       248 ~~~  250 (274)
                      -..
T Consensus       289 G~~  291 (322)
T PLN02396        289 GFV  291 (322)
T ss_pred             eeE
Confidence            533

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.81  E-value=3.9e-19  Score=130.22  Aligned_cols=106  Identities=31%  Similarity=0.430  Sum_probs=91.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCCCCCCCeeEEEecc-c
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~D~v~~~~-~  183 (274)
                      |+.+|||+|||+|..+..+++  ++.+++++|+++++++.|+++....+..++++++.+|+ ......++||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            468999999999999999999  89999999999999999999996666678999999999 4455566799999999 5


Q ss_pred             ccccC-hhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          184 FCAIE-PEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++++. .+....+++++.+.|+|||++++..
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            55333 2567889999999999999999865

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.81  E-value=1.3e-18  Score=146.09  Aligned_cols=141  Identities=19%  Similarity=0.160  Sum_probs=111.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhc--CCCCcceEEEEcccCC-CCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~-~~~~~~~D~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.   ..+|+|+|+|++|++.|+++...  .....+++++.+|+.+ +.++++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            45679999999999999888762   35999999999999999887542  1223579999999988 455678999999


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------C--C---------CcccCH
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------G--P---------PYKVSV  229 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--------------------~--~---------~~~~~~  229 (274)
                      ..+++++++  ...+++++.++|+|||++++.++.......                    +  .         ..+.+.
T Consensus       152 ~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~  229 (261)
T PLN02233        152 GYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG  229 (261)
T ss_pred             ecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence            999999863  467899999999999999998876543200                    0  0         123589


Q ss_pred             HHHHHHHhcCCCcEEEEeec
Q 024021          230 SDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +++.++++++||+.+.....
T Consensus       230 ~el~~ll~~aGF~~~~~~~~  249 (261)
T PLN02233        230 EELEKLALEAGFSSAKHYEI  249 (261)
T ss_pred             HHHHHHHHHCCCCEEEEEEc
Confidence            99999999999999876553

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.80  E-value=1.6e-18  Score=144.64  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=93.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++    ++.+++++|+|+.+++.|+++....+...+++++.+|+.+... ..+|+|+++
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~  132 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN  132 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence            34568999999999999887764    5789999999999999999999876665689999999987443 359999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .++++++++....++++++++|+|||.+++.+.
T Consensus       133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~  165 (247)
T PRK15451        133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK  165 (247)
T ss_pred             hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            999999877778999999999999999999773

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.79  E-value=6.5e-18  Score=143.93  Aligned_cols=150  Identities=15%  Similarity=0.225  Sum_probs=118.9

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      ...+...+..  .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++....+.  ++++...|+.....+++
T Consensus       109 ~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~  184 (287)
T PRK12335        109 HSEVLEAVQT--VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE  184 (287)
T ss_pred             cHHHHHHhhc--cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence            3334444442  3456999999999999999999999999999999999999999877664  58888888877545678


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-ccCCCCCCCC--CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGP--PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ||+|++..++++++++....+++.+.++|+|||++++.. +...+.....  ++.++.+++.+.++.  |+++...+..
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~  261 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV  261 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence            999999999999988888899999999999999976654 3322222122  455789999999975  9998886543

>TIGR00452 methyltransferase, putative

Probab=99.78  E-value=7.2e-18  Score=143.91  Aligned_cols=145  Identities=21%  Similarity=0.275  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++++|||+|||+|..+..++..|. .|+|+|+|+.++..++..........++.+..+++.+..+...||+|++++++
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL  198 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL  198 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence            45678999999999999988888776 79999999999876543222111224688888888775555689999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +|+++.  ..++.+++++|+|||.+++.+.......             .+..+..+..++..+++++||+.+++.....
T Consensus       199 ~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~  276 (314)
T TIGR00452       199 YHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK  276 (314)
T ss_pred             hccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence            998543  5789999999999999998764332110             1123345889999999999999999877554


Q ss_pred             c
Q 024021          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       277 t  277 (314)
T TIGR00452       277 T  277 (314)
T ss_pred             C
Confidence            4

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.78  E-value=5.1e-18  Score=139.68  Aligned_cols=142  Identities=24%  Similarity=0.326  Sum_probs=116.6

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|||+|||+|..+..+++  ++.+++|+|+++++++.++++....+..++++++..|+......++||+|++..+++++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999998877  35799999999999999999998877778899999999764335689999999999998


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----CCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISD-----HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                      ++  ...+++.+.++|+|||.+++.++....     ......+..+.+++.++++++||++++.......+
T Consensus        81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~  149 (224)
T smart00828       81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI  149 (224)
T ss_pred             CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence            53  468999999999999999998764321     11122345688999999999999999988765544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.78  E-value=7.8e-18  Score=145.14  Aligned_cols=145  Identities=24%  Similarity=0.349  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..++..+. .|+|+|+++.++..++......+...+++++.+|+.+....+.||+|++..++
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl  199 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL  199 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence            35678999999999999999988765 69999999998876544322222224799999999875446789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +|+.+  ...+++++++.|+|||.+++..+......             .+..+..+.+++..+++++||+.+.+.....
T Consensus       200 ~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        200 YHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV  277 (322)
T ss_pred             hccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence            98853  35789999999999999998654322110             1112334889999999999999999877554


Q ss_pred             c
Q 024021          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       278 t  278 (322)
T PRK15068        278 T  278 (322)
T ss_pred             C
Confidence            3

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.78  E-value=1.8e-18  Score=138.66  Aligned_cols=138  Identities=17%  Similarity=0.189  Sum_probs=113.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||-|.++..+++.|+.|+|+|+++.+++.|+.+..+.++  .+++....+.+... .++||+|+|..+++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            5789999999999999999999999999999999999999999988774  36677777776433 37999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCCC---CcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGGP---PYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      |++++  ..++..+.+.+||||.+++.+......                +.+.   .-.+.++|+..++...|+.+.+.
T Consensus       136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~  213 (243)
T COG2227         136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR  213 (243)
T ss_pred             ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence            99765  469999999999999999988664321                1111   12257899999999999988776


Q ss_pred             ee
Q 024021          247 VD  248 (274)
Q Consensus       247 ~~  248 (274)
                      .-
T Consensus       214 ~g  215 (243)
T COG2227         214 KG  215 (243)
T ss_pred             cc
Confidence            54

>TIGR00740 methyltransferase, putative

Probab=99.77  E-value=1.5e-17  Score=138.24  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++    ++.+++|+|+++.+++.|+++....+...+++++.+|+.+... ..+|+|++..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence            4567999999999999988875    4779999999999999999998765544579999999987543 3589999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------C---------------CCCcccCHHH
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------G---------------GPPYKVSVSD  231 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----------------~---------------~~~~~~~~~~  231 (274)
                      ++++++++....+++++.++|+|||.+++.+.......                .               +..+..+.++
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~  210 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET  210 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence            99999877788999999999999999999864322110                0               1123457889


Q ss_pred             HHHHHhcCCCcEEE
Q 024021          232 YEEVLQPMGFQAIS  245 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~  245 (274)
                      +.++++++||..+.
T Consensus       211 ~~~~l~~aGF~~~~  224 (239)
T TIGR00740       211 HKARLKNVGFSHVE  224 (239)
T ss_pred             HHHHHHHcCCchHH
Confidence            99999999998544

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.77  E-value=2.4e-17  Score=136.36  Aligned_cols=150  Identities=17%  Similarity=0.188  Sum_probs=115.2

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCC
Q 024021           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTE  173 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~  173 (274)
                      ..++.... .++.+|||+|||+|.++..+++   ++.+|+|+|+++.+++.++++....+. ++++++.+|+... .+.+
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence            33444333 3467999999999999998876   356999999999999999999876554 5799999999873 4567


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------------------
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------------------  221 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--------------------------------  221 (274)
                      +||+|++..+++++++  ...+++++.++|+|||.+++.+........                                
T Consensus       114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence            8999999999888754  357899999999999999987754322100                                


Q ss_pred             CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       222 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .....++.+++.++++++||+.+++.....
T Consensus       192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~  221 (231)
T TIGR02752       192 STRDFPGMDELAEMFQEAGFKDVEVKSYTG  221 (231)
T ss_pred             HHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence            001123678999999999999998877553

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.75  E-value=3.3e-17  Score=137.46  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=113.7

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      ..++.... .++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.|++.        +++++.+|+.+..+.++|
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f   90 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT   90 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence            34444443 45689999999999999999874  77999999999999999763        378899999876566789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCC-----CcccCHHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGP-----PYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------~~~~-----~~~~~~~~~  232 (274)
                      |+|+++.+++++++  ...++.++.++|+|||.+++........                  ....     ....+.+++
T Consensus        91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  168 (255)
T PRK14103         91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY  168 (255)
T ss_pred             eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence            99999999999864  3678999999999999998865432110                  0001     123478999


Q ss_pred             HHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024021          233 EEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      .++|+++||++..... ... ....+.+.+..|.+
T Consensus       169 ~~~l~~aGf~v~~~~~-~~~-~~~~~~~~~~~~~~  201 (255)
T PRK14103        169 AELLTDAGCKVDAWET-TYV-HQLTGEDPVLDWIT  201 (255)
T ss_pred             HHHHHhCCCeEEEEee-eee-eeCCCchhhhhhhh
Confidence            9999999998644333 111 12233444555554

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.75  E-value=6.4e-17  Score=132.69  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=113.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++|+|++++++..|+++....+...++.+..+|+.+..  ++||+|++..++.+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~  131 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIH  131 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHh
Confidence            3468999999999999999998888999999999999999999876655457999999987754  78999999999988


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                      ++++....++.++.+++++++++.+......             .......+.++.+++.++++++||+++........+
T Consensus       132 ~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~  211 (219)
T TIGR02021       132 YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF  211 (219)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence            8777778899999999887655554322110             000111234689999999999999999887655443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.75  E-value=2.2e-17  Score=128.57  Aligned_cols=135  Identities=27%  Similarity=0.348  Sum_probs=104.1

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCe
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  175 (274)
                      .+..+... ..++.+|||+|||+|.++..+++.+.+++|+|+++.+++.           .++.....+... ..+.++|
T Consensus        12 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~f   79 (161)
T PF13489_consen   12 LLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSF   79 (161)
T ss_dssp             HHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSE
T ss_pred             HHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccch
Confidence            34444432 3556899999999999999998888999999999999988           112333332223 4556799


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      |+|+++.+++|++  +...+++.+.++|+|||++++........             ..+....++.+++.++++++||+
T Consensus        80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~  157 (161)
T PF13489_consen   80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE  157 (161)
T ss_dssp             EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred             hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence            9999999999997  46789999999999999999988765310             11233457999999999999999


Q ss_pred             EEE
Q 024021          243 AIS  245 (274)
Q Consensus       243 ~~~  245 (274)
                      +++
T Consensus       158 iv~  160 (161)
T PF13489_consen  158 IVE  160 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.74  E-value=4.5e-17  Score=148.45  Aligned_cols=169  Identities=24%  Similarity=0.277  Sum_probs=123.7

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ..|..+|+.+..-   .........+++... .++.+|||+|||+|..+..+++ .+.+|+|+|+|+.+++.|+++....
T Consensus       236 ~~~~~f~g~~~~v---~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~  312 (475)
T PLN02336        236 LRYERVFGEGFVS---TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR  312 (475)
T ss_pred             HHHHHHhCCCCCC---CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC
Confidence            3466666543321   111112344444433 3457999999999999988876 5779999999999999999886533


Q ss_pred             CCCcceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC---------
Q 024021          154 PNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP---------  223 (274)
Q Consensus       154 ~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~---------  223 (274)
                        ..+++|..+|+... .+.++||+|++..+++|+++  ...++++++++|+|||.+++.++.........         
T Consensus       313 --~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~  388 (475)
T PLN02336        313 --KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR  388 (475)
T ss_pred             --CCceEEEEcCcccCCCCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc
Confidence              35799999999874 45678999999999999864  46789999999999999999876543211110         


Q ss_pred             -CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          224 -PYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       224 -~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                       ....+.+++.++++++||.++.+++...
T Consensus       389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~~  417 (475)
T PLN02336        389 GYDLHDVQAYGQMLKDAGFDDVIAEDRTD  417 (475)
T ss_pred             CCCCCCHHHHHHHHHHCCCeeeeeecchH
Confidence             1234789999999999999998766443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.74  E-value=2.7e-16  Score=134.43  Aligned_cols=185  Identities=17%  Similarity=0.219  Sum_probs=123.8

Q ss_pred             HHHHHHHHhhcccccchhHhhhcCCC----CccCC----CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe
Q 024021           62 RVNKLQQLMHIESSGGWEKCWEEGLT----PWDIG----QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY  132 (274)
Q Consensus        62 ~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~----~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~  132 (274)
                      ..+....++.+.....|...|+....    .++..    .....+..++... ..++.+|||+|||+|.++..+++.|.+
T Consensus        89 ~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~  168 (315)
T PLN02585         89 DKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAI  168 (315)
T ss_pred             HHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence            34455566654445667777776221    11211    1112233344322 235679999999999999999999999


Q ss_pred             EEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcE
Q 024021          133 VVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       133 v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  208 (274)
                      |+|+|+|+.+++.++++.....    ...+++|...|+...  .++||+|++..+++|++++....++..+.+ +.+||.
T Consensus       169 V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l  245 (315)
T PLN02585        169 VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL  245 (315)
T ss_pred             EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE
Confidence            9999999999999999876541    123578888887644  478999999999998877666667777775 455555


Q ss_pred             EEEEEccCCC----------CCCCC-----CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          209 LITLMFPISD----------HVGGP-----PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       209 ~~~~~~~~~~----------~~~~~-----~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++. ......          ...++     .+..+.+++.++++++||+++..+...
T Consensus       246 iIs-~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~  301 (315)
T PLN02585        246 IIS-FAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA  301 (315)
T ss_pred             EEE-eCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence            443 321110          01121     233479999999999999988765433

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.73  E-value=4.1e-17  Score=124.34  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=126.3

Q ss_pred             cchhHhhhcCCC----------CccCCCccHHHHHHHhcC------CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEe
Q 024021           76 GGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG------ALPKGRALVPGCGTGYDVVAMASPER--YVVGLE  137 (274)
Q Consensus        76 ~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD  137 (274)
                      .||++.|.....          -|........+..++...      .....+|||+|||.|.++..|++.|.  ..+|+|
T Consensus        19 ~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD   98 (227)
T KOG1271|consen   19 SYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD   98 (227)
T ss_pred             HHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence            577777765222          355444445555555432      12234999999999999999999776  489999


Q ss_pred             CChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEE
Q 024021          138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      +|+.+++.|+...+..+.++.++|.+.|+.+ ....++||+|+..+.+..+.  +    ..+..++..+.+.|+|||+++
T Consensus        99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv  178 (227)
T KOG1271|consen   99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV  178 (227)
T ss_pred             cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence            9999999999999988888889999999998 44567899999998887752  1    233678899999999999999


Q ss_pred             EEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +...+           ++.+|+.+.++..||......+.
T Consensus       179 ItSCN-----------~T~dELv~~f~~~~f~~~~tvp~  206 (227)
T KOG1271|consen  179 ITSCN-----------FTKDELVEEFENFNFEYLSTVPT  206 (227)
T ss_pred             EEecC-----------ccHHHHHHHHhcCCeEEEEeecc
Confidence            97643           37999999999999888765543

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.73  E-value=3.6e-16  Score=129.19  Aligned_cols=188  Identities=14%  Similarity=0.139  Sum_probs=129.3

Q ss_pred             HHHHHHHhhcccccchhHhhhcCCCCccCC----Cc---cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEE
Q 024021           63 VNKLQQLMHIESSGGWEKCWEEGLTPWDIG----QP---APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVV  134 (274)
Q Consensus        63 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~  134 (274)
                      ...+.+.+.+...+.|...|..........    ..   ...+..++... ..++.+|||+|||+|..+..+++.+..|+
T Consensus        10 ~~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~   89 (230)
T PRK07580         10 KSEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVV   89 (230)
T ss_pred             hhhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEE
Confidence            345555666555688988887643321100    01   11223333321 23567999999999999999998888999


Q ss_pred             EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       135 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ++|+++.+++.|+++....+..+++.+..+|+..  ..++||+|++..++++++++....+++.+.+.+++++.+.+...
T Consensus        90 ~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~  167 (230)
T PRK07580         90 ASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPY  167 (230)
T ss_pred             EEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCc
Confidence            9999999999999998776655679999999543  24679999999999888877788888999887754444332211


Q ss_pred             cCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          215 PIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       215 ~~~-------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      ...             ..........+..++.++++.+||++.........
T Consensus       168 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  218 (230)
T PRK07580        168 TPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG  218 (230)
T ss_pred             cHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence            100             00111123457899999999999999988775543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.72  E-value=2.1e-16  Score=126.82  Aligned_cols=137  Identities=16%  Similarity=0.132  Sum_probs=112.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--------CCCeEEEEeCChHHHHHHHHHhhcCCCCcc--eEEEEcccCC-CCCCCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFT-WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~-~~~~~~~  175 (274)
                      ..++++||++||||..+..+.+        .+.+|+++|++|+|++.++++....++..+  +.++.+|+.+ +++++.|
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            3458999999999999988876        236899999999999999999876655444  9999999999 6778899


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------CC----------------C
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------GG----------------P  223 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----------------~~----------------~  223 (274)
                      |.+...+.+..++  +.++.+++++|+|||||++.+.+|+..+..                .|                .
T Consensus       179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI  256 (296)
T KOG1540|consen  179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI  256 (296)
T ss_pred             eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh
Confidence            9999999888885  456899999999999999999998876520                00                0


Q ss_pred             CcccCHHHHHHHHhcCCCcEEE
Q 024021          224 PYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       224 ~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ..+.+.+++..+.+++||..+.
T Consensus       257 ~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  257 RRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hcCCCHHHHHHHHHHcCCcccc
Confidence            1123789999999999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.72  E-value=2.2e-16  Score=135.91  Aligned_cols=136  Identities=19%  Similarity=0.236  Sum_probs=110.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|. +.+++.++++....+..++++++.+|+++...+ .+|+|++..+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh  226 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY  226 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence            347999999999999998887  5679999997 899999999998888878999999999863322 379999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +++++....++++++++|+|||++++.++...+.. .+.                  -....+++.++++++||+.+.+
T Consensus       227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~  304 (306)
T TIGR02716       227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM  304 (306)
T ss_pred             cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence            88877778899999999999999999887443321 110                  0123689999999999988765

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.72  E-value=6.9e-17  Score=114.31  Aligned_cols=93  Identities=31%  Similarity=0.422  Sum_probs=80.3

Q ss_pred             EEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChh
Q 024021          113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE  190 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~  190 (274)
                      ||+|||+|..+..+++. +.+++++|+++++++.++++....    ++.+..+|+.+ +.++++||+|++..+++++  +
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~   74 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E   74 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence            89999999999999987 889999999999999999998654    36699999988 5667899999999999999  5


Q ss_pred             HHHHHHHHHHhcccCCcEEEE
Q 024021          191 MRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       191 ~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +...+++++.++|||||++++
T Consensus        75 ~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   75 DPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEE
T ss_pred             CHHHHHHHHHHHcCcCeEEeC
Confidence            668899999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.72  E-value=1.8e-16  Score=131.60  Aligned_cols=144  Identities=23%  Similarity=0.279  Sum_probs=107.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .+.+++|||||||.|+.+..++..|+ .|+|+|.++......+-.....+....+.++...+.+....+.||+|++.+++
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL  192 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL  192 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence            67789999999999999999999888 79999999877665433222222223344443445554446789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +|...+  -..+..+++.|+|||.+++.+......             -.+..|..+..-+..+++.+||+.+++.+...
T Consensus       193 YHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  193 YHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             hccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence            998544  467899999999999999866644322             12334556999999999999999999877553

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.71  E-value=6e-16  Score=122.92  Aligned_cols=135  Identities=18%  Similarity=0.272  Sum_probs=110.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+.  +++++.+|+.+.. .++||+|+++.++++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCC
Confidence            4457899999999999999998777999999999999999999876653  5888999987744 358999999988866


Q ss_pred             cChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~-------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      .++.                   ....+++.+.++|+|||.+++......          ...++.+.++++||....+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------~~~~~~~~l~~~gf~~~~~~  164 (179)
T TIGR00537        95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------GEPDTFDKLDERGFRYEIVA  164 (179)
T ss_pred             CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------ChHHHHHHHHhCCCeEEEEE
Confidence            5421                   145789999999999999988774332          37889999999999999888


Q ss_pred             ecccccC
Q 024021          248 DNKLAIG  254 (274)
Q Consensus       248 ~~~~~~~  254 (274)
                      ....+..
T Consensus       165 ~~~~~~~  171 (179)
T TIGR00537       165 ERGLFFE  171 (179)
T ss_pred             EeecCce
Confidence            7665543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.71  E-value=1.1e-16  Score=124.93  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=100.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~  189 (274)
                      .++||+|||.|.++..|+..+-+++++|+++.+++.|+++....   ++|++.+.|+.+..|.++||+|+++.+++++++
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~  121 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSEVLYYLDD  121 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES-GGGSSS
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEehHhHcCCC
Confidence            69999999999999999998889999999999999999999765   579999999999888899999999999999975


Q ss_pred             -hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          190 -EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       190 -~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                       +.+..+++.+...|+|||.+++..+... ...+..+.+..+-+.++|++. +..++..
T Consensus       122 ~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-~c~~wgh~~ga~tv~~~~~~~-~~~~~~~  178 (201)
T PF05401_consen  122 AEDLRAALDRLVAALAPGGHLVFGHARDA-NCRRWGHAAGAETVLEMLQEH-LTEVERV  178 (201)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEE-HH-HHHHTT-S--HHHHHHHHHHH-SEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEEecCC-cccccCcccchHHHHHHHHHH-hhheeEE
Confidence             6788999999999999999999876421 111112234678889999885 5554443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.71  E-value=1e-16  Score=127.30  Aligned_cols=134  Identities=19%  Similarity=0.245  Sum_probs=107.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      +.+|||+|||+|..+..++.  ++.+|+++|.++.+++.|+++....+.. +++++.+|+.+....++||+|+++..   
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~---  121 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV---  121 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc---
Confidence            68999999999999988875  6789999999999999999999888764 49999999988544668999998753   


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHH
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL  262 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~  262 (274)
                         .....+++.+.++|+|||.+++.....           ...++.++.+..|+.+..+.....+  +.++..++
T Consensus       122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  181 (187)
T PRK00107        122 ---ASLSDLVELCLPLLKPGGRFLALKGRD-----------PEEEIAELPKALGGKVEEVIELTLP--GLDGERHL  181 (187)
T ss_pred             ---cCHHHHHHHHHHhcCCCeEEEEEeCCC-----------hHHHHHHHHHhcCceEeeeEEEecC--CCCCcEEE
Confidence               123578899999999999999886332           5678888888889998777664443  33344443

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=1.3e-16  Score=123.31  Aligned_cols=105  Identities=26%  Similarity=0.375  Sum_probs=90.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~  182 (274)
                      .+.+|||+|||+|..+..+++   ++.+++|+|+++++++.|+++....+.. +++|+++|+.+...  .++||+|++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence            457999999999999999983   5779999999999999999998877765 89999999999432  27899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +++++++  ...+++.+.++|++||.+++..+.
T Consensus        82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             chhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence            9988853  457899999999999999988765

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.71  E-value=2.3e-17  Score=133.17  Aligned_cols=136  Identities=19%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      +++|||+|||+|.++..|++.|++|+|+|+++.+++.|+++........     ++++...|+....  +.||.|+|+.+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence            4789999999999999999999999999999999999999854443222     3667777766544  44999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCC---CCcccCHHHHHHHHhcCCCcEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGG---PPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++|+  .+.+.+++.+.+.|+|||.+++.+....-.                +.|   ..-+.+++++..+++..++++.
T Consensus       168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~  245 (282)
T KOG1270|consen  168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN  245 (282)
T ss_pred             HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence            9998  455789999999999999999987654321                111   1223689999999999999887


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+.-
T Consensus       246 ~v~G  249 (282)
T KOG1270|consen  246 DVVG  249 (282)
T ss_pred             hhhc
Confidence            7654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.71  E-value=2e-16  Score=124.00  Aligned_cols=157  Identities=22%  Similarity=0.314  Sum_probs=124.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..+..+|.|+|||+|..+..|++  +++.++|+|-|++|++.|+++.      ++++|..+|+..+.+....|+++++.+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAv  101 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAV  101 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhh
Confidence            34458999999999999999988  7899999999999999999887      679999999999988899999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CC----CCcccCHHHHHHHHhcCCC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GG----PPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------------------~~----~~~~~~~~~~~~~l~~~Gf  241 (274)
                      ++++++.  ..++.++...|.|||.+-+-.....+..                  .+    ..-..++..+-++|...+-
T Consensus       102 lqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~  179 (257)
T COG4106         102 LQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLAC  179 (257)
T ss_pred             hhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccc
Confidence            9999754  5789999999999999988664433220                  01    1112478888888888866


Q ss_pred             cEEEEeecccccCCccchhHHHHhhhhhccc
Q 024021          242 QAISIVDNKLAIGPRKGREKLGRWKRSVRHS  272 (274)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (274)
                      ++---++  ..++..++.+.|.-|.+.....
T Consensus       180 rvDiW~T--~Y~h~l~~a~aIvdWvkgTgLr  208 (257)
T COG4106         180 RVDIWHT--TYYHQLPGADAIVDWVKGTGLR  208 (257)
T ss_pred             eeeeeee--eccccCCCccchhhheeccccc
Confidence            5543333  4566667788888887766543

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.70  E-value=8.4e-16  Score=135.41  Aligned_cols=152  Identities=23%  Similarity=0.231  Sum_probs=118.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++....    .+++...|....  .++||.|++..+++
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~Ivs~~~~e  239 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEEEEeCchh
Confidence            4567999999999999998887 5789999999999999999987432    478888887654  46899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--C---------CcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--P---------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++......+++++.++|+|||++++..+........  .         ....+.+++.+.++ .||.+.++......+ 
T Consensus       240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy-  317 (383)
T PRK11705        240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADY-  317 (383)
T ss_pred             hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhH-
Confidence            9977777889999999999999999977654322110  0         11236788888766 489988877654444 


Q ss_pred             CccchhHHHHhhhhhc
Q 024021          255 PRKGREKLGRWKRSVR  270 (274)
Q Consensus       255 ~~~~~~~~~~~~~~~~  270 (274)
                          .+++..|.+.+.
T Consensus       318 ----~~TL~~W~~~f~  329 (383)
T PRK11705        318 ----DRTLMAWHENFE  329 (383)
T ss_pred             ----HHHHHHHHHHHH
Confidence                478888877653

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.70  E-value=1.1e-15  Score=128.44  Aligned_cols=159  Identities=19%  Similarity=0.300  Sum_probs=114.6

Q ss_pred             HHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus       100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      .++.... .++.+|||+|||+|.++..+++  ++.+|+|+|+++.+++.|+++.      .++.++.+|+....+.++||
T Consensus        22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD   95 (258)
T PRK01683         22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD   95 (258)
T ss_pred             HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence            3444333 3457999999999999998887  4679999999999999999875      35889999998766667999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCC--CCcccCHHHHHH
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGG--PPYKVSVSDYEE  234 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------------~~~--~~~~~~~~~~~~  234 (274)
                      +|+++.+++++++  ...+++++.++|+|||.+++........                    ..+  .....+..++.+
T Consensus        96 ~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  173 (258)
T PRK01683         96 LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD  173 (258)
T ss_pred             EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence            9999999998864  3578999999999999998864321110                    001  122346778999


Q ss_pred             HHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024021          235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      ++..+|+.+ .+...... .+....+.+..|.+.
T Consensus       174 ~l~~~g~~v-~~~~~~~~-~~~~~~~~~~~~~~~  205 (258)
T PRK01683        174 ALAPAACRV-DIWHTTYY-HPMPSAQAIVEWVKG  205 (258)
T ss_pred             HHHhCCCce-eeeeeeee-eecCCchhhhhhhhh
Confidence            999999875 44333332 222334555556553

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.70  E-value=1.4e-15  Score=127.38  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=102.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~  186 (274)
                      +..+|||+|||+|.++..++..+.+++++|+++.+++.++++..      ...++.+|+.. +.+.++||+|+++.++++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            45799999999999999998888999999999999999998753      25678899877 445668999999999987


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      .++  ...++.++.++|+|||.+++..+.....            ........+.+++.++++..|+..
T Consensus       116 ~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        116 CGN--LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             cCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence            753  4678999999999999999987665321            111122358899999999888764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.69  E-value=9e-16  Score=130.01  Aligned_cols=140  Identities=19%  Similarity=0.235  Sum_probs=109.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   ...+|+++|+++.+++.|+++....+. ++++++.+|+.+ ..+.+.||+|+++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            4568999999999998876655   335899999999999999998876654 478999999987 34456899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------GPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++++.++  ...+++++.++|+|||++++..+.......            ......+.+++.++++++||..+.+...
T Consensus       155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~  231 (272)
T PRK11873        155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK  231 (272)
T ss_pred             cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence            9987753  357899999999999999997654332110            0011246789999999999999887553

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=6.3e-16  Score=133.05  Aligned_cols=137  Identities=15%  Similarity=0.090  Sum_probs=107.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ++.+|||+|||+|..+..+++  .+.+++++|+++++++.|+++...    .+++++.+|+.+ ..+.+.||+|+++.++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            457999999999999888876  457999999999999999987642    358899999987 3456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----CC-CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----GG-PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++.  ..+++++.++|+|||.+++.........     .. .....+.+++.++++++||+.+++....
T Consensus       189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~  258 (340)
T PLN02490        189 EYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG  258 (340)
T ss_pred             hhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence            988654  4689999999999999987653221110     00 0112478999999999999999887643

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.68  E-value=7.2e-16  Score=122.25  Aligned_cols=128  Identities=17%  Similarity=0.217  Sum_probs=99.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..++.  ++.+|+++|.++.+++.++++....+. ++++++.+|+.+....++||+|++.. +
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~-~  118 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA-L  118 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh-h
Confidence            4478999999999999988765  456899999999999999998877765 46999999998865567899999876 3


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeecccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP---MGFQAISIVDNKLA  252 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~Gf~~~~~~~~~~~  252 (274)
                      ++     ...+++.+.++|+|||.+++....        .   ...++..+.+.   .||+.++......+
T Consensus       119 ~~-----~~~~~~~~~~~LkpgG~lvi~~~~--------~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       119 AS-----LNVLLELTLNLLKVGGYFLAYKGK--------K---YLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             hC-----HHHHHHHHHHhcCCCCEEEEEcCC--------C---cHHHHHHHHHhhhhcCceEeeccccCCC
Confidence            32     245778889999999999987521        1   34444444444   79999888776655

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.66  E-value=3e-16  Score=112.79  Aligned_cols=94  Identities=30%  Similarity=0.357  Sum_probs=79.1

Q ss_pred             EEEEcCCcchhHHHhhCC---C--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-ccc
Q 024021          112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF  184 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~---~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~-~~~  184 (274)
                      |||+|||+|..+..+++.   +  .+++++|+++++++.++++....+.  +++++++|+.+ ....++||+|++. .++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~   78 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL   78 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence            799999999999988863   3  7999999999999999999876553  69999999988 3345699999995 459


Q ss_pred             cccChhHHHHHHHHHHhcccCCc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDG  207 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG  207 (274)
                      +|++++....+++++.++|+|||
T Consensus        79 ~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   79 HHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999998

>PRK14968 putative methyltransferase; Provisional

Probab=99.65  E-value=7.4e-15  Score=117.43  Aligned_cols=135  Identities=23%  Similarity=0.358  Sum_probs=107.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++++++.++++....+..++ +.++.+|+.+..+.++||+|+++..+.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            4567999999999999999988888999999999999999999877665433 889999988865566899999887654


Q ss_pred             ccC-------------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~-------------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ...                   ......+++++.++|+|||.+++.....          ...+++.++++++||++..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------TGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------CCHHHHHHHHHHCCCeeeee
Confidence            311                   1234678999999999999988876322          24678999999999998776


Q ss_pred             eeccc
Q 024021          247 VDNKL  251 (274)
Q Consensus       247 ~~~~~  251 (274)
                      .....
T Consensus       172 ~~~~~  176 (188)
T PRK14968        172 AEEKF  176 (188)
T ss_pred             eeccc
Confidence            65433

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.65  E-value=5.4e-15  Score=119.47  Aligned_cols=101  Identities=17%  Similarity=0.302  Sum_probs=86.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+|+++++.|+++.      .++.+..+|+.++.+.++||+|+++.++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~~~sfD~V~~~~vL  115 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFKDNFFDLVLTKGVL  115 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCCCCCEEEEEECChh
Confidence            3457999999999999999877  3679999999999999999875      2467888998886667899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +|++++....+++++.+++  ++.+++.++.
T Consensus       116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~  144 (204)
T TIGR03587       116 IHINPDNLPTAYRELYRCS--NRYILIAEYY  144 (204)
T ss_pred             hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence            9998888889999999987  4677776653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.65  E-value=4.6e-15  Score=118.70  Aligned_cols=126  Identities=17%  Similarity=0.113  Sum_probs=99.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .+++++.+|..... .++||+|++....
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~  107 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG  107 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence            3567999999999999998876  456999999999999999998876654 46899999875433 3579999987665


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      .++     ..+++.+.+.|+|||++++.....          .+..++.++++++||..+.+...
T Consensus       108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~----------~~~~~~~~~l~~~g~~~~~~~~~  157 (187)
T PRK08287        108 GNL-----TAIIDWSLAHLHPGGRLVLTFILL----------ENLHSALAHLEKCGVSELDCVQL  157 (187)
T ss_pred             cCH-----HHHHHHHHHhcCCCeEEEEEEecH----------hhHHHHHHHHHHCCCCcceEEEE
Confidence            433     467889999999999998865322          15678899999999987776443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.64  E-value=3e-15  Score=124.23  Aligned_cols=141  Identities=22%  Similarity=0.278  Sum_probs=111.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..++..   ..+++++|+++.+++.++++....+...++++..+|+.+. .+.+.||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            4579999999999999988773   3799999999999999999987654446799999999873 34568999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------CC-C----------CcccCHHH
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------GG-P----------PYKVSVSD  231 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------------------~~-~----------~~~~~~~~  231 (274)
                      ++++++  ...+++.+.++|+|||.+++.++......                     .+ .          ...++.++
T Consensus       131 l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (239)
T PRK00216        131 LRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE  208 (239)
T ss_pred             cccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence            888753  46789999999999999988765443211                     00 0          11236788


Q ss_pred             HHHHHhcCCCcEEEEeecc
Q 024021          232 YEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +.++++++||+.+.+....
T Consensus       209 ~~~~l~~aGf~~~~~~~~~  227 (239)
T PRK00216        209 LAAMLEEAGFERVRYRNLT  227 (239)
T ss_pred             HHHHHHhCCCceeeeeeee
Confidence            9999999999998887643

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.64  E-value=6.4e-15  Score=120.19  Aligned_cols=135  Identities=24%  Similarity=0.274  Sum_probs=113.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEeccc
Q 024021          109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~  183 (274)
                      ..+|||+|||+|..++.++.+  .+++++||+.+++.+.|++++..+++..+++++++|+.+.   ....+||+|+|+..
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP  124 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP  124 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence            689999999999999999884  4799999999999999999999999999999999999873   23346999999998


Q ss_pred             ccccChh----------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~----------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +......                ....+++...++|||||.+.++....           ...++.++++..+|....+.
T Consensus       125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------rl~ei~~~l~~~~~~~k~i~  193 (248)
T COG4123         125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------RLAEIIELLKSYNLEPKRIQ  193 (248)
T ss_pred             CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------HHHHHHHHHHhcCCCceEEE
Confidence            8664322                13689999999999999999987333           56788999999999998887


Q ss_pred             ecccccC
Q 024021          248 DNKLAIG  254 (274)
Q Consensus       248 ~~~~~~~  254 (274)
                      .+.....
T Consensus       194 ~V~p~~~  200 (248)
T COG4123         194 FVYPKIG  200 (248)
T ss_pred             EecCCCC
Confidence            7554443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.64  E-value=4.8e-15  Score=135.13  Aligned_cols=137  Identities=20%  Similarity=0.184  Sum_probs=109.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~~  184 (274)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++.....   .++++++.+|+..   ..+.++||+|++..++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            457999999999999999998888999999999999988664322   2578999999864   3456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ++++++....++.++.++|+|||++++.+......     ...+........+.+++.++||......
T Consensus       114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  181 (475)
T PLN02336        114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN  181 (475)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence            99988778899999999999999999876543221     1133444468899999999998876543

>PRK14967 putative methyltransferase; Provisional

Probab=99.63  E-value=2.1e-14  Score=118.01  Aligned_cols=147  Identities=20%  Similarity=0.233  Sum_probs=110.8

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      .+...+... ..++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+.  +++++.+|+.+..+.++
T Consensus        24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~  101 (223)
T PRK14967         24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP  101 (223)
T ss_pred             HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence            344444433 23457999999999999998888665 999999999999999998876653  58889999887656678


Q ss_pred             eeEEEecccccccCh-------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021          175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ||+|+++..+..-+.                   .....+++++.++|+|||++++......          ...++.+.
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~----------~~~~~~~~  171 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS----------GVERTLTR  171 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc----------CHHHHHHH
Confidence            999999865432211                   1245678899999999999988653221          45688899


Q ss_pred             HhcCCCcEEEEeecccccCC
Q 024021          236 LQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       236 l~~~Gf~~~~~~~~~~~~~~  255 (274)
                      ++..||..........++.+
T Consensus       172 l~~~g~~~~~~~~~~~~~~~  191 (223)
T PRK14967        172 LSEAGLDAEVVASQWIPFGP  191 (223)
T ss_pred             HHHCCCCeEEEEeeccCccH
Confidence            99999988777776666543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=4.2e-15  Score=124.34  Aligned_cols=137  Identities=22%  Similarity=0.244  Sum_probs=105.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      ..++++....++.+|||+|||+|.+++..++.|+ +++|+|++|.+++.|+.|+..++....++....+.......++||
T Consensus       152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D  231 (300)
T COG2264         152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD  231 (300)
T ss_pred             HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence            4455566667889999999999999999999888 699999999999999999998876532333333333333346899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +|+++-.-+     ....+...+.+.++|||++++.-.-..          ..+.+.+.++.+||.++.+...
T Consensus       232 vIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~----------q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         232 VIVANILAE-----VLVELAPDIKRLLKPGGRLILSGILED----------QAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             EEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehHh----------HHHHHHHHHHhCCCeEeEEEec
Confidence            999876432     335788999999999999998653221          4678888998999999887654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.63  E-value=7.1e-15  Score=122.82  Aligned_cols=121  Identities=23%  Similarity=0.281  Sum_probs=95.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...++...++.+..+|.       +||+|+++...
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~  189 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA  189 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence            45678999999999999998888766 59999999999999999988776544454444332       69999986542


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                           +....++..+.++|+|||.+++......          ..+++.+.++..||.++....
T Consensus       190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~~----------~~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        190 -----NPLLELAPDLARLLKPGGRLILSGILEE----------QADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             -----HHHHHHHHHHHHhcCCCcEEEEEECcHh----------hHHHHHHHHHHCCCEEEEEEE
Confidence                 2345778999999999999999764321          567899999999999987655

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.63  E-value=9.2e-15  Score=121.26  Aligned_cols=136  Identities=22%  Similarity=0.262  Sum_probs=106.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      .+.+|||+|||+|.++..+++.  ..+++++|+++.++..++++..     +++.++.+|+.+ +.+.++||+|++..++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence            3479999999999999988874  4578999999999999988764     358899999987 3456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC--------CCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV--------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      +++++  ...++..+.++|+|||.+++..+......        .+. ...+.+++.++++.+ |..+.+......
T Consensus       109 ~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-f~~~~~~~~~~~  180 (240)
T TIGR02072       109 QWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGL-RYLSLDELKALLKNS-FELLTLEEELIT  180 (240)
T ss_pred             hhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhcc-CCCCHHHHHHHHHHh-cCCcEEEEEEEE
Confidence            98853  46789999999999999999876543210        111 224778899999998 887776554443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK08317 hypothetical protein; Provisional

Probab=99.63  E-value=2.6e-14  Score=118.51  Aligned_cols=146  Identities=24%  Similarity=0.292  Sum_probs=110.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|.++..+++   ++.+++++|+++.+++.++++....  ..++++..+|+.. ..+.++||+|++..
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~   95 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR   95 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence            4457999999999999998876   3469999999999999999883322  2578999999876 44557899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----C-------------CCCcccCHHHHHHHHhcCCCcEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----G-------------GPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +++++.+  ...+++++.++|+|||.+++.........    .             .........++.++++++||..+.
T Consensus        96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  173 (241)
T PRK08317         96 VLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE  173 (241)
T ss_pred             hhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence            9998854  46789999999999999998774321100    0             000112456899999999999988


Q ss_pred             EeecccccCCc
Q 024021          246 IVDNKLAIGPR  256 (274)
Q Consensus       246 ~~~~~~~~~~~  256 (274)
                      +..........
T Consensus       174 ~~~~~~~~~~~  184 (241)
T PRK08317        174 VEPYTLIETDL  184 (241)
T ss_pred             EEEEEEeccCc
Confidence            87766554443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.62  E-value=2.3e-14  Score=119.89  Aligned_cols=140  Identities=24%  Similarity=0.295  Sum_probs=107.4

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      .+..++......+.+|||+|||+|..+..++.  ++.+++++|+++.+++.++++....+.. +++++.+|+.+..+.++
T Consensus        76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~  154 (251)
T TIGR03534        76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGK  154 (251)
T ss_pred             HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCc
Confidence            33444444333456999999999999999987  4679999999999999999998776653 69999999988666678


Q ss_pred             eeEEEeccccccc------Chh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021          175 FDLIFDYTFFCAI------EPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       175 ~D~v~~~~~~~~~------~~~------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      ||+|+++.++...      ...                  ....+++.+.++|+|||.+++....           ...+
T Consensus       155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------~~~~  223 (251)
T TIGR03534       155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------DQGE  223 (251)
T ss_pred             eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------cHHH
Confidence            9999998765431      111                  1246789999999999998886411           1467


Q ss_pred             HHHHHHhcCCCcEEEEee
Q 024021          231 DYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++.++++++||..+.+..
T Consensus       224 ~~~~~l~~~gf~~v~~~~  241 (251)
T TIGR03534       224 AVRALFEAAGFADVETRK  241 (251)
T ss_pred             HHHHHHHhCCCCceEEEe
Confidence            899999999998877644

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.62  E-value=7.9e-15  Score=115.41  Aligned_cols=106  Identities=26%  Similarity=0.407  Sum_probs=88.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++.+.  +|+++|+++.+++.++++...++..+ ++++..|+.+..+.++||+|+++.+++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence            568999999999999999988443  69999999999999999999988765 999999999877778999999998876


Q ss_pred             ccCh---hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          186 AIEP---EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       186 ~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .-..   .....+++...++|+|||.++++..
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            5443   3467889999999999999977653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.62  E-value=1.4e-14  Score=123.49  Aligned_cols=132  Identities=16%  Similarity=0.149  Sum_probs=102.6

Q ss_pred             HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEE
Q 024021          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI  178 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v  178 (274)
                      .++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...++...++.+...+... ...++||+|
T Consensus       151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-~~~~~fDlV  229 (288)
T TIGR00406       151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-PIEGKADVI  229 (288)
T ss_pred             HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-ccCCCceEE
Confidence            33444455678999999999999988887665 8999999999999999999888776667777776433 235689999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++....     ....++..+.++|+|||.+++......          ..+++.+.++.. |.++.+..
T Consensus       230 van~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~~----------~~~~v~~~~~~~-f~~~~~~~  283 (288)
T TIGR00406       230 VANILAE-----VIKELYPQFSRLVKPGGWLILSGILET----------QAQSVCDAYEQG-FTVVEIRQ  283 (288)
T ss_pred             EEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcHh----------HHHHHHHHHHcc-CceeeEec
Confidence            9876533     345788999999999999998764321          467888888876 98877654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.62  E-value=1.1e-14  Score=120.52  Aligned_cols=139  Identities=18%  Similarity=0.197  Sum_probs=108.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.++..++++....+.  .+++...|+.+..  ..++||+|++..+
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            34567999999999999999988888999999999999999988765543  4778888876632  4578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CC--CCCcccCHHHHHHHHhcCCCcEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VG--GPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      +++.++  ...+++.+.++|+|||.+++........                 ..  .....++.+++.++++.+||.++
T Consensus       124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v  201 (233)
T PRK05134        124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ  201 (233)
T ss_pred             hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence            998854  3578899999999999999876532110                 00  01123578899999999999998


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ....
T Consensus       202 ~~~~  205 (233)
T PRK05134        202 DITG  205 (233)
T ss_pred             eeee
Confidence            7754

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.61  E-value=5.1e-15  Score=125.03  Aligned_cols=132  Identities=23%  Similarity=0.253  Sum_probs=101.3

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      ..+++.....++.+|||+|||+|.+++..++.|+ +|+++|++|.+++.|++|+..++...++.+.   ........+||
T Consensus       151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~d  227 (295)
T PF06325_consen  151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFD  227 (295)
T ss_dssp             HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EE
T ss_pred             HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCC
Confidence            4455555567788999999999999999999888 7999999999999999999999987766553   12223348899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +|+++-...     .+..++..+.++|+|||++++.-.-..          ..+++.+.+++ ||.++....
T Consensus       228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~~----------~~~~v~~a~~~-g~~~~~~~~  283 (295)
T PF06325_consen  228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGILEE----------QEDEVIEAYKQ-GFELVEERE  283 (295)
T ss_dssp             EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEGG----------GHHHHHHHHHT-TEEEEEEEE
T ss_pred             EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccHH----------HHHHHHHHHHC-CCEEEEEEE
Confidence            999876654     335677889999999999998654332          57888889977 999987655

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN03075 nicotianamine synthase; Provisional

Probab=99.61  E-value=1.2e-14  Score=121.99  Aligned_cols=137  Identities=16%  Similarity=0.135  Sum_probs=103.5

Q ss_pred             cchhHhhhcCCCCccCCCccHHHHHHHhcC-----------CCCCCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCCh
Q 024021           76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-----------ALPKGRALVPGCGTGYDV-VAMAS---PERYVVGLEISD  140 (274)
Q Consensus        76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vLDiG~G~G~~~-~~l~~---~~~~v~~vD~~~  140 (274)
                      .+|.........+|......++...+++..           ..++.+|+|||||.|..+ ..++.   ++.+++++|.++
T Consensus        80 ~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~  159 (296)
T PLN03075         80 AHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP  159 (296)
T ss_pred             HHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence            455555555556666555544444443321           225689999999977543 33332   667999999999


Q ss_pred             HHHHHHHHHhhc-CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          141 IAIKKAEELSSS-LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       141 ~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++++.|++.+.. .++.++++|..+|+.+.. ..++||+|++. ++.+++.+....+++++.+.|+|||.+++-.
T Consensus       160 ~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        160 SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            999999999954 667788999999998854 34689999999 8888876677899999999999999999876

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.60  E-value=7.8e-17  Score=115.39  Aligned_cols=95  Identities=33%  Similarity=0.478  Sum_probs=62.2

Q ss_pred             EEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      ||+|||+|..+..+++  +..+++++|+|+.+++.++++........  .+++...+..+....++||+|++..+++|+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            7999999999998877  47799999999999998888887654321  233333333333334689999999999999 


Q ss_pred             hhHHHHHHHHHHhcccCCcEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~  209 (274)
                       ++...+++.++++|+|||+|
T Consensus        80 -~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 -EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hhHHHHHHHHHHHcCCCCCC
Confidence             45678999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.60  E-value=7.6e-15  Score=118.70  Aligned_cols=126  Identities=21%  Similarity=0.100  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCC---CCCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~---~~~~~~D~v~~~  181 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .++.++.+|+ ...   .+.++||+|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            567999999999999998876  456899999999999999998877655 5699999998 432   446789999987


Q ss_pred             ccccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          182 TFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       182 ~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ....+...      .....+++.+.++|+|||.+++.....          .-..++.+.+++.|+.+.
T Consensus       119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------~~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE----------GYAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH----------HHHHHHHHHHHhCccccc
Confidence            54332110      013578999999999999999876322          135688899999998765

>PRK06202 hypothetical protein; Provisional

Probab=99.60  E-value=1.5e-14  Score=119.66  Aligned_cols=138  Identities=14%  Similarity=0.076  Sum_probs=100.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..+++      .+.+++|+|+++.+++.|+++....    ++++...+... ..++++||+|+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~  134 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT  134 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence            3457999999999999887764      2359999999999999999876433    35555555443 22457899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCC---CCcccCHHHHHHHHh
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGG---PPYKVSVSDYEEVLQ  237 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------------~~~---~~~~~~~~~~~~~l~  237 (274)
                      ++.+++|++++....+++++.++++  |.+++.++.....                   ..+   ....++.+++.++++
T Consensus       135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~  212 (232)
T PRK06202        135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP  212 (232)
T ss_pred             ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence            9999999987777789999999998  5555544432210                   001   112368999999999


Q ss_pred             cCCCcEEEEeeccc
Q 024021          238 PMGFQAISIVDNKL  251 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~  251 (274)
                      + ||++........
T Consensus       213 ~-Gf~~~~~~~~~~  225 (232)
T PRK06202        213 Q-GWRVERQWPFRY  225 (232)
T ss_pred             C-CCeEEeccceee
Confidence            9 999877655443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.60  E-value=3.1e-14  Score=117.12  Aligned_cols=138  Identities=18%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~  185 (274)
                      .+.+|||+|||+|.++..+++.+..++++|+++.+++.++++....+. .++++...|+.+...  .++||+|++..+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            467999999999999998888778899999999999999998766543 258888888876322  36899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CCC--CCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VGG--PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ++.+  ...+++.+.++|+|||.+++........                 ..+  ....++.+++.++++++||+++.+
T Consensus       124 ~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~  201 (224)
T TIGR01983       124 HVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV  201 (224)
T ss_pred             hCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence            8853  3578999999999999988876432210                 001  112347889999999999999887


Q ss_pred             ee
Q 024021          247 VD  248 (274)
Q Consensus       247 ~~  248 (274)
                      ..
T Consensus       202 ~~  203 (224)
T TIGR01983       202 KG  203 (224)
T ss_pred             ee
Confidence            64

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.59  E-value=4.3e-14  Score=119.97  Aligned_cols=129  Identities=23%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+.
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            346999999999999999987  467999999999999999999988877678999999998755556899999986542


Q ss_pred             c------cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021          186 A------IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       186 ~------~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      .      +++                 +....++..+.++|+|||++++...            .+.+.+.+++..+||.
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------~~~~~v~~~~~~~~~~  268 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------NSMEALEEAYPDVPFT  268 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHHhCCCc
Confidence            2      111                 1235778899999999999887551            1456899999999987


Q ss_pred             EEEEee
Q 024021          243 AISIVD  248 (274)
Q Consensus       243 ~~~~~~  248 (274)
                      -.....
T Consensus       269 ~~~~~~  274 (284)
T TIGR03533       269 WLEFEN  274 (284)
T ss_pred             eeeecC
Confidence            754433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.58  E-value=4.8e-14  Score=115.73  Aligned_cols=138  Identities=20%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++..   ...++++..+|+.+. .+.++||+|+++.+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence            56899999999999999888733   489999999999999998875   225689999999873 34568999999998


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------CC--C-------CcccCHHH
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------GG--P-------PYKVSVSD  231 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------------------~~--~-------~~~~~~~~  231 (274)
                      +++.+  ....+++.+.+.|+|||++++.++......                       ..  .       ....+.++
T Consensus       116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (223)
T TIGR01934       116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE  193 (223)
T ss_pred             eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence            88775  356789999999999999998775432210                       00  0       01236788


Q ss_pred             HHHHHhcCCCcEEEEeecc
Q 024021          232 YEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +.++++++||+.+.+....
T Consensus       194 ~~~~l~~aGf~~~~~~~~~  212 (223)
T TIGR01934       194 LAAMLKEAGFEEVRYRSLT  212 (223)
T ss_pred             HHHHHHHcCCccceeeeee
Confidence            9999999999988877644

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK04266 fibrillarin; Provisional

Probab=99.58  E-value=6.6e-14  Score=114.59  Aligned_cols=134  Identities=20%  Similarity=0.226  Sum_probs=95.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~  180 (274)
                      .++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.+.++....   .++.++.+|...+    ...++||+|++
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence            45679999999999999999873  358999999999999877766543   4689999998752    11356999995


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ...    .+.....+++.+.++|||||.+++..... .+.... +... .++..++++++||+.++..+.
T Consensus       148 d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~-~~~~-~~~~~~~l~~aGF~~i~~~~l  211 (226)
T PRK04266        148 DVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD-PKEI-FKEEIRKLEEGGFEILEVVDL  211 (226)
T ss_pred             CCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCC-HHHH-HHHHHHHHHHcCCeEEEEEcC
Confidence            422    12233456899999999999999843221 111111 1111 244569999999999988774

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=1.5e-14  Score=106.67  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~  184 (274)
                      +.+|||+|||+|.++..+++.+ .+++++|+++.+++.++.++...+...+++++.+|+.+.   .+.++||+|+++..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            3589999999999999998877 899999999999999999999988778899999999873   467899999999888


Q ss_pred             cccCh------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEP------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .....      .....+++++.++|+|||.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            75321      234688999999999999998865

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.57  E-value=1.1e-13  Score=111.70  Aligned_cols=123  Identities=19%  Similarity=0.171  Sum_probs=96.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~  180 (274)
                      ..++.+|||+|||+|.++..+++   .+.+|+++|+++.+++.+++++...+..+++.++.+|..+..  ..+.||.|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            34568999999999999988765   346999999999999999999887765568999999987632  2367999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ....     .....+++.+.+.|+|||++++.....          -+..+..+.++++||..
T Consensus       118 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~~g~~~  165 (198)
T PRK00377        118 GGGS-----EKLKEIISASWEIIKKGGRIVIDAILL----------ETVNNALSALENIGFNL  165 (198)
T ss_pred             CCCc-----ccHHHHHHHHHHHcCCCcEEEEEeecH----------HHHHHHHHHHHHcCCCe
Confidence            5422     234578899999999999998744211          14678889999999954

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.57  E-value=7.1e-14  Score=111.19  Aligned_cols=139  Identities=19%  Similarity=0.215  Sum_probs=102.9

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~~~~  187 (274)
                      .+.||+|||.|..+..++.+-+ +|-.+|..+..++.|++...... ....++++..+.++.|. .+||+||+.+++.|+
T Consensus        57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL  135 (218)
T PF05891_consen   57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL  135 (218)
T ss_dssp             SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred             ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence            6999999999999998876545 89999999999999998765521 13467888888886664 689999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      .++++..++.++...|+|+|.|++-+......     ....+..-+.+.+.++++++|++++..+..
T Consensus       136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  136 TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             -HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred             CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence            99999999999999999999999965433221     111233457899999999999999887653

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.57  E-value=9.1e-14  Score=121.42  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..+|||+|||+|.++..+++  ++.+|+++|.|+.+++.|++++..++..  .+++++..|..+..+..+||+|+++.++
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF  308 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence            36999999999999999887  4679999999999999999998766432  3689999998775555689999999887


Q ss_pred             ccc---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAI---EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +..   .+.....++..+.++|+|||.++++.
T Consensus       309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            653   33455688999999999999999885

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.56  E-value=3.5e-13  Score=118.04  Aligned_cols=127  Identities=23%  Similarity=0.268  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..++.  ++.+++++|+|+.+++.|+++....+  .+++++.+|+.+. . ..++||+|+++.+
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPP  328 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPP  328 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCC
Confidence            456999999999999998875  57799999999999999999987765  3799999999763 2 2457999999886


Q ss_pred             ccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          184 FCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       184 ~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      +..-.+                       +....+++.+.+.|+|||.+++... .          ...+.+.+++++.|
T Consensus       329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~----------~Q~e~V~~ll~~~G  397 (423)
T PRK14966        329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F----------DQGAAVRGVLAENG  397 (423)
T ss_pred             CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c----------cHHHHHHHHHHHCC
Confidence            532110                       1234677788899999999876541 1          14788999999999


Q ss_pred             CcEEEEe
Q 024021          241 FQAISIV  247 (274)
Q Consensus       241 f~~~~~~  247 (274)
                      |..+.+.
T Consensus       398 f~~v~v~  404 (423)
T PRK14966        398 FSGVETL  404 (423)
T ss_pred             CcEEEEE
Confidence            9876663

>PRK05785 hypothetical protein; Provisional

Probab=99.55  E-value=4.5e-14  Score=116.05  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=74.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||||..+..+++. +.+|+|+|+|++|++.|++..         .++++|+.+ +.++++||+|++..+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~  121 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH  121 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence            4679999999999999999886 679999999999999998642         346788877 45678999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pg  206 (274)
                      ++++  ...+++++.++|+|.
T Consensus       122 ~~~d--~~~~l~e~~RvLkp~  140 (226)
T PRK05785        122 ASDN--IEKVIAEFTRVSRKQ  140 (226)
T ss_pred             ccCC--HHHHHHHHHHHhcCc
Confidence            8853  467999999999994

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.55  E-value=1.4e-14  Score=121.63  Aligned_cols=105  Identities=24%  Similarity=0.323  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCcchh----HHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcC------------------------
Q 024021          109 KGRALVPGCGTGYD----VVAMAS-------PERYVVGLEISDIAIKKAEELSSSL------------------------  153 (274)
Q Consensus       109 ~~~vLDiG~G~G~~----~~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~~------------------------  153 (274)
                      +.+|+|+|||+|..    ++.+++       .+.+|+|+|+|+.+++.|++.....                        
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v  179 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV  179 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence            46999999999974    444433       1468999999999999999864210                        


Q ss_pred             --CCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          154 --PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       154 --~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                        ....+++|...|+.+.. +.++||+|+|.++++|++++....++++++++|+|||++++..
T Consensus       180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence              01246899999999844 4678999999999999988888899999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=1.4e-13  Score=117.91  Aligned_cols=127  Identities=23%  Similarity=0.267  Sum_probs=100.2

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~-  186 (274)
                      .+|||+|||+|..+..++.  ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++.++.. 
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999886  4679999999999999999999887766789999999987555568999999865421 


Q ss_pred             -----cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          187 -----IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       187 -----~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                           +++                 +....++..+.++|+|||.+++... .           +.+++.+++...||.-.
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-~-----------~~~~~~~~~~~~~~~~~  282 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-N-----------SRVHLEEAYPDVPFTWL  282 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-c-----------CHHHHHHHHhhCCCEEE
Confidence                 110                 2235778999999999999988541 1           34568888888887665


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ....
T Consensus       283 ~~~~  286 (307)
T PRK11805        283 EFEN  286 (307)
T ss_pred             EecC
Confidence            5443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.55  E-value=1e-13  Score=120.34  Aligned_cols=127  Identities=16%  Similarity=0.106  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..++..+..++|+|+++.++..++.++...+..+ +++..+|+.+. .+.+.||+|+++.++.
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg  259 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG  259 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence            456799999999999998888888999999999999999999988777654 88999999884 3457899999987664


Q ss_pred             cc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~-------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ..       ..+....+++.+.++|+|||++++...             +..++.++++.+|| ++....
T Consensus       260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-------------~~~~~~~~~~~~g~-i~~~~~  315 (329)
T TIGR01177       260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP-------------TRIDLESLAEDAFR-VVKRFE  315 (329)
T ss_pred             CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc-------------CCCCHHHHHhhcCc-chheee
Confidence            31       113357899999999999999888762             23366778999999 766554

This family is found exclusively in the Archaea.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.55  E-value=1.9e-13  Score=115.66  Aligned_cols=141  Identities=23%  Similarity=0.228  Sum_probs=97.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~  181 (274)
                      ...+|||+|||+|.++..+++.     +..++|+|+|+.++..|+++.      +++.+..+|+.+ +.++++||+|++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence            4478999999999999888652     247999999999999998764      458899999887 4556789999975


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-CCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      ...         ..++++.++|+|||+++++..+....      . ..+..+....     ....||+.+..+.......
T Consensus       159 ~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~-----~~~~gF~~~~~~~~~~~~~  224 (272)
T PRK11088        159 YAP---------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA-----EQLEGFELQHSERLAYPMR  224 (272)
T ss_pred             cCC---------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch-----hhccCCCeeeEEEEEEEEE
Confidence            431         23478999999999999987554311      0 0111111111     1235899888877666665


Q ss_pred             CccchhHHHHhhhhhc
Q 024021          255 PRKGREKLGRWKRSVR  270 (274)
Q Consensus       255 ~~~~~~~~~~~~~~~~  270 (274)
                      . ++.+.+. |.+..+
T Consensus       225 l-~~~~~~~-ll~mtP  238 (272)
T PRK11088        225 L-TGSEAVA-LLQMTP  238 (272)
T ss_pred             e-CHHHHHH-HHcCCc
Confidence            4 3344444 666543

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=4.2e-13  Score=113.88  Aligned_cols=128  Identities=25%  Similarity=0.315  Sum_probs=99.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..++.  +..+++++|+++.+++.++++.. .....++.++.+|+.+..+.++||+|+++..+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            3457999999999999999987  45799999999999999999987 22335799999999875556789999998665


Q ss_pred             cccC------h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          185 CAIE------P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       185 ~~~~------~------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      ....      +                  +....+++.+.++|+|||.+++...        .   ...+++.++++..|
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g--------~---~~~~~~~~~l~~~g  254 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG--------Y---DQGEAVRALLAAAG  254 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC--------c---hHHHHHHHHHHhCC
Confidence            3211      1                  1235678888899999999988541        1   13567999999999


Q ss_pred             CcEEEE
Q 024021          241 FQAISI  246 (274)
Q Consensus       241 f~~~~~  246 (274)
                      |..+.+
T Consensus       255 f~~v~~  260 (275)
T PRK09328        255 FADVET  260 (275)
T ss_pred             CceeEE
Confidence            986655

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=8.5e-14  Score=112.70  Aligned_cols=125  Identities=26%  Similarity=0.274  Sum_probs=104.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ..++.+|||.|+|+|.++.+|+.   +..+|+.+|+.++.++.|++|+...++.+++++..+|+.+....+.||.|+   
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~---  168 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF---  168 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence            45678999999999999999986   446999999999999999999999888888999999999966666999999   


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                          ++-++...++++++++|+|||.+++.....          -..+...+.|++.||..++..
T Consensus       169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v----------eQv~kt~~~l~~~g~~~ie~~  219 (256)
T COG2519         169 ----LDLPDPWNVLEHVSDALKPGGVVVVYSPTV----------EQVEKTVEALRERGFVDIEAV  219 (256)
T ss_pred             ----EcCCChHHHHHHHHHHhCCCcEEEEEcCCH----------HHHHHHHHHHHhcCccchhhh
Confidence                333455789999999999999998876322          245667777888898876653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.54  E-value=1.1e-13  Score=112.15  Aligned_cols=99  Identities=22%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++++++.|++++...+..++++++.+|..+. ....+||+|++..
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  150 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA  150 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence            3557999999999999988776   24699999999999999999988777666799999999873 3346899999998


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++.+++        +.+.+.|+|||++++..
T Consensus       151 ~~~~~~--------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        151 AASTIP--------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             Ccchhh--------HHHHHhcCcCcEEEEEE
Confidence            877664        35778999999998865

>TIGR03438 probable methyltransferase

Probab=99.54  E-value=2.2e-13  Score=116.74  Aligned_cols=104  Identities=21%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCC----CeeEE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~----~~D~v  178 (274)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+|+++++.+++++.......++.++.+|+.+.  .+..    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            4579999999999999988874   6799999999999999998875432123577889999862  2221    23345


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      ++...+++++++....++++++++|+|||.+++
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            555678888888888999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.54  E-value=3.7e-13  Score=114.57  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=99.1

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|||+|||+|..+..++.  ++.+++++|+++.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+..-
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999987  45799999999999999999998777666799999999886555589999998544221


Q ss_pred             -------------Ch----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcE
Q 024021          188 -------------EP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQA  243 (274)
Q Consensus       188 -------------~~----------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~  243 (274)
                                   |.          .....++..+.++|+|||++++.....           ..+.+.+++. ..||..
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------q~~~~~~~~~~~~~~~~  264 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------QQKSLKELLRIKFTWYD  264 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------HHHHHHHHHHhcCCCce
Confidence                         10          134678899999999999988765211           3567788887 468876


Q ss_pred             EEE
Q 024021          244 ISI  246 (274)
Q Consensus       244 ~~~  246 (274)
                      +.+
T Consensus       265 ~~~  267 (284)
T TIGR00536       265 VEN  267 (284)
T ss_pred             eEE
Confidence            655

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK06922 hypothetical protein; Provisional

Probab=99.53  E-value=8.3e-14  Score=127.25  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+++|+|+++.+++.|+++....+  .++.++.+|..+.   .++++||+|+++
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            3578999999999999888875  67899999999999999998875543  4588898998763   456789999999


Q ss_pred             ccccccC-----------hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIE-----------PEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~-----------~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+++++.           ......+++++.++|+|||.+++.+.
T Consensus       495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            8887642           34667899999999999999999874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=1.8e-13  Score=124.82  Aligned_cols=127  Identities=20%  Similarity=0.296  Sum_probs=100.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      +.+|||+|||+|.++..++.  ++.+++++|+|+.+++.|+++....+..++++++.+|+.+..+.++||+|+++..+..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            35899999999999998875  5779999999999999999999877776789999999877555568999999865432


Q ss_pred             cCh------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021          187 IEP------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       187 ~~~------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      ...                        +....+++.+.++|+|||.+++.. +.          ...+.+.++++..||.
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~----------~q~~~v~~~~~~~g~~  287 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF----------KQEEAVTQIFLDHGYN  287 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC----------chHHHHHHHHHhcCCC
Confidence            110                        123457788889999999988754 11          1467888999999998


Q ss_pred             EEEE
Q 024021          243 AISI  246 (274)
Q Consensus       243 ~~~~  246 (274)
                      .+.+
T Consensus       288 ~~~~  291 (506)
T PRK01544        288 IESV  291 (506)
T ss_pred             ceEE
Confidence            7655

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.53  E-value=5.7e-13  Score=103.41  Aligned_cols=124  Identities=21%  Similarity=0.241  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~  182 (274)
                      ..++.+++|+|||||..+..++  .+..+++++|.++++++..++|....+ .+|+.++.+|.-+..++. ++|.|+..+
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            5667899999999999999888  477899999999999999999999988 578999999998854433 699999877


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC-cEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF-QAISI  246 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf-~~~~~  246 (274)
                      . ..+     ..+++.+...|+|||++++..-...          +.....+++++.|+ +++++
T Consensus       111 g-~~i-----~~ile~~~~~l~~ggrlV~naitlE----------~~~~a~~~~~~~g~~ei~~v  159 (187)
T COG2242         111 G-GNI-----EEILEAAWERLKPGGRLVANAITLE----------TLAKALEALEQLGGREIVQV  159 (187)
T ss_pred             C-CCH-----HHHHHHHHHHcCcCCeEEEEeecHH----------HHHHHHHHHHHcCCceEEEE
Confidence            7 433     5789999999999999998764332          56788899999999 55544

>PHA03411 putative methyltransferase; Provisional

Probab=99.53  E-value=3.8e-13  Score=111.39  Aligned_cols=140  Identities=17%  Similarity=0.218  Sum_probs=103.9

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC  170 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  170 (274)
                      +|...+..++.. .....+|||+|||+|.++..++..  +.+|+++|+++.+++.++++.      ++++++.+|+.+..
T Consensus        50 TP~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~  122 (279)
T PHA03411         50 TPEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE  122 (279)
T ss_pred             CCHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc
Confidence            344555444322 233579999999999998877663  569999999999999999875      35889999999866


Q ss_pred             CCCCeeEEEecccccccChhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc--cCHH
Q 024021          171 PTELFDLIFDYTFFCAIEPEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK--VSVS  230 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~------------------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~--~~~~  230 (274)
                      ...+||+|+++..+.+.+...                  ....+.....+|+|+|.++++- ..     .+-|+  .+++
T Consensus       123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y-ss-----~~~y~~sl~~~  196 (279)
T PHA03411        123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY-SG-----RPYYDGTMKSN  196 (279)
T ss_pred             ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-ec-----cccccccCCHH
Confidence            567899999999988764422                  1356677788999999766652 22     11222  5799


Q ss_pred             HHHHHHhcCCCcEEE
Q 024021          231 DYEEVLQPMGFQAIS  245 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~  245 (274)
                      ++.++++++||..-.
T Consensus       197 ~y~~~l~~~g~~~~~  211 (279)
T PHA03411        197 KYLKWSKQTGLVTYA  211 (279)
T ss_pred             HHHHHHHhcCcEecC
Confidence            999999999998743

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.53  E-value=1.9e-13  Score=101.59  Aligned_cols=100  Identities=17%  Similarity=0.108  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++.+++.++++....+. .+++++.+|+...  ...++||+|++...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence            357999999999999999987  356999999999999999998876654 3689998887642  22358999998765


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     ....+++.+.+.|+|||.+++..
T Consensus        98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        98 GG-----LLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence            43     33578999999999999998865

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.51  E-value=3.6e-13  Score=106.05  Aligned_cols=128  Identities=16%  Similarity=0.207  Sum_probs=99.6

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~  186 (274)
                      +.-|||||||+|..+..+...|..++|+|+|+.|++.|.+.--+      -.++.+|+-.  ++.+++||.+|+..++++
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW  124 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW  124 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence            46899999999999999999999999999999999999974311      3578888877  667889999999877665


Q ss_pred             c---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       187 ~---------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +         |..-+..++..++.+|++|++.++-.++..+.        ..+-+.+....+||.---+.+++
T Consensus       125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--------q~d~i~~~a~~aGF~GGlvVd~P  189 (270)
T KOG1541|consen  125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--------QIDMIMQQAMKAGFGGGLVVDWP  189 (270)
T ss_pred             ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--------HHHHHHHHHHhhccCCceeeecc
Confidence            4         22334567888999999999999988766433        45666677777787755555443

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.50  E-value=4.3e-13  Score=104.80  Aligned_cols=135  Identities=17%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||.|.++..|.+ .+...+|+|++++.+..+..+-        +.++++|+.+   ..++++||.|+.+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehH
Confidence            34578999999999999999987 7889999999999988887664        7789999987   4678899999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-----------------CC-----CCCCC-cccCHHHHHHHHhc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-----------------DH-----VGGPP-YKVSVSDYEEVLQP  238 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-----------------~~-----~~~~~-~~~~~~~~~~~l~~  238 (274)
                      .+++++.  ....+++++.|+   |...++...+-.                 ..     -.+|. +..|..+++++.++
T Consensus        83 qtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~  157 (193)
T PF07021_consen   83 QTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRE  157 (193)
T ss_pred             hHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHH
Confidence            9999984  345677777665   555555432211                 11     11122 23589999999999


Q ss_pred             CCCcEEEEeeccccc
Q 024021          239 MGFQAISIVDNKLAI  253 (274)
Q Consensus       239 ~Gf~~~~~~~~~~~~  253 (274)
                      .|+++++-.......
T Consensus       158 ~~i~I~~~~~~~~~~  172 (193)
T PF07021_consen  158 LGIRIEERVFLDGGR  172 (193)
T ss_pred             CCCEEEEEEEEcCCC
Confidence            999998877755544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=8.6e-13  Score=111.50  Aligned_cols=124  Identities=26%  Similarity=0.312  Sum_probs=98.7

Q ss_pred             eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +|||+|||+|..+..++..  .++|+++|+|+.+++.|++|...+++ .++.++.+|+++.... +||+|++|..+-.-.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCc
Confidence            7999999999999999984  45999999999999999999999887 6677788898886654 899999997753221


Q ss_pred             -----h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024021          189 -----P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI  244 (274)
Q Consensus       189 -----~------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~  244 (274)
                           +                  +....++..+.+.|+|||.+++..-..           ..+.+.+++.+.| |..+
T Consensus       191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-----------q~~~v~~~~~~~~~~~~v  259 (280)
T COG2890         191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-----------QGEAVKALFEDTGFFEIV  259 (280)
T ss_pred             ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-----------cHHHHHHHHHhcCCceEE
Confidence                 1                  123678888999999999888865211           4788999999999 5544


Q ss_pred             EEe
Q 024021          245 SIV  247 (274)
Q Consensus       245 ~~~  247 (274)
                      ...
T Consensus       260 ~~~  262 (280)
T COG2890         260 ETL  262 (280)
T ss_pred             EEE
Confidence            443

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.50  E-value=1.7e-13  Score=110.14  Aligned_cols=128  Identities=20%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~  181 (274)
                      ...+|||+|||+|.++..+++  ++..++|+|+++.+++.|+++....++. +++++.+|+.+.    .+.+.+|.|+++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            346899999999999998887  5679999999999999999988777654 799999999752    345689999987


Q ss_pred             ccccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024021          182 TFFCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       182 ~~~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~  246 (274)
                      ....+.....      ...+++.+.++|+|||.+++.+....          ..+++.+.+..++ |..+..
T Consensus        95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~----------~~~~~~~~~~~~~~f~~~~~  156 (194)
T TIGR00091        95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP----------LFEDMLKVLSENDLFENTSK  156 (194)
T ss_pred             CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH----------HHHHHHHHHHhCCCeEeccc
Confidence            6533221110      14689999999999999988762221          2455667777776 776543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PTZ00146 fibrillarin; Provisional

Probab=99.50  E-value=5.4e-13  Score=111.68  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=93.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..+++.   ...|+++|+++.+...........   .++.++.+|+..+.    +.+.||+|+
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence            45679999999999999999883   358999999987654444443322   46889999986531    345799999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEeecc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~~~~  250 (274)
                      +...    .+++...++.++.++|||||.+++..... ....++    +++++    .++|+++||+.++..+..
T Consensus       208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~-~id~g~----~pe~~f~~ev~~L~~~GF~~~e~v~L~  273 (293)
T PTZ00146        208 ADVA----QPDQARIVALNAQYFLKNGGHFIISIKAN-CIDSTA----KPEVVFASEVQKLKKEGLKPKEQLTLE  273 (293)
T ss_pred             EeCC----CcchHHHHHHHHHHhccCCCEEEEEEecc-ccccCC----CHHHHHHHHHHHHHHcCCceEEEEecC
Confidence            8764    22344566778999999999999943222 222222    33333    488999999988877643

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.49  E-value=7.9e-13  Score=106.37  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|.++..+++ .+..++|+|+++++++.++..        +++++.+|+.+   ..++++||+|+++.+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            457999999999999988875 456889999999999988642        36788888865   234578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccC--------------CC--C-------CCCCCcccCHHHHHHHHhcCC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI--------------SD--H-------VGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~--------------~~--~-------~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      ++++++  ...+++++.+.+++   +++.....              ..  .       ......+.+.+++.++++++|
T Consensus        85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence            999864  35677777776553   33321110              00  0       000123468999999999999


Q ss_pred             CcEEEEeeccccc
Q 024021          241 FQAISIVDNKLAI  253 (274)
Q Consensus       241 f~~~~~~~~~~~~  253 (274)
                      |+++.........
T Consensus       160 f~v~~~~~~~~~~  172 (194)
T TIGR02081       160 LRILDRAAFDVDG  172 (194)
T ss_pred             CEEEEEEEecccc
Confidence            9999987765433

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.47  E-value=6.4e-13  Score=108.61  Aligned_cols=98  Identities=26%  Similarity=0.233  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|++++...+. ++++++.+|.... ....+||+|++..
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~  154 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVTA  154 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEcC
Confidence            45689999999999999988873   34699999999999999999988775 5799999999773 3346899999877


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....++        +.+.+.|+|||++++..
T Consensus       155 ~~~~~~--------~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       155 AGPKIP--------EALIDQLKEGGILVMPV  177 (215)
T ss_pred             Cccccc--------HHHHHhcCcCcEEEEEE
Confidence            655443        45788899999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.47  E-value=7.4e-13  Score=107.84  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++++++.++++....+. .+++++.+|... .....+||+|++..
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~  153 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTA  153 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECC
Confidence            4568999999999999988776   346999999999999999999887665 479999999877 33457899999887


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....++        ..+.+.|+|||++++..
T Consensus       154 ~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        154 AGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             Ccccch--------HHHHHhhCCCcEEEEEE
Confidence            665442        35677899999988865

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.47  E-value=1.7e-12  Score=108.36  Aligned_cols=126  Identities=17%  Similarity=0.184  Sum_probs=97.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~  184 (274)
                      .+|||+|||+|.++..+++  ++.+++++|+++.+++.|+++...++    ++++.+|+.+..+   .++||+|+++..+
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            5899999999999998876  46799999999999999999987654    5789999876432   3579999999775


Q ss_pred             cc------cChh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          185 CA------IEPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       185 ~~------~~~~------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      ..      ++++                  ....++..+.++|+|||.+++.....           ..+++.++++++|
T Consensus       164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------~~~~v~~~l~~~g  232 (251)
T TIGR03704       164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-----------QAPLAVEAFARAG  232 (251)
T ss_pred             CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-----------hHHHHHHHHHHCC
Confidence            32      1111                  13477888889999999999875221           4578999999999


Q ss_pred             CcEEEEeecc
Q 024021          241 FQAISIVDNK  250 (274)
Q Consensus       241 f~~~~~~~~~  250 (274)
                      |...-....+
T Consensus       233 ~~~~~~~~~~  242 (251)
T TIGR03704       233 LIARVASSEE  242 (251)
T ss_pred             CCceeeEccc
Confidence            9876655433

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=7.2e-13  Score=105.08  Aligned_cols=105  Identities=24%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEE
Q 024021          101 LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLI  178 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v  178 (274)
                      +++.+ ..++.+|||||||+|+.+..+++...+|+.+|..++..+.|++++...+.. |+.+.++|... +....+||.|
T Consensus        64 m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I  142 (209)
T COG2518          64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRI  142 (209)
T ss_pred             HHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEE
Confidence            33433 456689999999999999999997679999999999999999999998875 49999999988 5556899999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +.......+|        +.+.+.|++||++++...
T Consensus       143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence            9998888776        347788999999999774

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.47  E-value=1.6e-12  Score=112.92  Aligned_cols=103  Identities=19%  Similarity=0.248  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      ..+|||+|||+|.++..+++  ++.+++++|+++.+++.+++++..++..  .+++..|..+.. .++||+|+++.+++.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence            46899999999999999887  4569999999999999999998887643  567778876643 568999999999876


Q ss_pred             c---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          187 I---EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       187 ~---~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .   .......++..+.+.|+|||.++++..
T Consensus       274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            3   234567899999999999999988763

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.46  E-value=5.3e-14  Score=111.34  Aligned_cols=147  Identities=22%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             HHHHHHhcCCCC-CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC
Q 024021           97 IIVHLHQSGALP-KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT  172 (274)
Q Consensus        97 ~~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~  172 (274)
                      .+.+++...... -.++||+|||||..+..+.....+++|+|+|..|+++|.++-..      -+..++|...   ...+
T Consensus       113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~~~  186 (287)
T COG4976         113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDLTQ  186 (287)
T ss_pred             HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhccC
Confidence            355566544333 36999999999999999988777999999999999999876422      1223333332   2445


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----CCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----GGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ++||+|.+..++.++  ..+..++-.+...|+|||.+.+..-...+..     ....|..+...+..+++..||.++.++
T Consensus       187 er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         187 ERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             CcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence            789999999999988  4667888999999999999888664433321     112344688999999999999999987


Q ss_pred             eccc
Q 024021          248 DNKL  251 (274)
Q Consensus       248 ~~~~  251 (274)
                      +...
T Consensus       265 ~tti  268 (287)
T COG4976         265 DTTI  268 (287)
T ss_pred             cccc
Confidence            7443

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.46  E-value=6.4e-13  Score=110.58  Aligned_cols=100  Identities=24%  Similarity=0.330  Sum_probs=86.5

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|+|||+|+|.++..+++  ++.+++.+|. |++++.+++       .++++++.+|+++..|.  +|+|+..+++|.+
T Consensus       102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~  171 (241)
T PF00891_consen  102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW  171 (241)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred             cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence            6899999999999999887  8889999999 999999988       37899999999966655  9999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCC--cEEEEEEccCCCC
Q 024021          188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDH  219 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pg--G~~~~~~~~~~~~  219 (274)
                      +++....+|+++++.|+||  |+|++.++-..+.
T Consensus       172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence            9999999999999999999  9999988766544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.45  E-value=5.6e-13  Score=104.00  Aligned_cols=136  Identities=21%  Similarity=0.287  Sum_probs=103.6

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCCC--CCCCCeeEEEeccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTW--CPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~--~~~~~~D~v~~~~~~~  185 (274)
                      ..|||+|||||.+-.+.-- ++.+|+++|.++.|-+.+.+.+.+.. ..++. |+.++..+.  .++.+||.|++-.+++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            4789999999999877753 88899999999999999999887763 34566 999999884  4788999999999998


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------CCCCcc------cCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------GGPPYK------VSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---------~~~~~~------~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ...  +..+.+.++.++|+|||++++.++....-.         ..+.++      .=..+..+.++++.|...+...
T Consensus       157 Sve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr  232 (252)
T KOG4300|consen  157 SVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKR  232 (252)
T ss_pred             ccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhc
Confidence            774  446789999999999999999987664320         011001      0124566777777787766554

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.45  E-value=2.3e-12  Score=105.12  Aligned_cols=129  Identities=24%  Similarity=0.213  Sum_probs=93.8

Q ss_pred             chhHhhhcCCCCccCCC--ccHHHHH-HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021           77 GWEKCWEEGLTPWDIGQ--PAPIIVH-LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~--~~~~~~~-~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      ++...|.....+|..+.  ..+.+.. ++... ..++.+|||+|||+|..+..+++...+++++|+++++++.+++++..
T Consensus        43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence            34555655555554333  2333333 33333 34558999999999999988777656999999999999999999887


Q ss_pred             CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          153 LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       153 ~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+.. ++++..+|..+.. ..++||+|++...+.++        .+.+.+.|+|||.+++...
T Consensus       123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence            6653 5999999987643 34689999988766544        2457789999999988764

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.4e-12  Score=106.41  Aligned_cols=124  Identities=19%  Similarity=0.207  Sum_probs=95.6

Q ss_pred             ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024021           89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (274)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  165 (274)
                      |+......--.-+++.+.. ...+|||+|||.|.++..+++  +..+++.+|.+..+++.|+.+...++..+ ..+...|
T Consensus       138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~  216 (300)
T COG2813         138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASN  216 (300)
T ss_pred             CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEec
Confidence            4444444434444444432 245999999999999999988  55699999999999999999998887643 3778888


Q ss_pred             cCCCCCCCCeeEEEecccccccC---hhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          166 FFTWCPTELFDLIFDYTFFCAIE---PEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       166 ~~~~~~~~~~D~v~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..+.... +||+|+++..|+.--   ...-.+++....+.|++||.+.++..
T Consensus       217 ~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         217 LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            8876555 899999999998631   22335889999999999999888875

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.40  E-value=7.6e-12  Score=101.59  Aligned_cols=119  Identities=14%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|.++..+++.   +..|+++|+++.         ..  . .+++++++|+.+.         ...++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            45679999999999999988773   358999999881         11  1 3589999999873         34578


Q ss_pred             eeEEEecccccccChh---------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ||+|+++.+.+.....         ....+++.+.++|+|||.+++..+...          ...++...++. .|..+.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~----------~~~~~l~~l~~-~f~~v~  186 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRS-LFTKVK  186 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc----------CHHHHHHHHHh-CceEEE
Confidence            9999998765443211         124688999999999999999775442          34455444444 687777


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       187 ~~K  189 (209)
T PRK11188        187 VRK  189 (209)
T ss_pred             EEC
Confidence            643

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.39  E-value=7.7e-12  Score=100.79  Aligned_cols=124  Identities=16%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|.++..+++  ++.+|+++|+++.+++.+++++...+. .+++++.+|+.+.  .....+|.++...
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~  117 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG  117 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence            3557999999999999988875  567999999999999999999877665 4699999988652  1123457665422


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEe
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIV  247 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~Gf~~~~~~  247 (274)
                      .      .....+++.+.++|+|||.+++......          +..++.+.++   ..+++++++.
T Consensus       118 ~------~~~~~~l~~~~~~LkpgG~li~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  169 (196)
T PRK07402        118 G------RPIKEILQAVWQYLKPGGRLVATASSLE----------GLYAISEGLAQLQARNIEVVQAA  169 (196)
T ss_pred             C------cCHHHHHHHHHHhcCCCeEEEEEeecHH----------HHHHHHHHHHhcCCCCceEEEEE
Confidence            1      2345789999999999999998764221          2233444454   4466766654

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=2.9e-11  Score=93.69  Aligned_cols=131  Identities=19%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      +..+.+|+|+|||||.+++..+-.|+ +|+++|+++++++.++++....  ..++.|+.+|+.+..  .++|.|+.+..|
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimNPPF  118 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMNPPF  118 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEECCCC
Confidence            56678999999999999999988786 8999999999999999999873  367999999998654  568999999998


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      ...-...-..++....+..   -.++......           +.+.+.+..+.+|+++........+++
T Consensus       119 G~~~rhaDr~Fl~~Ale~s---~vVYsiH~a~-----------~~~f~~~~~~~~G~~v~~~~~~~~~iP  174 (198)
T COG2263         119 GSQRRHADRPFLLKALEIS---DVVYSIHKAG-----------SRDFVEKFAADLGGTVTHIERARFPIP  174 (198)
T ss_pred             ccccccCCHHHHHHHHHhh---heEEEeeccc-----------cHHHHHHHHHhcCCeEEEEEEEEEecC
Confidence            7652111124445554433   3333333211           678899999999999887765554444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.38  E-value=5.2e-12  Score=119.70  Aligned_cols=132  Identities=22%  Similarity=0.163  Sum_probs=102.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.|++++..+++. ++++++.+|+.+..  ..++||+|++...
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            468999999999999999998776 6999999999999999999988875 58999999987732  2468999999765


Q ss_pred             ccccC---------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~---------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ...-.         ......++..+.++|+|||.+++.....         .  .....+.++++|+.+..+....
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------~--~~~~~~~~~~~g~~~~~i~~~~  682 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------G--FKMDEEGLAKLGLKAEEITAKT  682 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------c--CChhHHHHHhCCCeEEEEecCC
Confidence            32111         1234577888999999999988865322         1  1223778888999998887644

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.37  E-value=8.1e-12  Score=110.40  Aligned_cols=131  Identities=18%  Similarity=0.095  Sum_probs=96.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|.++..++..++ +|+++|+++.+++.|++++..+++. .+++++.+|+++..     ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            468999999999999987666555 9999999999999999999988775 47999999998732     2457999999


Q ss_pred             cccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh----cCCCcEEEEe
Q 024021          181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ----PMGFQAISIV  247 (274)
Q Consensus       181 ~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gf~~~~~~  247 (274)
                      ..+...-..       .....++....++|+|||.+++...+.         +.+.+++.+++.    .+|-++..+.
T Consensus       300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~---------~~~~~~f~~~v~~aa~~~~~~~~~l~  368 (396)
T PRK15128        300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG---------LMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC---------cCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            877533222       123456677889999999999876433         234555555554    4454444443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.37  E-value=5.6e-12  Score=104.11  Aligned_cols=102  Identities=17%  Similarity=0.239  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D  176 (274)
                      .++.+|||+|||+|+.+..++.   .+.+++++|+++++++.|++++...++.++++++.+|+.+..       +.++||
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            3468999999999998887765   356999999999999999999999988889999999997731       246899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+...     +.+....+++.+.+.|+|||.+++..
T Consensus       147 ~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        147 FAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             EEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            999532     23455678899999999999988743

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.36  E-value=4.3e-12  Score=104.56  Aligned_cols=126  Identities=25%  Similarity=0.225  Sum_probs=96.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~D~v  178 (274)
                      ..|+.+|||.|+|+|.++..|++   +..+|+.+|+.++.++.|++++...++.+++++...|+.+ .+   ....+|.|
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            45778999999999999999987   5679999999999999999999999998899999999975 22   23579999


Q ss_pred             EecccccccChhHHHHHHHHHHhcc-cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +..     +  +....++..+.++| ++||++++......          ......+.|++.||..+++.+
T Consensus       118 fLD-----l--p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie----------Qv~~~~~~L~~~gf~~i~~~E  171 (247)
T PF08704_consen  118 FLD-----L--PDPWEAIPHAKRALKKPGGRICCFSPCIE----------QVQKTVEALREHGFTDIETVE  171 (247)
T ss_dssp             EEE-----S--SSGGGGHHHHHHHE-EEEEEEEEEESSHH----------HHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEe-----C--CCHHHHHHHHHHHHhcCCceEEEECCCHH----------HHHHHHHHHHHCCCeeeEEEE
Confidence            942     2  23356789999999 89999988773332          456677788889998877544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=1.1e-11  Score=108.13  Aligned_cols=105  Identities=19%  Similarity=0.206  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~  181 (274)
                      ..+..+||||||+|..+..++.  ++..++|+|+++.+++.+.+++...++ .++.++.+|+..   ..+++++|.|+++
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~ln  199 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVH  199 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence            3446999999999999999987  577999999999999999999887766 469999999864   4567899999987


Q ss_pred             ccccccChh-H----HHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPE-M----RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~-~----~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....+ +.. .    ...+++.+.++|+|||.+.+.+
T Consensus       200 FPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        200 FPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             CCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            65432 211 1    1578999999999999998866

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.34  E-value=5.3e-12  Score=101.95  Aligned_cols=107  Identities=24%  Similarity=0.293  Sum_probs=80.8

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024021           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~  173 (274)
                      ..+++.+ ..++.+|||||||+|+.+..++.   +...|+++|.++..++.|++++...+. .++.++.+|... .....
T Consensus        62 a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccCC
Confidence            3444444 45668999999999999988877   345899999999999999999987654 479999999877 34456


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +||.|++......+|        ..+.+.|++||++++...
T Consensus       141 pfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred             CcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence            899999988877664        347778999999998764

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.34  E-value=2.5e-11  Score=86.43  Aligned_cols=100  Identities=34%  Similarity=0.454  Sum_probs=82.5

Q ss_pred             eEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccccc
Q 024021          111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI  187 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~  187 (274)
                      +++|+|||+|..+..+++ .+.+++++|.++.++..+++..... ...++.++.+|+.+..  ..++||+|++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999987 6679999999999999998543322 2356899999998844  45789999999998874


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                       ......+++.+.+.++|||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             356678899999999999998875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.33  E-value=6.5e-12  Score=97.78  Aligned_cols=114  Identities=17%  Similarity=0.123  Sum_probs=88.0

Q ss_pred             EEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       134 ~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      +|+|+|++|++.|+++....  +...+++++++|+.+ +.++++||+|++..++++++  +...++++++++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence            48999999999998776432  223579999999988 44566899999999999885  44688999999999999999


Q ss_pred             EEEccCCCCC------------C--------C--C---------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          211 TLMFPISDHV------------G--------G--P---------PYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       211 ~~~~~~~~~~------------~--------~--~---------~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +.++......            .        +  .         ....+.+++.++++++||+.+.....
T Consensus        79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~  148 (160)
T PLN02232         79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI  148 (160)
T ss_pred             EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence            9888654220            0        0  0         11248899999999999998866543

>PHA03412 putative methyltransferase; Provisional

Probab=99.33  E-value=3.3e-11  Score=97.75  Aligned_cols=129  Identities=19%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      .+.+|||+|||+|.++..+++     ...+|+++|+++.+++.|+++.      .++.++.+|+......++||+|+++.
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP  122 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP  122 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC
Confidence            467999999999999988765     2459999999999999999886      34789999998754456899999998


Q ss_pred             cccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc-----cCHHHHHHHHhcCCCcE
Q 024021          183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----VSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       183 ~~~~~~~----------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~Gf~~  243 (274)
                      .+.....          .....++++..+++++|+. ++-.......-.+.++.     .+-..+.++.++.|...
T Consensus       123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (241)
T PHA03412        123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM  197 (241)
T ss_pred             CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence            8874321          1235688888886666665 44222221111122211     25577788888888665

>PLN02672 methionine S-methyltransferase

Probab=99.33  E-value=3.7e-11  Score=116.48  Aligned_cols=131  Identities=21%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC---------------CcceEEEEcccCCCCC
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN---------------AKFVSFLKADFFTWCP  171 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~  171 (274)
                      +.+|||+|||+|..+..+++  +..+++++|+|+.+++.|++|...+++               .++++|+.+|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999987  446999999999999999999976532               2579999999988553


Q ss_pred             C--CCeeEEEecccccc------cCh------------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          172 T--ELFDLIFDYTFFCA------IEP------------------------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~--~~~D~v~~~~~~~~------~~~------------------------------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .  .+||+|+++..+-.      +++                              +....++....++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            3  36999999877431      111                              112567788889999999888755


Q ss_pred             ccCCCCCCCCCcccCHHHHH-HHHhcCCCcEEEEeecc
Q 024021          214 FPISDHVGGPPYKVSVSDYE-EVLQPMGFQAISIVDNK  250 (274)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~~~~~~~~~  250 (274)
                      ...           ..+.+. ++++..||..+.+....
T Consensus       279 G~~-----------q~~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        279 GGR-----------PGQAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             Ccc-----------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence            211           345677 69999999998876644

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.32  E-value=3.2e-11  Score=108.89  Aligned_cols=140  Identities=19%  Similarity=0.163  Sum_probs=102.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++. .+++++.+|+.+..     ..++||+|+++
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            3457999999999999999998888999999999999999999887765 46999999987532     23579999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      .....+     ...++.+.+ ++|++++++.+.+.           +...=...|.+.||++.++...+. ++.-+.-|+
T Consensus       375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl~~L~~~gY~l~~i~~~Dm-FP~T~HvE~  436 (443)
T PRK13168        375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA-----------TLARDAGVLVEAGYRLKRAGMLDM-FPHTGHVES  436 (443)
T ss_pred             cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH-----------HhhccHHHHhhCCcEEEEEEEecc-CCCCCcEEE
Confidence            765543     234555555 68999999987433           233333455677999999887653 222234555


Q ss_pred             HHHh
Q 024021          262 LGRW  265 (274)
Q Consensus       262 ~~~~  265 (274)
                      +.++
T Consensus       437 v~lL  440 (443)
T PRK13168        437 MALF  440 (443)
T ss_pred             EEEE
Confidence            5444

>PRK04457 spermidine synthase; Provisional

Probab=99.32  E-value=1.3e-11  Score=103.55  Aligned_cols=108  Identities=18%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+++++++.|++++...+..++++++.+|..+.  ...++||+|++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~  145 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF  145 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence            457899999999999998876  56799999999999999999986554446899999998762  22357999997532


Q ss_pred             cc-ccChh-HHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          184 FC-AIEPE-MRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~-~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      -. ..+.. ....+++.+.+.|+|||++++..+.
T Consensus       146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            11 12211 2368899999999999999986543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.32  E-value=7e-11  Score=97.54  Aligned_cols=140  Identities=19%  Similarity=0.237  Sum_probs=111.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~  179 (274)
                      .+-+||||.||+|........  +.  .+|...|+++..++..++.+...++.+.++|.++|+++.    .....+|+++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            346999999999999887765  32  489999999999999999999999988779999999982    2234579999


Q ss_pred             ecccccccChh-HHHHHHHHHHhcccCCcEEEEEEcc--CC---------CCCCCCCc---ccCHHHHHHHHhcCCCcEE
Q 024021          180 DYTFFCAIEPE-MRAAWAQKIKDFLKPDGELITLMFP--IS---------DHVGGPPY---KVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~~~~~~~~--~~---------~~~~~~~~---~~~~~~~~~~l~~~Gf~~~  244 (274)
                      .++.++.+++. .....+..+.+++.|||+++.+..+  +.         .+..|.++   .-+..|+.++++.+||+.+
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~  294 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI  294 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence            99999999874 4566789999999999999987632  21         11233333   3489999999999999965


Q ss_pred             EEe
Q 024021          245 SIV  247 (274)
Q Consensus       245 ~~~  247 (274)
                      ...
T Consensus       295 ~q~  297 (311)
T PF12147_consen  295 DQR  297 (311)
T ss_pred             hhe
Confidence            543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.31  E-value=1.7e-11  Score=105.68  Aligned_cols=144  Identities=22%  Similarity=0.292  Sum_probs=100.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhc---------CCCCcceEEEEcccCC-----CCCC
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~---------~~~~~~~~~~~~d~~~-----~~~~  172 (274)
                      ++.+|||+|||.|+.+.-.... -..++|+|++...++.|+++...         ....-...|+.+|.+.     ..++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            5689999999999988777664 45999999999999999999821         1011246778888875     1233


Q ss_pred             --CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--------------C-------------C-
Q 024021          173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISD--------------H-------------V-  220 (274)
Q Consensus       173 --~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--------------~-------------~-  220 (274)
                        .+||+|-|...+|+.  +.+....++..+.+.|+|||+++.++.....              .             . 
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~  221 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD  221 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred             cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence              489999999999996  4456678999999999999999986643210              0             0 


Q ss_pred             C----C--------------CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          221 G----G--------------PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       221 ~----~--------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .    |              +.|....+.+.+++++.|++.+.......
T Consensus       222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e  270 (331)
T PF03291_consen  222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE  270 (331)
T ss_dssp             S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred             CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence            0    1              11224688999999999999998765443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02476 O-methyltransferase

Probab=99.31  E-value=5e-11  Score=99.78  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D  176 (274)
                      .++.+|||+||++|+.+.+++.   .+.+++++|.+++..+.|++++...++.++++++.+|+.+..+       .++||
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            4468999999999999999987   3568999999999999999999999998899999999977221       35799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+.-.     +......+++.+.++|+|||.+++-.
T Consensus       197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DN  228 (278)
T PLN02476        197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDN  228 (278)
T ss_pred             EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence            999432     23566788999999999999988743

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.30  E-value=2.9e-11  Score=97.42  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             CccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-
Q 024021           88 PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-  163 (274)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-  163 (274)
                      +.........+..++.  ...+++|||+|++.|+.+++++.  + ..+++.+|++++....|++++...+..+++..+. 
T Consensus        41 pi~~~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~  118 (219)
T COG4122          41 PIIDPETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG  118 (219)
T ss_pred             CCCChhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence            3333333444444544  34568999999999999999987  3 5699999999999999999999999988899988 


Q ss_pred             cccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          164 ADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       164 ~d~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|..+.   ...++||+||.-     .+....+.+++.+.++|+|||.+++-.
T Consensus       119 gdal~~l~~~~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         119 GDALDVLSRLLDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             CcHHHHHHhccCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence            587762   235789999932     234566789999999999999998854

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.28  E-value=9.1e-11  Score=101.35  Aligned_cols=139  Identities=20%  Similarity=0.154  Sum_probs=99.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++. .+++|+.+|+.+..  ..+.||+|++...-
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr  250 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR  250 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence            3468999999999999999999889999999999999999999988876 57999999997632  23579999988664


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR  264 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~  264 (274)
                      ..+.    ..+++.+ ..++|++++++.+.+..          -..++..+   .||++..+...+. ++.-+..|++.+
T Consensus       251 ~G~~----~~~~~~l-~~~~~~~ivyvsc~p~t----------~~rd~~~l---~~y~~~~~~~~Dm-FP~T~HvE~v~~  311 (315)
T PRK03522        251 RGIG----KELCDYL-SQMAPRFILYSSCNAQT----------MAKDLAHL---PGYRIERVQLFDM-FPHTAHYEVLTL  311 (315)
T ss_pred             CCcc----HHHHHHH-HHcCCCeEEEEECCccc----------chhHHhhc---cCcEEEEEEEecc-CCCCCeEEEEEE
Confidence            3332    2333333 33678888888774332          12344333   5999998877543 222234555444


Q ss_pred             h
Q 024021          265 W  265 (274)
Q Consensus       265 ~  265 (274)
                      +
T Consensus       312 l  312 (315)
T PRK03522        312 L  312 (315)
T ss_pred             E
Confidence            3

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=1e-10  Score=105.64  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=97.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...+. .+++++.+|.....+.++||+|++..
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccCCCCCEEEEcC
Confidence            34567999999999998887765   356999999999999999999988776 36999999998865667899999642


Q ss_pred             c------ccc-------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CC
Q 024021          183 F------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GF  241 (274)
Q Consensus       183 ~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf  241 (274)
                      .      +..       +.++       ....++..+.+.|+|||+++..+.+....       -+.+.+..+++.+ +|
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~~~  399 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-------ENELQIEAFLQRHPEF  399 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hHHHHHHHHHHhCCCC
Confidence            2      111       1111       12468999999999999999987655311       1345667777776 46


Q ss_pred             cEEE
Q 024021          242 QAIS  245 (274)
Q Consensus       242 ~~~~  245 (274)
                      ..+.
T Consensus       400 ~~~~  403 (445)
T PRK14904        400 SAEP  403 (445)
T ss_pred             EEec
Confidence            6543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.28  E-value=9.1e-11  Score=93.10  Aligned_cols=138  Identities=20%  Similarity=0.133  Sum_probs=103.8

Q ss_pred             eEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C--------CCCCeeEEE
Q 024021          111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C--------PTELFDLIF  179 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~--------~~~~~D~v~  179 (274)
                      +|||||||||..+.++++  +..+..-.|.++.............+..+-..-+..|+... .        ..+.||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            599999999999999988  77899999999998777776665554433333455666652 1        245899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCCCCcc-cCHHHHHHHHhcCCCcE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGGPPYK-VSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~l~~~Gf~~  243 (274)
                      +.+++|..+-.....++..+.++|++||.+++.-.-..+.               ...+.+. -+.+++.++.+++|+..
T Consensus       108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l  187 (204)
T PF06080_consen  108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL  187 (204)
T ss_pred             ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence            9999999888888999999999999999998865322221               1122222 36789999999999997


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      ++..+
T Consensus       188 ~~~~~  192 (204)
T PF06080_consen  188 EEDID  192 (204)
T ss_pred             Ccccc
Confidence            66544

The function of this family is unknown.

>PRK00811 spermidine synthase; Provisional

Probab=99.27  E-value=5.6e-11  Score=100.97  Aligned_cols=106  Identities=17%  Similarity=0.210  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCC--CCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~--~~~~~D~v~  179 (274)
                      .+.+||++|||+|..+..+++. + .+|+++|+++.+++.|++.++...    ..++++++.+|.....  ..++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4579999999999999988773 4 489999999999999999876421    1468999999988732  356899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +...-...+..  ....+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            86432222222  23678899999999999988753

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.26  E-value=2.8e-11  Score=97.44  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D  176 (274)
                      ..+.+||||||++|+.+.++++   .+.+++.+|.+++..+.|++++...++.++++++.+|..+..       ..++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3568999999999999999986   467999999999999999999999988889999999997621       135799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+...     +......+++.+.++|+|||.+++-.
T Consensus       124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence            999533     23455678899999999999998854

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.26  E-value=4.2e-11  Score=99.58  Aligned_cols=151  Identities=20%  Similarity=0.259  Sum_probs=110.6

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-----CcceEEEEcccCC------
Q 024021          101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-----AKFVSFLKADFFT------  168 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~------  168 (274)
                      ++.....++..++|+|||.|+.++..-+.|. .++|+|++...++.|+++...-..     .-.+.|+.+|.+.      
T Consensus       110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~  189 (389)
T KOG1975|consen  110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL  189 (389)
T ss_pred             HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence            4444456678899999999999988877666 899999999999999998764211     1137889999876      


Q ss_pred             C-CCCCCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC----------------------------
Q 024021          169 W-CPTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS----------------------------  217 (274)
Q Consensus       169 ~-~~~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~----------------------------  217 (274)
                      . .++.+||+|-|..++|+.  ..+..+.++..+.++|+|||+++-+.....                            
T Consensus       190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~  269 (389)
T KOG1975|consen  190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQ  269 (389)
T ss_pred             ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecc
Confidence            2 233449999999999985  345667899999999999999987553211                            


Q ss_pred             ---C-CC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          218 ---D-HV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       218 ---~-~~-------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                         + ..             ..|.|...-.-+..++++.|.+++.+.....
T Consensus       270 k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~d  320 (389)
T KOG1975|consen  270 KEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFAD  320 (389)
T ss_pred             cccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHH
Confidence               0 01             1122334567888999999999988776443

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=2.4e-10  Score=102.75  Aligned_cols=131  Identities=18%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.++++....+.  +++++.+|..+..   ..++||.|++
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence            345689999999999999988873  36999999999999999999988764  3789999997632   3467999997


Q ss_pred             cccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024021          181 YTFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~~~~-------------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  239 (274)
                      ......             ..+.       ....++..+.+.|+|||.+++.+.+....       -+.+.+...++++ 
T Consensus       320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~~v~~~l~~~~  392 (427)
T PRK10901        320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------ENEQQIKAFLARHP  392 (427)
T ss_pred             CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence            553221             0111       12478999999999999999877544211       1456777777776 


Q ss_pred             CCcEEE
Q 024021          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      +|.++.
T Consensus       393 ~~~~~~  398 (427)
T PRK10901        393 DAELLD  398 (427)
T ss_pred             CCEEec
Confidence            566544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.25  E-value=1.1e-10  Score=93.47  Aligned_cols=117  Identities=17%  Similarity=0.304  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|.++..+++   ...+++++|+++.+        .    ..+++++.+|+.+.         .+.++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----IENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            4568999999999999988866   33489999999864        1    13578888888753         24567


Q ss_pred             eeEEEeccccc---c--cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFC---A--IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~---~--~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ||+|++....+   .  ++.    +....++..+.++|+|||.+++..+...          ...++...++.. |..+.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~----------~~~~~l~~l~~~-~~~~~  167 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE----------EIDEYLNELRKL-FEKVK  167 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc----------cHHHHHHHHHhh-hceEE
Confidence            99999865321   1  111    2236789999999999999998653321          455666666663 65444


Q ss_pred             E
Q 024021          246 I  246 (274)
Q Consensus       246 ~  246 (274)
                      +
T Consensus       168 ~  168 (188)
T TIGR00438       168 V  168 (188)
T ss_pred             E
Confidence            4

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=2.8e-10  Score=87.30  Aligned_cols=130  Identities=17%  Similarity=0.283  Sum_probs=103.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ...++|||||+|..+.++++   ++..+.++|++|.+++..++.+..++  .+++.+..|+......++.|+++.+..+.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence            57899999999999998887   45689999999999999999887775  45888999999855559999999987654


Q ss_pred             ccChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~-------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      --+++                   ..+.++..+-.+|.|.|.+++......          .++++.+.++..||.....
T Consensus       122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------KPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------CHHHHHHHHhhcccceeEE
Confidence            32211                   135667777788999999998775442          6889999999999998776


Q ss_pred             eecc
Q 024021          247 VDNK  250 (274)
Q Consensus       247 ~~~~  250 (274)
                      ..+.
T Consensus       192 ~~Rk  195 (209)
T KOG3191|consen  192 MQRK  195 (209)
T ss_pred             EEEe
Confidence            6544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.24  E-value=1.1e-10  Score=100.39  Aligned_cols=105  Identities=23%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             HHHhcCC-CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024021          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL  174 (274)
Q Consensus       100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~  174 (274)
                      .+++... .++.+|||+|||+|.++..+++.   ...|+++|+++++++.|+++....+. +++.++.+|..+. ....+
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~  149 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAP  149 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCC
Confidence            3444333 35579999999999999988872   24799999999999999999877765 5699999998763 33357


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ||+|++......+        ...+.+.|+|||.+++..
T Consensus       150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence            9999987554433        234678899999988754

>PRK01581 speE spermidine synthase; Validated

Probab=99.24  E-value=2.3e-10  Score=98.50  Aligned_cols=140  Identities=15%  Similarity=0.120  Sum_probs=98.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHh--h---cCC-CCcceEEEEcccCCC--CCCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELS--S---SLP-NAKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~--~---~~~-~~~~~~~~~~d~~~~--~~~~~~D  176 (274)
                      ..+.+||++|||+|..+..+++.  ..+|+++|+++++++.|++..  .   ... ..++++++.+|..+.  ...++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            44579999999999999888873  359999999999999999721  1   111 247899999999873  3346799


Q ss_pred             EEEeccccc---ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc-CHHHHHHHHhcCCCcEEEEeecccc
Q 024021          177 LIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV-SVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       177 ~v~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      +|++...-.   ....-....+++.+.+.|+|||++++..-+.       .... ....+.+.++++|+.+.........
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-------~~~~~~~~~i~~tL~~af~~v~~y~t~vPs  301 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-------ADAPLVYWSIGNTIEHAGLTVKSYHTIVPS  301 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-------hhhHHHHHHHHHHHHHhCCceEEEEEecCC
Confidence            999874311   0111223678899999999999987764211       1110 1244788899999988877766544


Q ss_pred             c
Q 024021          253 I  253 (274)
Q Consensus       253 ~  253 (274)
                      +
T Consensus       302 y  302 (374)
T PRK01581        302 F  302 (374)
T ss_pred             C
Confidence            4

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.23  E-value=3.9e-11  Score=101.45  Aligned_cols=104  Identities=19%  Similarity=0.170  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  183 (274)
                      ...++.|||+|||||.+++..++.|+ +|+++|.|. +.+.|.+.+..+++.+.++++.+.+.+ ..|.+++|+|++-+.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            35678999999999999999999888 899999866 459999999999998899999999988 445689999999877


Q ss_pred             cccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024021          184 FCAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~-~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      -+++ .+..+..++-.=.++|+|||.++
T Consensus       137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  137 GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            5554 34677788888889999999876

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.23  E-value=1.4e-10  Score=102.36  Aligned_cols=138  Identities=18%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..++..+.+|+++|+++.+++.|+++...++. .+++|+.+|+.+...  ..+||+|++....
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr  310 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR  310 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence            3457999999999999999998888999999999999999999988776 479999999976332  2469999988776


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR  264 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~  264 (274)
                      ..+.    ..+++.+.+ ++|++++++.+.+.           +...=...|  .||++..+...+. ++.-+.-|.+.+
T Consensus       311 ~G~~----~~~l~~l~~-~~p~~ivyvsc~p~-----------TlaRDl~~L--~gy~l~~~~~~Dm-FPqT~HvE~v~l  371 (374)
T TIGR02085       311 RGIG----KELCDYLSQ-MAPKFILYSSCNAQ-----------TMAKDIAEL--SGYQIERVQLFDM-FPHTSHYEVLTL  371 (374)
T ss_pred             CCCc----HHHHHHHHh-cCCCeEEEEEeCHH-----------HHHHHHHHh--cCceEEEEEEecc-CCCCCcEEEEEE
Confidence            5443    344555544 78999999987332           222223334  6999998877543 222234444443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.22  E-value=2.5e-10  Score=91.61  Aligned_cols=106  Identities=12%  Similarity=0.072  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..++. ...+|+++|.++.+++.+++++...+. .+++++.+|+.+..  ..++||+|+++..
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            3457999999999999986544 345999999999999999999887765 47999999997732  2346999999988


Q ss_pred             ccccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024021          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~  216 (274)
                      +..   .....+++.+..  +|+|++++++.....
T Consensus       131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        131 FRK---GLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            543   233445565655  478999888876443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.22  E-value=1.6e-10  Score=90.78  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....   ++++++.+|+.+.. +...||.|+++..++
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            34579999999999999999988889999999999999999987542   57999999999854 334699999887765


Q ss_pred             ccChhHHHHHHHHHHhc--ccCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDF--LKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~--L~pgG~~~~  211 (274)
                       +..+    .+.++.+.  +.++|.+++
T Consensus        89 -~~~~----~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       89 -ISTP----ILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             -cHHH----HHHHHHhcCCCcceEEEEE
Confidence             3223    33333332  335666655

>PRK03612 spermidine synthase; Provisional

Probab=99.22  E-value=1.3e-10  Score=106.75  Aligned_cols=133  Identities=20%  Similarity=0.207  Sum_probs=94.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHh--hcC---C-CCcceEEEEcccCCC--CCCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~--~~~---~-~~~~~~~~~~d~~~~--~~~~~~D  176 (274)
                      .++++|||+|||+|..+..+++. + .+++++|+++++++.++++.  ...   . ..++++++.+|..+.  ...++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            34579999999999999988773 3 59999999999999999842  211   1 136899999999872  2346899


Q ss_pred             EEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          177 LIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       177 ~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +|++.......+.   -...++++.+.+.|+|||.+++...+....      .....++.+.+++.||.+..
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~i~~~l~~~gf~v~~  441 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA------PKAFWSIEATLEAAGLATTP  441 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc------hHHHHHHHHHHHHcCCEEEE
Confidence            9998754332211   112468899999999999988765221100      01245788999999994433

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=4.3e-10  Score=101.67  Aligned_cols=133  Identities=19%  Similarity=0.164  Sum_probs=97.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.+++++...+.. +++++.+|+.+..  ..++||+|++.
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence            4567999999999999998876   3569999999999999999999888764 4999999997742  12679999986


Q ss_pred             cccccc------C-------hh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-
Q 024021          182 TFFCAI------E-------PE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-  240 (274)
Q Consensus       182 ~~~~~~------~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-  240 (274)
                      ......      |       +.       ....++..+.++|+|||.++..+......       -....+.+.++.++ 
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~vv~~~l~~~~~  400 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-------ENEEVIEAFLEEHPE  400 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------hhHHHHHHHHHhCCC
Confidence            442111      1       11       12467899999999999998765433211       13456666777764 


Q ss_pred             CcEEEEe
Q 024021          241 FQAISIV  247 (274)
Q Consensus       241 f~~~~~~  247 (274)
                      |+.+.+.
T Consensus       401 ~~~~~~~  407 (444)
T PRK14902        401 FELVPLQ  407 (444)
T ss_pred             cEEeccc
Confidence            7776654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.21  E-value=5.1e-10  Score=100.48  Aligned_cols=133  Identities=17%  Similarity=0.167  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~  180 (274)
                      ..++.+|||+|||+|..+..++.   .+.+|+++|+++.+++.+++++...+.. ++++..+|.....  ..++||.|++
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence            34567999999999999988876   3569999999999999999999887764 5899999987632  3567999997


Q ss_pred             ccccc---cc--Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024021          181 YTFFC---AI--EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~~~---~~--~~~---------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  239 (274)
                      .....   .+  .++               ....++..+.+.|+|||.++..+.+....       -+.+.+.+.++.+ 
T Consensus       314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------Ene~vv~~fl~~~~  386 (431)
T PRK14903        314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-------ENTEVVKRFVYEQK  386 (431)
T ss_pred             CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hCHHHHHHHHHhCC
Confidence            54331   11  111               22567899999999999998887655321       1455666666654 


Q ss_pred             CCcEEEE
Q 024021          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      +|..+..
T Consensus       387 ~~~~~~~  393 (431)
T PRK14903        387 DAEVIDI  393 (431)
T ss_pred             CcEEecc
Confidence            5765543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.21  E-value=4.5e-10  Score=100.96  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++  .+.+++++|+++.+++.+++++...+...++.+..+|.....   +.++||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            34568999999999999988876  346999999999999999999988776544555777766532   3567999996


Q ss_pred             c------ccccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          181 Y------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       181 ~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      .      +++...|+       .       ....++..+.++|+|||.++..+.+....       -+...+...++.++
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~  388 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-------ENSEQIKAFLQEHP  388 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence            4      23333221       1       13578899999999999999987655321       14566777777763


Q ss_pred             -Cc
Q 024021          241 -FQ  242 (274)
Q Consensus       241 -f~  242 (274)
                       |.
T Consensus       389 ~~~  391 (426)
T TIGR00563       389 DFP  391 (426)
T ss_pred             CCe
Confidence             54

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.20  E-value=3.9e-10  Score=101.57  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~  177 (274)
                      ..++.+|||+|||+|..+..+++   ...+|+++|+++.+++.+++++...+.. +++++.+|..+..     ..++||.
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence            34568999999999999988876   2458999999999999999999888764 5999999987642     2468999


Q ss_pred             EEecc------cccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024021          178 IFDYT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       178 v~~~~------~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (274)
                      |++..      ++..-++       .       ....++..+.+.|+|||+++..+.+....       -..+.+...++
T Consensus       329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------Ene~~v~~~l~  401 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------ENEAQIEQFLA  401 (434)
T ss_pred             EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hHHHHHHHHHH
Confidence            99743      2222221       1       13578999999999999998876544211       13567777888


Q ss_pred             cC-CCcEE
Q 024021          238 PM-GFQAI  244 (274)
Q Consensus       238 ~~-Gf~~~  244 (274)
                      ++ +|.+.
T Consensus       402 ~~~~~~~~  409 (434)
T PRK14901        402 RHPDWKLE  409 (434)
T ss_pred             hCCCcEec
Confidence            77 57644

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.19  E-value=1.5e-10  Score=95.73  Aligned_cols=101  Identities=16%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  175 (274)
                      ..+.+|||+|+++|+.+.+++.   ++.+++.+|.+++..+.|++++...++.++++++.+|..+..+        .++|
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            4568999999999999998876   4679999999999999999999999988999999999877221        2589


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      |+|+...     +......+++.+.+.|+|||.|++-
T Consensus       158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        158 DFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             cEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            9999432     2345678889999999999998873

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.19  E-value=5.8e-11  Score=94.90  Aligned_cols=105  Identities=25%  Similarity=0.307  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCcchhHHHh----hC-----C--CCeEEEEeCChHHHHHHHHHhhcC-------------------C----
Q 024021          109 KGRALVPGCGTGYDVVAM----AS-----P--ERYVVGLEISDIAIKKAEELSSSL-------------------P----  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l----~~-----~--~~~v~~vD~~~~~~~~a~~~~~~~-------------------~----  154 (274)
                      ..+|+..||++|.-...+    .+     .  ..+|+|+|+|+.+++.|++-.-..                   +    
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            469999999999764322    22     2  248999999999999997732111                   0    


Q ss_pred             ----CCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          155 ----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 ----~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                          +..+|+|...|+.+ ..+.+.||+|+|.+++.+++++....+++.+++.|+|||++++..
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                12469999999998 666678999999999999999999999999999999999999854

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.19  E-value=1.3e-10  Score=92.50  Aligned_cols=139  Identities=18%  Similarity=0.176  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC---CCCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~---~~~~~~~D~v~~~~  182 (274)
                      .+.+|||.+.|-|+.++..++.|+ +|+.+|.+|..++.|+-|--+.++ ..+++++.+|..+   ..++++||+|+-..
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP  213 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP  213 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence            468999999999999999999999 999999999999999876544332 3468999999987   46678899999543


Q ss_pred             c-ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       183 ~-~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      . |.....=....+.++++++|+|||.++-..-.+.....|-.   -+..+.+.|+++||.+++....
T Consensus       214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d---~~~gVa~RLr~vGF~~v~~~~~  278 (287)
T COG2521         214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD---LPKGVAERLRRVGFEVVKKVRE  278 (287)
T ss_pred             CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC---hhHHHHHHHHhcCceeeeeehh
Confidence            3 22111113357889999999999999887754432222211   3688999999999998776553

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.17  E-value=3.5e-10  Score=101.99  Aligned_cols=126  Identities=19%  Similarity=0.183  Sum_probs=95.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~  182 (274)
                      ++.+|||+|||+|.++..+++...+|+++|+++.+++.|++++..++. .+++|+.+|+.+..     ....||+|++..
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            447999999999999999998777999999999999999999987765 57999999987521     234699999766


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .-..+.    ..+++.+.+ ++|++++++.+.+.           +...-.+.|...||++..+...+
T Consensus       371 Pr~G~~----~~~l~~l~~-l~~~~ivyvsc~p~-----------tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       371 PRKGCA----AEVLRTIIE-LKPERIVYVSCNPA-----------TLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CCCCCC----HHHHHHHHh-cCCCEEEEEcCCHH-----------HHHHHHHHHHHCCeeEEEEEEec
Confidence            543332    345555554 78998887765221           44455666777899988877654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.16  E-value=4.4e-10  Score=90.08  Aligned_cols=154  Identities=21%  Similarity=0.275  Sum_probs=101.2

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCC-----------------
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPN-----------------  155 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~-----------------  155 (274)
                      .+.+..+ +.....+..+|||||..|.++..+++ -+ ..+.|+|+++..+..|+++++..-.                 
T Consensus        46 D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~  124 (288)
T KOG2899|consen   46 DPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF  124 (288)
T ss_pred             Chhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence            3444444 33345678999999999999999998 33 4799999999999999997653210                 


Q ss_pred             -----------------CcceEE-------EEcccCCCCCCCCeeEEEeccc--cccc--ChhHHHHHHHHHHhcccCCc
Q 024021          156 -----------------AKFVSF-------LKADFFTWCPTELFDLIFDYTF--FCAI--EPEMRAAWAQKIKDFLKPDG  207 (274)
Q Consensus       156 -----------------~~~~~~-------~~~d~~~~~~~~~~D~v~~~~~--~~~~--~~~~~~~~l~~~~~~L~pgG  207 (274)
                                       .+++.|       ...|+. ......||+|+|..+  +-|+  .++-+..++.++.++|.|||
T Consensus       125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG  203 (288)
T KOG2899|consen  125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG  203 (288)
T ss_pred             ccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence                             001111       122222 223467999999755  3333  45667889999999999999


Q ss_pred             EEEEEEccCCC-----------CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          208 ELITLMFPISD-----------HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       208 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++++.-.+-..           ...-....+.++.+..++.+.+.....++...
T Consensus       204 iLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~  257 (288)
T KOG2899|consen  204 ILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG  257 (288)
T ss_pred             EEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence            99984432210           01112334688999999988865555555544

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.16  E-value=8.2e-10  Score=94.00  Aligned_cols=143  Identities=18%  Similarity=0.181  Sum_probs=109.7

Q ss_pred             CCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC
Q 024021           92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT  168 (274)
Q Consensus        92 ~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~  168 (274)
                      ....+.+...+-++  ..++..|||.-||||.+++.+...|++++|+|++..|+.-|+.|+...+..+ ..+... |+..
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~  257 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN  257 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence            34466666666554  4456799999999999999999999999999999999999999998876543 444554 8888


Q ss_pred             -CCCCCCeeEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          169 -WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       169 -~~~~~~~D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                       +.+.+.+|.|++-..+.-..       ++....+++.+.++|++||++++...               ......+++.|
T Consensus       258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------~~~~~~~~~~~  322 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------RDPRHELEELG  322 (347)
T ss_pred             CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---------------CcchhhHhhcC
Confidence             44445699999988776532       24567899999999999999988763               22334567789


Q ss_pred             CcEEEEeecc
Q 024021          241 FQAISIVDNK  250 (274)
Q Consensus       241 f~~~~~~~~~  250 (274)
                      |.++......
T Consensus       323 f~v~~~~~~~  332 (347)
T COG1041         323 FKVLGRFTMR  332 (347)
T ss_pred             ceEEEEEEEe
Confidence            9998876543

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.15  E-value=1.2e-10  Score=93.27  Aligned_cols=103  Identities=16%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +.++|+|||+|..++.++..--+|+|+|+++.|++.|++..+..-.....++...+..+ ...++++|+|++..++|+++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd  114 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD  114 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence            48999999999777777776558999999999999998876543222223444444444 23468999999999999985


Q ss_pred             hhHHHHHHHHHHhcccCCc-EEEEEEcc
Q 024021          189 PEMRAAWAQKIKDFLKPDG-ELITLMFP  215 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG-~~~~~~~~  215 (274)
                         +..+.+.+.++|+++| .+.+-.+.
T Consensus       115 ---le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  115 ---LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             ---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence               3577899999998877 55555544

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.14  E-value=5.2e-10  Score=89.67  Aligned_cols=125  Identities=24%  Similarity=0.241  Sum_probs=90.1

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~~~  183 (274)
                      ..+||||||.|.++..++.  ++..++|+|+....+..+..++...++ .|+.++.+|+..    ..+++++|-|+.+++
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            4899999999999998887  788999999999999999998877655 579999999987    455688999997654


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEEE
Q 024021          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAIS  245 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gf~~~~  245 (274)
                      =-+.-...      ...+++.+.++|+|||.+.+.+-..          .-.+.+.+.++..  +|..+.
T Consensus        98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~----------~y~~~~~~~~~~~~~~f~~~~  157 (195)
T PF02390_consen   98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE----------EYAEWMLEQFEESHPGFENIE  157 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H----------HHHHHHHHHHHHHSTTEEEE-
T ss_pred             CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhcCcCeEEcc
Confidence            32211111      2588999999999999999877111          1235666666663  677664

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02366 spermidine synthase

Probab=99.14  E-value=8.8e-10  Score=94.27  Aligned_cols=107  Identities=18%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC---CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~---~~~~~~D~v  178 (274)
                      ..+.+||++|||.|..+..+++ ++ .+|+.+|+++.+++.+++.++..+   ..++++++.+|....   .+.++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            3468999999999999999987 33 589999999999999999876421   236899999998662   235689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++...-...+..  ....+++.+.+.|+|||++++..
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            986433222211  23578899999999999987643

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.13  E-value=7.2e-10  Score=92.79  Aligned_cols=105  Identities=18%  Similarity=0.207  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      +..++.|||+|||+|.+++..+..|+ +|+++|. .+|.+.|++.+..+.+.++++.+.+.+.+...+++.|++++-..-
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG  253 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG  253 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence            56778999999999999999999887 8999998 569999999999998899999999999997777899999986543


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          185 CAI-EPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ..+ .+.++..++ ..++.|+|.|.++-.
T Consensus       254 ~mL~NERMLEsYl-~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  254 YMLVNERMLESYL-HARKWLKPNGKMFPT  281 (517)
T ss_pred             hhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence            333 333444443 456999999987643

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.13  E-value=7.5e-10  Score=94.83  Aligned_cols=140  Identities=17%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEE-ccc---CCC--CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADF---FTW--CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~---~~~--~~~~~~D~v~  179 (274)
                      ..++||||||+|.....++.  .+.+++|+|+++.+++.|++++..+ ++.+++++.. .|.   ...  .+.+.||+|+
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv  194 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL  194 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence            46999999999988777655  5789999999999999999999988 6777888864 232   221  2356899999


Q ss_pred             ecccccccChhHH---HHHHHH----------------HHhcccCCcEEEEEEccCCCC----CCCCCcc------cCHH
Q 024021          180 DYTFFCAIEPEMR---AAWAQK----------------IKDFLKPDGELITLMFPISDH----VGGPPYK------VSVS  230 (274)
Q Consensus       180 ~~~~~~~~~~~~~---~~~l~~----------------~~~~L~pgG~~~~~~~~~~~~----~~~~~~~------~~~~  230 (274)
                      |+..|+.-..+..   ..-.+.                ..+++.+||.+-++..-..+.    ....+|.      -+..
T Consensus       195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~  274 (321)
T PRK11727        195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLP  274 (321)
T ss_pred             eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHH
Confidence            9999875432211   111111                234455777755433222111    0011111      2788


Q ss_pred             HHHHHHhcCCCcEEEEee
Q 024021          231 DYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~  248 (274)
                      .+.+.|++.|...+.+.+
T Consensus       275 ~l~~~L~~~~~~~~~~~e  292 (321)
T PRK11727        275 PLYRALKKVGAVEVKTIE  292 (321)
T ss_pred             HHHHHHHHcCCceEEEEE
Confidence            999999999986666554

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.13  E-value=2.5e-10  Score=102.30  Aligned_cols=102  Identities=20%  Similarity=0.153  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      +..|||+|||+|.+....++.+      .+|+++|-++.++...++++..+++.++|+++.+|+++...+.++|+|++=.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            4689999999999987665543      4999999999999888887777778889999999999977777999999854


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      .-.....+...+.+....+.|+|||+++
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            4333444566778899999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00417 speE spermidine synthase

Probab=99.13  E-value=6.9e-10  Score=93.81  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      .+.+||++|||+|..+..+++.  ..+++++|+++++++.+++.++...   ..++++++.+|..+.  ...++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3469999999999999888763  3589999999999999999875432   135788888888662  22468999998


Q ss_pred             cccccccChhH--HHHHHHHHHhcccCCcEEEEE
Q 024021          181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       181 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ......-+...  ...+++.+.+.|+|||.+++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            65532222122  467889999999999999886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.12  E-value=4.7e-10  Score=88.40  Aligned_cols=105  Identities=21%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC-----CCCCCee
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~-----~~~~~~D  176 (274)
                      ..++.+|||+|||+|..++.++..  +.+|+..|.++ .++..+.++..++  ...++.+...|..+.     ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            345689999999999999988886  66999999988 9999999998875  456788888887651     2346899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|++..+++.  ++....+++.+.++|+++|.+++..
T Consensus       122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            9999999875  3667889999999999999866654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.12  E-value=1.2e-09  Score=92.64  Aligned_cols=136  Identities=16%  Similarity=0.158  Sum_probs=107.8

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~  189 (274)
                      ...+|+|.|.|..+..+...-.++-+++++...+..++.... .+    |+.+.+|.++..|.  -|+||..+++++|.+
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWMKWILHDWTD  251 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEEEeecccCCh
Confidence            689999999999999888733368888888877777776664 32    88899999886544  479999999999999


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCC---C----------------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          190 EMRAAWAQKIKDFLKPDGELITLMFPISDH-VGG---P----------------PYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~~---~----------------~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++..++++++++.|+|||.+++.+...... ..+   .                -...+..+++..+.++||.+..+...
T Consensus       252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence            999999999999999999999988744321 111   0                11237899999999999999888775


Q ss_pred             ccc
Q 024021          250 KLA  252 (274)
Q Consensus       250 ~~~  252 (274)
                      ...
T Consensus       332 ~~~  334 (342)
T KOG3178|consen  332 AYS  334 (342)
T ss_pred             cCc
Confidence            543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.12  E-value=1.1e-09  Score=95.93  Aligned_cols=134  Identities=22%  Similarity=0.130  Sum_probs=100.1

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEec
Q 024021          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~~D~v~~~  181 (274)
                      +++|||+-|-||.++...+..|+ +|++||.|..+++.|++|+..+++. .++.|+++|+++..     ...+||+|+..
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD  297 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD  297 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence            88999999999999999999999 9999999999999999999999874 56899999999832     23489999975


Q ss_pred             cc-ccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          182 TF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       182 ~~-~~~~~------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      .+ |..-.      ......++..+.++|+|||.+++.+....-.     ...-.+.+.+.+...|.....+.
T Consensus       298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-----~~~f~~~i~~a~~~~~~~~~~~~  365 (393)
T COG1092         298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-----SDLFLEIIARAAAAAGRRAQEIE  365 (393)
T ss_pred             CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-----HHHHHHHHHHHHHhcCCcEEEee
Confidence            43 22111      1234678899999999999999877433210     00123445555566666665554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.12  E-value=1.7e-09  Score=91.16  Aligned_cols=110  Identities=19%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||+|..+..++.   ....|+++|+++.+++.+++++...+. .++.++..|.... ...+.||.|++.
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEc
Confidence            34668999999999999988766   245899999999999999999988776 3589999998663 233569999975


Q ss_pred             ccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          182 TFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~-------------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      .....             +.+.       ....+++.+.+.|+|||+++..+.+.
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            43221             1111       12468999999999999998876544

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.11  E-value=1.6e-09  Score=88.54  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      ..++||||+|.|..+..++..-.+|++.|.|+.|....+++-        .+.+..|-.. ..+.+||+|.|.+++...+
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~-~~~~~fDvIscLNvLDRc~  165 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ-QTDFKFDVISCLNVLDRCD  165 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEehhhhh-ccCCceEEEeehhhhhccC
Confidence            468999999999999999876668999999999987776542        3333322211 1235799999999998875


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEEEE---------ccC-CCC-------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          189 PEMRAAWAQKIKDFLKPDGELITLM---------FPI-SDH-------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~~~---------~~~-~~~-------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .+  ..+++.+++.|+|+|++++..         ++. ...       ..|..+.-....+.+.++.+||+++.....++
T Consensus       166 ~P--~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY  243 (265)
T PF05219_consen  166 RP--LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY  243 (265)
T ss_pred             CH--HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence            33  578999999999999988733         221 000       01111222345555889999999999887665


Q ss_pred             ccC
Q 024021          252 AIG  254 (274)
Q Consensus       252 ~~~  254 (274)
                      -..
T Consensus       244 LcE  246 (265)
T PF05219_consen  244 LCE  246 (265)
T ss_pred             ccc
Confidence            443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.09  E-value=7.7e-10  Score=87.45  Aligned_cols=141  Identities=15%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             hhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc
Q 024021           78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK  157 (274)
Q Consensus        78 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  157 (274)
                      |.+.|.+....|- ..|-..+...+.. ..+...|-|+|||.+.++..+. .+..|..+|+-+                .
T Consensus        44 YH~Gfr~Qv~~WP-~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva----------------~  104 (219)
T PF05148_consen   44 YHEGFRQQVKKWP-VNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVA----------------P  104 (219)
T ss_dssp             HHHHHHHHHCTSS-S-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-----------------S
T ss_pred             HHHHHHHHHhcCC-CCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhcc-cCceEEEeeccC----------------C
Confidence            3445555555665 3344444555542 1223699999999999996653 556899999954                2


Q ss_pred             ceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021          158 FVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       158 ~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (274)
                      +-.+..+|+.+ +.+++.+|++++...+..   .++..++.+..|+|||||.+.+++-...        +.+.+++.+.+
T Consensus       105 n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------f~~~~~F~~~~  173 (219)
T PF05148_consen  105 NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------FENVKQFIKAL  173 (219)
T ss_dssp             STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------S-HHHHHHHH
T ss_pred             CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------CcCHHHHHHHH
Confidence            34567899987 778889999997766654   4677899999999999999999884332        23789999999


Q ss_pred             hcCCCcEEEEee
Q 024021          237 QPMGFQAISIVD  248 (274)
Q Consensus       237 ~~~Gf~~~~~~~  248 (274)
                      +..||.......
T Consensus       174 ~~~GF~~~~~d~  185 (219)
T PF05148_consen  174 KKLGFKLKSKDE  185 (219)
T ss_dssp             HCTTEEEEEEE-
T ss_pred             HHCCCeEEeccc
Confidence            999999988654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=99.09  E-value=7.2e-09  Score=86.28  Aligned_cols=138  Identities=22%  Similarity=0.290  Sum_probs=102.1

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc---CC-------------------------------
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS---LP-------------------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~---~~-------------------------------  154 (274)
                      +.+||-.|||.|.++..++..|..+.|.|+|--|+-...-.+..   .+                               
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p  136 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP  136 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence            36999999999999999999999999999999887554432221   00                               


Q ss_pred             -----CCcceEEEEcccCCCC-C---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc---CCCC--C
Q 024021          155 -----NAKFVSFLKADFFTWC-P---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP---ISDH--V  220 (274)
Q Consensus       155 -----~~~~~~~~~~d~~~~~-~---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~---~~~~--~  220 (274)
                           ...++....||+.+.. +   .++||+|++...+.-.  .+.-.+++.|.++|||||+++=.-.-   ..+.  .
T Consensus       137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~  214 (270)
T PF07942_consen  137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP  214 (270)
T ss_pred             ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence                 1235778888988832 2   2589999998776654  56789999999999999976542211   1111  1


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          221 GGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ......++.+|+.++++..||+++..+.
T Consensus       215 ~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  215 NEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            1223668999999999999999988766

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.08  E-value=3.3e-09  Score=83.98  Aligned_cols=127  Identities=20%  Similarity=0.293  Sum_probs=92.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCe---------EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  174 (274)
                      .++..|||.-||+|.+.+..+.  .+..         ++|+|+++.++..|++++...+....+.+...|+.+.. ..+.
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~  106 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS  106 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence            4457999999999999987765  3333         89999999999999999998888888999999999855 6778


Q ss_pred             eeEEEeccccccc-Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          175 FDLIFDYTFFCAI-EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       175 ~D~v~~~~~~~~~-~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +|.|+++..+..- ..     .....+++.+.+++++ ..+++..              ....+.+.+...++.......
T Consensus       107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~--------------~~~~~~~~~~~~~~~~~~~~~  171 (179)
T PF01170_consen  107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT--------------SNRELEKALGLKGWRKRKLYN  171 (179)
T ss_dssp             SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE--------------SCCCHHHHHTSTTSEEEEEEE
T ss_pred             CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE--------------CCHHHHHHhcchhhceEEEEE
Confidence            9999999998753 21     2335678888999998 4444433              345677888888887766544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.07  E-value=2.3e-09  Score=85.61  Aligned_cols=104  Identities=12%  Similarity=-0.048  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CC-CCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~-~~~D~v~~  180 (274)
                      ..+.+|||++||+|.++..++..|+ .|+++|.++.+++.+++++...+..++++++.+|+.+..    .. ..||+|+.
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            3568999999999999999999887 899999999999999999988876667999999996621    12 24799888


Q ss_pred             cccccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~  213 (274)
                      ...+..-   ....++..+.  .+|+++|.+++..
T Consensus       128 DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       128 DPPFFNG---ALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             CcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            7777542   2234444443  4688888776654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.07  E-value=5.6e-10  Score=94.20  Aligned_cols=105  Identities=20%  Similarity=0.228  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCcchhHH----HhhC------CCCeEEEEeCChHHHHHHHHHhhc-----------------------CC-
Q 024021          109 KGRALVPGCGTGYDVV----AMAS------PERYVVGLEISDIAIKKAEELSSS-----------------------LP-  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~----~l~~------~~~~v~~vD~~~~~~~~a~~~~~~-----------------------~~-  154 (274)
                      ..+|+..||+||.-..    .+.+      ...+|+|+|+|+.+++.|++-.-.                       .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999996643    2222      135899999999999999875211                       00 


Q ss_pred             ------CCcceEEEEcccCCC--CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          155 ------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 ------~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                            +...|+|...|+.+.  .+.+.||+|+|.+++.|++++....+++++.+.|+|||++++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  235689999999873  23578999999999999999889999999999999999987754

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.07  E-value=1.2e-09  Score=92.04  Aligned_cols=126  Identities=23%  Similarity=0.164  Sum_probs=91.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC----CCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~----~~~~~D~v~~~  181 (274)
                      .+++|||+-|-||.++...+..|+ +|+.||.|..+++.+++++..+++. .+++|+..|+++..    ..++||+|++.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD  202 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD  202 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence            468999999999999999888887 8999999999999999999988874 67999999998722    24689999986


Q ss_pred             cc-ccc--cC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021          182 TF-FCA--IE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       182 ~~-~~~--~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      .+ |..  .. ......++..+.++|+|||.++++..+.         .++.+.+.+.+.+++-+
T Consensus       203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~---------~i~~~~l~~~~~~~a~~  258 (286)
T PF10672_consen  203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH---------HISPDFLLEAVAEAARE  258 (286)
T ss_dssp             -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T---------TS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc---------ccCHHHHHHHHHHhCcc
Confidence            44 211  00 1344678889999999999988776433         34667777777766533

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=5.8e-09  Score=85.21  Aligned_cols=106  Identities=17%  Similarity=0.164  Sum_probs=83.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~D~v~  179 (274)
                      .+..+||+|||+|..+..++.  +..+++++|.|+.++..|.+|+...++.+++..++-+...      ....+++|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            345899999999999999887  6679999999999999999999998888888888554443      23457899999


Q ss_pred             ecccccccCh------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~------------------------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++..+..-++                        +....+..-+.+.|+|||.+.+..
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~  285 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL  285 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence            9987643221                        112456677789999999888765

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.01  E-value=4.7e-09  Score=87.51  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCcchhH----HHhhC-------CCCeEEEEeCChHHHHHHHHHhhc-----CC------------------
Q 024021          109 KGRALVPGCGTGYDV----VAMAS-------PERYVVGLEISDIAIKKAEELSSS-----LP------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~----~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~-----~~------------------  154 (274)
                      .-+|.-.||+||.-.    +.+.+       ...+|+|+|++..+++.|+.-.-.     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            569999999999654    33333       135899999999999999764322     11                  


Q ss_pred             -----CCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       155 -----~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                           +...|.|...|+.... ..+.||+|+|.+++.+++.+....++.+++..|+|||++++..
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                 1235888889988744 6678999999999999999888999999999999999999854

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.01  E-value=5.5e-09  Score=91.82  Aligned_cols=135  Identities=17%  Similarity=0.081  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------  171 (274)
                      +.+|||++||+|.++..+++...+|+++|.++.+++.+++++..++. .+++|+.+|+.+...                 
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~  285 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK  285 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccccc
Confidence            35799999999999998888767999999999999999999988776 479999999876211                 


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH-HHHHHHHhcCCCcEEEEeecc
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV-SDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ..+||+|+....-..+.    ..+++.+.+   |++++++.+.+.           +. .++. .|.+ ||++.++...+
T Consensus       286 ~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~p~-----------tlarDl~-~L~~-gY~l~~v~~~D  345 (362)
T PRK05031        286 SYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCNPE-----------TLCENLE-TLSQ-THKVERFALFD  345 (362)
T ss_pred             CCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeCHH-----------HHHHHHH-HHcC-CcEEEEEEEcc
Confidence            12589999776643332    344455544   688888877332           32 3344 4444 99998887754


Q ss_pred             cccCCccchhHHHHh
Q 024021          251 LAIGPRKGREKLGRW  265 (274)
Q Consensus       251 ~~~~~~~~~~~~~~~  265 (274)
                      . ++.-...|.+.++
T Consensus       346 m-FPqT~HvE~v~lL  359 (362)
T PRK05031        346 Q-FPYTHHMECGVLL  359 (362)
T ss_pred             c-CCCCCcEEEEEEE
Confidence            3 3333345555444

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.00  E-value=1.3e-09  Score=86.36  Aligned_cols=108  Identities=23%  Similarity=0.171  Sum_probs=82.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~  180 (274)
                      .++.++||+-||+|.++...+.+|+ +|+.||.++.++...++++...+..+++.++..|.....     ...+||+|++
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            5678999999999999999988887 999999999999999999988877677999999976521     4578999999


Q ss_pred             cccccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024021          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~  216 (274)
                      ..++..-.  ....+++.+.  .+|+++|.+++.....
T Consensus       121 DPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  121 DPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             --STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            88876531  1356777776  7999999888866433

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.00  E-value=4.2e-09  Score=87.15  Aligned_cols=146  Identities=20%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             HhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC----------------C---------
Q 024021          102 HQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP----------------N---------  155 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~----------------~---------  155 (274)
                      +......+.++||+|||+-.....-+.+-+ +|+..|+.+..++..++.+...+                .         
T Consensus        50 f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~  129 (256)
T PF01234_consen   50 FSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE  129 (256)
T ss_dssp             HHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred             hCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence            333345567999999999544322232333 89999999999987777665432                0         


Q ss_pred             --Ccce-EEEEcccCCCCC--C-----CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--CC
Q 024021          156 --AKFV-SFLKADFFTWCP--T-----ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISDH--VG  221 (274)
Q Consensus       156 --~~~~-~~~~~d~~~~~~--~-----~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--~~  221 (274)
                        ...| .++.+|+.+..|  +     ++||+|++..+++..  +.+.....++++.++|||||.+++...-....  .+
T Consensus       130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence              0113 477899987322  1     359999999999886  34677899999999999999998866432211  11


Q ss_pred             CC---CcccCHHHHHHHHhcCCCcEEEEe
Q 024021          222 GP---PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       222 ~~---~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +.   ...++.+.+.+.++++||.++..+
T Consensus       210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  210 GHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence            11   223689999999999999999888

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.99  E-value=8.5e-09  Score=78.18  Aligned_cols=112  Identities=18%  Similarity=0.125  Sum_probs=92.1

Q ss_pred             HHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------
Q 024021          100 HLHQSGAL-PKGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------  169 (274)
Q Consensus       100 ~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------  169 (274)
                      .+...... .+.-|||+|.|||.++..+++.|.   .++++|++++.+....+..      +.++++.+|.++.      
T Consensus        39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e  112 (194)
T COG3963          39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGE  112 (194)
T ss_pred             HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhh
Confidence            34444333 346999999999999999988543   7999999999999998887      4467899998772      


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      .....||.|++.-.+-.+|....-++++.+...|.+||.++...+++-
T Consensus       113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~  160 (194)
T COG3963         113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL  160 (194)
T ss_pred             cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence            345679999999888888888888999999999999999999888743

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=3.7e-09  Score=83.09  Aligned_cols=111  Identities=19%  Similarity=0.195  Sum_probs=85.7

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEE
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSF  161 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~~~~  161 (274)
                      +..+.+++.....++.+.||+|+|+|+++..++.    .|...+|||.-++.++.+++++...-         ...++.+
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            4445566665567889999999999999876653    56567999999999999999886543         1356889


Q ss_pred             EEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          162 LKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       162 ~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.+|... .....+||.|.+-.....+        -+++.+.|++||.+++-.
T Consensus       149 vvGDgr~g~~e~a~YDaIhvGAaa~~~--------pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  149 VVGDGRKGYAEQAPYDAIHVGAAASEL--------PQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             EeCCccccCCccCCcceEEEccCcccc--------HHHHHHhhccCCeEEEee
Confidence            9999988 5556789999987544333        367888899999998855

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.94  E-value=8.3e-09  Score=83.61  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=87.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~  187 (274)
                      ...|.|+|||-+.++.   ..-..|+.+|+-+                .+-+++.+|+.+ +.++++.|++++...+.. 
T Consensus       181 ~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-  240 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-  240 (325)
T ss_pred             ceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhhhc-
Confidence            3689999999988776   3345799999843                346788999998 778899999996655433 


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                        .++..++.++.++|++||.+++.+...        .+.+...+.+.+...||.+.....
T Consensus       241 --tn~~df~kEa~RiLk~gG~l~IAEv~S--------Rf~dv~~f~r~l~~lGF~~~~~d~  291 (325)
T KOG3045|consen  241 --TNLADFIKEANRILKPGGLLYIAEVKS--------RFSDVKGFVRALTKLGFDVKHKDV  291 (325)
T ss_pred             --ccHHHHHHHHHHHhccCceEEEEehhh--------hcccHHHHHHHHHHcCCeeeehhh
Confidence              466789999999999999999988433        334788899999999999877654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.94  E-value=5.4e-09  Score=83.67  Aligned_cols=99  Identities=15%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..++.+|+|+.||.|.++..+++  .+..|+++|++|.+++..++++..+++.+++..+.+|..+..+...+|-|++..+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            45678999999999999999988  6779999999999999999999999988889999999998666788999997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      -..      ..++..+..++++||.+-
T Consensus       179 ~~~------~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  179 ESS------LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             SSG------GGGHHHHHHHEEEEEEEE
T ss_pred             HHH------HHHHHHHHHHhcCCcEEE
Confidence            332      246788999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.94  E-value=1.8e-08  Score=81.12  Aligned_cols=121  Identities=15%  Similarity=0.042  Sum_probs=90.6

Q ss_pred             EEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecccccccC
Q 024021          112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFCAIE  188 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~~~~~~~  188 (274)
                      |.||||-.|++..+|++.|.  +++++|+++..++.|++++...++.+++++..+|-.+....+ ..|.|+..++-.   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG---   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG---   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence            68999999999999999776  899999999999999999999998899999999988755444 489998766644   


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                       .....+++.....++....+++.-..            ....++++|.++||.+++-.-
T Consensus        78 -~lI~~ILe~~~~~~~~~~~lILqP~~------------~~~~LR~~L~~~gf~I~~E~l  124 (205)
T PF04816_consen   78 -ELIIEILEAGPEKLSSAKRLILQPNT------------HAYELRRWLYENGFEIIDEDL  124 (205)
T ss_dssp             -HHHHHHHHHTGGGGTT--EEEEEESS-------------HHHHHHHHHHTTEEEEEEEE
T ss_pred             -HHHHHHHHhhHHHhccCCeEEEeCCC------------ChHHHHHHHHHCCCEEEEeEE
Confidence             34567777777777666666665421            578999999999999987543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.91  E-value=1.3e-09  Score=86.74  Aligned_cols=139  Identities=19%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      .-..++||||+-|.....+...+. +++.+|.|..|++.++..-. .+  -.+....+|-.. ....+++|+|+++..+|
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslH  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLH  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhh
Confidence            346899999999999999988666 89999999999998876532 21  235666777655 45567999999999998


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCC--------------CCCCCCcc----cCHHHHHHHHhcCCCcEEEEe
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD--------------HVGGPPYK----VSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--------------~~~~~~~~----~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +..  +++..+.++...|||+|.++...++..-              ..+|..-+    ....++..++..+||....+.
T Consensus       149 W~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD  226 (325)
T KOG2940|consen  149 WTN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD  226 (325)
T ss_pred             hhc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence            873  4567889999999999999987766531              12232222    246889999999999987765


Q ss_pred             eccc
Q 024021          248 DNKL  251 (274)
Q Consensus       248 ~~~~  251 (274)
                      ....
T Consensus       227 tDEi  230 (325)
T KOG2940|consen  227 TDEI  230 (325)
T ss_pred             ccce
Confidence            5433

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.90  E-value=2.6e-08  Score=87.30  Aligned_cols=137  Identities=15%  Similarity=0.046  Sum_probs=93.7

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----------------
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----------------  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----------------  172 (274)
                      +.+|||++||+|.++..+++....|+++|+++++++.|+++...++. .+++|+.+|+.+....                
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK  276 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence            35799999999999999888667999999999999999999988776 3699999999762211                


Q ss_pred             -CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       173 -~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                       ..||+|+....=..+.    ..+++.+.+   |++++++.+.+.           +...=...|.+ ||++.++...+.
T Consensus       277 ~~~~d~v~lDPPR~G~~----~~~l~~l~~---~~~ivYvsC~p~-----------tlaRDl~~L~~-~Y~l~~v~~~Dm  337 (353)
T TIGR02143       277 SYNCSTIFVDPPRAGLD----PDTCKLVQA---YERILYISCNPE-----------TLKANLEQLSE-THRVERFALFDQ  337 (353)
T ss_pred             cCCCCEEEECCCCCCCc----HHHHHHHHc---CCcEEEEEcCHH-----------HHHHHHHHHhc-CcEEEEEEEccc
Confidence             1379999765532222    344455444   788888887332           23233334443 599988877543


Q ss_pred             ccCCccchhHHHHhh
Q 024021          252 AIGPRKGREKLGRWK  266 (274)
Q Consensus       252 ~~~~~~~~~~~~~~~  266 (274)
                       ++.-+..|++.++.
T Consensus       338 -FP~T~HvE~v~lL~  351 (353)
T TIGR02143       338 -FPYTHHMECGVLLE  351 (353)
T ss_pred             -CCCCCcEEEEEEEE
Confidence             33333455555443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.90  E-value=1.5e-08  Score=86.31  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=70.8

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      +..++.... .++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+..++++++.+|+.+... ..||
T Consensus        25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d  103 (294)
T PTZ00338         25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD  103 (294)
T ss_pred             HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence            444444333 35579999999999999999988889999999999999999988765544689999999987432 3689


Q ss_pred             EEEeccccccc
Q 024021          177 LIFDYTFFCAI  187 (274)
Q Consensus       177 ~v~~~~~~~~~  187 (274)
                      .|+++..++.-
T Consensus       104 ~VvaNlPY~Is  114 (294)
T PTZ00338        104 VCVANVPYQIS  114 (294)
T ss_pred             EEEecCCcccC
Confidence            99988776643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.89  E-value=2.1e-09  Score=82.82  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=58.4

Q ss_pred             eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEeccccc
Q 024021          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~D~v~~~~~~~  185 (274)
                      .|+|+.||.|.+++++++...+|+++|+++..++.|+.++...|..++++++.+|+.+....   . .+|+|+++.++.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            68999999999999999998899999999999999999999999888999999999884322   2 289999987765

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.89  E-value=7.4e-08  Score=77.13  Aligned_cols=111  Identities=22%  Similarity=0.265  Sum_probs=89.2

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---  169 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---  169 (274)
                      ..+..+++  ...++++||+|.=||+.+..++.   .+.+|+++|+++...+.+.+..+..+...++++++++..+.   
T Consensus        63 ~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   63 QFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence            33445555  34578999999999999987776   67899999999999999999999999999999999998762   


Q ss_pred             ----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          170 ----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       170 ----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                          ...++||++|.    .+ +......+.+++.+++++||+|++-.
T Consensus       141 l~~~~~~~tfDfaFv----Da-dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFV----DA-DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEE----cc-chHHHHHHHHHHHhhcccccEEEEec
Confidence                23568999993    22 23444588899999999999998844

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.88  E-value=1.9e-08  Score=82.10  Aligned_cols=102  Identities=25%  Similarity=0.207  Sum_probs=83.6

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~~~  183 (274)
                      ..+||||||.|.++..+|+  +...++|||+....+..|...+...++. |+.+++.|+..    ..++++.|-|+.++.
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            5899999999999999987  6779999999999999999999888753 89999999977    445558999987654


Q ss_pred             ccccChh-H------HHHHHHHHHhcccCCcEEEEEE
Q 024021          184 FCAIEPE-M------RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~-~------~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      =- ++.. .      ...+++.+.+.|+|||.+.+.+
T Consensus       129 DP-WpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         129 DP-WPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             CC-CCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence            22 2211 0      1578999999999999999876

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.86  E-value=5.6e-08  Score=79.53  Aligned_cols=137  Identities=14%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             HHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcce-EEEEcccCC----
Q 024021           98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT----  168 (274)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~-a~~~~~~~~~~~~~-~~~~~d~~~----  168 (274)
                      +..++...  ..++.+|||+|||+|.++..+++.|+ +|+++|+++.++.. .+++.       ++ .+...|+..    
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~  135 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPA  135 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHh
Confidence            44444433  24567999999999999999999865 89999999987765 32221       22 223333332    


Q ss_pred             -CC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------CCC-----CcccCHHHHHHH
Q 024021          169 -WC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------GGP-----PYKVSVSDYEEV  235 (274)
Q Consensus       169 -~~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------~~~-----~~~~~~~~~~~~  235 (274)
                       .. .-..+|+++++..          .++..+.++|+| |.+++..-+..+..      .|.     -+....+++...
T Consensus       136 ~~~~d~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~  204 (228)
T TIGR00478       136 DIFPDFATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK  204 (228)
T ss_pred             HcCCCceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence             11 1125676664332          346788999999 87776553322110      010     011235677788


Q ss_pred             HhcCCCcEEEEeecccc
Q 024021          236 LQPMGFQAISIVDNKLA  252 (274)
Q Consensus       236 l~~~Gf~~~~~~~~~~~  252 (274)
                      +.+.||.+..+...+..
T Consensus       205 ~~~~~~~~~~~~~s~i~  221 (228)
T TIGR00478       205 GESPDFQEKKIIFSLTK  221 (228)
T ss_pred             HHcCCCeEeeEEECCCC
Confidence            88899999888775443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=7.5e-08  Score=85.97  Aligned_cols=126  Identities=20%  Similarity=0.216  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~  183 (274)
                      ++.++||+=||.|.+++.+++...+|+|+|+++++++.|+++++.++..+ ++|..++..+..+    ...+|.|+....
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP  371 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP  371 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence            44799999999999999999999999999999999999999999998765 9999999988332    247899996544


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      =..++    ..+++.+.+ ++|-.++++.+.+.           |...-...|...||.+.++...+
T Consensus       372 R~G~~----~~~lk~l~~-~~p~~IvYVSCNP~-----------TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         372 RAGAD----REVLKQLAK-LKPKRIVYVSCNPA-----------TLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             CCCCC----HHHHHHHHh-cCCCcEEEEeCCHH-----------HHHHHHHHHHhCCeEEEEEEEec
Confidence            33332    245555555 78888999988444           56666778888899877776543

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.84  E-value=2.9e-08  Score=83.40  Aligned_cols=86  Identities=12%  Similarity=0.076  Sum_probs=68.3

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      .+..+++... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....   ++++++.+|+.+... ..|
T Consensus        17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~~~   92 (258)
T PRK14896         17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-PEF   92 (258)
T ss_pred             HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-hhc
Confidence            3444444333 35679999999999999999998889999999999999999887542   579999999987432 348


Q ss_pred             eEEEecccccc
Q 024021          176 DLIFDYTFFCA  186 (274)
Q Consensus       176 D~v~~~~~~~~  186 (274)
                      |.|+++..++.
T Consensus        93 d~Vv~NlPy~i  103 (258)
T PRK14896         93 NKVVSNLPYQI  103 (258)
T ss_pred             eEEEEcCCccc
Confidence            99999888653

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.84  E-value=8.1e-08  Score=81.29  Aligned_cols=85  Identities=15%  Similarity=0.101  Sum_probs=65.7

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-  174 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-  174 (274)
                      .+..+++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    ++++++.+|+.+.....- 
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~  105 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ  105 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence            3444554433 3557999999999999999998777999999999999999987642    479999999987533221 


Q ss_pred             eeEEEeccccc
Q 024021          175 FDLIFDYTFFC  185 (274)
Q Consensus       175 ~D~v~~~~~~~  185 (274)
                      +|.|+++..+.
T Consensus       106 ~~~vv~NlPY~  116 (272)
T PRK00274        106 PLKVVANLPYN  116 (272)
T ss_pred             cceEEEeCCcc
Confidence            58888876654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.84  E-value=4e-08  Score=77.79  Aligned_cols=128  Identities=19%  Similarity=0.268  Sum_probs=96.5

Q ss_pred             CeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+++|+|+|.|.-++.++  .+..+++.+|....-+...+......++. |++++.+.+.+.....+||+|++..+-.  
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~--  126 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAP--  126 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred             ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcC--
Confidence            389999999998887654  58889999999999999998888777774 6999999988755667899999988743  


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                          ...+++-+...+++||.+++.-        |+...-..++....++..|.+...+.....+
T Consensus       127 ----l~~l~~~~~~~l~~~G~~l~~K--------G~~~~~El~~~~~~~~~~~~~~~~v~~~~~~  179 (184)
T PF02527_consen  127 ----LDKLLELARPLLKPGGRLLAYK--------GPDAEEELEEAKKAWKKLGLKVLSVPEFELP  179 (184)
T ss_dssp             ----HHHHHHHHGGGEEEEEEEEEEE--------SS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred             ----HHHHHHHHHHhcCCCCEEEEEc--------CCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence                2467788999999999998876        3333324566677778888888777665443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.83  E-value=1e-07  Score=74.66  Aligned_cols=108  Identities=21%  Similarity=0.129  Sum_probs=83.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~  181 (274)
                      ..+.++||+-+|+|.++...+.+|+ .++.+|.+..++...++|....+...++.++..|....    ...++||+|+..
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            5678999999999999999999887 89999999999999999998887778899999998852    222359999998


Q ss_pred             ccccc-cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+++. +-+.......-.-..+|+|+|.+++...
T Consensus       122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            88772 1111111112224578999999988663

>PRK04148 hypothetical protein; Provisional

Probab=98.83  E-value=5.4e-08  Score=72.32  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCcch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~  184 (274)
                      ++.++||+|||+|. .+..|++.|..|+++|+++.+++.++++.        ++++.+|++++..  -..+|+|++... 
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp-   86 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP-   86 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence            35789999999996 88888889999999999999999998774        7899999998543  367999997544 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                          +.++...+-++.+.+  |.-+++...+.
T Consensus        87 ----p~el~~~~~~la~~~--~~~~~i~~l~~  112 (134)
T PRK04148         87 ----PRDLQPFILELAKKI--NVPLIIKPLSG  112 (134)
T ss_pred             ----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence                233344445555544  34466655444

>PLN02823 spermine synthase

Probab=98.83  E-value=4.4e-08  Score=84.78  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      .+.+||.+|+|.|..+..+++ . ..+++.+|+++++++.|++.++...   ..++++++.+|..+.  ...++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            457999999999999998877 3 3589999999999999999886432   247899999999883  23468999997


Q ss_pred             ccccccc---Chh--HHHHHHH-HHHhcccCCcEEEEEE
Q 024021          181 YTFFCAI---EPE--MRAAWAQ-KIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~---~~~--~~~~~l~-~~~~~L~pgG~~~~~~  213 (274)
                      ... ...   +..  ....+++ .+.+.|+|||++++..
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            632 111   110  1246777 8899999999987643

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=9e-08  Score=82.22  Aligned_cols=130  Identities=15%  Similarity=0.057  Sum_probs=104.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~  184 (274)
                      .++.+|||.-||.|.+++.+++.|.. |+++|++|.++...++++..++..+.+..+.+|.....+. +.+|-|+...+-
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            44789999999999999999997774 9999999999999999999999888899999999986555 789999976553


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      .      ...++....+.+++||.+-..++...+....    ....++.......|++....
T Consensus       267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----~~~~~i~~~~~~~~~~~~v~  318 (341)
T COG2520         267 S------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE----RPEKRIKSAARKGGYKVEVL  318 (341)
T ss_pred             c------chhhHHHHHHHhhcCcEEEEEeccchhhccc----chHHHHHHHHhhccCcceEE
Confidence            2      2457788889999999998888766543221    24577888888887655443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.80  E-value=1.1e-07  Score=79.65  Aligned_cols=87  Identities=15%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      ...+..+++... .++.+|||+|||+|.++..+++.+..++++|+++.+++.++.+...   ..+++++.+|+.+.... 
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence            334455555443 3457999999999999999999888899999999999999988743   25799999999874432 


Q ss_pred             Cee---EEEeccccc
Q 024021          174 LFD---LIFDYTFFC  185 (274)
Q Consensus       174 ~~D---~v~~~~~~~  185 (274)
                      .+|   +|+++..++
T Consensus        91 ~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        91 DFPKQLKVVSNLPYN  105 (253)
T ss_pred             HcCCcceEEEcCChh
Confidence            466   777765544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.79  E-value=1e-07  Score=76.02  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=91.1

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEEEeccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~D~v~~~~~~~  185 (274)
                      .++|||||=+..+...- ..-..|+.||+++.                ...+.+.|+.+ +.   +.++||+|.++.++.
T Consensus        53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCcccc-cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            59999999765544332 13347999999763                35578888887 33   356899999999999


Q ss_pred             ccCh-hHHHHHHHHHHhcccCCcE-----EEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEP-EMRAAWAQKIKDFLKPDGE-----LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~pgG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++|. ..+-.++.++.+.|+|+|.     ++++......   .....++.+.+.++|+..||..++.+.
T Consensus       116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---~NSRy~~~~~l~~im~~LGf~~~~~~~  181 (219)
T PF11968_consen  116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---TNSRYMTEERLREIMESLGFTRVKYKK  181 (219)
T ss_pred             eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---hcccccCHHHHHHHHHhCCcEEEEEEe
Confidence            9974 5788999999999999999     8887654432   122335889999999999999988754

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.3e-07  Score=77.29  Aligned_cols=135  Identities=21%  Similarity=0.158  Sum_probs=99.4

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP  171 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~  171 (274)
                      +..+++  ..|+.+|+|-|+|+|.++.++++   +-.+++.+|+.....+.|.+.+...++.+++++.+-|+...   ..
T Consensus        97 I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k  174 (314)
T KOG2915|consen   97 ILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK  174 (314)
T ss_pred             HHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence            444444  46778999999999999999988   44699999999999999999999999999999999999872   22


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ...+|.|+..       -+.....+..+.++|+.+|. .++.|++.-        --.+.-.+.|.+.||..+...+..
T Consensus       175 s~~aDaVFLD-------lPaPw~AiPha~~~lk~~g~-r~csFSPCI--------EQvqrtce~l~~~gf~~i~~vEv~  237 (314)
T KOG2915|consen  175 SLKADAVFLD-------LPAPWEAIPHAAKILKDEGG-RLCSFSPCI--------EQVQRTCEALRSLGFIEIETVEVL  237 (314)
T ss_pred             ccccceEEEc-------CCChhhhhhhhHHHhhhcCc-eEEeccHHH--------HHHHHHHHHHHhCCCceEEEEEee
Confidence            4679999842       22334567778888988774 222332221        124456677888899887765543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.74  E-value=1.1e-07  Score=80.37  Aligned_cols=139  Identities=14%  Similarity=0.127  Sum_probs=95.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ...+.+|||+|||+|..+-.+.+   .-.+++++|.|+.+++.++....................+..+..+.|+|++++
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~  110 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY  110 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence            34568999999999977655544   234899999999999999987755421111111111111122223349999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      ++.-++...+..+++.+.+.+.+  .+++++.+....      +-...+.++.+.+.|+.++--+.....
T Consensus       111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G------f~~i~~aR~~l~~~~~~v~APCph~~~  172 (274)
T PF09243_consen  111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG------FRRIAEARDQLLEKGAHVVAPCPHDGP  172 (274)
T ss_pred             hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH------HHHHHHHHHHHhhCCCceECCCccCCC
Confidence            99999878888899999888876  888887544321      124678888888889888776665433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.73  E-value=7e-07  Score=76.68  Aligned_cols=105  Identities=10%  Similarity=-0.034  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCC---CC----CC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTW---CP----TE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~---~~----~~  173 (274)
                      ++..++|+|||.|.=+..|++      ....++++|+|.++++.+..++. ..--.-.+.-+.+|+.+.   .+    ..
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            446899999999987655443      34689999999999999999887 332112344488888662   21    23


Q ss_pred             CeeEEEecc-cccccChhHHHHHHHHHHh-cccCCcEEEEE
Q 024021          174 LFDLIFDYT-FFCAIEPEMRAAWAQKIKD-FLKPDGELITL  212 (274)
Q Consensus       174 ~~D~v~~~~-~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~  212 (274)
                      ...+++..+ .++.++++....+++.+++ .|+|||.+++.
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            456777664 8899988888899999999 99999998883

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.73  E-value=1.4e-07  Score=78.53  Aligned_cols=129  Identities=18%  Similarity=0.095  Sum_probs=89.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCC-CeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTE-LFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~-~~D~v  178 (274)
                      ..+.+||=||.|.|..+..+.+.  ..+++++|+++.+++.|++.++...   ..++++++.+|....  ...+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            35789999999999999999883  3599999999999999999776421   246899999999872  2233 89999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      +....-...+..  ....+++.+.+.|+|||++++...+....      .-....+.+.++....
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~------~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH------PELFKSILKTLRSVFP  213 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT------HHHHHHHHHHHHTTSS
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc------hHHHHHHHHHHHHhCC
Confidence            974332111111  13578899999999999999876322111      0124556677777755

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.71  E-value=1.2e-08  Score=90.35  Aligned_cols=132  Identities=12%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEE---eCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGL---EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      ..+||+|||+|.++.+|.+.+..+..+   |..+.++++|.++.-..     +--+.+.-.-+.|.+.||+|.|+.++..
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa-----~~~~~~s~rLPfp~~~fDmvHcsrc~i~  193 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA-----MIGVLGSQRLPFPSNAFDMVHCSRCLIP  193 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch-----hhhhhccccccCCccchhhhhccccccc
Confidence            588999999999999999987654443   34455666665553111     1111122222778899999999998877


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +.... -.++-++.|+|+|||++++...+.... ......-....+.++.+..-|+.+....
T Consensus       194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r-~~~~~~~~~~~~~~l~~~lCW~~va~~~  253 (506)
T PF03141_consen  194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQR-TDEDLEEEWNAMEDLAKSLCWKKVAEKG  253 (506)
T ss_pred             chhcc-cceeehhhhhhccCceEEecCCccccc-chHHHHHHHHHHHHHHHHHHHHHheeeC
Confidence            75433 357889999999999999876554311 0000111345566666666666655444

; GO: 0008168 methyltransferase activity

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=3.3e-08  Score=73.20  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~  183 (274)
                      +..+++++|+|||+|.+.....-.+. .|.|+|++|++++.+.+|.++..+  +++++++|+.++.+ .+.||.++.+..
T Consensus        46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp  123 (185)
T KOG3420|consen   46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP  123 (185)
T ss_pred             cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence            46789999999999999977777655 899999999999999999987653  47999999998544 367999999988


Q ss_pred             ccc
Q 024021          184 FCA  186 (274)
Q Consensus       184 ~~~  186 (274)
                      |+-
T Consensus       124 FGT  126 (185)
T KOG3420|consen  124 FGT  126 (185)
T ss_pred             CCc
Confidence            764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.65  E-value=8.9e-08  Score=84.49  Aligned_cols=98  Identities=14%  Similarity=0.015  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~  185 (274)
                      +.+|||++||+|..++.++. .+ ..|+++|+++.+++.+++++..++.. ++++..+|+..... .+.||+|+.... .
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-G  135 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-G  135 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC-C
Confidence            35899999999999998876 34 38999999999999999999887653 57789999876443 467999997643 2


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                       .+    ..+++...+.+++||++++..
T Consensus       136 -s~----~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        136 -SP----APFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             -Cc----HHHHHHHHHHhcCCCEEEEEe
Confidence             22    356777777789999999974

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.65  E-value=2.6e-07  Score=75.61  Aligned_cols=88  Identities=22%  Similarity=0.231  Sum_probs=72.7

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      +.+++... ..++..|||+|.|||.++..+.+.|..|+++|++|.++....+++.....+.+.+++.+|+.+... ..||
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd  125 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFD  125 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccc
Confidence            33444433 345689999999999999999999999999999999999999999887777899999999998542 2489


Q ss_pred             EEEecccccc
Q 024021          177 LIFDYTFFCA  186 (274)
Q Consensus       177 ~v~~~~~~~~  186 (274)
                      .++++-.+.-
T Consensus       126 ~cVsNlPyqI  135 (315)
T KOG0820|consen  126 GCVSNLPYQI  135 (315)
T ss_pred             eeeccCCccc
Confidence            9998766653

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.65  E-value=2.3e-07  Score=74.73  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             CCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-eeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~D~v~~~~~~~  185 (274)
                      +.+++|||+|.|.-+..++  .+..+++-+|....-+.+.+......++ +|++++++.+.+.....+ ||+|.+..+-.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva~  146 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAVAS  146 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehccc
Confidence            5799999999999988755  5777899999999999999888877766 569999999988655444 99999987743


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  255 (274)
                            ...+++-...++++||.+++.-+...        .-...+........|+.+..+.....+...
T Consensus       147 ------L~~l~e~~~pllk~~g~~~~~k~~~~--------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~  202 (215)
T COG0357         147 ------LNVLLELCLPLLKVGGGFLAYKGLAG--------KDELPEAEKAILPLGGQVEKVFSLTVPELD  202 (215)
T ss_pred             ------hHHHHHHHHHhcccCCcchhhhHHhh--------hhhHHHHHHHHHhhcCcEEEEEEeecCCCC
Confidence                  24567888999999998765442221        114567788888889999998887766654

>PRK00536 speE spermidine synthase; Provisional

Probab=98.62  E-value=1.1e-06  Score=73.21  Aligned_cols=122  Identities=14%  Similarity=0.027  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..+++||=+|.|.|..++.+++-..+|+.||+++++++.+++.++...   ..+|++++.. +. ....++||+|+.-..
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~-~~~~~~fDVIIvDs~  148 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL-DLDIKKYDLIICLQE  148 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh-hccCCcCCEEEEcCC
Confidence            446899999999999999999844599999999999999999766421   2467777752 22 222368999997643


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc--CHHHHHHHHhcCCCcEEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV--SVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +    +   ..+.+.+.+.|+|||+++.-.        +.++..  ....+.+.+++ .|..+..
T Consensus       149 ~----~---~~fy~~~~~~L~~~Gi~v~Qs--------~sp~~~~~~~~~i~~~l~~-~F~~v~~  197 (262)
T PRK00536        149 P----D---IHKIDGLKRMLKEDGVFISVA--------KHPLLEHVSMQNALKNMGD-FFSIAMP  197 (262)
T ss_pred             C----C---hHHHHHHHHhcCCCcEEEECC--------CCcccCHHHHHHHHHHHHh-hCCceEE
Confidence            2    1   356788999999999998854        223321  12445555555 5775443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.59  E-value=1.1e-06  Score=77.02  Aligned_cols=142  Identities=18%  Similarity=0.209  Sum_probs=85.3

Q ss_pred             hcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024021          103 QSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (274)
Q Consensus       103 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------  170 (274)
                      +.....+..|||+-||.|.++..++....+|+|+|.++++++.|+.++..++. .+++|+.++..+..            
T Consensus       191 ~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~  269 (352)
T PF05958_consen  191 EWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRL  269 (352)
T ss_dssp             HHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred             HHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhh
Confidence            33444445899999999999999999999999999999999999999998876 57999987654311            


Q ss_pred             -----CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          171 -----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       171 -----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                           ....+|+|+...+=..++    ..+++.+.+   +.-++++.+.+.           +...=...|.+ ||++..
T Consensus       270 ~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaRDl~~L~~-~y~~~~  330 (352)
T PF05958_consen  270 KGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLARDLKILKE-GYKLEK  330 (352)
T ss_dssp             GGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHHHHHHHHC-CEEEEE
T ss_pred             hhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHHHHHHHhh-cCEEEE
Confidence                 122689998544433333    234444433   345666766322           33333344554 999988


Q ss_pred             EeecccccCCccchhHHHHh
Q 024021          246 IVDNKLAIGPRKGREKLGRW  265 (274)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~  265 (274)
                      +...+. ++.-...|++.++
T Consensus       331 v~~~Dm-FP~T~HvE~v~lL  349 (352)
T PF05958_consen  331 VQPVDM-FPQTHHVETVALL  349 (352)
T ss_dssp             EEEE-S-STTSS--EEEEEE
T ss_pred             EEEeec-CCCCCcEEEEEEE
Confidence            776542 3333345554443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=7.6e-07  Score=73.66  Aligned_cols=86  Identities=13%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC--C
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE--L  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~  174 (274)
                      +...+.... .++..|||||+|.|.++..|++.+.+|+++|+++.+++..++.....   ++++++.+|+.+...+.  .
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhcC
Confidence            444444443 33579999999999999999999999999999999999999987633   67999999999855444  6


Q ss_pred             eeEEEecccccc
Q 024021          175 FDLIFDYTFFCA  186 (274)
Q Consensus       175 ~D~v~~~~~~~~  186 (274)
                      ++.|+++-.+.-
T Consensus        96 ~~~vVaNlPY~I  107 (259)
T COG0030          96 PYKVVANLPYNI  107 (259)
T ss_pred             CCEEEEcCCCcc
Confidence            889998877663

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=5.9e-07  Score=72.50  Aligned_cols=150  Identities=19%  Similarity=0.164  Sum_probs=102.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCCCC---CCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWCP---TELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~---~~~~D~v~~  180 (274)
                      ..++..+||+|+.||.++..+.+.|+ .|+++|....+++.--+.-      +++ .+...|+....+   .+..|++++
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~  150 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVI  150 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEE
Confidence            55678999999999999999999887 8999999887665544332      233 344456654222   236789998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------C----CCCcc-cCHHHHHHHHhcCCCcEEEEeec
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------G----GPPYK-VSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------~----~~~~~-~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      .-.|..+     ..++..+..+++|++.++...-+..+..      .    .+..+ ....++.+++++.||.+..+...
T Consensus       151 DvSFISL-----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S  225 (245)
T COG1189         151 DVSFISL-----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS  225 (245)
T ss_pred             EeehhhH-----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence            7666543     5678999999999999887664432210      0    11111 24578899999999999999884


Q ss_pred             ccccCCccchhHHHHhhhh
Q 024021          250 KLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~  268 (274)
                      +  +....++..+..|.+.
T Consensus       226 p--i~G~~GNiE~l~~~~k  242 (245)
T COG1189         226 P--IKGGKGNIEFLLLLKK  242 (245)
T ss_pred             C--ccCCCCcEeeeeeeec
Confidence            4  4444456666665543

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.58  E-value=9.2e-08  Score=75.83  Aligned_cols=98  Identities=19%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~  182 (274)
                      ....|+|.-||.|+.+.+.+..+..|+++|++|.-+..|+.+++..|..++++|+++|+.+..     ....+|+|+.+.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence            457899999999999999999999999999999999999999999999899999999998732     223477998887


Q ss_pred             cccccChhHHHHHHHHHHhcccCCc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDG  207 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG  207 (274)
                      .+..-  +....-+-.+...+.|.|
T Consensus       174 pwggp--~y~~~~~~DL~~~~~p~~  196 (263)
T KOG2730|consen  174 PWGGP--SYLRADVYDLETHLKPMG  196 (263)
T ss_pred             CCCCc--chhhhhhhhhhhhcchhH
Confidence            76653  222233344555555554

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.58  E-value=5.9e-07  Score=75.75  Aligned_cols=104  Identities=19%  Similarity=0.178  Sum_probs=81.8

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCCC--CCCCeeEEEecc
Q 024021          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~--~~~~~D~v~~~~  182 (274)
                      ++||-||.|.|..+..+.+.  -.+++.+|+++..++.+++.++...  . .+|++++.+|..+..  ..++||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999883  3599999999999999999887643  2 478999999998832  234799999754


Q ss_pred             cccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .-..-+.+  ....+++.+.++|+++|+++...
T Consensus       158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            42211101  12578899999999999999874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.58  E-value=4.4e-07  Score=83.20  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      ...+||||||.|.++..++.  +...++|+|+....+..+.......++ .|+.++..|+..   ..+.+++|.|+.+++
T Consensus       348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            46899999999999998887  677999999999999998888766665 468888887743   456778999997655


Q ss_pred             ccccChh-------HHHHHHHHHHhcccCCcEEEEEE
Q 024021          184 FCAIEPE-------MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~-------~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      =-+ +..       ....+++.+.+.|+|||.+.+.+
T Consensus       427 DPW-pKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 DPW-IKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             CCC-CCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            332 211       12578999999999999999876

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.57  E-value=1.6e-06  Score=72.43  Aligned_cols=146  Identities=22%  Similarity=0.230  Sum_probs=101.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCC-------------------------------
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLP-------------------------------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~---~~~~-------------------------------  154 (274)
                      ..+||-.|||.|.++..++..|..+-|-|+|--|+--..-.+   ...+                               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            368999999999999999998888888888766653221111   1110                               


Q ss_pred             -----CCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-----ccCCCC-
Q 024021          155 -----NAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-----FPISDH-  219 (274)
Q Consensus       155 -----~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~-----~~~~~~-  219 (274)
                           ..+...+..||+.+..+    .+.||+|+..+.+...  .+.-++++.+.++|+|||+++=..     +..... 
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~  308 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV  308 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC
Confidence                 11234446677776222    3469999988776654  566789999999999999987532     111111 


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCc
Q 024021          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPR  256 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  256 (274)
                      .......++.+++..+++..||++++-......+..-
T Consensus       309 ~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~n  345 (369)
T KOG2798|consen  309 ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTN  345 (369)
T ss_pred             cccccccccHHHHHHHHHhcCcEEEEeeeeecccCCC
Confidence            1122345789999999999999999988777666654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.51  E-value=1.4e-06  Score=75.44  Aligned_cols=107  Identities=17%  Similarity=0.248  Sum_probs=83.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-----------------------------------------eEEEEeCChHHHHH
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIKK  145 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-----------------------------------------~v~~vD~~~~~~~~  145 (274)
                      .++..++|.-||+|.+++..+..+.                                         .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            3446899999999999987765221                                         27799999999999


Q ss_pred             HHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccccc-cChh-----HHHHHHHHHHhcccCCcEEEEEE
Q 024021          146 AEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEPE-----MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       146 a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~~~-~~~~-----~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+.|....|+.+.++|.++|+..+.++ +.+|+|+++.++.- +..+     ..+.+.+.+.+.++--+..+++.
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            999999999999999999999985554 78999999998764 3222     23455566667777667776654

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.51  E-value=2e-06  Score=73.30  Aligned_cols=137  Identities=13%  Similarity=0.211  Sum_probs=97.5

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHh--hc-C--C-CCcceEEEEcccCCCC--CCCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELS--SS-L--P-NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~--~~-~--~-~~~~~~~~~~d~~~~~--~~~~~D~v~  179 (274)
                      .+||-+|.|.|.-+.++.+ ++. +++-+|++|++++.++.+.  .. +  . ..++++++..|.+++.  ..+.||.|+
T Consensus       291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI  370 (508)
T COG4262         291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI  370 (508)
T ss_pred             ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence            6999999999999999988 544 9999999999999998432  11 1  1 2478999999999843  345899999


Q ss_pred             eccc------ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          180 DYTF------FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       180 ~~~~------~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                      ....      +..+   ...++...+.+.|+++|.+++..-++...+.      .--.+.+.++++||.+...+.....+
T Consensus       371 VDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~------vfw~i~aTik~AG~~~~Pyhv~VPTF  441 (508)
T COG4262         371 VDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGSPYFTPR------VFWRIDATIKSAGYRVWPYHVHVPTF  441 (508)
T ss_pred             EeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCCCccCCc------eeeeehhHHHhCcceeeeeEEecCcc
Confidence            5322      1111   1246678889999999999987633322111      12356778899999887776655554


Q ss_pred             CC
Q 024021          254 GP  255 (274)
Q Consensus       254 ~~  255 (274)
                      ..
T Consensus       442 Ge  443 (508)
T COG4262         442 GE  443 (508)
T ss_pred             cc
Confidence            44

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.46  E-value=5.5e-06  Score=74.95  Aligned_cols=110  Identities=20%  Similarity=0.134  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      ..++.+|||++||.|.=+..++.   ....++++|+++..+...++++...+. .++.+...|....  ...+.||.|++
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEE
Confidence            45678999999999999988876   235899999999999999999998876 4588888887653  22457999995


Q ss_pred             ccc------ccccC-------hh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          181 YTF------FCAIE-------PE-------MRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~------~~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ...      +..-+       .+       ....+|....+.|+|||+++..+.+.
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            322      22111       11       12578899999999999998766543

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.46  E-value=2.4e-06  Score=70.81  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=82.9

Q ss_pred             CeEEEEcCCcc--hhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC---------C
Q 024021          110 GRALVPGCGTG--YDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP---------T  172 (274)
Q Consensus       110 ~~vLDiG~G~G--~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~---------~  172 (274)
                      ...||||||--  .+.-.+++   +.++|+-+|.+|-.+..++..+..... .+..++.+|+.++   ..         -
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~  148 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF  148 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence            68999999954  23334443   789999999999999999998866531 2489999999872   11         1


Q ss_pred             CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhc
Q 024021          173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~  238 (274)
                      .+.=.++...+++++++ +....++..+.+.|.||.++.+........             ...+.+.-+.+++.++|. 
T Consensus       149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-  227 (267)
T PF04672_consen  149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-  227 (267)
T ss_dssp             TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred             CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence            22336777889999866 577899999999999999999988765432             122223347888888887 


Q ss_pred             CCCcEEE
Q 024021          239 MGFQAIS  245 (274)
Q Consensus       239 ~Gf~~~~  245 (274)
                       ||++++
T Consensus       228 -g~elve  233 (267)
T PF04672_consen  228 -GLELVE  233 (267)
T ss_dssp             -TSEE-T
T ss_pred             -CCccCC
Confidence             787754

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.45  E-value=1.1e-06  Score=75.98  Aligned_cols=136  Identities=19%  Similarity=0.189  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCC---CC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCP---TE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~---~~  173 (274)
                      .++.+|+|.+||+|.++..+.+         ....++|+|+++.++..|+.++...+.. .+..+..+|......   ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            3446899999999999877765         4569999999999999998877555432 234688888876222   46


Q ss_pred             CeeEEEeccccccc--Ch-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021          174 LFDLIFDYTFFCAI--EP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       174 ~~D~v~~~~~~~~~--~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .||+|+++.++...  ..                 ..-..++..+.+.|++||++.++.....-...     .....+++
T Consensus       125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~-----~~~~~iR~  199 (311)
T PF02384_consen  125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS-----SSEKKIRK  199 (311)
T ss_dssp             -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS-----THHHHHHH
T ss_pred             ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc-----chHHHHHH
Confidence            89999999877644  11                 01135889999999999997776632210000     02356766


Q ss_pred             HHhcCCCcEEEEee
Q 024021          235 VLQPMGFQAISIVD  248 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~  248 (274)
                      .|-+.+ .+..+..
T Consensus       200 ~ll~~~-~i~aVI~  212 (311)
T PF02384_consen  200 YLLENG-YIEAVIS  212 (311)
T ss_dssp             HHHHHE-EEEEEEE
T ss_pred             HHHhhc-hhhEEee
Confidence            666543 3444444

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.44  E-value=2.9e-06  Score=80.98  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CC--------------------------------------CeEEEEeCChHHH
Q 024021          108 PKGRALVPGCGTGYDVVAMAS------PE--------------------------------------RYVVGLEISDIAI  143 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~--------------------------------------~~v~~vD~~~~~~  143 (274)
                      ++..++|.+||+|.+++..+.      +|                                      ..++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            457999999999999876643      11                                      2699999999999


Q ss_pred             HHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEeccccccc-C-hhHHHHHHHHHHhcc---cCCcEEEEEE
Q 024021          144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCAI-E-PEMRAAWAQKIKDFL---KPDGELITLM  213 (274)
Q Consensus       144 ~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~~-~-~~~~~~~l~~~~~~L---~pgG~~~~~~  213 (274)
                      +.|+.|+...++.+.++|..+|+.+...   .++||+|+++..+..- . ......+...+.+.+   .+|+.+++.+
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt  347 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS  347 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999999999888889999999987432   2469999999887642 2 123333333333333   4888877765

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.43  E-value=9e-07  Score=77.79  Aligned_cols=97  Identities=12%  Similarity=0.017  Sum_probs=79.0

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021          110 GRALVPGCGTGYDVVAMASP--ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~  184 (274)
                      .+|||+.||+|..++.++..  |. .|+++|+++.+++.+++|+..++.. ++.++..|+.....  ...||+|.... +
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            58999999999999988874  54 8999999999999999999877653 58899999887432  35799999755 4


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      + .+    ..+++.+.+.+++||+++++.
T Consensus       124 G-s~----~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 G-TP----APFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence            3 22    257888999999999999975

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.42  E-value=7.1e-06  Score=65.38  Aligned_cols=122  Identities=17%  Similarity=0.144  Sum_probs=85.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  173 (274)
                      ..++..|+|+|+..|.|+..+++   .+..|+++|+.|-         ...   +++.++++|++..         ....
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence            34568999999999999998887   3345999999763         111   4599999999872         2234


Q ss_pred             CeeEEEecccc--------ccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          174 LFDLIFDYTFF--------CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       174 ~~D~v~~~~~~--------~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++|+|++...-        +|. .-.....+++-...+|+|||.+++-.+-..          ..+++...++. .|..+
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------~~~~~l~~~~~-~F~~v  179 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------DFEDLLKALRR-LFRKV  179 (205)
T ss_pred             CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------CHHHHHHHHHH-hhcee
Confidence            57999975443        111 012234566777889999999999776553          45677777776 48887


Q ss_pred             EEeecc
Q 024021          245 SIVDNK  250 (274)
Q Consensus       245 ~~~~~~  250 (274)
                      ......
T Consensus       180 ~~~KP~  185 (205)
T COG0293         180 KIFKPK  185 (205)
T ss_pred             EEecCc
Confidence            776533

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.41  E-value=1.8e-06  Score=65.62  Aligned_cols=84  Identities=19%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCCCCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~D~v  178 (274)
                      .+..+|+|+|||.|+++..++.      .+.+|+++|.++..++.+..+....+  ...++.+..++..........+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            4457999999999999998877      57799999999999999998887665  445677777777654445678999


Q ss_pred             EecccccccChh
Q 024021          179 FDYTFFCAIEPE  190 (274)
Q Consensus       179 ~~~~~~~~~~~~  190 (274)
                      +..+.-..+.+.
T Consensus       104 vgLHaCG~Ls~~  115 (141)
T PF13679_consen  104 VGLHACGDLSDR  115 (141)
T ss_pred             EEeecccchHHH
Confidence            988877766543

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.38  E-value=8.2e-07  Score=70.53  Aligned_cols=119  Identities=20%  Similarity=0.256  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCC--CCC
Q 024021          109 KGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCP--TEL  174 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~--~~~  174 (274)
                      +.++||+||++|.++..+.+.+   .+|+|+|+.+.         ...   ..+.++.+|+.+         ...  .++
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence            4799999999999999999976   69999999876         110   235556666544         111  258


Q ss_pred             eeEEEecccccccC-----h----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFCAIE-----P----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~~~~-----~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +|+|++......-.     .    ......+.-+.+.|+|||.+++-.+...          ...++...++. .|+.+.
T Consensus        92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~----------~~~~~~~~l~~-~F~~v~  160 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP----------EIEELIYLLKR-CFSKVK  160 (181)
T ss_dssp             ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST----------TSHHHHHHHHH-HHHHEE
T ss_pred             cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc----------cHHHHHHHHHh-CCeEEE
Confidence            99999977432211     1    2223445566678999999988776532          12377777776 687776


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       161 ~~Kp~  165 (181)
T PF01728_consen  161 IVKPP  165 (181)
T ss_dssp             EEE-T
T ss_pred             EEECc
Confidence            66533

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.37  E-value=4.6e-07  Score=78.99  Aligned_cols=109  Identities=24%  Similarity=0.232  Sum_probs=93.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  183 (274)
                      -.++..++|+|||.|....++.. .+..++|+|.++..+..+........+.++..++.+|+.+ +.+++.||.+.+..+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            34556899999999999999988 6679999999999999988887776666778888889988 677889999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      .+|.+.  ...++.++.++++|||+++..++..
T Consensus       188 ~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  188 VCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             cccCCc--HHHHHHHHhcccCCCceEEeHHHHH
Confidence            999864  4678999999999999999866543

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.35  E-value=3.3e-06  Score=66.01  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=86.4

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhh
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~  151 (274)
                      ..+|.-.|..+.          .+.+++...  ...+++|||+|+|+|..++..++.|+ .|+..|+.|......+-|..
T Consensus        54 Ppfwa~~WagG~----------~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~  123 (218)
T COG3897          54 PPFWAFAWAGGQ----------VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA  123 (218)
T ss_pred             chHHHHHHhhhH----------HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence            346766665432          244555433  24568999999999999999999887 89999999998888888888


Q ss_pred             cCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       152 ~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      .++  ..+.+...|..-  .+..||++++..++..-  ..-..++. ....++..|..++
T Consensus       124 ang--v~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         124 ANG--VSILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             hcc--ceeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence            877  358888888765  45679999999887643  33445666 5555555555444

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.33  E-value=9.9e-07  Score=68.37  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      ...+.|+|+|+|.++...++..-+|++++.+|.....|.+++...+. +++.++.+|...... +..|+|+|-..=-.+-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi  110 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI  110 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence            37899999999999999988867999999999999999999766654 679999999988554 5679999754322222


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      .+....++..+.+.|+.++.++-
T Consensus       111 ~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         111 EEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             cccccHHHHHHHHHhhcCCcccc
Confidence            23345678888889999988764

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.31  E-value=1.6e-06  Score=64.90  Aligned_cols=117  Identities=15%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccccccCh---------hHHHHHHHHH
Q 024021          132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI  199 (274)
Q Consensus       132 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~~---------~~~~~~l~~~  199 (274)
                      +|+++|+-+++++..++++...+..++++++..+-.+   ..+.+++|+++.+  ++++|.         +..-..++.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5899999999999999999998887889999987766   2333589999854  455543         2345788999


Q ss_pred             HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          200 KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       200 ~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      .++|+|||++.++.+.....  |..-.-...++.+-+....|.+.........
T Consensus        79 l~lL~~gG~i~iv~Y~GH~g--G~eE~~av~~~~~~L~~~~~~V~~~~~~N~~  129 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHPG--GKEESEAVEEFLASLDQKEFNVLKYQFINQK  129 (140)
T ss_dssp             HHHEEEEEEEEEEE--STCH--HHHHHHHHHHHHHTS-TTTEEEEEEEESS-S
T ss_pred             HHhhccCCEEEEEEeCCCCC--CHHHHHHHHHHHHhCCcceEEEEEEEccCCC
Confidence            99999999999999865321  0000012334444444556887776654443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.31  E-value=1.4e-05  Score=64.18  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=88.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  179 (274)
                      .++.+||-+|+.+|.....++.   +...|+++|+++......-......   +|+--+.+|+..+.    .-+.+|+|+
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~  148 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIF  148 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEE
Confidence            4568999999999999888776   5779999999996554444433332   57888999998732    235899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +.-.    .+++..-++..+...||+||.+++..-...-.....+-. -..+-.+.|++.||+..+.....
T Consensus       149 ~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~-vf~~e~~~L~~~~~~~~e~i~Le  214 (229)
T PF01269_consen  149 QDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE-VFAEEVKKLKEEGFKPLEQITLE  214 (229)
T ss_dssp             EE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH-HHHHHHHHHHCTTCEEEEEEE-T
T ss_pred             ecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH-HHHHHHHHHHHcCCChheEeccC
Confidence            6322    235667788889999999999988764322111111111 12333456677799998776643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.31  E-value=2.3e-06  Score=72.64  Aligned_cols=72  Identities=15%  Similarity=0.115  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCC--CeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTE--LFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~--~~D~v  178 (274)
                      .++..++|++||.|..+..+++.   ..+|+|+|.++++++.|++++..   .++++++++|+.+.   .+.+  ++|.|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI   94 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI   94 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence            45679999999999999999873   47999999999999999988755   36899999999872   2222  79999


Q ss_pred             Eec
Q 024021          179 FDY  181 (274)
Q Consensus       179 ~~~  181 (274)
                      ++.
T Consensus        95 l~D   97 (296)
T PRK00050         95 LLD   97 (296)
T ss_pred             EEC
Confidence            975

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.29  E-value=2.2e-06  Score=71.77  Aligned_cols=104  Identities=20%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024021          109 KGRALVPGCGTGYDV-VAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~-~~l~~---~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~  182 (274)
                      +.+|+=||||.=-++ +.+++   .+..++++|+++++++.+++.+. ..++..+++|+.+|..... .-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            359999999975554 45554   46789999999999999999887 4456678999999997643 335799999776


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..+ ++.+...++++++.+.++||..+++-.
T Consensus       201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  201 LVG-MDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             T-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence            655 233455789999999999999888753

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.27  E-value=1.6e-05  Score=73.71  Aligned_cols=78  Identities=18%  Similarity=0.309  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC--C--------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----C--CCC
Q 024021          109 KGRALVPGCGTGYDVVAMAS--P--------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPT  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~--~~~  172 (274)
                      ..+|||.|||+|.++..+++  .        ...++|+|+++.++..++.++...+. ....+...|...    .  ...
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence            45899999999999987765  1        14799999999999999988765531 224555555432    1  112


Q ss_pred             CCeeEEEeccccccc
Q 024021          173 ELFDLIFDYTFFCAI  187 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~  187 (274)
                      +.||+|+++.++...
T Consensus       111 ~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       111 DLFDIVITNPPYGRL  125 (524)
T ss_pred             CcccEEEeCCCcccc
Confidence            579999999988754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=3.2e-05  Score=67.89  Aligned_cols=133  Identities=20%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC-CCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~-~~~D~  177 (274)
                      ..++.+|||+.++.|.=+..++.    .+..|+++|.++.-+...++++...|..+ +.....|...   ..+. ++||.
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence            56678999999999998877776    35678999999999999999999988754 7777777654   2222 35999


Q ss_pred             EEeccc------ccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024021          178 IFDYTF------FCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       178 v~~~~~------~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (274)
                      |++...      +..=|+       .       ....+|....+.|||||.++..+.+....       -+.+.+...++
T Consensus       233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------ENE~vV~~~L~  305 (355)
T COG0144         233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------ENEEVVERFLE  305 (355)
T ss_pred             EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------cCHHHHHHHHH
Confidence            997432      211011       1       12588899999999999999877655322       14556667777


Q ss_pred             cC-CCcEEEE
Q 024021          238 PM-GFQAISI  246 (274)
Q Consensus       238 ~~-Gf~~~~~  246 (274)
                      +. +|+.+..
T Consensus       306 ~~~~~~~~~~  315 (355)
T COG0144         306 RHPDFELEPV  315 (355)
T ss_pred             hCCCceeecc
Confidence            75 5666554

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=1.9e-06  Score=71.31  Aligned_cols=113  Identities=18%  Similarity=0.287  Sum_probs=88.0

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~  173 (274)
                      -+.+.+++..... +..++|+|||.|..+..  .+...++|.|++...+..++..-       ....+.+|+.+ +....
T Consensus        33 Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~~  102 (293)
T KOG1331|consen   33 WPMVRQFLDSQPT-GSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFREE  102 (293)
T ss_pred             cHHHHHHHhccCC-cceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCCC
Confidence            4567777775433 67999999999876532  26668999999988877776543       12577888888 66677


Q ss_pred             CeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          174 LFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      +||.+++..+++|+.. ..+..+++++.++++|||..++..++..
T Consensus       103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~  147 (293)
T KOG1331|consen  103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE  147 (293)
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence            9999999999999864 4567899999999999999888777654

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.25  E-value=5.7e-06  Score=66.71  Aligned_cols=113  Identities=22%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEEc
Q 024021           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLKA  164 (274)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~  164 (274)
                      ..+..++..... ++...+|+|||.|....+.+. .++ +.+|||+.+...+.|+....       ..+. ..++++..+
T Consensus        29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g  108 (205)
T PF08123_consen   29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG  108 (205)
T ss_dssp             HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred             HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence            345555555543 457999999999999887765 455 69999999998888765332       2222 356888999


Q ss_pred             ccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          165 DFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       165 d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      |+.+...    -...|+|++++..  ++++. ...+.++...||+|.+++.
T Consensus       109 dfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  109 DFLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIIS  156 (205)
T ss_dssp             -TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEE
T ss_pred             CccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEE
Confidence            9886221    1357999998774  34444 3455777778999988765

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.25  E-value=3.6e-05  Score=61.56  Aligned_cols=122  Identities=13%  Similarity=0.018  Sum_probs=94.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      +.++.||||-.|++..++.+.+  -.+++.|+++..++.|.+++...++.++++...+|.... .+...+|+|+..++-.
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG   96 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG   96 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence            4459999999999999998844  489999999999999999999999999999999999874 4445899998766644


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      .    ....++++-.+.|+.=-++++.- .           .....+++++..++|.++.-
T Consensus        97 ~----lI~~ILee~~~~l~~~~rlILQP-n-----------~~~~~LR~~L~~~~~~I~~E  141 (226)
T COG2384          97 T----LIREILEEGKEKLKGVERLILQP-N-----------IHTYELREWLSANSYEIKAE  141 (226)
T ss_pred             H----HHHHHHHHhhhhhcCcceEEECC-C-----------CCHHHHHHHHHhCCceeeee
Confidence            3    34566666666666333444421 0           15789999999999998763

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.21  E-value=3.8e-05  Score=58.63  Aligned_cols=102  Identities=25%  Similarity=0.344  Sum_probs=70.0

Q ss_pred             EEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCC--CCeeEEEeccccc
Q 024021          112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPT--ELFDLIFDYTFFC  185 (274)
Q Consensus       112 vLDiG~G~G~~~--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~--~~~D~v~~~~~~~  185 (274)
                      ++|+|||+|...  ..+...+..++++|+++.++..++..... .....+.+...|...  ....  ..||++......+
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999965  33322335899999999999985555432 211116778887765  2222  3799994444444


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      +..   ....+..+.+.++|+|.+++......
T Consensus       131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            443   46788999999999999988776543

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.19  E-value=1.9e-05  Score=70.19  Aligned_cols=107  Identities=15%  Similarity=0.233  Sum_probs=87.3

Q ss_pred             CCCC-eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021          107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  183 (274)
                      .+.. ++|-+|||...+...+.+.|. .|+.+|+|+..++.........  ..-..+...|... .+++++||+|+.-+.
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt  123 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT  123 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence            3444 999999999999999998887 7999999999999888776422  2458889999988 677899999999999


Q ss_pred             ccccChh--------HHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          184 FCAIEPE--------MRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~--------~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      ++++..+        .....+..+++++++||+.+.+...
T Consensus       124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            8886321        2356789999999999998887774

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.15  E-value=9.5e-06  Score=69.47  Aligned_cols=86  Identities=19%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~  185 (274)
                      .++.++||+||++|.++..+++.|.+|++||..+- ...    +..   .++|+....|.+...+ .+.+|+++|..+..
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~~~----L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~  281 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-AQS----LMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK  281 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-CHh----hhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence            46789999999999999999999999999996542 111    111   2579999999888554 67899999866632


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pg  206 (274)
                            ...+.+.+.+++..|
T Consensus       282 ------P~rva~lm~~Wl~~g  296 (357)
T PRK11760        282 ------PARVAELMAQWLVNG  296 (357)
T ss_pred             ------HHHHHHHHHHHHhcC
Confidence                  235667777888766

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=6.4e-05  Score=59.24  Aligned_cols=135  Identities=20%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  180 (274)
                      .++.+||-+|+.+|.....++.  ....++++|+++......-..+...   +|+--+.+|+..+.    .-+.+|+|+.
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEE
Confidence            4568999999999999988877  3468999999998776666655543   56778889988642    2356899984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      .-    ..+.+..-+...+...|++||.+++..-...-.....+-..-.+++ +.|++.||++.+....
T Consensus       152 DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev-~kL~~~~f~i~e~~~L  215 (231)
T COG1889         152 DV----AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEV-EKLEEGGFEILEVVDL  215 (231)
T ss_pred             ec----CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHH-HHHHhcCceeeEEecc
Confidence            21    1335667788899999999998777654433222222222223344 3455668998887654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=5.6e-06  Score=62.69  Aligned_cols=133  Identities=17%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCcchhH-HHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC---CCCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDV-VAMAS--PERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~-~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~---~~~~~~~D~v~  179 (274)
                      .+.+|||+|.|--.++ ..++.  +...|...|-+.+.+...++....+..  -.++..+.-+...   .....+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            3578999999865554 34443  667999999999999888876654411  1223333333322   33456899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +..++..  ++....+++.|..+|+|.|..++....         ..-+.+.+.+.....||.+...+.+..
T Consensus       109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR---------Rg~sL~kF~de~~~~gf~v~l~enyde  169 (201)
T KOG3201|consen  109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR---------RGQSLQKFLDEVGTVGFTVCLEENYDE  169 (201)
T ss_pred             eccchhH--HHHHHHHHHHHHHHhCcccceeEecCc---------ccchHHHHHHHHHhceeEEEecccHhH
Confidence            9887653  366788999999999999997665422         223789999999999999877666543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.10  E-value=2.2e-05  Score=66.09  Aligned_cols=100  Identities=18%  Similarity=0.184  Sum_probs=72.0

Q ss_pred             HHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC---
Q 024021           98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE---  173 (274)
Q Consensus        98 ~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---  173 (274)
                      ...+++.... ++..|||+|+|+|.++..|++.+.+++++|.++..++..++.....   ++++++.+|+.+.....   
T Consensus        19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHCS
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhhc
Confidence            3334443333 5689999999999999999998899999999999999999987633   67999999999844333   


Q ss_pred             -CeeEEEecccccccChhHHHHHHHHHHhcccC
Q 024021          174 -LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP  205 (274)
Q Consensus       174 -~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p  205 (274)
                       ....|+++..+ ++.    ..++.++...-+.
T Consensus        96 ~~~~~vv~NlPy-~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   96 NQPLLVVGNLPY-NIS----SPILRKLLELYRF  123 (262)
T ss_dssp             SSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred             CCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence             56677776655 343    2345555553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.09  E-value=3.9e-05  Score=61.01  Aligned_cols=115  Identities=22%  Similarity=0.230  Sum_probs=84.4

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~  170 (274)
                      .+.+....+....++++||++|-|-|.....+.+ +..+=+.+|..|..+...+.......  .+|.++.+-..+   ..
T Consensus        88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L  165 (271)
T KOG1709|consen   88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL  165 (271)
T ss_pred             hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence            3444444444446689999999999999988877 34467789999999999988775543  568777775544   56


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +++.||-|+-.-.-.+.  ++...+.+.+.++|||+|++-...
T Consensus       166 ~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             cccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence            77889999843322222  456778889999999999876644

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.07  E-value=4.7e-05  Score=59.55  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=92.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChH----------HHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDI----------AIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~----------~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  172 (274)
                      ..++.+|+|+=.|.|.++..++.   +...|+++-..+.          +-..+++.     ...|++.+..+.....+.
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-----~~aN~e~~~~~~~A~~~p  120 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-----VYANVEVIGKPLVALGAP  120 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-----hhhhhhhhCCcccccCCC
Confidence            45678999999999999998877   2236666543322          11111111     123456666666665567


Q ss_pred             CCeeEEEeccccccc-----ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcE
Q 024021          173 ELFDLIFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      +..|+++.....+.+     +......+...+.+.|||||.+++.++...-.    ....-...+...+.+..+.+||..
T Consensus       121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl  200 (238)
T COG4798         121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKL  200 (238)
T ss_pred             CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhccee
Confidence            778888876555543     34556788899999999999999988755321    112233468889999999999998


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      .--..
T Consensus       201 ~aeS~  205 (238)
T COG4798         201 EAESE  205 (238)
T ss_pred             eeeeh
Confidence            76544

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.05  E-value=1.7e-06  Score=68.09  Aligned_cols=132  Identities=18%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +.++||+|+|.|..+..++..--+|++.|+|..|....+...-.-  -..++..+.       +-+||+|.|.+++....
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynV--l~~~ew~~t-------~~k~dli~clNlLDRc~  183 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNV--LTEIEWLQT-------DVKLDLILCLNLLDRCF  183 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCce--eeehhhhhc-------CceeehHHHHHHHHhhc
Confidence            479999999999999988765557999999999998887653110  001112222       23699999998887653


Q ss_pred             hhHHHHHHHHHHhcccC-CcEEEEEEc---------cCCCC---------CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          189 PEMRAAWAQKIKDFLKP-DGELITLMF---------PISDH---------VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~p-gG~~~~~~~---------~~~~~---------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +  .-.+++.++.+|+| +|.+++..-         +....         ..|..+.-....+.++++.+||.+......
T Consensus       184 ~--p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl  261 (288)
T KOG3987|consen  184 D--PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL  261 (288)
T ss_pred             C--hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence            2  24789999999999 787665321         11111         112222223456778899999998665554


Q ss_pred             cc
Q 024021          250 KL  251 (274)
Q Consensus       250 ~~  251 (274)
                      ++
T Consensus       262 PY  263 (288)
T KOG3987|consen  262 PY  263 (288)
T ss_pred             Ce
Confidence            43

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.02  E-value=2.2e-05  Score=66.50  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=50.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcc----cCC--CCCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FFT--WCPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d----~~~--~~~~~~~D~v~~  180 (274)
                      -++||||||....-..|..  .+++++|.|+++..++.|++++..+ ++..+|+++...    ++.  ..+.+.||+.+|
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence            5899999999876544433  6889999999999999999999988 888889987653    332  123358999999


Q ss_pred             cccccccCh
Q 024021          181 YTFFCAIEP  189 (274)
Q Consensus       181 ~~~~~~~~~  189 (274)
                      +..|+.-.+
T Consensus       184 NPPFy~s~~  192 (299)
T PF05971_consen  184 NPPFYSSQE  192 (299)
T ss_dssp             -----SS--
T ss_pred             CCccccChh
Confidence            999886543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.98  E-value=0.00098  Score=54.45  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=87.5

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCee
Q 024021          101 LHQSGALPKGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD  176 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D  176 (274)
                      +.+...+.+++||-+|=..-... ..+.....+|+.+|+++..++..++.....++.  ++....|+.++.|.   ++||
T Consensus        37 ~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD  114 (243)
T PF01861_consen   37 MAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFD  114 (243)
T ss_dssp             HHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BS
T ss_pred             HHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCC
Confidence            33445678899999984443222 233346679999999999999999998887753  99999999996654   6899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPR  256 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~  256 (274)
                      ++++..+.-   .+-..-++.+....|+.-|-.....++..+.    + .....++++.+.+.||.+..+...--.+.+.
T Consensus       115 ~f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~----s-~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga  186 (243)
T PF01861_consen  115 VFFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKEA----S-PDKWLEVQRFLLEMGLVITDIIPDFNRYEGA  186 (243)
T ss_dssp             EEEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHHHHHHHHHHTS--EEEEEEEEEEEB---
T ss_pred             EEEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCcC----c-HHHHHHHHHHHHHCCcCHHHHHhhhcccccc
Confidence            999876643   2455778899999998776433333333211    0 0113478899999999999988766666665


Q ss_pred             cchhHHHHh
Q 024021          257 KGREKLGRW  265 (274)
Q Consensus       257 ~~~~~~~~~  265 (274)
                      ..-.....|
T Consensus       187 ~~i~~~~~~  195 (243)
T PF01861_consen  187 EIIGNTRFW  195 (243)
T ss_dssp             S-GGGSHHH
T ss_pred             hhhccccee
Confidence            544433333

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.96  E-value=4.4e-06  Score=60.15  Aligned_cols=97  Identities=21%  Similarity=0.149  Sum_probs=42.5

Q ss_pred             EEEcCCcchhHHHhhC---CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021          113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       113 LDiG~G~G~~~~~l~~---~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~  184 (274)
                      ||+|+..|..+..+++   .+  .+++++|..+. .+.+++.....+...+++++.++..+.   .+.+++|+++.-..-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH   79 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence            6899999999888776   23  37999999985 333333333344456799999998762   224689999965421


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .   .+.....++.+.+.|+|||++++-+
T Consensus        80 ~---~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 S---YEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            1   1344567888999999999988743

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.93  E-value=9.6e-05  Score=60.59  Aligned_cols=135  Identities=16%  Similarity=0.170  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|+|||||.--++.....  ++..++|+|+++.+++.........+  ...++...|+....+....|+.+..=++.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~~~~~~DlaLllK~lp  182 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDPPKEPADLALLLKTLP  182 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence            368999999999888876665  56799999999999999998877765  45778888998877778899999887777


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      .+.....-..++-+.. +  +...+++.|+.....+.  .....-...+..++...||.+.+..
T Consensus       183 ~le~q~~g~g~~ll~~-~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~  243 (251)
T PF07091_consen  183 CLERQRRGAGLELLDA-L--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT  243 (251)
T ss_dssp             HHHHHSTTHHHHHHHH-S--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred             HHHHHhcchHHHHHHH-h--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence            6643222122222222 2  34455556655432211  1112235778888888888855543

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.85  E-value=0.00021  Score=55.71  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---------CCCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---------WCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---------~~~~~  173 (274)
                      .++.+|||+||..|.|+....+   +...|.|||+-.-        .+..    .++++.+ |+.+         ..|..
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~----Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPE----GATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCC----CcccccccccCCHHHHHHHHHhCCCC
Confidence            4578999999999999987766   5668999998432        1222    3666666 7766         24567


Q ss_pred             CeeEEEeccccccc-----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          174 LFDLIFDYTFFCAI-----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       174 ~~D~v~~~~~~~~~-----~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++|+|++...-..-     +.    +....++.-....++|+|.++.-.|...          ....+...|++. |+.+
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~----------e~~~l~r~l~~~-f~~V  204 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS----------EEALLQRRLQAV-FTNV  204 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC----------chHHHHHHHHHH-hhhc
Confidence            89999986543221     10    2224455556677899999999887664          356677777764 7766


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      +...
T Consensus       205 k~vK  208 (232)
T KOG4589|consen  205 KKVK  208 (232)
T ss_pred             EeeC
Confidence            6544

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.78  E-value=0.00023  Score=60.55  Aligned_cols=132  Identities=20%  Similarity=0.205  Sum_probs=93.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~  179 (274)
                      ..++.+|||++++.|.=+..++.   ....+++.|+++..+...+.+....|.. ++.....|....   .....||.|+
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence            56678999999999999888876   3469999999999999999999888764 577777777663   2234699999


Q ss_pred             eccc------ccccCh--------------hHHHHHHHHHHhcc----cCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021          180 DYTF------FCAIEP--------------EMRAAWAQKIKDFL----KPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       180 ~~~~------~~~~~~--------------~~~~~~l~~~~~~L----~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ....      +..-++              .....+++...+.+    +|||+++..+.+....       -..+.+...
T Consensus       162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------ENE~vV~~f  234 (283)
T PF01189_consen  162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------ENEEVVEKF  234 (283)
T ss_dssp             EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------GTHHHHHHH
T ss_pred             cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------HHHHHHHHH
Confidence            7422      221111              11257889999999    9999999877554311       135566667


Q ss_pred             HhcC-CCcEEE
Q 024021          236 LQPM-GFQAIS  245 (274)
Q Consensus       236 l~~~-Gf~~~~  245 (274)
                      ++.+ .|..+.
T Consensus       235 l~~~~~~~l~~  245 (283)
T PF01189_consen  235 LKRHPDFELVP  245 (283)
T ss_dssp             HHHSTSEEEEC
T ss_pred             HHhCCCcEEEe
Confidence            7776 455544

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.77  E-value=8.5e-05  Score=56.38  Aligned_cols=57  Identities=21%  Similarity=0.062  Sum_probs=47.7

Q ss_pred             eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +++|+|||.|..+..+++.  +.+++++|.++.+++.++++...++.. +++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            4899999999999988874  347999999999999999998877653 58888877754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00011  Score=65.73  Aligned_cols=103  Identities=18%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC---CCee-EEEec
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT---ELFD-LIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~---~~~D-~v~~~  181 (274)
                      +..++|+.||||..+..+++.-.+|+|+|++++++..|+.++..++.+ |.+|+++-..+..   ..   +.=+ +++..
T Consensus       384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiD  462 (534)
T KOG2187|consen  384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIID  462 (534)
T ss_pred             CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEEC
Confidence            468999999999999999998889999999999999999999998875 6999999555421   11   1234 33322


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ..=.    ..-..++..+.+.-.+--.+++.+...
T Consensus       463 PpR~----Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  463 PPRK----GLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             CCcc----cccHHHHHHHHhccCccceEEEEcCHH
Confidence            1111    122356677777666777777776443

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.72  E-value=0.0011  Score=57.72  Aligned_cols=142  Identities=14%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCcchhHHHhhC------------CC------CeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEc
Q 024021          109 KGRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKA  164 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------------~~------~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~  164 (274)
                      ..+|+|+||.+|.+++.+..            .+      .+|+--|+-..-.+..-+.++..      ...--+..+.+
T Consensus        17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg   96 (334)
T PF03492_consen   17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG   96 (334)
T ss_dssp             EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred             ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence            36999999999999876543            12      47888888433333222222111      00011344557


Q ss_pred             ccCC-CCCCCCeeEEEecccccccCh------h-------------------------------HHHHHHHHHHhcccCC
Q 024021          165 DFFT-WCPTELFDLIFDYTFFCAIEP------E-------------------------------MRAAWAQKIKDFLKPD  206 (274)
Q Consensus       165 d~~~-~~~~~~~D~v~~~~~~~~~~~------~-------------------------------~~~~~l~~~~~~L~pg  206 (274)
                      .+.. ..|.++.|+++++..+|+++.      +                               ++..+|+.=++-|+||
T Consensus        97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G  176 (334)
T PF03492_consen   97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG  176 (334)
T ss_dssp             -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            7776 788899999999999888631      0                               1134455555678999


Q ss_pred             cEEEEEEccCCCCCC----------------------------------CCCcccCHHHHHHHHhcCC-CcEEEEeecc
Q 024021          207 GELITLMFPISDHVG----------------------------------GPPYKVSVSDYEEVLQPMG-FQAISIVDNK  250 (274)
Q Consensus       207 G~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~  250 (274)
                      |++++...+..+...                                  -|.|..+.+|+.+.+++.| |++..++...
T Consensus       177 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~  255 (334)
T PF03492_consen  177 GRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE  255 (334)
T ss_dssp             EEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred             cEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence            999998876654200                                  1234468999999999888 8877766655

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.70  E-value=0.0012  Score=58.24  Aligned_cols=142  Identities=16%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC------------CCcc-
Q 024021          109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP------------NAKF-  158 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~~-  158 (274)
                      ..+|+|+|||+|.+++.+..                 +..+|..-|+-..-.+..-+.++...            ...+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            46899999999988755432                 23577777774433333333322100            0011 


Q ss_pred             --eEEEEcccCC-CCCCCCeeEEEecccccccCh---h---------------------------------HHHHHHHHH
Q 024021          159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP---E---------------------------------MRAAWAQKI  199 (274)
Q Consensus       159 --~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~---~---------------------------------~~~~~l~~~  199 (274)
                        +..+.+.+.. ..|.++.++++++..+|+++.   +                                 ++..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              1223345554 788899999999999988742   1                                 123445555


Q ss_pred             HhcccCCcEEEEEEccCCCCC------------------------------------CCCCcccCHHHHHHHHhcCC-Cc
Q 024021          200 KDFLKPDGELITLMFPISDHV------------------------------------GGPPYKVSVSDYEEVLQPMG-FQ  242 (274)
Q Consensus       200 ~~~L~pgG~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~l~~~G-f~  242 (274)
                      .+-|.|||.+++...+.....                                    .-|.|..+.+|+.+.++..| |.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            677899999999876653210                                    01234458999999999988 87


Q ss_pred             EEEEeecc
Q 024021          243 AISIVDNK  250 (274)
Q Consensus       243 ~~~~~~~~  250 (274)
                      +..++...
T Consensus       304 I~~le~~~  311 (386)
T PLN02668        304 IDKLEVFK  311 (386)
T ss_pred             eeeeEEee
Confidence            77777644

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.67  E-value=0.00034  Score=55.21  Aligned_cols=103  Identities=20%  Similarity=0.285  Sum_probs=65.7

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCCCCCCeeEEEec
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~D~v~~~  181 (274)
                      -...|||||-|.++..|+.  +..-+.|.|+--...+..++++....      .-.++.....+.....|. -|.--..+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn-~f~kgqLs  140 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN-FFEKGQLS  140 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-hhhhcccc
Confidence            4689999999999999988  67789999998888777777665432      123455565555542221 01111111


Q ss_pred             ccccccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      -.+..+|++..           ..++.+..-+|++||.++..+
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            11122333222           466788888999999999876

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.00044  Score=51.77  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=87.2

Q ss_pred             ccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ..+.++..+... ..+.++.+|+|+|.|....+.++.| ...+|+|++|-.+..++-+.-..+...+..|..-|+.+...
T Consensus        57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl  136 (199)
T KOG4058|consen   57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL  136 (199)
T ss_pred             cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence            344455555554 3444799999999999999998877 48999999999999999888888777889999999988443


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      . .|..|+...+     +..+..+-.++..-+..|..++..-|+..
T Consensus       137 ~-dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  137 R-DYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             c-ccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence            2 2444443232     23445566788878888999888776553

>PRK10742 putative methyltransferase; Provisional

Probab=97.65  E-value=0.00034  Score=57.57  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=63.6

Q ss_pred             eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------C--CCcceEEEEcccCCCC--CCCCeeEEEe
Q 024021          111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWC--PTELFDLIFD  180 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~d~~~~~--~~~~~D~v~~  180 (274)
                      +|||+-+|+|..++.++..|++|+++|-++......+.++...      +  ...+++++.+|..+..  ....||+|+.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence            8999999999999999999999999999999999888877653      1  1256889999987732  2347999999


Q ss_pred             ccccccc
Q 024021          181 YTFFCAI  187 (274)
Q Consensus       181 ~~~~~~~  187 (274)
                      -..|.+-
T Consensus       171 DPMfp~~  177 (250)
T PRK10742        171 DPMFPHK  177 (250)
T ss_pred             CCCCCCC
Confidence            8887763

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=0.001  Score=55.91  Aligned_cols=79  Identities=18%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------
Q 024021          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------  169 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------  169 (274)
                      +.+..+ ..+++..+|.--|.|+.+..+++.   ..+++++|.+|.+++.|++.....+  +++++++.++.+.      
T Consensus        14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~   91 (314)
T COG0275          14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKE   91 (314)
T ss_pred             HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHh
Confidence            344433 455689999999999999999883   3579999999999999999987754  6899999988761      


Q ss_pred             CCCCCeeEEEe
Q 024021          170 CPTELFDLIFD  180 (274)
Q Consensus       170 ~~~~~~D~v~~  180 (274)
                      ...+++|.|+.
T Consensus        92 ~~i~~vDGiL~  102 (314)
T COG0275          92 LGIGKVDGILL  102 (314)
T ss_pred             cCCCceeEEEE
Confidence            12346777765

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.47  E-value=0.00023  Score=62.36  Aligned_cols=100  Identities=11%  Similarity=0.018  Sum_probs=68.6

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~  186 (274)
                      ..|||+|+|||.+++..++.|+ .|+++|.-..|.+.|++....++++++++.+.---.+  ..+..+.|+++.-.+.--
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtE  147 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTE  147 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhh
Confidence            4789999999999998888777 8999999999999999999999999999998765554  222234566654222111


Q ss_pred             c-ChhHHHHHHHHHHhcccCCcEE
Q 024021          187 I-EPEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       187 ~-~~~~~~~~l~~~~~~L~pgG~~  209 (274)
                      + -...++.+-.....++++|...
T Consensus       148 ligeGalps~qhAh~~L~~~nc~~  171 (636)
T KOG1501|consen  148 LIGEGALPSLQHAHDMLLVDNCKT  171 (636)
T ss_pred             hhccccchhHHHHHHHhcccCCee
Confidence            1 1112233333444555666543

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.41  E-value=0.0037  Score=49.98  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=70.5

Q ss_pred             HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHh--hCCC--CeEEEEeCChHHHHHHHHHhhcCC----------------
Q 024021           96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAM--ASPE--RYVVGLEISDIAIKKAEELSSSLP----------------  154 (274)
Q Consensus        96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l--~~~~--~~v~~vD~~~~~~~~a~~~~~~~~----------------  154 (274)
                      +.+++.+..... .+-++.|..||.|+++..+  ++..  ..|++.|+++++++.|++|+....                
T Consensus        38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e  117 (246)
T PF11599_consen   38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE  117 (246)
T ss_dssp             HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence            334444444422 3359999999999998655  3332  389999999999999988765543                


Q ss_pred             -------------------------CCcceEEEEcccCCC------CCCCCeeEEEeccccccc-------ChhHHHHHH
Q 024021          155 -------------------------NAKFVSFLKADFFTW------CPTELFDLIFDYTFFCAI-------EPEMRAAWA  196 (274)
Q Consensus       155 -------------------------~~~~~~~~~~d~~~~------~~~~~~D~v~~~~~~~~~-------~~~~~~~~l  196 (274)
                                               ...-..+...|++++      ......|+|+..-.+..+       +.+-...++
T Consensus       118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml  197 (246)
T PF11599_consen  118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML  197 (246)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence                                     111256788888872      223347999998776554       223457899


Q ss_pred             HHHHhcccCCcEEEEEE
Q 024021          197 QKIKDFLKPDGELITLM  213 (274)
Q Consensus       197 ~~~~~~L~pgG~~~~~~  213 (274)
                      ..++.+|.+++++.+..
T Consensus       198 ~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  198 NSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHCCS-TT-EEEEEE
T ss_pred             HHHHhhCCCCcEEEEec
Confidence            99999996556666644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.41  E-value=0.001  Score=56.78  Aligned_cols=73  Identities=21%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D~v  178 (274)
                      .++..++|.-+|.|+.+..+++  +..+|+|+|.++.+++.+++++...  ..++.++++++.+.      ...+++|.|
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~vDgI   96 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKIDGI   96 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence            4567999999999999998887  3479999999999999999987654  36899999998762      123568888


Q ss_pred             Eec
Q 024021          179 FDY  181 (274)
Q Consensus       179 ~~~  181 (274)
                      +..
T Consensus        97 l~D   99 (305)
T TIGR00006        97 LVD   99 (305)
T ss_pred             EEe
Confidence            864

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.40  E-value=0.011  Score=49.59  Aligned_cols=136  Identities=15%  Similarity=0.141  Sum_probs=93.8

Q ss_pred             CeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCC-C--------CCCCCeeE
Q 024021          110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT-W--------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~--------~~~~~~D~  177 (274)
                      ..|+.+|||-=.-...+..+ +.+++=+|. |+.++.-++.+...+  ...+.+++..|+.. +        ......-+
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl  161 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA  161 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence            57999999875555555333 456666665 566666666665432  23578899999863 1        11234568


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCCCcccCHHHHHHHHhcC
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~  239 (274)
                      +++-+++.|++++....+++.+.+...||+.+++...+..+.                  .....+.++.+++.++|..+
T Consensus       162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  241 (260)
T TIGR00027       162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER  241 (260)
T ss_pred             eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence            888899999999999999999999888999888755432110                  01123446789999999999


Q ss_pred             CCcEEEE
Q 024021          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      ||+....
T Consensus       242 Gw~~~~~  248 (260)
T TIGR00027       242 GWRASEH  248 (260)
T ss_pred             CCeeecC
Confidence            9998665

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00061  Score=58.22  Aligned_cols=110  Identities=17%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v  178 (274)
                      +..+.+|||+|.|.|.-+.++-.  +.. .++.++.|+..-+..-....... .........|+.    .......|+++
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehh
Confidence            44567899999999987766654  443 68888888865555444332221 112223333333    24445567777


Q ss_pred             Eeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          179 FDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      +..+=+-+. .+......++.+..++.|||.+++++.+.
T Consensus       190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt  228 (484)
T COG5459         190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT  228 (484)
T ss_pred             hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence            765433222 22345568999999999999999998654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.30  E-value=0.0018  Score=61.81  Aligned_cols=124  Identities=20%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC---------C-----CCeEEEEeCCh---HHHHHHH-----------HHhhc-----CCC
Q 024021          109 KGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKAE-----------ELSSS-----LPN  155 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~---------~-----~~~v~~vD~~~---~~~~~a~-----------~~~~~-----~~~  155 (274)
                      .-+|+|+|-|+|.+.....+         +     ..+++++|..|   +.+..+-           +....     .+.
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            46999999999998654431         1     23899999754   2222221           11111     111


Q ss_pred             --------CcceEEEEcccCCCCC--CCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024021          156 --------AKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       156 --------~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~-~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~  224 (274)
                              .-++++..+|+.+..+  ...+|+++..++--.-.++.+ ..++..+.++++|||.+...+           
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t-----------  206 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT-----------  206 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence                    0145567788876222  246999997654332223332 578999999999999998765           


Q ss_pred             cccCHHHHHHHHhcCCCcEEEE
Q 024021          225 YKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                         ....+++.|..+||.+.+.
T Consensus       207 ---~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        207 ---SAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             ---hHHHHHHHHHHcCCeeeec
Confidence               6788999999999998655

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.25  E-value=0.00081  Score=59.41  Aligned_cols=100  Identities=18%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC--CCCCeeEEEecc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~--~~~~~D~v~~~~  182 (274)
                      +.++||.-+|+|.=++..+.  .+ .+|+.-|+++++++..++|+..+++.+ ++++...|+....  ....||+|=...
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP  129 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP  129 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence            45899999999988876654  34 389999999999999999999998877 6888888887754  567899987322


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .      .....+++...+.++.||++.++.-
T Consensus       130 f------GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  130 F------GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             S------S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             C------CCccHhHHHHHHHhhcCCEEEEecc
Confidence            2      2234688999999999999998763

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PHA01634 hypothetical protein

Probab=97.22  E-value=0.0031  Score=46.08  Aligned_cols=49  Identities=18%  Similarity=0.186  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      ...+.+|+|||++.|..+++++..|+ .|+++|.++...+..+++...+.
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            45678999999999999999999888 89999999999999999876653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.21  E-value=0.0054  Score=52.05  Aligned_cols=127  Identities=14%  Similarity=0.021  Sum_probs=80.6

Q ss_pred             eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccccc
Q 024021          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~~~~~~  186 (274)
                      +++|+.||.|.....+...|. .+.++|+++.+++..+.+.+..       .+.+|+.+...   ...+|+++.......
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCChh
Confidence            689999999999998888888 5788999999999998887432       45667766322   346999998766544


Q ss_pred             cCh--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          187 IEP--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       187 ~~~--------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++.        +.+..++.   ++.+.++|.  +++.+....-...  ........+.+.|++.||.+....-
T Consensus        75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~--~~~~~~~~i~~~l~~~GY~~~~~~l  143 (275)
T cd00315          75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH--DNGNTLKVILNTLEELGYNVYWKLL  143 (275)
T ss_pred             hhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc--CchHHHHHHHHHHHhCCcEEEEEEE
Confidence            321        11121222   333344554  5555533321110  0112467888899999998755433

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.20  E-value=0.0018  Score=51.93  Aligned_cols=139  Identities=18%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  170 (274)
                      +.+++.  ..++..|+|+|.-.|+.+..++.      ...+|+|+|++....+.  ...+...+.++++++++|..++. 
T Consensus        24 ~qeli~--~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~   99 (206)
T PF04989_consen   24 YQELIW--ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEI   99 (206)
T ss_dssp             HHHHHH--HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHH
T ss_pred             HHHHHH--HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHH
Confidence            444444  35678999999999999877764      45699999996443322  22233344578999999987621 


Q ss_pred             --------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcc---cCHHHHHHH
Q 024021          171 --------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYK---VSVSDYEEV  235 (274)
Q Consensus       171 --------~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~  235 (274)
                              ......+|+.-..  |.. +.....++....++++|+++++.+....+.    ....++.   .....+.+.
T Consensus       100 ~~~v~~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~f  176 (206)
T PF04989_consen  100 VDQVRELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEF  176 (206)
T ss_dssp             HHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHH
T ss_pred             HHHHHHhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHH
Confidence                    1123445553222  111 122456778999999999999854322110    1111121   246777888


Q ss_pred             HhcCC-CcE
Q 024021          236 LQPMG-FQA  243 (274)
Q Consensus       236 l~~~G-f~~  243 (274)
                      |+++. |.+
T Consensus       177 L~~~~~f~i  185 (206)
T PF04989_consen  177 LAEHPDFEI  185 (206)
T ss_dssp             HHTTTTEEE
T ss_pred             HHHCCCcEe
Confidence            88776 443

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.19  E-value=0.00087  Score=60.11  Aligned_cols=124  Identities=10%  Similarity=0.048  Sum_probs=81.6

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~~  187 (274)
                      ..|+|..+|.|.++.+|.+..  |+....-|..-...-..+-..|+.    -.--|..+  ..-+.+||+|.+.++|...
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIydRGLI----G~yhDWCE~fsTYPRTYDLlHA~~lfs~~  440 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYDRGLI----GVYHDWCEAFSTYPRTYDLLHADGLFSLY  440 (506)
T ss_pred             eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhhcccc----hhccchhhccCCCCcchhheehhhhhhhh
Confidence            689999999999999998754  444444332110011111111211    12224444  2335789999999998875


Q ss_pred             Ch-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          188 EP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       188 ~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .. -....++-++.|+|+|||.+++-+...           -..++..+++...|+........
T Consensus       441 ~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------vl~~v~~i~~~lrW~~~~~d~e~  493 (506)
T PF03141_consen  441 KDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------VLEKVKKIAKSLRWEVRIHDTED  493 (506)
T ss_pred             cccccHHHHHHHhHhhcCCCceEEEeccHH-----------HHHHHHHHHHhCcceEEEEecCC
Confidence            33 356788999999999999999965221           46788889999889887666544

; GO: 0008168 methyltransferase activity

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.11  E-value=0.0013  Score=59.14  Aligned_cols=103  Identities=22%  Similarity=0.272  Sum_probs=76.3

Q ss_pred             CeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecc
Q 024021          110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~  182 (274)
                      -.|+-+|+|-|-+.....+      +..+++++|-+|.++.-.+. .....+.++|+++..|++.+.++ ++.|++++- 
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-  446 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE-  446 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence            3688999999988754433      45589999999999887776 33344567899999999996664 889999863 


Q ss_pred             ccccc-ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          183 FFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .++.+ +.+.-++.++.+-+.|||+|+.+=..+
T Consensus       447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY  479 (649)
T KOG0822|consen  447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY  479 (649)
T ss_pred             hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence            22222 334446778899999999988765443

>PRK11524 putative methyltransferase; Provisional

Probab=97.08  E-value=0.0017  Score=55.35  Aligned_cols=60  Identities=18%  Similarity=0.206  Sum_probs=53.4

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      .|...+..++.....++..|||.-||+|..+.+..+.|.+++|+|++++-++.|++++..
T Consensus       193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            446677788887778899999999999999999999999999999999999999999743

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.05  E-value=0.0092  Score=54.80  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=84.2

Q ss_pred             CccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024021           93 QPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~----~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  165 (274)
                      +|+....-++..+.. +..+|+|..||+|.+.....+    .  ...++|.|+++.....|+.+.-.++....+....+|
T Consensus       170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            344444444443332 446999999999999876654    2  267999999999999999998777654345666666


Q ss_pred             cCC-CC-----CCCCeeEEEecccccc--cC--------------------h-hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          166 FFT-WC-----PTELFDLIFDYTFFCA--IE--------------------P-EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       166 ~~~-~~-----~~~~~D~v~~~~~~~~--~~--------------------~-~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ... +.     ....||.|+++..+..  +.                    . ..-..++.++...|+|||+.-++....
T Consensus       250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            554 21     2356999999887741  10                    0 111578899999999998666555433

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.011  Score=51.17  Aligned_cols=56  Identities=16%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             HHHHHhcCCCC-CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        98 ~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~----------~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      +.+.+.....| +..++|+|+|+|.++..+++          ...++..||+|++....-++++...
T Consensus        66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            44444444454 36899999999999887765          2458999999999998888877654

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.94  E-value=0.00083  Score=50.74  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=56.9

Q ss_pred             CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CCCCCcc------cCHHH
Q 024021          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VGGPPYK------VSVSD  231 (274)
Q Consensus       169 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~~~~~~~------~~~~~  231 (274)
                      .+.+++.|+|++.++++|+..+....+++.+++.|+|||++-+........           ..++.-+      .+-+.
T Consensus        42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~  121 (185)
T COG4627          42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRM  121 (185)
T ss_pred             cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHH
Confidence            566789999999999999987777889999999999999999877554311           1122211      13455


Q ss_pred             HHHHHhcCCCcEEEEee
Q 024021          232 YEEVLQPMGFQAISIVD  248 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~  248 (274)
                      +...+.++||.+.-..+
T Consensus       122 m~n~~m~~~~~~kl~e~  138 (185)
T COG4627         122 MFNGFMDAGFVVKLLEY  138 (185)
T ss_pred             HHHHHHhhhheehhhhH
Confidence            56667777776654433

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.89  E-value=0.0019  Score=52.83  Aligned_cols=58  Identities=26%  Similarity=0.354  Sum_probs=46.0

Q ss_pred             CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHH
Q 024021           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE  148 (274)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~  148 (274)
                      ...+...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|++++.++.|++
T Consensus       174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3445677888887777888999999999999999999999999999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.89  E-value=0.0095  Score=48.50  Aligned_cols=102  Identities=22%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChH----HHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDI----AIKKAEELSSSLPNAKFVSFLKADFFTWCP----TEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~  174 (274)
                      ..++.+||-+|+++|.....+..   +...|+++|+++.    .+..|+++       .|+--+..|+..+..    -..
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgm  226 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGM  226 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeee
Confidence            45678999999999998877766   5668999999864    34444444       467777888876422    236


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD  218 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~  218 (274)
                      +|+|++.-.    ++++...+.-.....|++||-+++......-
T Consensus       227 VDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikanci  266 (317)
T KOG1596|consen  227 VDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCI  266 (317)
T ss_pred             EEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccc
Confidence            788875322    3345556666788899999999987765543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.87  E-value=0.023  Score=50.01  Aligned_cols=111  Identities=14%  Similarity=0.086  Sum_probs=80.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~  179 (274)
                      ..++.+|||..+..|.=+.+++.   .-..|++.|.+...+...+.++...|. .+...+..|..++.   ..++||-|+
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fDRVL  317 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFDRVL  317 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccceee
Confidence            45568999999999988877765   445899999999999999999988875 34666666765421   123899999


Q ss_pred             ecccccc--c---Ch---------------hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          180 DYTFFCA--I---EP---------------EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       180 ~~~~~~~--~---~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      ....-..  +   +.               ...++++.....++++||+|+..+.+..
T Consensus       318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence            6433222  0   00               1225788888999999999998776654

>PRK13699 putative methylase; Provisional

Probab=96.83  E-value=0.0041  Score=51.18  Aligned_cols=60  Identities=22%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      .|...+..++.....++..|||.-||+|..+.+..+.|.+++|+|++++-.+.+.+++..
T Consensus       148 kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        148 KPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            456667777776667889999999999999999999999999999999999999988754

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.75  E-value=0.0042  Score=50.85  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=47.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHH---hhcCCC-----CcceEEEEcccCCC--CCCCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL---SSSLPN-----AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~---~~~~~~-----~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      .+|||+-+|-|..+..++..|++|+++|-+|-.....+.-   ......     ..+++++.+|..+.  .+.++||+|+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY  156 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY  156 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence            4899999999999999988899999999999777665532   222211     14799999999884  3357899999


Q ss_pred             ecccccc
Q 024021          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      ....|.+
T Consensus       157 ~DPMFp~  163 (234)
T PF04445_consen  157 FDPMFPE  163 (234)
T ss_dssp             E--S---
T ss_pred             ECCCCCC
Confidence            8887765

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.71  E-value=0.022  Score=47.15  Aligned_cols=102  Identities=17%  Similarity=0.048  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhh-----cCCCCcceEEEEcccCCCC----CCCC-eeE
Q 024021          109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSS-----SLPNAKFVSFLKADFFTWC----PTEL-FDL  177 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~~~~~~~d~~~~~----~~~~-~D~  177 (274)
                      ..+||++|+|+|..++.++. .++.|+..|... .+...+.+..     .+.....+.....+.....    ..+. +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            45799999999988887776 677899888843 3333333321     1222234555555554421    1123 899


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+++.++..-  .....++..++..|..++.+++..
T Consensus       166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEE
Confidence            9999988754  344567788888898899554443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.69  E-value=0.014  Score=48.51  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             HhcCCCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCee
Q 024021          102 HQSGALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD  176 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D  176 (274)
                      ....++.++.|+-+| -.-..+++++-.+.  +|..+|++...++...+..+..+. +++..+.-|+.++.|.   ++||
T Consensus       146 ~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFD  223 (354)
T COG1568         146 YSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFD  223 (354)
T ss_pred             ccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCC
Confidence            344577788999998 55555666665444  899999999999999998888775 4699999999997764   5899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCCCcccCHHHHHH-HHhcCCCcEEEEeecccc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGPPYKVSVSDYEE-VLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~~~~~~  252 (274)
                      +++...+-- +  +....++.+=...|+.-   |++.+......        .....++++ +..+.||.+.++...--.
T Consensus       224 vfiTDPpeT-i--~alk~FlgRGI~tLkg~~~aGyfgiT~ress--------idkW~eiQr~lIn~~gvVITdiirnFN~  292 (354)
T COG1568         224 VFITDPPET-I--KALKLFLGRGIATLKGEGCAGYFGITRRESS--------IDKWREIQRILINEMGVVITDIIRNFNE  292 (354)
T ss_pred             eeecCchhh-H--HHHHHHHhccHHHhcCCCccceEeeeecccc--------HHHHHHHHHHHHHhcCeeeHhhhhhhhc
Confidence            998643321 1  23456666666667655   66666542211        113456666 777889988887765555


Q ss_pred             cCCccchhHHHHhh
Q 024021          253 IGPRKGREKLGRWK  266 (274)
Q Consensus       253 ~~~~~~~~~~~~~~  266 (274)
                      +.++...+.=..|+
T Consensus       293 Y~nwey~~et~a~~  306 (354)
T COG1568         293 YVNWEYIEETRAWK  306 (354)
T ss_pred             ccccccchhhhhhh
Confidence            55554433333443

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.67  E-value=0.0084  Score=51.26  Aligned_cols=73  Identities=19%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------C-CCCCee
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C-PTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~D  176 (274)
                      ..++...+|.-.|.|+.+..+++  ++.+++|+|.++.+++.|++++...  .+++.++.+++.+.      . ...++|
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~d   95 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVD   95 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccC
Confidence            45668999999999999998886  5689999999999999999888755  37899999998771      2 335789


Q ss_pred             EEEe
Q 024021          177 LIFD  180 (274)
Q Consensus       177 ~v~~  180 (274)
                      .|+.
T Consensus        96 giL~   99 (310)
T PF01795_consen   96 GILF   99 (310)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.67  E-value=0.0085  Score=48.51  Aligned_cols=79  Identities=16%  Similarity=0.086  Sum_probs=55.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCC-C-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-W-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~-----~~~~~~D~v~  179 (274)
                      ..++||||.|.-+.--.+-.  -|++.+|.|+++.+++.|+..+..+ ++...+++..-.-.. .     ...+.||+++
T Consensus        79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl  158 (292)
T COG3129          79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL  158 (292)
T ss_pred             ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence            35899998877655433322  5789999999999999999998776 444445554432222 1     1246899999


Q ss_pred             eccccccc
Q 024021          180 DYTFFCAI  187 (274)
Q Consensus       180 ~~~~~~~~  187 (274)
                      |+..|+.-
T Consensus       159 CNPPFh~s  166 (292)
T COG3129         159 CNPPFHDS  166 (292)
T ss_pred             cCCCcchh
Confidence            99998864

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.64  E-value=0.0088  Score=50.19  Aligned_cols=106  Identities=22%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCC---CCCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~---~~~~~~~D~v~  179 (274)
                      .++++|-||.|.|......++.  --.+..+|++...++..++-.+..  +. .+++.+..||-+.   ....++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4589999999999999877763  238999999999999998876542  11 3679999998876   34467899999


Q ss_pred             ecc--cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYT--FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~--~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .-.  .....-.-....+...+.+.||+||+++...
T Consensus       201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            632  2211111234678899999999999988754

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.63  E-value=0.0034  Score=50.62  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             CeEEEEcCCcchhHHHhhC--------CCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------
Q 024021          110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------  169 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--------~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------  169 (274)
                      .+++|+.+..|.|+..+.+        .+.   .+++||+.+-        .+-    +.|.-+++|+++.         
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHHHH
Confidence            6899999999999988865        122   3999999652        122    3477889999872         


Q ss_pred             CCCCCeeEEEecccc-----cccCh----hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          170 CPTELFDLIFDYTFF-----CAIEP----EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~-----~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      +..++.|+|+|.+.-     |.++.    +.+...+.-...+|+|||.|+.-.|..
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg  166 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG  166 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence            234589999998763     33332    223455666778999999999755443

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.54  E-value=0.014  Score=50.86  Aligned_cols=122  Identities=11%  Similarity=0.021  Sum_probs=83.7

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEecccc
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~-~~D~v~~~~~~  184 (274)
                      .+++|+-||.|.+..-+...|. .+.++|+++.+++.-+.+.+.      ..+...|+......   . .+|+++.....
T Consensus         4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpPC   77 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPPC   77 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCCC
Confidence            5899999999999999988887 678899999999988888742      44566676652221   1 78999987665


Q ss_pred             cccCh--------hH---HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021          185 CAIEP--------EM---RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       185 ~~~~~--------~~---~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      +.++.        +.   +-.-+.++...++|  .+++.+....-...   ..-..+++.+.|++.||.
T Consensus        78 Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~  141 (328)
T COG0270          78 QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---KGQTFDEIKKELEELGYG  141 (328)
T ss_pred             cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---CchHHHHHHHHHHHcCCc
Confidence            55421        11   12334566666788  55555543321111   122678999999999997

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.45  E-value=0.07  Score=38.62  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=68.1

Q ss_pred             CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEeccccccc
Q 024021          117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       117 ~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~~~~~~~  187 (274)
                      ||.|..+..+++    .+..++.+|.+++.++.++...        +.++.+|..+.     ..-+++|.+++..     
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT-----   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence            566777776665    4558999999999988887653        67899999872     2235688777432     


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      +++.....+....+.+.|...+++..              ...+..+.|+..|...+
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~~--------------~~~~~~~~l~~~g~d~v  113 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIARV--------------NDPENAELLRQAGADHV  113 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEEE--------------SSHHHHHHHHHTT-SEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCcCEE
Confidence            23344445556667778888888766              45566778888887654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.098  Score=42.99  Aligned_cols=105  Identities=12%  Similarity=0.093  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCee-EE
Q 024021          109 KGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFD-LI  178 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D-~v  178 (274)
                      +...+|+|+|+..-+..+..    .+  .+++.+|++...+....+.+......-.+.-+.+|+..   ..+..+-- ++
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~  158 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV  158 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence            57999999999877765544    34  48999999998876655544333222346677788765   23322223 33


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +....+..+.++....++.++...+.||-.+++..
T Consensus       159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv  193 (321)
T COG4301         159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV  193 (321)
T ss_pred             EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence            44467888888888999999999999999988844

>PRK13699 putative methylase; Provisional

Probab=96.21  E-value=0.03  Score=46.04  Aligned_cols=81  Identities=15%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             eEEEEcccCC---CCCCCCeeEEEecccccc---------cC----hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024021          159 VSFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       159 ~~~~~~d~~~---~~~~~~~D~v~~~~~~~~---------~~----~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~  222 (274)
                      ++++.+|..+   ..+++++|+|+....+..         +.    .+-...++.++.++|||||.+++.....      
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------   75 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------   75 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc------
Confidence            3567788765   577889999999877641         00    0223578899999999999887643100      


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                           ....+...++++||.+....-+.
T Consensus        76 -----~~~~~~~al~~~GF~l~~~IiW~   98 (227)
T PRK13699         76 -----RVDRFMAAWKNAGFSVVGHLVFT   98 (227)
T ss_pred             -----cHHHHHHHHHHCCCEEeeEEEEE
Confidence                 24567778899999987654443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.21  E-value=0.031  Score=48.41  Aligned_cols=94  Identities=22%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCCCCCCeeEEEe
Q 024021          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~D~v~~  180 (274)
                      ..++.+|+=+|+| .|..+.++++ .|++|+++|.+++-.+.|++.-..       .++..   |..+.. .+.||+|+.
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~-~~~~d~ii~  235 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAV-KEIADAIID  235 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHh-HhhCcEEEE
Confidence            3466788887777 4456677777 789999999999999999887532       23332   222211 123999995


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      .-. .        ..+....+.|++||.++++-...
T Consensus       236 tv~-~--------~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         236 TVG-P--------ATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             CCC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence            433 2        34577888999999999987664

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.14  E-value=0.005  Score=45.48  Aligned_cols=77  Identities=23%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             ceEEEEcccCCCC--CCCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021          158 FVSFLKADFFTWC--PTELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       158 ~~~~~~~d~~~~~--~~~~~D~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .+++..+|+.+..  ....||+|+..+.-..-.++. ...++..+.++++|||.+...+              ....+++
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------~a~~Vr~   97 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------SAGAVRR   97 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------BHHHHH
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------chHHHHH
Confidence            4677778886621  236899999765432222222 1578999999999999887754              4578999


Q ss_pred             HHhcCCCcEEEEee
Q 024021          235 VLQPMGFQAISIVD  248 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~  248 (274)
                      .|.++||.+.+..-
T Consensus        98 ~L~~aGF~v~~~~g  111 (124)
T PF05430_consen   98 ALQQAGFEVEKVPG  111 (124)
T ss_dssp             HHHHCTEEEEEEE-
T ss_pred             HHHHcCCEEEEcCC
Confidence            99999999876654

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.10  E-value=0.037  Score=46.31  Aligned_cols=43  Identities=21%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             CeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhc
Q 024021          110 GRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----------~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      .+|+|+|+|+|.++..+++          ...+++.+|.||.+.+.-++++..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            6999999999999877765          125899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.01  E-value=0.014  Score=50.04  Aligned_cols=111  Identities=21%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHH-------HHHHhhcCCCC-cceEEEEcccCCCC--CCCCe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK-------AEELSSSLPNA-KFVSFLKADFFTWC--PTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~-------a~~~~~~~~~~-~~~~~~~~d~~~~~--~~~~~  175 (274)
                      ..++..|+|.-.|||.++...++-|+.|.|.|++-.++..       .+.+++..+.+ --+..+.+|+.+..  ....|
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            4567899999999999999999999999999999877762       23444444422 23567888887732  23479


Q ss_pred             eEEEeccccccc------------------------Ch-------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          176 DLIFDYTFFCAI------------------------EP-------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       176 D~v~~~~~~~~~------------------------~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      |.|+|...++--                        |.       ......+.-.++.|..||+++......
T Consensus       286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence            999997665321                        10       112466777889999999988866543

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.00  E-value=0.0058  Score=43.34  Aligned_cols=46  Identities=20%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             cHHHHHHHhcCCC--CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh
Q 024021           95 APIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPERYVVGLEISD  140 (274)
Q Consensus        95 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~  140 (274)
                      ++.+..+....-.  +...-+|+|||.|.+.-.|...|..-+|+|.-.
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            4444454444322  346899999999999999999999999999854

; GO: 0008168 methyltransferase activity

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.92  E-value=0.17  Score=39.93  Aligned_cols=133  Identities=14%  Similarity=0.090  Sum_probs=84.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ++.++.  ..++..|+|.|.-.|..+.+.+.    -|  .+|.++|++-...+.+....      +++.|+.++-.++.-
T Consensus        61 yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai  132 (237)
T COG3510          61 YQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAI  132 (237)
T ss_pred             HHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHH
Confidence            444554  45678999999999999988876    34  79999999866555544332      679999999876321


Q ss_pred             -------CCCe-eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-CCcc---cCHHHHHHHHhcC
Q 024021          172 -------TELF-DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-PPYK---VSVSDYEEVLQPM  239 (274)
Q Consensus       172 -------~~~~-D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~~  239 (274)
                             .+.+ -+.++...-|+.  +..-..++.+..+|..|-++++.+-...+.... .++.   -..+-+.+.++++
T Consensus       133 ~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~  210 (237)
T COG3510         133 AEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF  210 (237)
T ss_pred             HHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence                   1222 333333333333  334466788889999999999877555444311 1111   1345666667766


Q ss_pred             C
Q 024021          240 G  240 (274)
Q Consensus       240 G  240 (274)
                      +
T Consensus       211 p  211 (237)
T COG3510         211 P  211 (237)
T ss_pred             C
Confidence            5

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.88  E-value=0.016  Score=48.79  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCcchhHH-HhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~-~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .+..|+|+=+|.|+++. .+...|+ .|+++|.+|.+++..+++++.++...+..+..+|-+.+-+....|-|....   
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL---  270 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL---  270 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc---
Confidence            34689999999999998 7777777 899999999999999999998888788888889988877777788777432   


Q ss_pred             ccChhHHHHHHHHHHhcccCCcE-EEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGE-LITLM  213 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~-~~~~~  213 (274)
                       +|. ....+ ....++|+|.|- ++-+.
T Consensus       271 -lPS-se~~W-~~A~k~Lk~eggsilHIH  296 (351)
T KOG1227|consen  271 -LPS-SEQGW-PTAIKALKPEGGSILHIH  296 (351)
T ss_pred             -ccc-cccch-HHHHHHhhhcCCcEEEEe
Confidence             221 11122 234556666544 55443

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=95.81  E-value=0.017  Score=44.22  Aligned_cols=130  Identities=19%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCC--CCCCCCeeEEEecccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT--WCPTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~--~~~~~~~D~v~~~~~~  184 (274)
                      +++++-+|+..--.-......|+ ++..+|.++--++.-        ..+++ .+...|+.+  ..-.++||.+.+..++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~--------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~si   73 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE--------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSSI   73 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc--------cccccccccHHHHHHHHHHhhccchhhheechh
Confidence            35667777764322222223444 789999865211110        01121 222334433  1234679999999988


Q ss_pred             ccc---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-CCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAI---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-GGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~---------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +|.         ++.-....+.++..+||+||.+++...-..+.. .+....+.+..+.-++.  ||+.+..-.
T Consensus        74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gfe~i~tfs  145 (177)
T PF03269_consen   74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GFEWIDTFS  145 (177)
T ss_pred             ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--CcEEEeeec
Confidence            775         111124567899999999999999776554331 12222345556554544  788887633

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.61  E-value=0.0077  Score=53.95  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v~  179 (274)
                      ++.+|||.-|++|.-++..++  +|. +|++-|.++.+++..++++..++..+.+.--..|+..     ......||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            457999999999999887766  444 8999999999999999999888766667777777765     22346799887


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ... ++     ....+|+...+.++.||+++++.-.+
T Consensus       189 LDP-yG-----s~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  189 LDP-YG-----SPSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             cCC-CC-----CccHHHHHHHHHhhcCCEEEEEecch
Confidence            322 22     22467888999999999999976443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.59  E-value=0.064  Score=46.62  Aligned_cols=99  Identities=19%  Similarity=0.078  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~  184 (274)
                      +.+|+|.-+|+|.=++.++. .+. +++.-|++|.+++.+++|+..+.. .+...+..|.......  ..||+|=. .+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence            67999999999998876665 455 899999999999999999988732 3455555776654333  56887653 222


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..     ...+++...+.++.||++.++.-
T Consensus       131 GS-----PaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         131 GS-----PAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CC-----CchHHHHHHHHhhcCCEEEEEec
Confidence            21     13577888888999999988653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.53  E-value=0.072  Score=46.08  Aligned_cols=124  Identities=15%  Similarity=0.062  Sum_probs=77.7

Q ss_pred             eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEeccccc
Q 024021          111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~~~~~  185 (274)
                      +++|+-||.|.+..-+...|. .+.++|+++.+.+.-+.+.+        ....+|+.+.    .+. .+|+++....-.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ   72 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ   72 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence            689999999999999998887 78899999999999998883        6788888873    222 599999875544


Q ss_pred             ccCh--------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEP--------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~--------~----~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      .++.        +    ....++ ++.+.++|.  +++.+....-...  ........+.+.|++.||.+....-
T Consensus        73 ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~Pk--~~~~ENV~~l~~~--~~~~~~~~i~~~l~~lGY~v~~~vl  142 (335)
T PF00145_consen   73 GFSIAGKRKGFDDPRNSLFFEFL-RIVKELKPK--YFLLENVPGLLSS--KNGEVFKEILEELEELGYNVQWRVL  142 (335)
T ss_dssp             TTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS-S--EEEEEEEGGGGTG--GGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             eEeccccccccccccchhhHHHH-HHHhhccce--EEEecccceeecc--ccccccccccccccccceeehhccc
Confidence            3321        1    123333 334456774  3343422211100  0001357888999999998765433

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=95.43  E-value=0.092  Score=45.49  Aligned_cols=124  Identities=16%  Similarity=0.050  Sum_probs=75.8

Q ss_pred             EEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccccC
Q 024021          112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIE  188 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~  188 (274)
                      |+|+-||.|.+..-+...|.+ +.++|+++.+++..+.+.+.       .+..+|+.+..+  -..+|+++.......++
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS   73 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQPFS   73 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence            589999999999999888886 56799999999988888743       334567766321  23589998765543332


Q ss_pred             h--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          189 P--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       189 ~--------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      .        +.+..++.   ++.+.++|.  +++.+....-...  ...-....+...|+..||.+...
T Consensus        74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~  138 (315)
T TIGR00675        74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYK  138 (315)
T ss_pred             hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEE
Confidence            1        11222222   333445664  4554433211100  00113577888899999987543

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PTZ00357 methyltransferase; Provisional

Probab=95.29  E-value=0.067  Score=50.18  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=61.9

Q ss_pred             eEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHh-hcCCC-------CcceEEEEcccCCCCCC----
Q 024021          111 RALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELS-SSLPN-------AKFVSFLKADFFTWCPT----  172 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~--~~~v~~vD~~~~~~~~a~~~~-~~~~~-------~~~~~~~~~d~~~~~~~----  172 (274)
                      .|+-+|+|-|-+.....+    .  ..+|++||-++.++.....+. ....+       .++|+++..|+..+..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            689999999988654433    2  348999999977554444432 11112       35699999999985322    


Q ss_pred             --------CCeeEEEe--cccccccChhHHHHHHHHHHhcccC----CcE
Q 024021          173 --------ELFDLIFD--YTFFCAIEPEMRAAWAQKIKDFLKP----DGE  208 (274)
Q Consensus       173 --------~~~D~v~~--~~~~~~~~~~~~~~~l~~~~~~L~p----gG~  208 (274)
                              +++|+||+  .+.|+.  .+..++.|+.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence                    26999997  344443  23334556666666665    665

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.20  E-value=0.56  Score=36.36  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=70.2

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHh-hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C-
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-  170 (274)
                      ...+.+.+........+|+-|||=+-.....- ...+.+++..|++...-.        .+  ++ .|+--|..++  . 
T Consensus        12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD~~~p~~~~   80 (162)
T PF10237_consen   12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYDYNEPEELP   80 (162)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh--------cC--Cc-ceEECCCCChhhhh
Confidence            34444444433345579999998775555444 225679999999875322        11  22 4566666552  1 


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 --~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                        ..++||+|++...+  +..+........+..++++++.+++.+
T Consensus        81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T  123 (162)
T PF10237_consen   81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT  123 (162)
T ss_pred             hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence              14689999999888  666777777788888889988888764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=95.12  E-value=0.28  Score=38.22  Aligned_cols=82  Identities=20%  Similarity=0.198  Sum_probs=57.4

Q ss_pred             EEcccCCC-----CCCCCeeEEEecccccc-----------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024021          162 LKADFFTW-----CPTELFDLIFDYTFFCA-----------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       162 ~~~d~~~~-----~~~~~~D~v~~~~~~~~-----------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~  225 (274)
                      ...|+.+.     .....||.|+.+++...           .....+..++..+..+|+++|.+.+......      + 
T Consensus        58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~------p-  130 (166)
T PF10354_consen   58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ------P-  130 (166)
T ss_pred             cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC------C-
Confidence            44466652     23568999998766443           1123457888999999999999998774332      2 


Q ss_pred             ccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          226 KVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       226 ~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                       ++.-.+.++.+.+||..++......
T Consensus       131 -y~~W~i~~lA~~~gl~l~~~~~F~~  155 (166)
T PF10354_consen  131 -YDSWNIEELAAEAGLVLVRKVPFDP  155 (166)
T ss_pred             -CccccHHHHHHhcCCEEEEEecCCH
Confidence             2456778999999999988876553

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=94.84  E-value=0.066  Score=47.46  Aligned_cols=60  Identities=13%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      +++++..+++.+   ..+++++|.++.+....+++++...+.++.+.+.++|||+++.-....
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            789999999987   346789999999999999999999999999999999999999876554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.81  E-value=0.0097  Score=49.77  Aligned_cols=106  Identities=17%  Similarity=0.174  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHH-HHhhcCC-----CCcc---eEEEEc---ccCCCCCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSSLP-----NAKF---VSFLKA---DFFTWCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~-~~~~~~~-----~~~~---~~~~~~---d~~~~~~~  172 (274)
                      ...+++|||+|||+|...+.....+ ..+...|++.+.+..-. .+.....     ..+.   ..+...   |. .....
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg-~~~~t  192 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG-VFNHT  192 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc-hhhhc
Confidence            4567899999999999998887766 58888888877762110 0000000     0001   111222   21 11122


Q ss_pred             C--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          173 E--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~--~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +  .||+|.++-.+...+. ....+......+++++|+++++.
T Consensus       193 ~~~~ydlIlsSetiy~~~~-~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  193 ERTHYDLILSSETIYSIDS-LAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             cccchhhhhhhhhhhCcch-hhhhHhhhhhhcCCccchhhhhh
Confidence            3  7999998888775532 22222556667788899887755

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.80  E-value=0.49  Score=40.58  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=94.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC-----CCC-----CC
Q 024021          109 KGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT-----WCP-----TE  173 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~-----~~~-----~~  173 (274)
                      ...|+-+|||-  .+....-  + +.+|+-+|. |+.++.=++.+++.+.  ..+++++..|+.+     ...     .+
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            36899998865  4444433  2 456777776 7777777777766542  2368999999984     112     34


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCC---C---C------------CCCCCcc-cCHHHHH
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PIS---D---H------------VGGPPYK-VSVSDYE  233 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~-~~~---~---~------------~~~~~~~-~~~~~~~  233 (274)
                      ..-++++-+++.|++++....+++.|...+.||..++.... ...   .   .            ...+.++ ....++.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~  249 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE  249 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence            55688889999999999999999999999999888777542 110   0   0            0112223 3589999


Q ss_pred             HHHhcCCCcEEEEe
Q 024021          234 EVLQPMGFQAISIV  247 (274)
Q Consensus       234 ~~l~~~Gf~~~~~~  247 (274)
                      .++.+.||......
T Consensus       250 ~~l~~~g~~~~~~~  263 (297)
T COG3315         250 TWLAERGWRSTLNR  263 (297)
T ss_pred             HHHHhcCEEEEecC
Confidence            99999999987763

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=94.79  E-value=0.019  Score=40.98  Aligned_cols=74  Identities=22%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             CeeEEEeccccccc----ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--CCCCC---------CcccCHHHHHHHHhc
Q 024021          174 LFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELITLMFPISD--HVGGP---------PYKVSVSDYEEVLQP  238 (274)
Q Consensus       174 ~~D~v~~~~~~~~~----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~l~~  238 (274)
                      +||+|+|..+--++    .++-+..+++++++.|+|||.+++.-.+-..  .....         ...+.++.+...+..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~   80 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE   80 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence            48999998875443    2345678999999999999999985432110  00000         112467788888887


Q ss_pred             --CCCcEEEEe
Q 024021          239 --MGFQAISIV  247 (274)
Q Consensus       239 --~Gf~~~~~~  247 (274)
                        .||..++..
T Consensus        81 ~evGF~~~e~~   91 (110)
T PF06859_consen   81 PEVGFSSVEEL   91 (110)
T ss_dssp             TTT---EEEEE
T ss_pred             cccceEEEEEc
Confidence              588877643

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.79  E-value=0.035  Score=49.00  Aligned_cols=64  Identities=13%  Similarity=-0.075  Sum_probs=55.0

Q ss_pred             CCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCC
Q 024021          105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFT  168 (274)
Q Consensus       105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~  168 (274)
                      ...++..|.|+-||.|-++..++..+++|++-|.++++++..+.+++.+...+. ++....|...
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            456778999999999999999999999999999999999999999988776554 7777666544

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.66  E-value=0.14  Score=42.50  Aligned_cols=86  Identities=20%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~  185 (274)
                      .+++...|+|+..|+++-.|.+++..|++||-.+-+    ....    ..+.++-...|-++..| ..+.|-.+|..+= 
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma----~sL~----dtg~v~h~r~DGfk~~P~r~~idWmVCDmVE-  280 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMA----QSLM----DTGQVTHLREDGFKFRPTRSNIDWMVCDMVE-  280 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcceEEEEeccchhh----hhhh----cccceeeeeccCcccccCCCCCceEEeehhc-
Confidence            456899999999999999999999999999986532    2111    22568899999999666 5678988876552 


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pg  206 (274)
                           ....+-..+..+|..|
T Consensus       281 -----kP~rv~~li~~Wl~nG  296 (358)
T COG2933         281 -----KPARVAALIAKWLVNG  296 (358)
T ss_pred             -----CcHHHHHHHHHHHHcc
Confidence                 2234556677777644

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=94.61  E-value=0.11  Score=44.14  Aligned_cols=90  Identities=16%  Similarity=0.147  Sum_probs=63.2

Q ss_pred             cHHHHHHHhcCCCCCCe---EEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024021           95 APIIVHLHQSGALPKGR---ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-  168 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~---vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-  168 (274)
                      ...+..++........+   =+|||+|+...--.+..  .++...++|++...+..|+.+++.++++..+..++....+ 
T Consensus        86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt  165 (419)
T KOG2912|consen   86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT  165 (419)
T ss_pred             HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence            44466666554322233   48998887665544433  5678999999999999999999999988888888775543 


Q ss_pred             -------CCCCCCeeEEEecccc
Q 024021          169 -------WCPTELFDLIFDYTFF  184 (274)
Q Consensus       169 -------~~~~~~~D~v~~~~~~  184 (274)
                             ..+...||+..|+..|
T Consensus       166 ll~d~~~~~~e~~ydFcMcNPPF  188 (419)
T KOG2912|consen  166 LLMDALKEESEIIYDFCMCNPPF  188 (419)
T ss_pred             cchhhhccCccceeeEEecCCch
Confidence                   2233459999998765

>PRK10458 DNA cytosine methylase; Provisional

Probab=94.24  E-value=0.69  Score=42.27  Aligned_cols=128  Identities=12%  Similarity=-0.021  Sum_probs=75.0

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------  171 (274)
                      .+++|+-||.|.+..-+...|. .|.++|+++.+.+--+.+....   +....+.+|+.+...                 
T Consensus        89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~  165 (467)
T PRK10458         89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ  165 (467)
T ss_pred             ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhhc
Confidence            5999999999999999988777 6788999999888877775321   112333445544210                 


Q ss_pred             -CCCeeEEEecccccccCh-----------------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021          172 -TELFDLIFDYTFFCAIEP-----------------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       172 -~~~~D~v~~~~~~~~~~~-----------------~~~~~~l~---~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                       ...+|+++....-..++.                 +.+..++-   ++.+..+|.  +++.+....-..  .....+.+
T Consensus       166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--~~~g~~f~  241 (467)
T PRK10458        166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--HDKGKTFR  241 (467)
T ss_pred             cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--ccccHHHH
Confidence             125798887655433321                 11111222   233344555  444443322110  01112467


Q ss_pred             HHHHHHhcCCCcEE
Q 024021          231 DYEEVLQPMGFQAI  244 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~  244 (274)
                      .+.+.|++.||.+.
T Consensus       242 ~i~~~L~~lGY~v~  255 (467)
T PRK10458        242 IIMQTLDELGYDVA  255 (467)
T ss_pred             HHHHHHHHcCCeEE
Confidence            88889999999975

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=94.05  E-value=0.53  Score=33.89  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~-~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~  185 (274)
                      .++|+|+|-|-=.. +..|++.|+.++++|+++.       +.+     ..++++..|++++.-  -...|+|++.-   
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYSiR---   78 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYSIR---   78 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceeecC---
Confidence            35999998776433 4567779999999999876       222     238999999998532  35678888643   


Q ss_pred             ccChhHHHHHHHHHHhcccCC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPD  206 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pg  206 (274)
                        |++.+...+-.+.+.++-.
T Consensus        79 --pppEl~~~ildva~aVga~   97 (129)
T COG1255          79 --PPPELQSAILDVAKAVGAP   97 (129)
T ss_pred             --CCHHHHHHHHHHHHhhCCC
Confidence              3344455556666655544

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=94.04  E-value=0.27  Score=40.93  Aligned_cols=123  Identities=16%  Similarity=0.116  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCC--------------------------hHHHHHHHHHhhcCC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEIS--------------------------DIAIKKAEELSSSLP  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~vD~~--------------------------~~~~~~a~~~~~~~~  154 (274)
                      -++-|+|+||-.|..+..++.       .+.+++++|.-                          ....+..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            347899999999987754432       34578887742                          113455555555544


Q ss_pred             C-CcceEEEEcccCCCCCCC---CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021          155 N-AKFVSFLKADFFTWCPTE---LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       155 ~-~~~~~~~~~d~~~~~~~~---~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                      + .+++.++.|.+.+..+..   ++-++..-.=   + -+.....|+.++..|.|||++++-++...         --..
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D---l-YesT~~aLe~lyprl~~GGiIi~DDY~~~---------gcr~  220 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD---L-YESTKDALEFLYPRLSPGGIIIFDDYGHP---------GCRK  220 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEEE------S-HHHHHHHHHHHGGGEEEEEEEEESSTTTH---------HHHH
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEEEecc---c-hHHHHHHHHHHHhhcCCCeEEEEeCCCCh---------HHHH
Confidence            3 458999999997744432   2322221111   1 13456789999999999999999765441         0245


Q ss_pred             HHHHHHhcCCCcE
Q 024021          231 DYEEVLQPMGFQA  243 (274)
Q Consensus       231 ~~~~~l~~~Gf~~  243 (274)
                      -+.+.++++|...
T Consensus       221 AvdeF~~~~gi~~  233 (248)
T PF05711_consen  221 AVDEFRAEHGITD  233 (248)
T ss_dssp             HHHHHHHHTT--S
T ss_pred             HHHHHHHHcCCCC
Confidence            5667777777654

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.00  E-value=0.11  Score=46.30  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-cCC----CCCCCCeeEE
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~----~~~~~~~D~v  178 (274)
                      .++.+||..|||. |..+..+++ .|. ++++++.+++..+.+++....    ..+.....+ +.+    ......+|+|
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~v  258 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVC  258 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence            3457999999987 777777776 665 699999999999988876311    112222221 111    2233468999


Q ss_pred             Eeccccc-----------cc--ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFC-----------AI--EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~-----------~~--~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +..-.-.           +.  +.......+..+.++++++|.++...
T Consensus       259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            8642110           00  00112346788899999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK11524 putative methyltransferase; Provisional

Probab=94.00  E-value=0.24  Score=42.20  Aligned_cols=57  Identities=21%  Similarity=0.374  Sum_probs=41.8

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccc------c----Ch----hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~------~----~~----~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+.+++.+|..+   ..++++||+|++...+..      .    ..    .-...++..+.++|+|||.+++..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            346788899887   456789999999877642      0    00    113578899999999999998853

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=93.99  E-value=1.3  Score=38.69  Aligned_cols=135  Identities=14%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CC-
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WC-  170 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~-  170 (274)
                      ..++.+|||+++..|.=+.++.+.      ...|++-|+++..+...+....... .++..+...|+..        .. 
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            456789999999999999887762      2379999999988888877663332 2334343333332        11 


Q ss_pred             -CCCCeeEEEeccc------ccccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024021          171 -PTELFDLIFDYTF------FCAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       171 -~~~~~D~v~~~~~------~~~~~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~  228 (274)
                       ....||-|++.-.      +..-+.               ...-.++.+-.++|++||.++..+.+...-      . .
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi------e-N  304 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI------E-N  304 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch------h-h
Confidence             2236898886311      111000               111367888899999999999877554311      1 3


Q ss_pred             HHHHHHHHhcCC--CcEEEEee
Q 024021          229 VSDYEEVLQPMG--FQAISIVD  248 (274)
Q Consensus       229 ~~~~~~~l~~~G--f~~~~~~~  248 (274)
                      ...+.++++..|  +.++.+..
T Consensus       305 EaVV~~~L~~~~~~~~lv~~~~  326 (375)
T KOG2198|consen  305 EAVVQEALQKVGGAVELVDVSG  326 (375)
T ss_pred             HHHHHHHHHHhcCcccceeecc
Confidence            455666666655  44444433

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=93.90  E-value=0.15  Score=43.45  Aligned_cols=108  Identities=21%  Similarity=0.227  Sum_probs=72.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--------------CC--------CeEEEEeCCh--HHHHHHHHHhhcC-----------C
Q 024021          110 GRALVPGCGTGYDVVAMAS--------------PE--------RYVVGLEISD--IAIKKAEELSSSL-----------P  154 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--------------~~--------~~v~~vD~~~--~~~~~a~~~~~~~-----------~  154 (274)
                      .+||.||.|.|.-...++.              .+        ..++.+|+.+  ..+......+...           .
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999876654432              01        4899999964  5555555544333           0


Q ss_pred             -----CCcceEEEEcccCCCCCC--------CCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          155 -----NAKFVSFLKADFFTWCPT--------ELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       155 -----~~~~~~~~~~d~~~~~~~--------~~~D~v~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                           ..-+++|.+.|+.....+        ...++|...+.+.-+   .....-+++.++-..++||..++|++-+..
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence                 112588999999873321        246777665554433   224456889999999999999999886654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.87  E-value=0.19  Score=44.15  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccC----CCCCCCCeeEEE
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFF----TWCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~----~~~~~~~~D~v~  179 (274)
                      ++.+|+=+|||+ |.++..+++ .|+ +|+++|.++..++.|++.....    .+..... +..    .......+|+++
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence            345899999997 444455555 554 8999999999999999855221    1111111 111    112223699999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      -.--        ....+..+.+++++||.+.+.-....
T Consensus       244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         244 EAVG--------SPPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             ECCC--------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence            4322        12467889999999999888665543

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.53  E-value=3.5  Score=35.32  Aligned_cols=158  Identities=12%  Similarity=0.071  Sum_probs=96.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC----CeEEEEeCChHHHHHHHHHhhcCC-----------------
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP-----------------  154 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~v~~vD~~~~~~~~a~~~~~~~~-----------------  154 (274)
                      ..+..++.. ......|+.+|||.-.....|...+    ..++=||+.+....+.........                 
T Consensus        76 ~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~  154 (335)
T KOG2918|consen   76 HAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSG  154 (335)
T ss_pred             HHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCc
Confidence            335555554 2223689999999988888887744    367778887666555511111100                 


Q ss_pred             ---CCcceEEEEcccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-
Q 024021          155 ---NAKFVSFLKADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-  219 (274)
Q Consensus       155 ---~~~~~~~~~~d~~~~-----------~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-  219 (274)
                         .+++-..+.+|+.+.           ...+-.-++++=.++.+++++....++..+.........+...-..+.+. 
T Consensus       155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~F  234 (335)
T KOG2918|consen  155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRF  234 (335)
T ss_pred             ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChH
Confidence               123455566666531           11223456666678889988887788888888777666555544443332 


Q ss_pred             ---------CCCCC-----cccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          220 ---------VGGPP-----YKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       220 ---------~~~~~-----~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                               ..+.+     -..+.+...+-+.++||.-+.+.+...-+.
T Consensus       235 g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n  283 (335)
T KOG2918|consen  235 GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYN  283 (335)
T ss_pred             HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHH
Confidence                     11222     224788888889999999988877544333

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.39  E-value=0.88  Score=42.04  Aligned_cols=98  Identities=17%  Similarity=0.263  Sum_probs=62.7

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------C----
Q 024021          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------W----  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----------~----  169 (274)
                      .++.+|+=+|||.=.. +...++ .|+.|+++|.+++..+.++..-        .++...|..+           .    
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--------A~~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--------AEFLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEEeccccccccccchhhhcchhH
Confidence            4578999999997554 444444 7889999999999999888742        1222111100           0    


Q ss_pred             --------CC-CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          170 --------CP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 --------~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                              .. ...+|+|+.......-+.+  ..+.+.+.+.++|||.++....
T Consensus       235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        235 IKAEMALFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence                    00 1368999976543221111  1234889999999999887654

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=93.19  E-value=0.035  Score=40.98  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=57.7

Q ss_pred             CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---C----CCCCCCeeEEEecccccccCh
Q 024021          118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---T----WCPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       118 G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~----~~~~~~~D~v~~~~~~~~~~~  189 (274)
                      |.|..+..+++ .|.+|+++|.++...+.+++.-.       ..++..+-.   +    ......+|+|+..-.     .
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S   68 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccccccccccccccccccccceEEEEecC-----c
Confidence            45778888877 78999999999999999987541       112222111   1    233357999994322     1


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          190 EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                         ...++...++++++|.++++....
T Consensus        69 ---~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 ---GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             ---HHHHHHHHHHhccCCEEEEEEccC
Confidence               246788899999999999887654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=93.18  E-value=3  Score=33.76  Aligned_cols=84  Identities=12%  Similarity=0.054  Sum_probs=56.1

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcch--hHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGY--DVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~--~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .+++.++..  ......+++..|+-|.  .++.|+    +.|.++++|-.+++.....++.....+..+-++|+.++..+
T Consensus        30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e  107 (218)
T PF07279_consen   30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE  107 (218)
T ss_pred             HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence            444444443  4445788999766443  233332    26889999999988888888888777766668999988543


Q ss_pred             --CCCCCCeeEEEe
Q 024021          169 --WCPTELFDLIFD  180 (274)
Q Consensus       169 --~~~~~~~D~v~~  180 (274)
                        ...-...|+++.
T Consensus       108 ~~~~~~~~iDF~vV  121 (218)
T PF07279_consen  108 EVMPGLKGIDFVVV  121 (218)
T ss_pred             HHHhhccCCCEEEE
Confidence              223356898884

The function of this family is unknown.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.87  E-value=0.29  Score=42.23  Aligned_cols=92  Identities=23%  Similarity=0.316  Sum_probs=58.7

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-------CCCCCCCeeE
Q 024021          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-------TWCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~D~  177 (274)
                      .++.+||..|+| .|..+..+++ .|.++++++.+++..+.+++..    .    +.+..+-.       .......+|+
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~----~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----A----DEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C----CEEEcCCCcCHHHHHHHhcCCCceE
Confidence            345688888775 3666666666 7889999999999888875532    1    11111111       1123456998


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+.....        ...++.+.+.|+++|.++....
T Consensus       236 vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         236 IFDFVGT--------QPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             EEECCCC--------HHHHHHHHHHhhcCCEEEEECC
Confidence            8843211        2356788899999999987653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.49  E-value=0.34  Score=42.39  Aligned_cols=39  Identities=18%  Similarity=0.143  Sum_probs=33.9

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHH
Q 024021          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE  148 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~  148 (274)
                      ..|+|+|+|.|+++..+.- -|..|.+||-+....+.|++
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            6899999999999998865 68899999999877777655

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.40  E-value=0.6  Score=40.75  Aligned_cols=96  Identities=19%  Similarity=0.284  Sum_probs=56.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  182 (274)
                      .++.+||=.|||. |..+..+++ .|+ +|+++|.+++.++.+++.-...    -+.....++.+. ...+.+|+|+..-
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~~~~~g~~D~vid~~  243 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK----LVNPQNDDLDHYKAEKGYFDVSFEVS  243 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE----EecCCcccHHHHhccCCCCCEEEECC
Confidence            4567888887642 233344444 677 6999999999999887642110    011111122111 1123589988432


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .     .   ...+....++|++||.++....
T Consensus       244 G-----~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        244 G-----H---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             C-----C---HHHHHHHHHHhhcCCEEEEEcc
Confidence            1     1   1345677889999999888754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.35  E-value=0.56  Score=44.47  Aligned_cols=90  Identities=10%  Similarity=-0.031  Sum_probs=58.6

Q ss_pred             CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      .+|+=+|+  |..+..++    +.+..++.+|.+++.++.+++.        ....+.+|..+.     ..-++.|++++
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI  470 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence            46666655  45555444    3788999999999999888652        266789999872     22346787774


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .     .+++.....+-...+.+.|...++.-..
T Consensus       471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        471 T-----CNEPEDTMKIVELCQQHFPHLHILARAR  499 (601)
T ss_pred             E-----eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence            2     3333333344455566788888887663

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.31  E-value=0.57  Score=38.77  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~  181 (274)
                      .++.+||-.|+|. |..+..+++ .|.++++++.++...+.++......    -+.....+...   ....+.+|+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~  208 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH----VIDYKEEDLEEELRLTGGGGADVVIDA  208 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----eccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence            4567999999985 555555555 6789999999988877775542110    01101011100   1223569999853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..-     .   ..+..+.+.|+++|.++....
T Consensus       209 ~~~-----~---~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         209 VGG-----P---ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             CCC-----H---HHHHHHHHhcccCCEEEEEcc
Confidence            221     0   245677888999999887653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.63  E-value=2.4  Score=38.51  Aligned_cols=65  Identities=17%  Similarity=0.012  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v  178 (274)
                      ...+++=+|+  |..+..+++    .+..++.+|.+++.++.++...      ..+.++.+|..+.     ..-..+|.|
T Consensus       230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v  301 (453)
T PRK09496        230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF  301 (453)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence            3468888877  555555444    6889999999999888777653      2467888888762     223568888


Q ss_pred             Ee
Q 024021          179 FD  180 (274)
Q Consensus       179 ~~  180 (274)
                      ++
T Consensus       302 i~  303 (453)
T PRK09496        302 IA  303 (453)
T ss_pred             EE
Confidence            74

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=91.34  E-value=2  Score=39.78  Aligned_cols=107  Identities=14%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCC-C--CCCCCeeE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~-~--~~~~~~D~  177 (274)
                      +...+.|..||+|.++....+      ....++|.+..+.+...++.+....+.. +......+|-.. +  ....+||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            446899999999999865432      1236999999999999999885443321 123333344333 1  12346888


Q ss_pred             EEecccccc-c-----C---------------h--hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCA-I-----E---------------P--EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~-~-----~---------------~--~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+++..+.. +     +               +  +.-..++..+...|++||...++..
T Consensus       297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~  356 (501)
T TIGR00497       297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF  356 (501)
T ss_pred             EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence            887765432 1     1               0  1124677888899999998655543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.14  E-value=1.1  Score=42.22  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=63.3

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      .+++=+|||.  .+..+++    .|..++.+|.+++.++.+++.        ....+.+|..+.     ..-+++|.+++
T Consensus       418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            5666666654  5544443    688999999999988888642        277899999872     22346786653


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      .     .+++.....+-...+...|+..++...              +..+-.+.+++.|-+.+-
T Consensus       488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~vv  533 (558)
T PRK10669        488 T-----IPNGYEAGEIVASAREKRPDIEIIARA--------------HYDDEVAYITERGANQVV  533 (558)
T ss_pred             E-----cCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHcCCCEEE
Confidence            1     222222222223334456777777654              122344455667766443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.07  E-value=0.75  Score=40.32  Aligned_cols=95  Identities=26%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeC---ChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  181 (274)
                      .++.+||=+|+|. |..+.++++ .|+++++++.   ++...+.+++.-..     .+.....+..+......+|+|+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~  245 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA  245 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence            3567888888753 334445555 6779999986   67777777653211     111111111110112468988843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -.     .   ...+....+.|++||.+++...
T Consensus       246 ~g-----~---~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         246 TG-----V---PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cC-----C---HHHHHHHHHHccCCcEEEEEec
Confidence            21     1   1256778899999999887654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.63  E-value=0.45  Score=34.99  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~  185 (274)
                      ..+|+|+|-|.=... ..|.+.|..|+++|+.+.       ..+     ..+.++..|++++..  -...|+|++...-.
T Consensus        14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~   81 (127)
T PF03686_consen   14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP   81 (127)
T ss_dssp             SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred             CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence            459999988876443 455668899999999886       111     248899999998543  25789999765433


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      -+     +..+-++.+.+  |.-+++...+.
T Consensus        82 El-----~~~il~lA~~v--~adlii~pL~~  105 (127)
T PF03686_consen   82 EL-----QPPILELAKKV--GADLIIRPLGG  105 (127)
T ss_dssp             TS-----HHHHHHHHHHH--T-EEEEE-BTT
T ss_pred             HH-----hHHHHHHHHHh--CCCEEEECCCC
Confidence            22     33344444433  45566655444

; PDB: 2K4M_A.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.56  E-value=2.8  Score=39.99  Aligned_cols=90  Identities=11%  Similarity=0.075  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+|+=+|||.  .+..    +.+.+..++.+|.+++.++.+++.        ....+.+|..+.     ..-++.|+++
T Consensus       400 ~~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv  469 (621)
T PRK03562        400 QPRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLI  469 (621)
T ss_pred             cCcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence            35787777765  4433    344788999999999999988652        266789999872     2234678777


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.     .+++.....+-...+.+.|+-.+++-.
T Consensus       470 v~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa  498 (621)
T PRK03562        470 NA-----IDDPQTSLQLVELVKEHFPHLQIIARA  498 (621)
T ss_pred             EE-----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            42     233333344445555667777776644

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.46  E-value=1.1  Score=38.54  Aligned_cols=99  Identities=12%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCcchh-HHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC----CCCCC
Q 024021          106 ALPKGRALVPGCGTGYD-VVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~-~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~----~~~~~  173 (274)
                      ...+.+||-+|+|.=.+ +...++ -|+ +|+.+|+++..++.|++.-...     +.....     ++.+    .....
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~-----~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV-----TDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE-----EeeccccccHHHHHHHHHhhcccc
Confidence            34568999999997444 444444 565 8999999999999999832211     111111     1111    12224


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      .+|+.+....++        ..++.....++.||.++++.++..
T Consensus       242 ~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  242 QPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             CCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence            588888544433        345677889999999888887654

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.92  E-value=1.8  Score=34.20  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=55.7

Q ss_pred             CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC----------CCCCCe
Q 024021          110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~----------~~~~~~  175 (274)
                      ..|+.+|||-=.....+...  +.+++-+|. |++++.-++.++..+.  ..+.+++.+|+.+.          ...+..
T Consensus        80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p  158 (183)
T PF04072_consen   80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP  158 (183)
T ss_dssp             SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred             cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence            48999999887777666663  557777777 6666666665554421  12367899999861          123456


Q ss_pred             eEEEecccccccChhHHHHHHHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKI  199 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~  199 (274)
                      -++++-+++.|++++....+++.+
T Consensus       159 tl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  159 TLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             eEEEEcchhhcCCHHHHHHHHHHh
Confidence            788888999999887776666654

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=89.82  E-value=2.4  Score=38.26  Aligned_cols=108  Identities=12%  Similarity=-0.022  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCcchhHHHhh--CC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA--SP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~--~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~----~~~~~~~D~v~  179 (274)
                      +..++|+|.|.|.-.-.+.  -+  ...++.||.+..+............ ...--++.. -+..    ....+.||+|+
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhcccCCCCcccceeeEE
Confidence            4678888888765443333  23  3479999999999998887765510 000111111 1111    23345699999


Q ss_pred             ecccccccChh-HHHH-HHHHHHhcccCCcEEEEEEccCC
Q 024021          180 DYTFFCAIEPE-MRAA-WAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       180 ~~~~~~~~~~~-~~~~-~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      +.+.++.+... .+-. .-....+..++|+.+++++.+..
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            99999887532 2223 33445566788889888876543

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=89.79  E-value=1.2  Score=37.87  Aligned_cols=62  Identities=23%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ..+...+..++.....++..|||.-+|+|..+......+...+|+|++++-++.+.++....
T Consensus       206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            44566677777776777899999999999999999999999999999999999999988654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.18  E-value=1  Score=40.73  Aligned_cols=105  Identities=19%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CCCCCCeeEE
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTELFDLI  178 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~D~v  178 (274)
                      +..+|-+|-|.|.+...+..  +..++++++++|++++.|++.+..... .+......|..+        ...+..||++
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            46888899999999887755  557999999999999999988744321 122222222221        1234578988


Q ss_pred             Eec---cccccc--Chh--HHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~---~~~~~~--~~~--~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +..   .-.+.+  |+.  ....++..+...|.|.|.+++..-
T Consensus       375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv  417 (482)
T KOG2352|consen  375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV  417 (482)
T ss_pred             EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence            852   011111  222  236788999999999999977543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=88.62  E-value=1.3  Score=38.61  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~  179 (274)
                      .++.+||=.|+  |.|..+.+|++ .|+.++++--+++-.+.+++.-...    -+.+...|+.+    ......+|+|+
T Consensus       141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDvv~  216 (326)
T COG0604         141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREEDFVEQVRELTGGKGVDVVL  216 (326)
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceEEE
Confidence            34678888884  45566777877 6768888887777666665554221    23444445443    23334699999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ..--         ...+.+..+.|+++|.++......
T Consensus       217 D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         217 DTVG---------GDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             ECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence            4222         234567888999999988866543

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.53  E-value=1.3  Score=39.03  Aligned_cols=113  Identities=19%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHh-------hcCCC-CcceEEEEccc
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELS-------SSLPN-AKFVSFLKADF  166 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~~~~~~~d~  166 (274)
                      +....+.. ..++..-.|+|+|.|.....++..  ...-+|+++.+..-+.+..+.       .-.|. ...++.+++++
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf  260 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF  260 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence            44444444 345578899999999998877762  236677777544433333221       11222 24578888888


Q ss_pred             CCC----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          167 FTW----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       167 ~~~----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...    .-....++|+++.+..  +++.... +..+..-+++|.+++-..
T Consensus       261 ~~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  261 LDPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKDGTRIISSK  308 (419)
T ss_pred             CCHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCCcceEeccc
Confidence            762    2234678999887753  3333333 358888899999988644

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.52  E-value=0.63  Score=40.90  Aligned_cols=96  Identities=17%  Similarity=0.134  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~  179 (274)
                      .++.+||=.|+|. |..+.++++ .|. +|+++|.+++..+.+++.-..    .-+.....+..+    ......+|+|+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT----HTVNSSGTDPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----eEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence            4567888888643 333344554 677 599999999988888653210    001111112111    12234689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..-.  .      ...+....+.+++||.+++...
T Consensus       251 d~~g--~------~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       251 DAVG--R------PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             ECCC--C------HHHHHHHHHHhccCCEEEEECC
Confidence            4221  1      1245667788999999887653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=88.36  E-value=2.4  Score=36.95  Aligned_cols=92  Identities=14%  Similarity=0.052  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCcch-hHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGY-DVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~-~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      .++.+||=+|||.=. .+..+++  . +.+|+++|.+++.++.++. .   +   .. ....+..   ....+|+|+..-
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~---~~-~~~~~~~---~~~g~d~viD~~  230 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D---ET-YLIDDIP---EDLAVDHAFECV  230 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C---ce-eehhhhh---hccCCcEEEECC
Confidence            456799999875422 2334443  3 3589999999988888864 2   1   11 1111111   112489888422


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -  .   ......+....++|++||.+++.-.
T Consensus       231 G--~---~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         231 G--G---RGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             C--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence            1  1   0012456788899999999887654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=87.42  E-value=1.6  Score=33.35  Aligned_cols=36  Identities=19%  Similarity=0.180  Sum_probs=24.1

Q ss_pred             EEcCCcc--hhHHHhh----CCCCeEEEEeCChHHHHHHHHH
Q 024021          114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL  149 (274)
Q Consensus       114 DiG~G~G--~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~  149 (274)
                      |||++.|  .....+.    .++.+++++|.+|..++..+.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5554442    2567999999999999999888

; PDB: 2PY6_A.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=87.30  E-value=6.2  Score=34.21  Aligned_cols=90  Identities=18%  Similarity=0.087  Sum_probs=55.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+||=.|+|. |..+..+++ .|+++++++.+++..+.+++.-...       .+  |..+. ..+.+|+++.....
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi--~~~~~-~~~~~d~~i~~~~~  233 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AG--GAYDT-PPEPLDAAILFAPA  233 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ec--ccccc-CcccceEEEECCCc
Confidence            4567899888642 333344554 7889999999999888887653211       11  11111 12357876632221


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                              ...+....++|++||.+++.-.
T Consensus       234 --------~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       234 --------GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             --------HHHHHHHHHhhCCCcEEEEEec
Confidence                    1356778899999999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.23  E-value=12  Score=30.30  Aligned_cols=103  Identities=9%  Similarity=-0.070  Sum_probs=60.2

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      .+++||-.|++ |..+.    .+++.|++|++++-+++............   .++.++.+|+.+...           -
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45688888875 44433    33447999999999887666554443322   257888999886210           1


Q ss_pred             CCeeEEEecccccccC-h---hH-----------HHHHHHHHHhcccCCcEEEEEEc
Q 024021          173 ELFDLIFDYTFFCAIE-P---EM-----------RAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~-~---~~-----------~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +.+|.++........+ .   +.           ...+++.+...++++|.+++...
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  136 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS  136 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence            3468777654321110 0   00           11235556666777887776553

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.07  E-value=3  Score=37.54  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=58.1

Q ss_pred             HHHHHhcC--CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~--~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      +..++...  ..++.+|+=+|+|. |......++ .|++|+.+|.++.....|+..-        .+...  ..+..  .
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------~~~~~--~~e~v--~  256 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------YEVMT--MEEAV--K  256 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------CEEcc--HHHHH--c
Confidence            34444432  35688999999986 333333333 7889999999998877776531        11111  11111  3


Q ss_pred             CeeEEEecccccccChhHHHHHHH-HHHhcccCCcEEEEEE
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQ-KIKDFLKPDGELITLM  213 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~  213 (274)
                      .+|+|+..-.       . ...+. ...+.+++||+++.+.
T Consensus       257 ~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         257 EGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence            4799985321       1 12344 4588999999987765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=86.97  E-value=1.8  Score=38.18  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~  180 (274)
                      .++.+||=.|+|. |..+..+++ .|+ .|+++|.+++..+.+++.-...    -+.....|..+   ....+.+|+|+.
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid  265 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA----TVNAGDPNAVEQVRELTGGGVDYAFE  265 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce----EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence            3456787787642 333344444 687 6999999999988886542110    01111112111   011226899984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .-.  .      ...+....++++++|.++....
T Consensus       266 ~~G--~------~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         266 MAG--S------VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCC--C------hHHHHHHHHHHhcCCEEEEEcc
Confidence            221  1      1345677788999999887553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.91  E-value=9.1  Score=32.65  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=46.5

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ...+..||==|+|.|.   .+..+++.|+.+...|++++......+.....|   ++....+|+.+
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~   97 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD   97 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence            3456789988988883   456777899999999999988887777766553   58888888865

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.87  E-value=4  Score=35.77  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---~~~~~~~D~v~  179 (274)
                      .++.+||=.|+  |.|..+.++++ .|.++++++.+++..+.+++.+...   .-+..... ++.+   ....+.+|+|+
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~  233 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYF  233 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence            45678888887  46677777776 7889999999988877776332111   00111111 2211   11124689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     ..    ...+....++|++||.++++-
T Consensus       234 d~-----vG----~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        234 DN-----VG----GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             EC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence            42     11    124577888999999988754

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=86.48  E-value=2.9  Score=36.06  Aligned_cols=94  Identities=16%  Similarity=0.136  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~---~~~~~~~D~v~  179 (274)
                      .++.+||=.|+  |.|..+..+++ .|.++++++-+++..+.+++.-    ...-+..... +..+   ....+.+|+|+
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG----a~~vi~~~~~~~~~~~~~~~~~~gvdvv~  212 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG----FDVAFNYKTVKSLEETLKKASPDGYDCYF  212 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence            45678888874  56667777766 7889999999988888876532    1000111111 1111   11224689998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     ...    ..+....++|+++|.++...
T Consensus       213 d~-----~G~----~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       213 DN-----VGG----EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             EC-----CCH----HHHHHHHHHhCcCcEEEEec
Confidence            42     111    23467889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.31  E-value=4.8  Score=34.08  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +|.=||+|.  |.++..+.+.|.+|+++|.+++.++.+....    .   +.....+. +  .....|+|+..     ++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~~~~~~~-~--~~~~aDlVila-----vp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VDEASTDL-S--LLKDCDLVILA-----LP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cccccCCH-h--HhcCCCEEEEc-----CC
Confidence            455677664  3445566667889999999998887776531    1   11111111 1  12357888853     34


Q ss_pred             hhHHHHHHHHHHhcccCCcEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~  209 (274)
                      ......+++.+...++++..+
T Consensus        67 ~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         67 IGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCcEE
Confidence            444556778888888776544

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=86.09  E-value=1.3  Score=38.36  Aligned_cols=95  Identities=21%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~  180 (274)
                      .++.+||-.|+|. |..+..+++ .|.+++++..+++..+.+++....    .-+.....++.+    ......+|+++.
T Consensus       158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~----~v~~~~~~~~~~~l~~~~~~~~vd~vld  233 (337)
T cd08261         158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD----DTINVGDEDVAARLRELTDGEGADVVID  233 (337)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC----EEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence            3457888888753 555566665 788999998888888777543210    101111112111    223346899985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...    .    ...+..+.+.|+++|.++...
T Consensus       234 ~~g----~----~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         234 ATG----N----PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CCC----C----HHHHHHHHHHHhcCCEEEEEc
Confidence            321    1    134577888999999987654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=85.64  E-value=1.6  Score=36.86  Aligned_cols=96  Identities=19%  Similarity=0.092  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cc-cCCCCCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-AD-FFTWCPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d-~~~~~~~~~~D~v~~~  181 (274)
                      .++.+||=.|+|. |..+..+++ .|.+ |+++|.+++..+.+++.-...-    +.... .+ +.+......+|+|+..
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~----i~~~~~~~~~~~~~~~~g~d~vid~  194 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL----AEPEVLAERQGGLQNGRGVDVALEF  194 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe----cCchhhHHHHHHHhCCCCCCEEEEC
Confidence            3567888887642 223344444 6775 9999999988888876432110    00000 00 1111223458998842


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -.     .   ...++...+.++++|.++....
T Consensus       195 ~G-----~---~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       195 SG-----A---TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CC-----C---hHHHHHHHHHhcCCCEEEEecc
Confidence            11     0   2346778889999999887653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.54  E-value=17  Score=30.06  Aligned_cols=75  Identities=21%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             CCCCeEEEEcCCcc-hhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021          107 LPKGRALVPGCGTG-YDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  170 (274)
                      ..++++|-.|+++| ..+.    .+++.|++|+.++.+....+..++.....   ..+.++.+|+.+..           
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~   84 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAE   84 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHH
Confidence            34678899998752 4443    44558899999888765433333332222   12456778887621           


Q ss_pred             CCCCeeEEEecccc
Q 024021          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~~D~v~~~~~~  184 (274)
                      ..++.|+++.+..+
T Consensus        85 ~~g~ld~lv~nAg~   98 (258)
T PRK07533         85 EWGRLDFLLHSIAF   98 (258)
T ss_pred             HcCCCCEEEEcCcc
Confidence            12468999987543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.47  E-value=20  Score=32.56  Aligned_cols=89  Identities=15%  Similarity=0.105  Sum_probs=55.4

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..|+.+|.+++.++.+++..       .+.++.+|..+.     ..-..+|.|++.
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            4666666  677766654    6889999999999877765422       367888888761     223568887753


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .     +++.....+....+.+.|.-.+++..
T Consensus        73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         73 T-----DSDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             c-----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            2     22233344455556665555555543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.14  E-value=2.6  Score=32.58  Aligned_cols=111  Identities=16%  Similarity=0.045  Sum_probs=62.6

Q ss_pred             eEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          111 RALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      +|-=||+  |..+..++    +.|..|++.|.+++..+...+..        .+. ..+..+..  ...|+|++.-.   
T Consensus         3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g--------~~~-~~s~~e~~--~~~dvvi~~v~---   66 (163)
T PF03446_consen    3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG--------AEV-ADSPAEAA--EQADVVILCVP---   66 (163)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT--------EEE-ESSHHHHH--HHBSEEEE-SS---
T ss_pred             EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh--------hhh-hhhhhhHh--hcccceEeecc---
Confidence            3444555  45555444    47999999999998776665442        111 12222211  23588884322   


Q ss_pred             cChhHHHHHHHH--HHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          187 IEPEMRAAWAQK--IKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~--~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                       +++....++..  +...|++|..++-..  .       ...-+..++.+.++.+|...++..
T Consensus        67 -~~~~v~~v~~~~~i~~~l~~g~iiid~s--T-------~~p~~~~~~~~~~~~~g~~~vdap  119 (163)
T PF03446_consen   67 -DDDAVEAVLFGENILAGLRPGKIIIDMS--T-------ISPETSRELAERLAAKGVRYVDAP  119 (163)
T ss_dssp             -SHHHHHHHHHCTTHGGGS-TTEEEEE-S--S---------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred             -cchhhhhhhhhhHHhhccccceEEEecC--C-------cchhhhhhhhhhhhhccceeeeee
Confidence             23556677777  888888777665432  1       111246788888888897666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=85.12  E-value=4.4  Score=35.01  Aligned_cols=92  Identities=22%  Similarity=0.339  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCC-CCCCeeEEE
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWC-PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~-~~~~~D~v~  179 (274)
                      .++.+||-.|||. |..+..+++ .|. .+++++.+++..+.+++...     +  .++..   ++.... ..+.+|+++
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-----~--~vi~~~~~~~~~~~~~~~~vd~vl  236 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-----D--ETVNLARDPLAAYAADKGDFDVVF  236 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-----C--EEEcCCchhhhhhhccCCCccEEE
Confidence            3567888888764 455555555 677 79999998888776655321     1  11111   111111 123589998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .....        ...++.+.+.|+++|.++...
T Consensus       237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         237 EASGA--------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             ECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            53221        124577889999999988754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK05872 short chain dehydrogenase; Provisional

Probab=84.97  E-value=18  Score=30.76  Aligned_cols=75  Identities=11%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  172 (274)
                      ..++++|-.|++.|.-   +..+++.|++|+.++.+++.++...+....   ..++..+.+|+.+..           ..
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4467888887655422   234445899999999988876665544422   134566678887621           11


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      +++|+++.+...
T Consensus        84 g~id~vI~nAG~   95 (296)
T PRK05872         84 GGIDVVVANAGI   95 (296)
T ss_pred             CCCCEEEECCCc
Confidence            468999987543

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=84.67  E-value=2.8  Score=36.35  Aligned_cols=94  Identities=16%  Similarity=0.223  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEEEe
Q 024021          108 PKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~D~v~~  180 (274)
                      ++.+||-.|+| .|..+..+++ .|. .+++++.++...+.+++....    .-+.....++.    .....+.+|+++.
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~i~~~~~~~~~d~vld  242 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT----DIINPKNGDIVEQILELTGGRGVDCVIE  242 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc----EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence            45678777764 3555555655 675 788888888777766643210    00111111111    1223356999885


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...-        ...+....+.|+++|.++...
T Consensus       243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         243 AVGF--------EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             ccCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence            3111        135677788999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=84.65  E-value=3.5  Score=35.68  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=54.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~D~v~~  180 (274)
                      .++.+||=.|+|. |..+..+++ .|++ |++++.+++..+.+++.-...    -+.....+   +.+......+|+|+.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF----VINSGQDDVQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence            4567888887632 222333444 6777 999999998888886542110    01111111   111222346999984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ...     .   ...+....+.|+++|.+++...
T Consensus       238 ~~g-----~---~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         238 CSG-----N---TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCC-----C---HHHHHHHHHHhhcCCEEEEEcC
Confidence            321     1   1234567788999999887553

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=84.26  E-value=3.7  Score=34.01  Aligned_cols=74  Identities=18%  Similarity=0.054  Sum_probs=49.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      .+++++|=.|+ +|..+..++    +.|++|+.++.++...+.........+  .++.++.+|+.+...           
T Consensus        10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~   86 (259)
T PRK08213         10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER   86 (259)
T ss_pred             cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45678888884 555555544    478899999998877666655543332  457889999986211           


Q ss_pred             CCCeeEEEeccc
Q 024021          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~~D~v~~~~~  183 (274)
                      .++.|.|+.+..
T Consensus        87 ~~~id~vi~~ag   98 (259)
T PRK08213         87 FGHVDILVNNAG   98 (259)
T ss_pred             hCCCCEEEECCC
Confidence            146899887654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=84.13  E-value=3.1  Score=35.72  Aligned_cols=86  Identities=17%  Similarity=0.129  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ++.+||=+||| .|..+.++++ .|++ +.++|.+++.++.+....          .+  |..+. ....+|+|+..-. 
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~i--~~~~~-~~~g~Dvvid~~G-  209 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------VL--DPEKD-PRRDYRAIYDASG-  209 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------cc--Chhhc-cCCCCCEEEECCC-
Confidence            45678888764 2444455555 6775 777898887776665321          00  11111 1246899884321 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                          .   ...++...++|+++|.+++.-.
T Consensus       210 ----~---~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       210 ----D---PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             ----C---HHHHHHHHHhhhcCcEEEEEee
Confidence                1   1345778889999999987654

>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria

Probab=83.79  E-value=11  Score=27.67  Aligned_cols=73  Identities=16%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ..+-+|+|+..+--   .+..+...|-.+.+.|..+|.+.+.....     +.+-+.++.++.+....+|+...+.....
T Consensus        42 ~ddvvD~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~-----gr~g~V~~~~I~eaA~taGL~~t~~~~v~  113 (127)
T PF11253_consen   42 YDDVVDVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKA-----GRPGHVEPSDIREAAPTAGLVQTKSCAVG  113 (127)
T ss_pred             ccccccEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCC-----CCCCCCCHHHHHHHHhhcCCeeeeeeccC
Confidence            34567888754332   23455667777888999999988877544     33455689999999999999998877654


Q ss_pred             c
Q 024021          251 L  251 (274)
Q Consensus       251 ~  251 (274)
                      .
T Consensus       114 ~  114 (127)
T PF11253_consen  114 D  114 (127)
T ss_pred             C
Confidence            3

>PRK07109 short chain dehydrogenase; Provisional

Probab=83.79  E-value=21  Score=31.00  Aligned_cols=73  Identities=14%  Similarity=0.016  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      .+++||=.|++.| ++    ..+++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            3467787776544 33    3445589999999998887776665554433  458888999877211           1


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      +++|+++.+..
T Consensus        84 g~iD~lInnAg   94 (334)
T PRK07109         84 GPIDTWVNNAM   94 (334)
T ss_pred             CCCCEEEECCC
Confidence            46899887654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=83.72  E-value=9.1  Score=34.16  Aligned_cols=67  Identities=22%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             CeEEEEcCCcchhHHHhh----CCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMA----SPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~----~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  180 (274)
                      ++||=|||  |..+...+    +.+ .+|+..|-+++.++.+......     +++....|+.+..    .-..+|+|+.
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence            47899999  55554433    355 7999999999988888776532     5888999987731    1135699986


Q ss_pred             ccc
Q 024021          181 YTF  183 (274)
Q Consensus       181 ~~~  183 (274)
                      ...
T Consensus        75 ~~p   77 (389)
T COG1748          75 AAP   77 (389)
T ss_pred             eCC
Confidence            544

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=83.61  E-value=3.9  Score=35.42  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEE---EcccCCCCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFL---KADFFTWCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~D~v~~  180 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++-++...+.+++..    ...-+...   ...+........+|+++.
T Consensus       158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~d~vld  233 (343)
T cd08236         158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG----ADDTINPKEEDVEKVRELTEGRGADLVIE  233 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC----CCEEecCccccHHHHHHHhCCCCCCEEEE
Confidence            3456888887654 455555555 6776 999998888777664321    10001111   111111233345999985


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     ..   ...+..+.++|+++|.++...
T Consensus       234 ~~-----g~---~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         234 AA-----GS---PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CC-----CC---HHHHHHHHHHhhcCCEEEEEc
Confidence            31     11   134577889999999987654

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.39  E-value=23  Score=28.92  Aligned_cols=68  Identities=19%  Similarity=0.149  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCC------------C
Q 024021          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTW------------C  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~------------~  170 (274)
                      .+..||-.||..|..+.++++    .|+.|++.--+-+ |.+.+.+.        ++.....|+.++            .
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~--------gl~~~kLDV~~~~~V~~v~~evr~~   77 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF--------GLKPYKLDVSKPEEVVTVSGEVRAN   77 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh--------CCeeEEeccCChHHHHHHHHHHhhC
Confidence            357899999999999887765    7889998876533 33333222        245566666541            2


Q ss_pred             CCCCeeEEEeccc
Q 024021          171 PTELFDLIFDYTF  183 (274)
Q Consensus       171 ~~~~~D~v~~~~~  183 (274)
                      +.++.|+.+.+.-
T Consensus        78 ~~Gkld~L~NNAG   90 (289)
T KOG1209|consen   78 PDGKLDLLYNNAG   90 (289)
T ss_pred             CCCceEEEEcCCC
Confidence            4566777776543

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=83.28  E-value=3.2  Score=34.53  Aligned_cols=43  Identities=16%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS  150 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~  150 (274)
                      ...+++|+-||+|..+..+...+..++.-|+++..+...+..+
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence            5689999999999999999888889999999998888877444

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK08324 short chain dehydrogenase; Validated

Probab=83.26  E-value=16  Score=35.36  Aligned_cols=72  Identities=15%  Similarity=-0.008  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  172 (274)
                      ++++||=.|++. ..+.    .+++.|++|+.+|.++...+.+.......   .++.++.+|+.+..           ..
T Consensus       421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            346788887643 3333    34457899999999988776665544322   35888899987621           02


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      +.+|+|+.+..
T Consensus       497 g~iDvvI~~AG  507 (681)
T PRK08324        497 GGVDIVVSNAG  507 (681)
T ss_pred             CCCCEEEECCC
Confidence            36899987654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=83.06  E-value=6.4  Score=36.47  Aligned_cols=95  Identities=16%  Similarity=0.258  Sum_probs=59.7

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------------
Q 024021          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----------------  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----------------  168 (274)
                      .++.+|+=+|+|.=.. +..+++ .|+.|+++|.+++..+.++..-        .+++..|..+                
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~  233 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF  233 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence            3568999999987533 333444 7889999999999888777631        2222222210                


Q ss_pred             ------CCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          169 ------WCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       169 ------~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                            ...  ...+|+|+....+..-+.+  .-+.+++.+.+|||+.++=
T Consensus       234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence                  011  2469999876644433222  2356778999999998774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=82.98  E-value=24  Score=30.35  Aligned_cols=101  Identities=12%  Similarity=-0.027  Sum_probs=57.9

Q ss_pred             CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHH--hhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++|+=+|+|.  |.++..|++.|..|+.++-+.+.++..++.  +..... ................+.||+|+..-=  
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK--   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACK--   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECC--
Confidence            4688888874  344566677888999999987666655432  111000 111111111111222357898884211  


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                         .......++.+...+.++..++....+.
T Consensus        80 ---~~~~~~al~~l~~~l~~~t~vv~lQNGv  107 (305)
T PRK05708         80 ---AYDAEPAVASLAHRLAPGAELLLLQNGL  107 (305)
T ss_pred             ---HHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence               1234567888999999999877766544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.92  E-value=19  Score=30.49  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=54.3

Q ss_pred             eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHh-------hcCCC-C--------cceEEEEcccCCCCCC
Q 024021          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELS-------SSLPN-A--------KFVSFLKADFFTWCPT  172 (274)
Q Consensus       111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~--------~~~~~~~~d~~~~~~~  172 (274)
                      +|-=+|+|.  +.++..++..|.+|+++|.+++.++.++..+       ...+. .        .++++ ..|..   ..
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---~~   80 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---DL   80 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---Hh
Confidence            566677763  3344555568889999999999987655322       11210 0        02221 22221   12


Q ss_pred             CCeeEEEecccccccCh--hHHHHHHHHHHhcccCCcEEEE
Q 024021          173 ELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      ...|+|+..     +++  +....++.++.+.++|+..+..
T Consensus        81 ~~aDlVi~a-----v~e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         81 KDADLVIEA-----ATENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             ccCCeeeec-----ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence            457888842     222  2335888999999999887744

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=82.85  E-value=2.5  Score=36.91  Aligned_cols=96  Identities=15%  Similarity=0.182  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee-
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD-  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D-  176 (274)
                      .++.+||=.|+|. |..+..+++ .|.+++++|.+++.++.+++.-..    .-+.....   |+.+    ......+| 
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~t~~~g~d~  240 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD----LTLNPKDKSAREVKKLIKAFAKARGLRS  240 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eEecCccccHHHHHHHHHhhcccCCCCC
Confidence            4567999999854 444455555 678999999999988888653211    00111111   1111    11122354 


Q ss_pred             ---EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ---~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                         +|+.     ....   ...+....++|++||++++...
T Consensus       241 ~~d~v~d-----~~g~---~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       241 TGWKIFE-----CSGS---KPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             CcCEEEE-----CCCC---hHHHHHHHHHHhcCCeEEEECc
Confidence               5552     1111   1345667788999999987654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.53  E-value=25  Score=28.62  Aligned_cols=73  Identities=10%  Similarity=-0.041  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ++.++|-.|++ |..+..    +++.|.+|+.++.++..+..+.+.....+  .++.++..|+.+...           .
T Consensus         4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45788888864 333333    34478899999998876665555443332  457888889875210           1


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      +++|.|+.+..
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            45799887643

>PRK12939 short chain dehydrogenase; Provisional

Probab=82.52  E-value=18  Score=29.39  Aligned_cols=73  Identities=15%  Similarity=-0.032  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      +++++|=.|+ +|..+..+    ++.|.++++++.+++.+..........+  .++.++.+|+.+...           .
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567886665 45555444    4478899999988776665555443332  468889999986211           1


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      +++|+|+.+..
T Consensus        83 ~~id~vi~~ag   93 (250)
T PRK12939         83 GGLDGLVNNAG   93 (250)
T ss_pred             CCCCEEEECCC
Confidence            46898887643

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.49  E-value=9.4  Score=32.81  Aligned_cols=87  Identities=21%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             CeEEEEcCCcc--hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          110 GRALVPGCGTG--YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G--~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .+|.=||+|.=  .++..+.+.|.  +|+++|.+++..+.+++.    +..  .. ...+..+.  ....|+|+..-   
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~--~~-~~~~~~~~--~~~aDvViiav---   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLG--DR-VTTSAAEA--VKGADLVILCV---   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCC--ce-ecCCHHHH--hcCCCEEEECC---
Confidence            46888887762  23344555563  899999999887776542    110  11 11121111  13578888543   


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                        +......+++.+...+++|..++
T Consensus        75 --p~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         75 --PVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             --CHHHHHHHHHHHHhhCCCCCEEE
Confidence              33334556677777788887554

>cd08293 PTGR2 Prostaglandin reductase

Probab=82.35  E-value=4.8  Score=34.91  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024021          110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~--G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~  181 (274)
                      .+||=.|+  |.|..+..+++ .|+ +|++++-+++..+.+++.+...   .-+.....++.+    .. ...+|+|+..
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~---~vi~~~~~~~~~~i~~~~-~~gvd~vid~  231 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD---AAINYKTDNVAERLRELC-PEGVDVYFDN  231 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc---EEEECCCCCHHHHHHHHC-CCCceEEEEC
Confidence            68888875  56667777766 787 7999999988877776643211   101111112211    12 2469999842


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      -.     ..    .+....++|+++|.++...
T Consensus       232 ~g-----~~----~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         232 VG-----GE----ISDTVISQMNENSHIILCG  254 (345)
T ss_pred             CC-----cH----HHHHHHHHhccCCEEEEEe
Confidence            11     11    2467788999999988754

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=82.27  E-value=3.2  Score=35.27  Aligned_cols=74  Identities=9%  Similarity=-0.039  Sum_probs=61.5

Q ss_pred             EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       135 ~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      -....+...+.++++.      .+|.+..+|+.+.   -+.+.+|.++...+-.++++.....+..++.+-+.+|..+++
T Consensus       291 P~yl~~~~YEsir~n~------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vif  364 (414)
T COG5379         291 PAYLDEGVYESIRQNL------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIF  364 (414)
T ss_pred             ChhhchhhHHHHHhhh------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEE
Confidence            3556677788888777      5689999999883   256789999999999999988999999999999999999887


Q ss_pred             EEc
Q 024021          212 LMF  214 (274)
Q Consensus       212 ~~~  214 (274)
                      -..
T Consensus       365 Rta  367 (414)
T COG5379         365 RTA  367 (414)
T ss_pred             ecc
Confidence            553

>PRK05867 short chain dehydrogenase; Provisional

Probab=82.26  E-value=26  Score=28.72  Aligned_cols=75  Identities=19%  Similarity=0.043  Sum_probs=48.7

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.-   +..+++.|.+|+.++.+++.++.....+...+  .++.++.+|+.+...           -
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3467889888765522   34445589999999998877766665554433  357788888875210           1


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      ++.|+++.+..
T Consensus        85 g~id~lv~~ag   95 (253)
T PRK05867         85 GGIDIAVCNAG   95 (253)
T ss_pred             CCCCEEEECCC
Confidence            35777776544

>PRK06701 short chain dehydrogenase; Provisional

Probab=82.26  E-value=22  Score=30.12  Aligned_cols=105  Identities=14%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ..++++|-.|++.|.   ++..+++.|.+|+.++.++. ..+.........+  .++.++.+|+.+...           
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            445788888865543   22344558999999887642 2333333333222  357889999876210           


Q ss_pred             CCCeeEEEecccccc-------cChhH-----------HHHHHHHHHhcccCCcEEEEEE
Q 024021          172 TELFDLIFDYTFFCA-------IEPEM-----------RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~-------~~~~~-----------~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      -..+|+++.+.....       .+.+.           ...+++.+.+.++++|.++...
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is  181 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG  181 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            135798886543321       11111           1244455566666777766654

>PRK05854 short chain dehydrogenase; Provisional

Probab=81.96  E-value=11  Score=32.32  Aligned_cols=77  Identities=16%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  172 (274)
                      ..++++|=.|++.|.-   +..|++.|++|+.+..+.+..+.+...+.......++.++.+|+.+..           ..
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            3457788888765532   234455899999999887766665554433211235888999997621           12


Q ss_pred             CCeeEEEeccc
Q 024021          173 ELFDLIFDYTF  183 (274)
Q Consensus       173 ~~~D~v~~~~~  183 (274)
                      ++.|+++.+..
T Consensus        92 ~~iD~li~nAG  102 (313)
T PRK05854         92 RPIHLLINNAG  102 (313)
T ss_pred             CCccEEEECCc
Confidence            46899997754

>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences

Probab=81.91  E-value=6.2  Score=40.10  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~  185 (274)
                      .+.++||+|+|.=.=...+..+...|+.+|.-|-+       .....+....+|++.|...  ..-..++|.+.|...++
T Consensus       822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~a-------e~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLG  894 (1289)
T PF06016_consen  822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFA-------EPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLG  894 (1289)
T ss_dssp             CC-CEEEET--TT-CHHHCS-TTSEEEEEESS--S-------SSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHH
T ss_pred             CcceEEEccCCccceeeeccCCCCceEEEecCCcc-------cccchhhhcceeeeeccccceeEecCCCCEEEEEeeeh
Confidence            35799999888866666667788899999997752       1223344678999999987  34456799999988876


Q ss_pred             cc---ChhHHHHHHHHHHhcccCCcE
Q 024021          186 AI---EPEMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       186 ~~---~~~~~~~~l~~~~~~L~pgG~  208 (274)
                      ..   ..-.+...++.+.+.+++.|.
T Consensus       895 AAaA~a~~tl~~~l~~~l~~~~~~~~  920 (1289)
T PF06016_consen  895 AAAASANVTLDAGLQQFLSQCVQANV  920 (1289)
T ss_dssp             HHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred             hhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence            53   112456778888888888774

The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=81.77  E-value=15  Score=31.59  Aligned_cols=93  Identities=15%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v  178 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++.+++..+.+++...       ..++..+-..     ......+|++
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~vd~v  230 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------TETVDPSREDPEAQKEDNPYGFDVV  230 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------eEEecCCCCCHHHHHHhcCCCCcEE
Confidence            3557888887642 444455555 6776 8999999888877754321       0122211111     1233568999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +....-        ...+..+.+.|+++|.++....
T Consensus       231 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         231 IEATGV--------PKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             EECCCC--------hHHHHHHHHHHhcCCEEEEEec
Confidence            953110        1356677888999999887643

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=81.76  E-value=2.1  Score=34.77  Aligned_cols=60  Identities=17%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ....-|.+||.|.|+.+..+.+.+. +...+|.++..+.-.+...+...  .+..+..+|+..
T Consensus        49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            4457899999999999999998776 78889998887776666554332  356666666643

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=81.69  E-value=4  Score=35.03  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=56.9

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024021          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~  180 (274)
                      .++.+||=.|  .|.|..+..+++ .|.++++++-+++..+.+++.-    ...-+.....|+.+   ....+.+|+|+.
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G----a~~vi~~~~~~~~~~v~~~~~~gvd~vld  217 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG----FDAVFNYKTVSLEEALKEAAPDGIDCYFD  217 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence            3457888777  455666666666 7889999999998888886632    10001111112211   111246898884


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .-  .       ...+....++|+++|.++...
T Consensus       218 ~~--g-------~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         218 NV--G-------GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CC--C-------HHHHHHHHHhhccCCEEEEEc
Confidence            21  1       124577889999999988653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=81.52  E-value=17  Score=31.09  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccccc
Q 024021          111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI  187 (274)
Q Consensus       111 ~vLDiG~G~G--~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~  187 (274)
                      +|-=||+|.=  .++..+++.|.+|++.|.+++.++.+.+..    .   ..  ..+..+.. .....|+|+..     +
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g----~---~~--~~s~~~~~~~~~~~dvIi~~-----v   67 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR----T---TG--VANLRELSQRLSAPRVVWVM-----V   67 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----C---cc--cCCHHHHHhhcCCCCEEEEE-----c
Confidence            4556777652  233455568889999999998877665421    0   00  01111111 11245888753     3


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ++.....+++.+...+++|-.+ +.. +..       ...+..+..+.+++.|...++.
T Consensus        68 p~~~~~~v~~~l~~~l~~g~iv-id~-st~-------~~~~t~~~~~~~~~~g~~~vda  117 (298)
T TIGR00872        68 PHGIVDAVLEELAPTLEKGDIV-IDG-GNS-------YYKDSLRRYKLLKEKGIHLLDC  117 (298)
T ss_pred             CchHHHHHHHHHHhhCCCCCEE-EEC-CCC-------CcccHHHHHHHHHhcCCeEEec
Confidence            4445567888888888887544 322 111       1124556666777788765553

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=81.37  E-value=17  Score=30.92  Aligned_cols=95  Identities=16%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             CeEEEEcCCc-c-hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC----------CC-C--------cceEEEEcccCC
Q 024021          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL----------PN-A--------KFVSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~-G-~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~----------~~-~--------~~~~~~~~d~~~  168 (274)
                      .+|.=+|+|. | .++..++..|.+|+.+|.+++.++.+++.....          +. .        .++.+. .|. .
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence            4577788874 2 233445568889999999999998776543221          10 0        011111 121 1


Q ss_pred             CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       169 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                        .-...|+|+..-. .  +.+....++.++.+.++++.+++.
T Consensus        82 --~~~~aDlVieav~-e--~~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         82 --SLSDADFIVEAVP-E--KLDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             --HhCCCCEEEEcCc-C--cHHHHHHHHHHHHhhCCCCeEEEE
Confidence              1134688884321 1  112356788889888888876543

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.32  E-value=5  Score=33.64  Aligned_cols=74  Identities=19%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             HHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHH
Q 024021          123 VVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIK  200 (274)
Q Consensus       123 ~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~  200 (274)
                      +..|.+.|  .+|+|+|.++..++.|.+.-.       +.-...+ .+..  ..+|+|+..     .|......+++++.
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-------~~~~~~~-~~~~--~~~Dlvvla-----vP~~~~~~~l~~~~   66 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-------IDEASTD-IEAV--EDADLVVLA-----VPVSAIEDVLEEIA   66 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-------SSEEESH-HHHG--GCCSEEEE------S-HHHHHHHHHHHH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-------eeeccCC-HhHh--cCCCEEEEc-----CCHHHHHHHHHHhh
Confidence            45566655  699999999999888865531       1112222 1111  346988853     34455567777888


Q ss_pred             hcccCCcEEEE
Q 024021          201 DFLKPDGELIT  211 (274)
Q Consensus       201 ~~L~pgG~~~~  211 (274)
                      ..+++|+.+.=
T Consensus        67 ~~~~~~~iv~D   77 (258)
T PF02153_consen   67 PYLKPGAIVTD   77 (258)
T ss_dssp             CGS-TTSEEEE
T ss_pred             hhcCCCcEEEE
Confidence            87777766543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=81.25  E-value=13  Score=30.92  Aligned_cols=92  Identities=18%  Similarity=0.134  Sum_probs=54.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++.+++..+.+++.-..    +.+.....   .......+|+|+....
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~~~~~~---~~~~~~~~d~vl~~~~  168 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPVAADTA---DEIGGRGADVVIEASG  168 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccccccch---hhhcCCCCCEEEEccC
Confidence            4457788788754 444445554 6777 99999998888877654200    11110000   1123346898884311


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .        ...+....+.++++|.++...
T Consensus       169 ~--------~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         169 S--------PSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             C--------hHHHHHHHHHhcCCcEEEEEe
Confidence            1        124567788899999988654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=80.87  E-value=5.6  Score=34.51  Aligned_cols=95  Identities=22%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-------cCCCCCCCCee
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-------FFTWCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~D  176 (274)
                      .++.+||-.|+|. |..+..+++ .|.+ +++++-+++..+.+++.. ..   .-+.....+       +........+|
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~~---~vi~~~~~~~~~~~~~~~~~~~~~~~d  236 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELG-AT---HTVNVRTEDTPESAEKIAELLGGKGPD  236 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-Cc---EEeccccccchhHHHHHHHHhCCCCCC
Confidence            4456777777653 444455555 6776 899988888777775531 10   001111111       11123345699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+....-        ...+....+.|+++|.++...
T Consensus       237 ~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         237 VVIECTGA--------ESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence            99853221        124577888999999988654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=80.74  E-value=6.8  Score=35.11  Aligned_cols=104  Identities=9%  Similarity=0.004  Sum_probs=60.2

Q ss_pred             CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      .+++=+|+|  ..+..++    +.+..++.+|.+..  +   +..     ..+..++.+|..+.     ..-++.+.|++
T Consensus       241 ~HvII~G~g--~lg~~v~~~L~~~g~~vvVId~d~~--~---~~~-----~~g~~vI~GD~td~e~L~~AgI~~A~aVI~  308 (393)
T PRK10537        241 DHFIICGHS--PLAINTYLGLRQRGQAVTVIVPLGL--E---HRL-----PDDADLIPGDSSDSAVLKKAGAARARAILA  308 (393)
T ss_pred             CeEEEECCC--hHHHHHHHHHHHCCCCEEEEECchh--h---hhc-----cCCCcEEEeCCCCHHHHHhcCcccCCEEEE
Confidence            567666554  4554443    46778999997521  1   111     12467899998762     12245676764


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      .     .+++.....+-...+.+.|+..++...              ..++-.+.++.+|-+.+
T Consensus       309 ~-----t~dD~~Nl~ivL~ar~l~p~~kIIa~v--------------~~~~~~~~L~~~GaD~V  353 (393)
T PRK10537        309 L-----RDNDADNAFVVLAAKEMSSDVKTVAAV--------------NDSKNLEKIKRVHPDMI  353 (393)
T ss_pred             c-----CCChHHHHHHHHHHHHhCCCCcEEEEE--------------CCHHHHHHHHhcCCCEE
Confidence            2     223333344455677788988888766              23344566666666543

>PRK06139 short chain dehydrogenase; Provisional

Probab=80.56  E-value=20  Score=31.20  Aligned_cols=74  Identities=15%  Similarity=0.062  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021          108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  173 (274)
                      .++++|=.|++.|.-   +..+++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+..           ..+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            456788777754422   23445589999999999888776666554433  35778888987621           125


Q ss_pred             CeeEEEeccc
Q 024021          174 LFDLIFDYTF  183 (274)
Q Consensus       174 ~~D~v~~~~~  183 (274)
                      .+|+++.+..
T Consensus        84 ~iD~lVnnAG   93 (330)
T PRK06139         84 RIDVWVNNVG   93 (330)
T ss_pred             CCCEEEECCC
Confidence            6899988754

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=80.44  E-value=12  Score=32.22  Aligned_cols=94  Identities=20%  Similarity=0.054  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+||-.|+| .|..+..+++ .|.++++++.+++..+.+++....    .-+.....+.... ..+.+|+++....-
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~-~~~~~d~vi~~~~~  235 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGAD----EVVDSGAELDEQA-AAGGADVILVTVVS  235 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCc----EEeccCCcchHHh-ccCCCCEEEECCCc
Confidence            345688888876 5555555555 688999999999888777543210    0011000011101 12468988843210


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                              ...+..+.+.|+++|.++...
T Consensus       236 --------~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         236 --------GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             --------HHHHHHHHHhcccCCEEEEEC
Confidence                    124567788999999888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=80.31  E-value=19  Score=27.78  Aligned_cols=119  Identities=18%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEecccccccC
Q 024021          117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       117 ~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~  188 (274)
                      .|+|..+..+++    .+.+|+++--++...+.          ..+++++.+|+.+..    .-..+|.|+....-..- 
T Consensus         5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~-   73 (183)
T PF13460_consen    5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK-   73 (183)
T ss_dssp             TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred             CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence            457877766654    78999999998874444          256999999998731    11368999865532211 


Q ss_pred             hhHHHHHHHHHHhcccCCc---EEEEEEccCCCCCCCC----------CcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          189 PEMRAAWAQKIKDFLKPDG---ELITLMFPISDHVGGP----------PYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                       +  ......+.+.++..|   ++++...+......+.          .+.....+..+.+++.|+..+-+..-
T Consensus        74 -~--~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~  144 (183)
T PF13460_consen   74 -D--VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRESGLNWTIVRPG  144 (183)
T ss_dssp             -H--HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred             -c--ccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence             1  233344444443333   2444444433322221          11123456677778888866655553

...

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.12  E-value=16  Score=31.10  Aligned_cols=96  Identities=15%  Similarity=0.079  Sum_probs=54.0

Q ss_pred             eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCC-C--------cceEEEEcccCCCCCC
Q 024021          111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPN-A--------KFVSFLKADFFTWCPT  172 (274)
Q Consensus       111 ~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~~-~--------~~~~~~~~d~~~~~~~  172 (274)
                      +|.=||+|.  +.++..+++.|.+|+.+|.+++.++.+.+....       .+. .        .++++. .|..+.  -
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~--~   79 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA--V   79 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh--h
Confidence            566777763  223344555889999999999999887754321       000 0        012211 222111  2


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ...|+|+..-. .  +......++.++.+.++++.++.+.
T Consensus        80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~~  116 (288)
T PRK09260         80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIATN  116 (288)
T ss_pred             cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEEc
Confidence            34688884322 1  1123456778888888887765443

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.08  E-value=31  Score=28.10  Aligned_cols=103  Identities=14%  Similarity=-0.022  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      .++++|-.|++ |..+.    .+++.|.+|+++..+. ...+.........+  .++.++.+|+.+...           
T Consensus         5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35678888864 33443    3444788998887654 23333333332222  357888899887211           


Q ss_pred             CCCeeEEEeccccccc---Ch--------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          172 TELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~---~~--------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      -+..|+++.+......   +.        .-...+++.+...++.+|.+++..
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            1357888765432211   00        112345666766666667666543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=80.05  E-value=18  Score=32.63  Aligned_cols=104  Identities=13%  Similarity=0.043  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..+.+|+=+|+|.=.. ....++ .|++|+++|.++.....+...    +    ....  +..+..  ...|+|+..-. 
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG-  259 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG-  259 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC-
Confidence            5678999999987332 233333 688999999998654444321    1    1111  121211  34699875321 


Q ss_pred             cccChhHHHHHHH-HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024021          185 CAIEPEMRAAWAQ-KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       185 ~~~~~~~~~~~l~-~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (274)
                            . ..++. .....+++|++++......        ..++.+.+.+.+.+
T Consensus       260 ------~-~~vI~~~~~~~mK~GailiN~G~~~--------~eId~~aL~~~~~~  299 (406)
T TIGR00936       260 ------N-KDVIRGEHFENMKDGAIVANIGHFD--------VEIDVKALEELAVE  299 (406)
T ss_pred             ------C-HHHHHHHHHhcCCCCcEEEEECCCC--------ceeCHHHHHHHHhh
Confidence                  1 23333 4778899999888765321        12456666665544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
3lcc_A	235	Structure Of A Sam-Dependent Halide Methyltransfera		7e-79
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		2e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		4e-04

>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From Arabidopsis Thaliana Length = 235

Iteration: 1
 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 4/223 (1%)
Query: 46  KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
           +N ++    NVI   P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL  +
Sbjct: 6   QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62
Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
            +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+K 
Sbjct: 63  SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182
Query: 225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
           YKV VS +EEVL P+GF+A+S+ +N  AI  RKG+EKLGRWK+
Sbjct: 183 YKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKK 225

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           LH     P G + L  GCG G   V +A  +P+  +  ++IS  +++KA E ++     K
Sbjct: 29  LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIK 87
Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRA--AWAQKIKDFLKPDGELITL 212
            V FL+A+ F+  P E  D  FD+ F C +   +++     + +K  LKP G +  +
Sbjct: 88  NVKFLQANIFSL-PFE--DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 89  WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148
           WD G  + II    Q     +   L  GCG GY    ++      VG++IS++ I+K +E
Sbjct: 35  WDSGSRSTIIPFFEQY-VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKE 93
Query: 149 LSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
                P+   +SF+K D  +     E F+ I         E  +RA    +IK  LK DG
Sbjct: 94  RGEG-PD---LSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRA--LNEIKRVLKSDG 147
Query: 208 -ELITLMFPIS 217
              I ++ P +
Sbjct: 148 YACIAILGPTA 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
3lcc_A	235	Putative methyl chloride transferase; halide methy	1e-72
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	4e-35
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	4e-29
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-21
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-20
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	4e-17
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-13
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-12
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-12
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	9e-12
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	3e-11
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-11
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	5e-11
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-10
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-10
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	4e-10
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	5e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-09
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	2e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	6e-09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	8e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-08
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-08
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	5e-08
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	6e-08
3i9f_A	170	Putative type 11 methyltransferase; structural gen	7e-08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	8e-08
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-07
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	9e-07
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	1e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-06
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	2e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-06
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	3e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	4e-06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	8e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	1e-05
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	1e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	1e-05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-05
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-05
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-05
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	4e-05
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	6e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	1e-04
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	1e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-04
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	2e-04
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-04
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-04
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	8e-04

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score =  221 bits (564), Expect = 1e-72
 Identities = 136/226 (60%), Positives = 169/226 (74%), Gaps = 1/226 (0%)

Query: 44  MGKNREEVENDNVIKSHPRVNKLQQLMHIE-SSGGWEKCWEEGLTPWDIGQPAPIIVHLH 102
           M + ++  +  N     P   ++   +H     GGWEKCWEE +TPWD G+  P+IVHL 
Sbjct: 1   MAEEQQNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLV 60

Query: 103 QSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL 162
            + +LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E   S P A++ SF+
Sbjct: 61  DTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFV 120

Query: 163 KADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222
           K D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGG
Sbjct: 121 KEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG 180

Query: 223 PPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
           PPYKV VS +EEVL P+GF+A+S+ +N  AI  RKG+EKLGRWK+ 
Sbjct: 181 PPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKKI 226

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252

 Score =  126 bits (316), Expect = 4e-35
 Identities = 50/249 (20%), Positives = 89/249 (35%), Gaps = 29/249 (11%)

Query: 43  KMGKNREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIV-HL 101
           K+  +   +  D        V K  Q++ +E    W++ W      +   Q   ++  HL
Sbjct: 5   KIHHHHHHMSLDMKEHPDAEVQK-NQVLTLE---DWKEKWVTRHISFHQEQGHQLLKKHL 60

Query: 102 HQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA---------EELSS 151
                   G R   P CG   ++   A     VVG+EIS+I I++          EE  +
Sbjct: 61  DTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLA 120

Query: 152 SLPNAKF-------VSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
            +  AK        +S      F      +  FD I+D     AI P     +A  I   
Sbjct: 121 EIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSL 180

Query: 203 LKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
           L+ + +  +  L +  + H  GPP+ V  ++ + +        +  ++   A+  R    
Sbjct: 181 LRKEFQYLVAVLSYDPTKH-AGPPFYVPSAELKRLFGT-KCS-MQCLEEVDALEERHKAW 237

Query: 261 KLGRWKRSV 269
            L      +
Sbjct: 238 GLDYLFEKL 246

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score =  108 bits (271), Expect = 4e-29
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 89  WDIGQPAPIIV-HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
               +    +  +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++  
Sbjct: 2   SHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYF 61

Query: 148 ELSSSLP-----------NAKFVSFLKADFFTWCPTEL--FDLIFDYTFFCAIEPEMRAA 194
                 P            A  +     DFF     ++      +D     A+  +MR  
Sbjct: 62  TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRER 121

Query: 195 WAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI-VDNKL 251
           + Q ++  +       LITL +  +    GPP+ V  +    V+    ++   +   + L
Sbjct: 122 YVQHLEALMPQACSGLLITLEYDQALL-EGPPFSVPQTWLHRVMSG-NWEVTKVGGQDTL 179

Query: 252 AIGPRKGREKLGRWKRSV 269
               R  +  L R    V
Sbjct: 180 HSSARGLKAGLERMDEHV 197

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 81  CWEEGL--TPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEI 138
             +E      +++ +    ++   +   +  G+ L  GCG G + + +A+    V   + 
Sbjct: 5   IRDENYFTDKYELTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDK 62

Query: 139 SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQK 198
           + ++I   E + S   N   +     D         +D I        +E +        
Sbjct: 63  NAMSIANVERIKSI-ENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIAN 121

Query: 199 IKDFLKPDGELITLMFPISDHVGGPP 224
           ++   KP G  + +    +       
Sbjct: 122 MQRCTKPGGYNLIVAAMDTADYPCTV 147

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 84.2 bits (208), Expect = 6e-20
 Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 11/164 (6%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W++ + +    +   +P   +V    +  +P+G+ L    G G +   +AS    V  ++
Sbjct: 2   WDERFSQSEYVYG-TEPNDFLVS--VANQIPQGKILCLAEGEGRNACFLASLGYEVTAVD 58

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWA 196
            S + + KA++L+        ++ ++++   +    + ++ I     FC +   +R    
Sbjct: 59  QSSVGLAKAKQLAQEKGVK--ITTVQSNLADFDIVADAWEGIVS--IFCHLPSSLRQQLY 114

Query: 197 QKIKDFLKPDGELITLMF---PISDHVGGPPYKVSVSDYEEVLQ 237
            K+   LKP G  I   F    +  + GGP     +   E +  
Sbjct: 115 PKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQS 158

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 78.1 bits (192), Expect = 4e-17
 Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 8/164 (4%)

Query: 67  QQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVH------LHQSGALPKGRALVPGCGTG 120
           Q    +E+     +C        +                +  +  +   + L  GCG G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 121 YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD 180
            + + ++     V   + ++ +I    E          +S    D       E +D I  
Sbjct: 133 RNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQENYDFIVS 190

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
              F  +  E   +  + +K+     G  + +    +D V  P 
Sbjct: 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPL 234

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 67.4 bits (164), Expect = 1e-13
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)

Query: 78  WEKCW--EEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVV 134
           W++ +       P+D          L +    P+ R LV GCG       +       V 
Sbjct: 10  WDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVT 69

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRA 193
            ++ S + +   +   + +P    + +   D      P+  FD++ +     A+    R 
Sbjct: 70  SVDYSSVVVAAMQACYAHVPQ---LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERD 126

Query: 194 AWA-------------QKIKDFLKPDGELI 210
            W               ++   L P G  I
Sbjct: 127 PWTVSSEGVHTVDQVLSEVSRVLVPGGRFI 156

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 14/144 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
               G  L  G GTG     +AS    + GLE +   ++ A +     P+   V+F    
Sbjct: 39  TGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---HPS---VTFHHGT 92

Query: 166 FFTW-CPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-----ISD 218
                   + +  +   Y+       E+  A    ++  ++  G L+   F         
Sbjct: 93  ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALV-ALRMAVEDGGGLLMSFFSGPSLEPMY 151

Query: 219 HVGGPPYKVSVSDYEEVLQPMGFQ 242
           H     Y+  + +  + L+  GFQ
Sbjct: 152 HPVATAYRWPLPELAQALETAGFQ 175

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 63.9 bits (155), Expect = 3e-12
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 21/190 (11%)

Query: 71  HIESSGGWEKCWEE-----GLTPWDIGQPAPIIVHLHQSGAL--PKGRALVPGCGTGYDV 123
            I  +  WE+ W +         WD      ++V L +   L  P+   +   CG G   
Sbjct: 12  DINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQT 71

Query: 124 VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFTWCPTELFDL-IFD 180
             ++     V+GL++S  A++ A + +++  N  +  +  L  +      +E+ D  I+ 
Sbjct: 72  KFLSQFFPRVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---------PISDHVGGPPYKVSVSD 231
            T F  I  E R    Q ++  L   G +  +            + +  G  PY++    
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELL-LV 189

Query: 232 YEEVLQPMGF 241
            E  ++P  F
Sbjct: 190 MEHGIRPGIF 199

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 61.8 bits (150), Expect = 9e-12
 Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 11/141 (7%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              + L  GCG GY   AM +    V   + S     +A                   F 
Sbjct: 43  AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFH 95

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP----ISDHVGGP 223
                + +D ++ +     +  +  A   + I   LKP G              D +   
Sbjct: 96  QLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARY 155

Query: 224 PYKVSVSDYEEVLQPMGFQAI 244
               S           G  A 
Sbjct: 156 YNYPSEEWLRARYAEAGTWAS 176

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTE 173
             G G D   +A   + V   ++ + A+ K  +      + N + +     +   +    
Sbjct: 30  TMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREP 89

Query: 174 LFDLIFDYTFFCAIEPEMRAAWA------QKIKDFLKPDGELITLMFPISDHVGGPPYKV 227
           +   IF+  +  + +  +           +KI D L+  G L  +++    H GG   K 
Sbjct: 90  IRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY--GHDGGDMEKD 147

Query: 228 SVSDYEEVLQPMGFQAISI 246
           +V +Y   L    F A+  
Sbjct: 148 AVLEYVIGLDQRVFTAMLY 166

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 14/151 (9%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
                +   CG G D   +AS       V G +I D AI    +  + L     V+ +K 
Sbjct: 22  EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81

Query: 165 DF--FTWCPTELFDLI-FDYTFFCAIE------PEMRAAWAQKIKDFLKPDGELITLMFP 215
                          + F+  +  + +      PE       K  + L   G +  +++ 
Sbjct: 82  GHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141

Query: 216 ISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246
                 G   K  V ++ + +    F     
Sbjct: 142 --GGDTGFEEKEKVLEFLKGVDQKKFIVQRT 170

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 59.9 bits (145), Expect = 5e-11
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 10/120 (8%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
               +G  L    GTGY    ++     V  L+ S   I +A      L N   V F + 
Sbjct: 43  AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--HGLDN---VEFRQQ 97

Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           D F W P   +D +F   +   +  +   A+ + ++  + P G +        D      
Sbjct: 98  DLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE-----FVDVTDHER 152

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLK 163
             G  L    G G            V  LE+S        K+  E  +        + ++
Sbjct: 82  VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQ 139

Query: 164 ADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            D   +   + F  +         ++   R      +++ L+P G+ +
Sbjct: 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  L  G GTG     +    PE     +++S+  ++ A+           V +++
Sbjct: 42  DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLK---VKYIE 98

Query: 164 ADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
           AD+  +   E +D++        +E E +    ++    LK  G  I      +D V G 
Sbjct: 99  ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI-----NADLVHGE 153

Query: 224 P---YKVSVSDYEEVLQPMGF 241
                 ++ + + + ++  G 
Sbjct: 154 TAFIENLNKTIWRQYVENSGL 174

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 82  WEEGLTPWD-IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD 140
           W     P++       + + L    +      L  GC  G     +A   + +  +++  
Sbjct: 27  WRLDDNPFERERHTQLLRLSL---SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMP 83

Query: 141 IAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE----PEMRAAWA 196
            AI +A + +    +   +S+   D   +   ELFDLI        +             
Sbjct: 84  RAIGRACQRTKRWSH---ISWAATDILQFSTAELFDLI---VVAEVLYYLEDMTQMRTAI 137

Query: 197 QKIKDFLKPDGELI 210
             +   L P G L+
Sbjct: 138 DNMVKMLAPGGHLV 151

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 42/211 (19%)

Query: 97  IIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSS 152
           +   L  +G L +  + L  G G G     +    ++   +  L I+ +  K+ EE ++ 
Sbjct: 70  LASELAMTGVLQRQAKGLDLGAGYGGAARFLV--RKFGVSIDCLNIAPVQNKRNEEYNNQ 127

Query: 153 LPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGEL 209
              A  ++     F    C    +D I+      A    P+    + +     LKP G +
Sbjct: 128 AGLADNITVKYGSFLEIPCEDNSYDFIW---SQDAFLHSPDKLKVFQE-CARVLKPRGVM 183

Query: 210 ITLMFPISDHVGGP-----------PYKVSVSDYEEVLQPMGFQAISIVD---------- 248
                   D +                  S+  Y  + +  G   +              
Sbjct: 184 AITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 243

Query: 249 --------NKLAIGPRKGREKLGRWKRSVRH 271
                       I      E     KR + H
Sbjct: 244 KVKAELIKRSSEIASFCSPEFQANMKRGLEH 274

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 21/149 (14%), Positives = 41/149 (27%), Gaps = 8/149 (5%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAE 147
             D  + A  +  L +  +      L   CGTG  +  +A     V GLE+S   +  A 
Sbjct: 30  GKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIAR 89

Query: 148 ELSSSLPNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKP 205
                            D   +     F  +     +           A  ++    + P
Sbjct: 90  R------RNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLP 143

Query: 206 DGELITLMFPISDHVGGPPYKVSVSDYEE 234
           DG ++   +   ++           +   
Sbjct: 144 DGVVVVEPWWFPENFTPGYVAAGTVEAGG 172

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 11/119 (9%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSS 152
           +     +       R L   CGTG   + +A     VVGL++      +A +KA+E +  
Sbjct: 30  VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 + FL+ D         FD +   ++     + E       K+ + LKP G  I
Sbjct: 90  ------IEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I+       L     L   CGTG     +    +    +++S      A  K        
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK- 85

Query: 154 PNAKFVSFLKADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                      D         FDLI     +    I+ +    + + + + LK  G  I
Sbjct: 86  -----PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
           P        CG   +++A+     P   +VG++    A+  A  L++    A  ++  + 
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177

Query: 165 DFFTWCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           D +     E +DL+  +       +        ++    LKP G L+T
Sbjct: 178 DAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 12/157 (7%)

Query: 92  GQPAPIIVHL--HQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEE 148
               P +     + + +      L  G G     +++   + Y   G+EISD+ +KKAE 
Sbjct: 5   IIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN 64

Query: 149 LSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
            S    N   ++  K D     F     E    ++ Y     +          +IK  LK
Sbjct: 65  FSRE--NNFKLNISKGDIRKLPF---KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF 241
           P G          D       K+   ++ ++ +    
Sbjct: 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKV 156

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 25/147 (17%)

Query: 116 GCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLKAD----- 165
           G G G+ +  ++     +  V  +++ +  +  A E      L N   V  LK++     
Sbjct: 45  GTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN---VEVLKSEENKIP 101

Query: 166 FFTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
                P    D I             E      + +K   KP   L  + +   +   GP
Sbjct: 102 L----PDNTVDFI---FMAFTFHELSEPLKFLEE-LKRVAKPFAYLAIIDWKKEERDKGP 153

Query: 224 P--YKVSVSDYEEVLQPMGFQAISIVD 248
           P     S  +   +L+  G +   +V+
Sbjct: 154 PPEEVYSEWEVGLILEDAGIRVGRVVE 180

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSL 153
           I  L +S        L   CGTG  +           GLE+S      A K+  +     
Sbjct: 30  IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPD----- 84

Query: 154 PNAKFVSFLKADFFTWCPTELFDLIF--DYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 +  + D   +     F  +     +       E   A      + L+P G ++
Sbjct: 85  -----ATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 60/238 (25%)

Query: 81  CWEEGLTPWDIGQPAPIIVH--LHQSGALPKGRALVPGCGTGYDVVAMASPERY---VVG 135
            WE+      +      +    +         R L  GCG G   V +A        V G
Sbjct: 32  YWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLA--TARDVRVTG 89

Query: 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--- 188
           + IS   + +A   +++   A  V+F  AD     F       FD ++      A+E   
Sbjct: 90  ISISRPQVNQANARATAAGLANRVTFSYADAMDLPF---EDASFDAVW------ALESLH 140

Query: 189 --PEMRAAWAQKIKDFLKPDGELIT---------------LMFPISDHVGGPPYKVSVSD 231
             P+ R    +++   L+P G +                  +       GG      + +
Sbjct: 141 HMPD-RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAG-GGVLSLGGIDE 198

Query: 232 YEEVLQPMGFQAISIVD------------------NKLAIGPRKGREKLGRWKRSVRH 271
           YE  ++       S VD                   +  + P  G E L R   + R 
Sbjct: 199 YESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATFRG 256

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERY-VVGLEIS----DIAIKKAEELSSSLPNAKFVSFL 162
           P  R    GCGTG   + +A  + Y V G+++S    +IA +KA E +        V F 
Sbjct: 33  PGKRIADIGCGTGTATLLLA--DHYEVTGVDLSEEMLEIAQEKAMETNRH------VDFW 84

Query: 163 KADFFTWCPTELFDLI--FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
             D       E  D I     +                    L   G+L+
Sbjct: 85  VQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 53.2 bits (127), Expect = 2e-08
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 5/104 (4%)

Query: 116 GCGTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT 172
           GCG G D++    +      G++I++++I  A   + ++     V F   D +       
Sbjct: 72  GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG 131

Query: 173 ELFDLIFD-YTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMF 214
           + FD+I   ++F  A           + I   L+P G  I  + 
Sbjct: 132 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 11/105 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
           P+ R L  GCG G D              + S   +K A     + P+A    +      
Sbjct: 48  PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARA---NAPHADVYEWNGKGEL 104

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                  F LI       ++   +             PD   + +
Sbjct: 105 PAGLGAPFGLIVSRRGPTSVILRLPEL--------AAPDAHFLYV 141

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 35/168 (20%), Positives = 55/168 (32%), Gaps = 32/168 (19%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L      P    L  GCGTG     +A     V+G + +   I+KA +   + P+   + 
Sbjct: 50  LQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQ---NYPH---LH 103

Query: 161 FLKADFFTWCPTELFDLIF-DYTF-FCAIEPEMRAAWAQKIKDFLKPDGELITLMF---- 214
           F  AD   +   +  D +F +    +     E  AA A  I   LK  G  +        
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWV---KEPEAAIAS-IHQALKSGGRFVAEFGGKGN 159

Query: 215 ----------------PISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246
                             +     P Y  S+ +Y  +L+  GF     
Sbjct: 160 IKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYA 207

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 34/197 (17%)

Query: 73  ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERY 132
           E    +E  +  G      G        L         + L  G G G   + +   E+Y
Sbjct: 22  EGVKVYEFIF--GENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYIN--EKY 77

Query: 133 ---VVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTWCPTELFDLIFDYTFFCAI 187
                G++I    +  A E  S      F     L  +F    P   FDLI+      A+
Sbjct: 78  GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF----PENNFDLIYSRDAILAL 133

Query: 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK----------------VSVSD 231
             E +    QK   +LKP G L+     I+D+                       ++V +
Sbjct: 134 SLENKNKLFQKCYKWLKPTGTLL-----ITDYCATEKENWDDEFKEYVKQRKYTLITVEE 188

Query: 232 YEEVLQPMGFQAISIVD 248
           Y ++L    F+ +   D
Sbjct: 189 YADILTACNFKNVVSKD 205

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF- 166
            +G+ L   CG G     +      VVG++IS+  I+KA E + S  +   V F+  D  
Sbjct: 38  KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDAR 95

Query: 167 ---FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP 223
              F     + FD +         EP       ++++  LKP G+ I     + + +   
Sbjct: 96  KLSF---EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL 152

Query: 224 PYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268
              + V     + + +  Q    V  +        R +   W ++
Sbjct: 153 KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKT 197

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
             G  L  G GTG     +    R V G+E S      A+E    LP     S  + DF 
Sbjct: 45  SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKE---KLPKE--FSITEGDFL 99

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
           ++      D I     F  +  + +     K    L   G+++      +D +    
Sbjct: 100 SFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIV-----FADTIFADQ 151

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 52.0 bits (124), Expect = 5e-08
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKF 158
            +         RAL  G G G     + +        LE     +++A+   + +P  KF
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKF 144

Query: 159 VSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
           +    A   T   P   +DLI        +       + +  +  L P+G + 
Sbjct: 145 I---LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
            A II  L         + L  G   G     +A    +  V  +E +   +++  +  +
Sbjct: 60  AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA 119

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +P       +  K FLK  G  + 
Sbjct: 120 EREN---IIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMI 176

Query: 212 LMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            +   S  V   P K    + +E+L+  GF+ +  VD
Sbjct: 177 AIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVD 212

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 18/151 (11%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GCG G+    +      +  ++I+ IA+K+ +E          V  L +D     P E+ 
Sbjct: 25  GCGNGFYCKYLLEFATKLYCIDINVIALKEVKE------KFDSVITL-SD-----PKEIP 72

Query: 176 DLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE 233
           D   D+  F     + + +     ++K  LK DG +I + +   +   GPP  + + + +
Sbjct: 73  DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKD 132

Query: 234 EVLQPMGFQAISIVD----NKLAIGPRKGRE 260
            +     F      +    +   +  RK  E
Sbjct: 133 YMGWFSNFVVEKRFNPTPYHFGLVLKRKTSE 163

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 7/157 (4%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSS 151
           A ++  L +       R L  G  +G     M+    P   + G+E +   ++    +  
Sbjct: 64  AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              N   +  +  D              D  +    +PE  A   +  + FL+  G ++ 
Sbjct: 124 DRRN---IFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYML- 179

Query: 212 LMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
           +                     + L   G +   +V 
Sbjct: 180 MAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH 216

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 37/182 (20%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKA-------EELS 150
           L   G+L     L  GCGTG DV   +        V+G+++ D  ++ A        E  
Sbjct: 76  LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135

Query: 151 SSLPNAKFVSFLKADFFTWC-------PTELFDLIFDYTFFCAIE--PEMRAAWAQKIKD 201
              P+   V FLK              P    D++      C         A + + I  
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIV---ISNCVCNLSTNKLALFKE-IHR 191

Query: 202 FLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            L+  GEL       +D                     + + D+  ++   GF+ + +V 
Sbjct: 192 VLRDGGELY-FSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250

Query: 249 NK 250
             
Sbjct: 251 VG 252

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 37/166 (22%), Positives = 54/166 (32%), Gaps = 32/166 (19%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           L Q            GCG G     +        + G++  D  ++KA +    LPN   
Sbjct: 26  LAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---LPN--- 79

Query: 159 VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---- 214
            +F KAD  TW P +  DL++    F  + P+  A  +Q + D L+  G L   M     
Sbjct: 80  TNFGKADLATWKPAQKADLLYANAVFQWV-PDHLAVLSQ-LMDQLESGGVLAVQMPDNLQ 137

Query: 215 ------------------PISDHVGGPPYKVSVSDYEEVLQPMGFQ 242
                               S            SDY   L P   +
Sbjct: 138 EPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 30/188 (15%), Positives = 52/188 (27%), Gaps = 36/188 (19%)

Query: 84  EGLTPWDIGQPAPIIVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEIS 139
             +     G P   +  L     L +       GCGTG   + +A        V GL+  
Sbjct: 21  SNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLA--GHVTGQVTGLDFL 78

Query: 140 DIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAW 195
              I      +        V+ +        F     E  DLI+       I  E R   
Sbjct: 79  SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF---RNEELDLIWSEGAIYNIGFE-RG-- 132

Query: 196 AQKIKDFLKPDGELITLMFPISDHVGGP---------------PYKVSVSDYEEVLQPMG 240
             + + +LK  G L      +S+                    P   ++ +    +   G
Sbjct: 133 LNEWRKYLKKGGYLA-----VSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG 187

Query: 241 FQAISIVD 248
           +  ++   
Sbjct: 188 YLPVATFI 195

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
              G  L  G   G     +      +  +E S+ AI  A+           ++++ + F
Sbjct: 41  FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGR-----LKDGITYIHSRF 95

Query: 167 FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210
                   +D I        +E   +  A   +   D+L   G L 
Sbjct: 96  EDAQLPRRYDNI---VLTHVLEHIDDPVALLKRINDDWLAEGGRLF 138

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 96  PIIVHLHQSGALPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSS 151
             I  L +            GC  G   ++       P   ++G++ S   +++  +  +
Sbjct: 46  TAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA 105

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           +  +   V  L  D           ++        + PE R A   KI + L P+G L+ 
Sbjct: 106 AYHSEIPVEILCNDIRHVEIKN-ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 164

Query: 212 LMFPISDH 219
                 + 
Sbjct: 165 SEKFRFED 172

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 7/147 (4%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
                  AL  G G G     +  P  R V  ++I++  + +A+         +  ++  
Sbjct: 76  NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGE-EGKRVRNYFC 134

Query: 164 ADFFTWCPTE-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222
                + P    +D+I+       +  +  A + ++ K  L+P+G ++       + V  
Sbjct: 135 CGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194

Query: 223 PPYKVSV----SDYEEVLQPMGFQAIS 245
                SV         ++   G   ++
Sbjct: 195 DDVDSSVCRDLDVVRRIICSAGLSLLA 221

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
              R L  GCG G  +          +G++I++  IK  E         KF + +K+D  
Sbjct: 41  GCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG--------KF-NVVKSDAI 91

Query: 168 TW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            +    P +  D +    F   ++PE            +K    ++
Sbjct: 92  EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 17/114 (14%)

Query: 108 PKGRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLK 163
            +G  +  GCG G     +   +P+  VV ++ S +A+  +     ++         F+ 
Sbjct: 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 281

Query: 164 ADFFTWCPTELFDLIFDYTFFC--------AIEPEMRAAWAQKIKDFLKPDGEL 209
            +  +      F+ +      C        A+   +        +  LK +GEL
Sbjct: 282 NNALSGVEPFRFNAV-----LCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 330

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 33/177 (18%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKF 158
           ++     +  G  +  G G G   +A+A   +  +  L+ S    + A +  +       
Sbjct: 35  NIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR 94

Query: 159 VSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITL 212
           +  ++ D              DLI       ++    ++  A+ + I   LK  G+    
Sbjct: 95  IQIVQGDVHNIPI---EDNYADLI---VSRGSVFFWEDVATAFRE-IYRILKSGGKTYIG 147

Query: 213 ----MFPISDHVGGPPYKV---------------SVSDYEEVLQPMGFQAISIVDNK 250
                  + D +     +                +V  ++ VL  +G  +  I+   
Sbjct: 148 GGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGD 204

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 26/167 (15%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPN 155
            +     L    +    GCGTG   + +A  +     + G+++    I+   E +     
Sbjct: 37  AVSFINELTDDAKIADIGCGTGGQTLFLA--DYVKGQITGIDLFPDFIEIFNENAVKANC 94

Query: 156 AKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
           A  V  +        F     E  DLI+       I  E       +   +LK  G +  
Sbjct: 95  ADRVKGITGSMDNLPF---QNEELDLIWSEGAIYNIGFE---RGMNEWSKYLKKGGFIAV 148

Query: 212 -----LMFPISDHVGGP-----PYKVSVSDYEEVLQPMGFQAISIVD 248
                        +        P    +    + ++  G+   +   
Sbjct: 149 SEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
              I+  L  +      + L  G  +G  +  ++          G+E S   +++   ++
Sbjct: 62  AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA 121

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              PN   +  L AD       +      D  +    +P+         K FLK +G+++
Sbjct: 122 QRRPN---IFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDML 178

Query: 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
            ++   S  V   P ++      E L+   F+ I I++
Sbjct: 179 LVIKARSIDVTKDPKEI-YKTEVEKLENSNFETIQIIN 215

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 116 GCGTGYDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170
            CGTG D + +      V  ++ S      A+K+           K+V   +A++ T   
Sbjct: 65  ACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWV-IEEANWLTLDK 123

Query: 171 ---PTELFDLI------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                + FD +      F +      +        + I   ++P G L+
Sbjct: 124 DVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 104 SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
              LP+GR +  G GTG      A P +  +G+E S+   + A +        + V  LK
Sbjct: 43  KCLLPEGRGVEIGVGTGR----FAVPLKIKIGVEPSERMAEIARK--------RGVFVLK 90

Query: 164 ADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP 215
                        E FD          I    +   A   +    LK  G LI  +  
Sbjct: 91  GTAENLPL---KDESFDFA---LMVTTICFVDDPERALK-EAYRILKKGGYLIVGIVD 141

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 21/149 (14%)

Query: 100 HLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS--LP 154
            LH     P G + L  GCG G   V +A   P+  +  ++IS  +++KA E +    + 
Sbjct: 28  LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK 87

Query: 155 NAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGE 208
           N   V FL+A+     F       FD I        +E       A    +K  LKP G 
Sbjct: 88  N---VKFLQANIFSLPF---EDSSFDHI---FVCFVLEHLQSPEEALKS-LKKVLKPGGT 137

Query: 209 LITLMFPISDHVGGPPYKVSVSDYEEVLQ 237
           +  +          P  K ++  +  +++
Sbjct: 138 ITVIEGDHGSCYFHPEGKKAIEAWNCLIR 166

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 94  PAPIIVHLHQ--SGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151
           P  I  H+    S +      +   CG G + +  A     V+ ++I  + I  A   + 
Sbjct: 62  PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAE 121

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELI 210
               A  + F+  DF         D++F    +    P+   A    I+  + PDG E+ 
Sbjct: 122 VYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG--PDYATAETFDIRTMMSPDGFEIF 179

Query: 211 TLMFPISDHVG 221
            L   I++++ 
Sbjct: 180 RLSKKITNNIV 190

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 26/163 (15%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIK 144
             D      II+     G  P    L  G G+G     +      +  +  +E  +  +K
Sbjct: 96  EIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK 149

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
           KA +  S   +   V   ++D   +   +++D +          P+      + I   +K
Sbjct: 150 KAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI------PDPWNHVQK-IASMMK 202

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
           P       +          P           L   G   +  V
Sbjct: 203 PGSVATFYL----------PNFDQSEKTVLSLSASGMHHLETV 235

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 105 GALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163
               +   L  GCG G+  +  A    + V+G+++S+  + +A+  ++S      V + +
Sbjct: 41  PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV----VCYEQ 96

Query: 164 ADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                     + ++++   +              +K+   LK  G  I
Sbjct: 97  KAIEDIAIEPDAYNVVL--SSLALHYIASFDDICKKVYINLKSSGSFI 142

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 39/244 (15%)

Query: 50  EVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWE--------EGLTPWDIGQPAP----- 96
           + E+   I     +N    L+  +         E        E  +PW+  +        
Sbjct: 49  DFESAKHILDDAEMNHALSLI-RKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRY 107

Query: 97  --IIVHLHQSGALPKG-RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSS 151
             ++ +    G   +G RA+  G G       + S      V  +EI     + + ++  
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167

Query: 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI- 210
            L     V+ +  D       E FD++       A   E +    + I  ++  +  +I 
Sbjct: 168 GLGVDG-VNVITGDETVIDGLE-FDVLMV-----AALAEPKRRVFRNIHRYVDTETRIIY 220

Query: 211 -------TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG 263
                   +++            ++      V+ P G    + V         +   KL 
Sbjct: 221 RTYTGMRAILYAPVS-----DDDITGFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSKLE 275

Query: 264 RWKR 267
               
Sbjct: 276 GKPI 279

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 26/195 (13%), Positives = 58/195 (29%), Gaps = 48/195 (24%)

Query: 93  QPAP---IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEEL 149
           +P      ++   +   L     L  G  TG  +         VV  +++  A++     
Sbjct: 5   EPGEDTYTLMDALEREGLEMKIVLDLGTSTGV-ITEQLRKRNTVVSTDLNIRALE----- 58

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA------QKIKDFL 203
                + +  + ++AD       E  D++     +     +            + I  F+
Sbjct: 59  -----SHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD--PIIGGGYLGREVIDRFV 111

Query: 204 K--PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM---GFQAISIVDNKLAIGPRKG 258
                G L   +  I             +  +EVL  +   G+    +   K+       
Sbjct: 112 DAVTVGML--YLLVIEA-----------NRPKEVLARLEERGYGTRILKVRKI------L 152

Query: 259 REKLG--RWKRSVRH 271
            E +   + ++S  H
Sbjct: 153 GETVYIIKGEKSHHH 167

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 32/189 (16%)

Query: 75  SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVV 134
           +   ++ W+ G            I+   +     +   L  GCG GY    ++      V
Sbjct: 28  NQNSQEMWDSGSRST--------IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAV 79

Query: 135 GLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFDYTFFCAIEPE 190
           G++IS++ I+K +E          +SF+K D     F     E F+ I           E
Sbjct: 80  GVDISEVMIQKGKERGEGPD----LSFIKGDLSSLPF---ENEQFEAIMAINSLEWT-EE 131

Query: 191 MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----------VSVSDYEEVLQPM 239
              A  + IK  LK DG     +   +       Y            +   ++E++++  
Sbjct: 132 PLRALNE-IKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190

Query: 240 GFQAISIVD 248
           GF+ +  + 
Sbjct: 191 GFKVVDGIG 199

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP 154
           I+  L +         L  GCG GY   A A   PE    GL++S +AIK A   +   P
Sbjct: 74  IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA---AKRYP 130

Query: 155 NAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211
              F     A            D I      C  E E+           +KP G +IT
Sbjct: 131 QVTFCV---ASSHRLPFSDTSMDAIIRIYAPCKAE-ELARV--------VKPGGWVIT 176

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 116 GCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172
           G G+G  +   A    +     G+++S +   +A+  +  L  ++ V F+  D   +   
Sbjct: 44  GSGSGEMLCTWA--RDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101

Query: 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL----ITLMFPISD-------HVG 221
           E  D+               A   + +   LKP G +           +         V 
Sbjct: 102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVS 159

Query: 222 GPPYKVSVSDYEEVLQPMGF 241
                +++         +G+
Sbjct: 160 STSDFLTLPGLVGAFDDLGY 179

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA 156
           ++    + K    +  GCG GY  + +           G++  +  + +A EL   LP  
Sbjct: 14  VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD 73

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
               FL+ D       + +D+   + F   +         QK+   +K  G++I  
Sbjct: 74  --SEFLEGDATEIELNDKYDIAICHAFLLHM-TTPETM-LQKMIHSVKKGGKIICF 125

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 106 ALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFL 162
             P+G + L  GCG G     ++     V+G ++  I I  A++     P A++V     
Sbjct: 43  MAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQ---DFPEARWVVGDLS 99

Query: 163 KADFFTWCPTELFDLIFD-YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG 221
                       FDLI         +  + R      I   L  DG  +           
Sbjct: 100 VDQI----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF-------- 147

Query: 222 GPPYKVSVSDYEEVLQPMGF 241
           G        D+ EV + +G 
Sbjct: 148 GAGRGWVFGDFLEVAERVGL 167

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 21/138 (15%)

Query: 100 HLHQSGALPKGRALVP----------GCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148
            L  +   P  RA++P          GCG G+           YV+GL++S+  + +A  
Sbjct: 25  GLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARA 84

Query: 149 LSSSLPNAKFVSFLKADFFT-WCPTELFDLIF-DYTFFCAIEPEMRAAWAQKIKDFLKPD 206
                     +++ +AD      P + FDL +         +        + +   L P 
Sbjct: 85  AGPDTG----ITYERADLDKLHLPQDSFDLAYSSLALHYVEDVA---RLFRTVHQALSPG 137

Query: 207 GELI-TLMFPISDHVGGP 223
           G  + +   PI      P
Sbjct: 138 GHFVFSTEHPIYMAPARP 155

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 27/154 (17%), Positives = 40/154 (25%), Gaps = 31/154 (20%)

Query: 116 GCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT 172
           GCG G  +V      R+   V G+ +S          +  L     V     +       
Sbjct: 125 GCGRGGSMVMAH--RRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM------ 176

Query: 173 ELFDLIFDYTFFCAI------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP--- 223
              D  FD     A                 +   FLK  G  +T+    +   G P   
Sbjct: 177 --LDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKW 234

Query: 224 ---------PYKVSVSDYEEVLQPMGFQAISIVD 248
                        S  +Y   +        +IVD
Sbjct: 235 VSQINAHFECNIHSRREYLRAMADNRLVPHTIVD 268

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 24/114 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADF 166
                L  GCG G   +A+A   +     +I+  AIK A+E +  +  +   +  + +D 
Sbjct: 52  KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 167 FTWCPTELFDLI-----------FDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
           +       ++ I             +                  K+ LK +GE+
Sbjct: 112 YENVKDRKYNKIITNPPIRAGKEVLHRII-------EEG-----KELLKDNGEI 153

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 14/158 (8%)

Query: 94  PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELS 150
           P+     + +     +   +  GCG G   + MA    P   ++G ++S   IK AE + 
Sbjct: 22  PSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIK 81

Query: 151 SSLPNA-KFVSFLKADF-------FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
              P+  K VSF  +               +  D+I         + E    + +     
Sbjct: 82  EGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE---KFQRSAYAN 138

Query: 203 LKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240
           L+ DG +    +        P +   + +     Q +G
Sbjct: 139 LRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLG 176

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 7/164 (4%)

Query: 88  PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIK 144
           P+     A I+  + Q    P  + L  G  +G  V  ++    P+  V  +E S  + +
Sbjct: 57  PFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR 116

Query: 145 KAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204
               L+    N   +  +  D        +   + D  F    +P+     A     FL+
Sbjct: 117 DLINLAKKRTN---IIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLR 173

Query: 205 PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
             G  +  +            +   +   + +Q    +    + 
Sbjct: 174 NGGHFVISIKANCIDSTASA-EAVFASEVKKMQQENMKPQEQLT 216

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175
           GC +G    A+      V G+E    A ++A+E    L +         D       E F
Sbjct: 40  GCSSGALGAAIKENGTRVSGIEAFPEAAEQAKE---KLDHVVLGDIETMDMPY--EEEQF 94

Query: 176 DLIFDYTFFCAIE----PEMRAAWAQKIKDFLKPDGELI 210
           D +    F   +E    P    A  +K+K ++K +G ++
Sbjct: 95  DCV---IFGDVLEHLFDPW---AVIEKVKPYIKQNGVIL 127

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKF-----VSFLKADFFT 168
           G GTG   +A+AS  P+  ++ ++    A+  A+       NA+      +  L++D+F+
Sbjct: 117 GTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR------NAQHLAIKNIHILQSDWFS 170

Query: 169 WCPTELFDLI 178
               + F +I
Sbjct: 171 ALAGQQFAMI 180

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 10/124 (8%)

Query: 93  QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEEL 149
            P    + +  +G  P    +  G G+G   + +A+   PE  VV  EI +   K A E 
Sbjct: 78  HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137

Query: 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                    V+    D +     E  D +          P+            LKP G  
Sbjct: 138 IKWAGFDDRVTIKLKDIYEGIEEENVDHVI------LDLPQPERVVEH-AAKALKPGGFF 190

Query: 210 ITLM 213
           +   
Sbjct: 191 VAYT 194

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLE 137
           W      G            I+           R L  GCG G+ + A+A      VG++
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAI--LGRQPERVLDLGCGEGWLLRALADRGIEAVGVD 81

Query: 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
                +  A    +   +    S+ +         + +DLI       A+  +       
Sbjct: 82  GDRTLVDAARAAGAGEVHL--ASYAQLAEAKVPVGKDYDLIC---ANFALLHQDIIELLS 136

Query: 198 KIKDFLKPDGELI 210
            ++  L P G L+
Sbjct: 137 AMRTLLVPGGALV 149

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 23/175 (13%), Positives = 50/175 (28%), Gaps = 37/175 (21%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD- 165
            KG+ +    G G   + +++  +  +VG+EI +     A+   +       +  ++ D 
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108

Query: 166 --FFTWCPTELFDLI------FDYTFFCAIEPEMRAA------------WAQKIKDFLKP 205
                  P E  D++      F                             +     LK 
Sbjct: 109 KKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ 168

Query: 206 DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
            G+    +               + D  ++++    +   I      + PR  RE
Sbjct: 169 GGKA-NFVHRPE----------RLLDIIDIMRKYRLEPKRIQF----VHPRSDRE 208

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 10/122 (8%)

Query: 97  IIVHLHQSGALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS----DIAIKKAEELS 150
           ++  L QS A    R +  GCG G  +  +   S    + G+++S    +IA ++ + L 
Sbjct: 21  VVAALKQSNA---RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77

Query: 151 SSLPNAKFVSFLKADF-FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
                 + +  ++    +       +D          ++     A+ + + +F +P   +
Sbjct: 78  LPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVI 137

Query: 210 IT 211
           +T
Sbjct: 138 VT 139

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 6/123 (4%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150
           I  P        +     + R L  G G+G  +  ++     V   E  +   K A++  
Sbjct: 74  IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL 133

Query: 151 SSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
                 K V F   DF      E     F   F    EP     + +K+   L     + 
Sbjct: 134 KKFNLGKNVKFFNVDFKDAEVPEGI---FHAAFVDVREPW---HYLEKVHKSLMEGAPVG 187

Query: 211 TLM 213
            L+
Sbjct: 188 FLL 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.95
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.92
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.91
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.88
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.87
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.86
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.84
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.84
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.84
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.84
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.84
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.83
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.83
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.83
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.83
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.83
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.83
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.83
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.83
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.83
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.82
3ocj_A	305	Putative exported protein; structural genomics, PS	99.82
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.82
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.82
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.82
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.82
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.82
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.81
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.81
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.81
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.81
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.81
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.81
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.81
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.8
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.8
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.8
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.8
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.8
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.8
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.79
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.79
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.79
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.78
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.78
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.78
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.78
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.78
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.78
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.77
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.77
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.77
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.77
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.77
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.77
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.77
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.76
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.76
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.76
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.75
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.75
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.75
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.75
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.75
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.75
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.75
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.75
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.74
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.74
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.74
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.74
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.74
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.74
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.74
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.73
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.73
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.73
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.73
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.72
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.72
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.72
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.72
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.72
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.71
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.71
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.71
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.71
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.7
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.7
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.7
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.69
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.69
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.68
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.68
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.68
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.68
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.68
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.67
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.67
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.67
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.67
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.67
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.67
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.67
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.66
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.66
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.66
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.65
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.65
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.65
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.65
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.64
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.64
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.64
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.64
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.63
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.63
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.63
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.61
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.61
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.6
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.6
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.6
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.6
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.6
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.59
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.59
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.59
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.58
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.58
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.58
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.58
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.57
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.57
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.57
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.56
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.56
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.56
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.56
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.56
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.56
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.55
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.55
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.55
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.54
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.54
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.53
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.53
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.53
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.52
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.52
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.52
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.51
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.51
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.51
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.5
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.5
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.5
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.5
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.49
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.49
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.49
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.49
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.49
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.49
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.48
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.48
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.47
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.47
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.46
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.46
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.46
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.46
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.46
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.45
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.45
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.45
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.45
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.45
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.45
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.44
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.44
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.44
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.44
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.43
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.43
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.43
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.43
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.42
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.42
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.42
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.42
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.42
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.41
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.41
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.4
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.4
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.4
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.4
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.39
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.39
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.39
2o07_A	304	Spermidine synthase; structural genomics, structur	99.38
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.38
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.35
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.34
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.33
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.32
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.31
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.3
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.28
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.27
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.27
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.24
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.23
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.22
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.2
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.19
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.19
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.19
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.16
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.1
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.09
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.08
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.08
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.07
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.07
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.05
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.03
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.02
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.02
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.0
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.0
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.99
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.98
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.96
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
3khk_A	544	Type I restriction-modification system methylation	98.93
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.89
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.87
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.87
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.85
3lkd_A	542	Type I restriction-modification system methyltrans	98.81
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.8
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.78
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.73
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.72
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.7
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.64
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.62
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.46
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.44
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.44
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.38
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.37
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.34
3ufb_A	530	Type I restriction-modification system methyltran	98.26
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.22
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	98.22
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.12
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.09
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.09
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.03
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.86
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.75
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.75
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.75
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.68
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.49
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.48
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.47
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.28
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.23
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.17
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.13
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.08
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.0
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.99
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.9
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.9
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.61
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.61
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.57
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.22
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.09
3me5_A	482	Cytosine-specific methyltransferase; structural ge	96.06
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.79
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.64
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.63
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.4
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.36
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.28
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.25
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.2
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.18
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.08
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.97
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.95
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.95
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.92
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.87
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	94.79
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.76
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.68
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.65
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.55
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	94.42
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	94.38
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.16
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	94.1
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.88
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.87
3gms_A	340	Putative NADPH:quinone reductase; structural genom	93.83
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	93.61
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.6
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.59
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.56
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.53
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.48
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.39
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.03
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.02
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	92.93
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.93
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.91
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.9
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.73
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.59
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	92.56
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.54
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.52
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	92.39
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.29
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.27
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.21
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.21
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.17
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.14
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	92.05
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	92.01
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	92.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.92
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.9
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.89
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.84
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.8
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	91.66
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.62
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	91.54
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	91.53
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.5
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.48
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.45
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	91.32
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.23
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	91.06
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.01
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	90.9
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	90.85
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.51
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.51
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.5
1lnq_A	336	MTHK channels, potassium channel related protein;	90.36
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.29
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	90.23
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	90.23
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.19
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	90.12
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	89.93
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.89
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	89.78
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.51
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	89.45
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.3
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	89.3
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	89.3
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.26
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.24
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	89.23
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.17
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.1
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	89.07
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.77
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	88.72
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	88.57
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	88.38
3imf_A	257	Short chain dehydrogenase; structural genomics, in	87.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.67
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	87.65
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	86.95
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	86.84
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	86.78
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.74
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.72
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	86.6
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	86.49
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	86.32
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	86.19
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	85.9
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	85.87
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	85.53
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	85.43
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	85.27
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.99
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	84.59
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.56
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	84.39
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	84.37
1xkq_A	280	Short-chain reductase family member (5D234); parra	84.26
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	84.12
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	84.11
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	83.98
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	83.74
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	83.57
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	83.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	83.29
1xhl_A	297	Short-chain dehydrogenase/reductase family member	83.26
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	83.21
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.19
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	83.17
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	83.07
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	82.95
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	82.6
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	82.59
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	82.58
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	82.55
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	82.1
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	82.01
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	81.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	81.88
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	81.86
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	81.81
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	81.6
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	81.27
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	81.25
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	81.24
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	81.19
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	81.11
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	81.11
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	81.08
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	81.06
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	80.59
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	80.26
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	80.2
1ej6_A	1289	Lambda2; icosahedral, non-equivalence, dsRNA virus	80.18

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.95  E-value=1.2e-27  Score=197.09  Aligned_cols=193  Identities=68%  Similarity=1.261  Sum_probs=172.9

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      ..+|++.|.....+|......+.+..++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+
T Consensus        33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~  112 (235)
T 3lcc_A           33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSP  112 (235)
T ss_dssp             HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSG
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccC
Confidence            47899999998889988888888899888776667799999999999999999999999999999999999999987755


Q ss_pred             CCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021          155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       155 ~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      ...+++++.+|+.+..+.++||+|++..++++++++....+++.+.++|+|||.+++..+.......++++.++.+++.+
T Consensus       113 ~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~  192 (235)
T 3lcc_A          113 KAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE  192 (235)
T ss_dssp             GGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHH
T ss_pred             CCcceEEEECchhcCCCCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHH
Confidence            55679999999999777779999999999999987788899999999999999999999988777778888899999999


Q ss_pred             HHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024021          235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      +++.+||+++.+...........+.|.+.+++.
T Consensus       193 ~l~~~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~  225 (235)
T 3lcc_A          193 VLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKK  225 (235)
T ss_dssp             HHGGGTEEEEEEEECTTCCTTTTTSCEEEEEEE
T ss_pred             HHHHcCCeEEEEEecCCccccccCHHHHhhhhh
Confidence            999999999999999999888888877765543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.92  E-value=6.3e-24  Score=176.50  Aligned_cols=175  Identities=18%  Similarity=0.303  Sum_probs=141.9

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      ..+|+..|..+..+|....+.+.+..++...  ..++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|+++...
T Consensus        33 ~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~  112 (252)
T 2gb4_A           33 LEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL  112 (252)
T ss_dssp             HHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc
Confidence            4689999998888898888888887777542  23568999999999999999999999999999999999999877531


Q ss_pred             ----------C------CCCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          153 ----------L------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       153 ----------~------~~~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                                .      ....+++++++|+.+..+.  ++||+|++..++++++++....+++++.++|+|||++++.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~  192 (252)
T 2gb4_A          113 SYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL  192 (252)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence                      0      0125799999999985443  789999999999999887788999999999999999875443


Q ss_pred             cC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          215 PI-SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       215 ~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .. .....++++.++.+++.++++. +|+++......
T Consensus       193 ~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~~  228 (252)
T 2gb4_A          193 SYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEVD  228 (252)
T ss_dssp             ECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEEE
T ss_pred             ecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEeccc
Confidence            22 2223467777899999999998 59998877543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.91  E-value=8.1e-24  Score=170.47  Aligned_cols=163  Identities=18%  Similarity=0.295  Sum_probs=131.2

Q ss_pred             CccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC-----------C
Q 024021           88 PWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP-----------N  155 (274)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----------~  155 (274)
                      +|+...+.+.+.+++..... ++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++.....           .
T Consensus         1 ~w~~~~~~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~   80 (203)
T 1pjz_A            1 GSHQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA   80 (203)
T ss_dssp             --CCSSSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEE
T ss_pred             CCCcccCCHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCccccccccccccc
Confidence            58888889999888876543 56899999999999999999989999999999999999998864310           1


Q ss_pred             CcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCcccCHHHH
Q 024021          156 AKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSVSDY  232 (274)
Q Consensus       156 ~~~~~~~~~d~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~-~~~~~~~~~~~~~~~~  232 (274)
                      ..+++++++|+.+....  ++||+|++..++++++++....+++++.++|+|||++++..... .....++++.++.+++
T Consensus        81 ~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el  160 (203)
T 1pjz_A           81 APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWL  160 (203)
T ss_dssp             CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHH
T ss_pred             CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHH
Confidence            25799999999985543  68999999999999988778889999999999999844433322 1223466777899999


Q ss_pred             HHHHhcCCCcEEEEeeccc
Q 024021          233 EEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .++++. ||+++.+.....
T Consensus       161 ~~~~~~-gf~i~~~~~~~~  178 (203)
T 1pjz_A          161 HRVMSG-NWEVTKVGGQDT  178 (203)
T ss_dssp             HHTSCS-SEEEEEEEESSC
T ss_pred             HHHhcC-CcEEEEeccccc
Confidence            999999 999988877554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.88  E-value=4.5e-22  Score=166.15  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=122.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      +..++.....++.+|||+|||+|..+..+++    ++++|+|+|+|+.|++.|++++...+...+++++++|+.+... +
T Consensus        60 i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~  138 (261)
T 4gek_A           60 IGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-E  138 (261)
T ss_dssp             HHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-C
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-c
Confidence            3344444456778999999999999988875    4779999999999999999999887777789999999987543 5


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCC---------------
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGG---------------  222 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------~~~---------------  222 (274)
                      +||+|+++.++++++++.+..++++++++|+|||.+++.+......                ..|               
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~  218 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLEN  218 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcc
Confidence            6999999999999998888899999999999999999977544321                000               


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .....+.+++.++|+++||+.+++....
T Consensus       219 ~~~~~s~~~~~~~L~~AGF~~ve~~fq~  246 (261)
T 4gek_A          219 VMLTDSVETHKARLHKAGFEHSELWFQC  246 (261)
T ss_dssp             HCCCBCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             cccCCCHHHHHHHHHHcCCCeEEEEEEe
Confidence            0123478899999999999998876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.87  E-value=1.9e-21  Score=156.11  Aligned_cols=186  Identities=15%  Similarity=0.223  Sum_probs=141.8

Q ss_pred             chhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024021           77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  156 (274)
                      +|++.|......|. ..+...+..++.... ++ +|||+|||+|..+..+++.+.+++++|+++.+++.|+++....+. 
T Consensus         1 ~W~~~y~~~~~~~~-~~~~~~l~~~~~~~~-~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-   76 (202)
T 2kw5_A            1 MWDERFSQSEYVYG-TEPNDFLVSVANQIP-QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-   76 (202)
T ss_dssp             CCCCCCCCCCCCCC-CCCCSSHHHHHHHSC-SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-
T ss_pred             Chhhhhcccchhhc-cCchHHHHHHHHhCC-CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-
Confidence            57777776555554 345556666666433 34 999999999999999999889999999999999999999866543 


Q ss_pred             cceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---CC---CCcccCH
Q 024021          157 KFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---GG---PPYKVSV  229 (274)
Q Consensus       157 ~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---~~---~~~~~~~  229 (274)
                       ++.++.+|+.+. .+.++||+|++.  +.+++.+....+++.+.++|+|||.+++..+......   .+   ..+.++.
T Consensus        77 -~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (202)
T 2kw5_A           77 -KITTVQSNLADFDIVADAWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKL  153 (202)
T ss_dssp             -CEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCH
T ss_pred             -ceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCH
Confidence             699999999884 355789999985  3455667788999999999999999999887654331   11   1345799


Q ss_pred             HHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhhcc
Q 024021          230 SDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRH  271 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (274)
                      +++.++++  ||+++.+.....+.........+..|.+..+.
T Consensus       154 ~~l~~~l~--Gf~v~~~~~~~~~~~~g~~~~~~~~~i~~~~~  193 (202)
T 2kw5_A          154 ETLQSELP--SLNWLIANNLERNLDEGAYHQGKAALIQLLGQ  193 (202)
T ss_dssp             HHHHHHCS--SSCEEEEEEEEEECSCSSSSCCEEEEEEEEEC
T ss_pred             HHHHHHhc--CceEEEEEEEEeecCCCCCcccHHHHHHHHHH
Confidence            99999999  99999998877765443334455666665544

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=1.3e-20  Score=151.36  Aligned_cols=148  Identities=17%  Similarity=0.162  Sum_probs=122.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE  173 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~  173 (274)
                      ...+..++...   +.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.      .+++++.+|+.+ ..+.+
T Consensus        31 ~~~l~~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  101 (203)
T 3h2b_A           31 RVLIEPWATGV---DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPK  101 (203)
T ss_dssp             HHHHHHHHHHC---CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCC
T ss_pred             HHHHHHHhccC---CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCC
Confidence            44555655532   789999999999999999998889999999999999999884      468999999988 34568


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +||+|++..++++++.+....+++++.++|+|||.+++..+.....     .......++.+++.++++++||+++.+..
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            8999999999999986677899999999999999999988655431     11122346899999999999999999987


Q ss_pred             ccc
Q 024021          249 NKL  251 (274)
Q Consensus       249 ~~~  251 (274)
                      ...
T Consensus       182 ~~~  184 (203)
T 3h2b_A          182 DPR  184 (203)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.84  E-value=5.4e-20  Score=155.53  Aligned_cols=152  Identities=17%  Similarity=0.196  Sum_probs=124.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCe
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~  175 (274)
                      +..++.....++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++....+..++++++.+|+.+..  ++++|
T Consensus        58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            4455555555568999999999999999998899999999999999999999988877678999999998843  67899


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----------------------CCCCCCcccCHHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD-----------------------HVGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  232 (274)
                      |+|++..+++++++.  ..+++++.++|+|||.+++..+....                       ........++.+++
T Consensus       138 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  215 (285)
T 4htf_A          138 DLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV  215 (285)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred             eEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence            999999999999643  67999999999999999997753211                       01122344689999


Q ss_pred             HHHHhcCCCcEEEEeeccc
Q 024021          233 EEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .++++++||+++.+.....
T Consensus       216 ~~~l~~aGf~v~~~~~~~~  234 (285)
T 4htf_A          216 YLWLEEAGWQIMGKTGVRV  234 (285)
T ss_dssp             HHHHHHTTCEEEEEEEESS
T ss_pred             HHHHHHCCCceeeeeeEEE
Confidence            9999999999998877544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.84  E-value=7.8e-20  Score=150.00  Aligned_cols=146  Identities=16%  Similarity=0.179  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++....+   +++++.+|+.+....++||+|++..++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~fD~v~~~~~l  119 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEEKYDMVVSALSI  119 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCCCceEEEEeCcc
Confidence            45689999999999999999884  7899999999999999999987653   799999999986555899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------------------CCCCCcccCHHHHHH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~  234 (274)
                      ++++++....+++++.++|+|||.+++.+......                              ..+....++.+++.+
T Consensus       120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (234)
T 3dtn_A          120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLN  199 (234)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHH
Confidence            99987777789999999999999999987543221                              012223457899999


Q ss_pred             HHhcCCCcEEEEeecccccCC
Q 024021          235 VLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~~~~~~~~  255 (274)
                      +++++||+.+++......+..
T Consensus       200 ll~~aGF~~v~~~~~~~~~~~  220 (234)
T 3dtn_A          200 WLKEAGFRDVSCIYKYYQFAV  220 (234)
T ss_dssp             HHHHTTCEEEEEEEEETTEEE
T ss_pred             HHHHcCCCceeeeeeecceeE
Confidence            999999999998776655543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.84  E-value=1.3e-19  Score=154.58  Aligned_cols=165  Identities=15%  Similarity=0.162  Sum_probs=131.3

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+.  +++|
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~f  138 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPV  138 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCc
Confidence            344555443 35579999999999999999885 7899999999999999999998887777899999999876  6889


Q ss_pred             eEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----C-------------------CCC
Q 024021          176 DLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----G-------------------GPP  224 (274)
Q Consensus       176 D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~-------------------~~~  224 (274)
                      |+|++..++++++       .+....+++++.++|+|||++++..+......     .                   ...
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  218 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  218 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence            9999999999993       35678899999999999999999887554221     0                   001


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024021          225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV  269 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (274)
                      ...+.+++.++++++||+++.+......+     ..++..|.+.+
T Consensus       219 ~~~s~~~~~~~l~~aGf~~~~~~~~~~~y-----~~tl~~w~~~~  258 (302)
T 3hem_A          219 RLPRISQVDYYSSNAGWKVERYHRIGANY-----VPTLNAWADAL  258 (302)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGGGH-----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCcEEEEEEeCchhH-----HHHHHHHHHHH
Confidence            33578999999999999999987755433     35566665543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.84  E-value=2.9e-20  Score=158.33  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=126.9

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~  172 (274)
                      ......++.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....+..  .+++++.+|+.+....
T Consensus        69 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~  148 (299)
T 3g2m_A           69 TSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD  148 (299)
T ss_dssp             HHHHHHHHHHHCCCCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS
T ss_pred             cHHHHHHHHhhCCCCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC
Confidence            44455555554555569999999999999999999999999999999999999998765421  4699999999986667


Q ss_pred             CCeeEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------------------------
Q 024021          173 ELFDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------------------------  220 (274)
Q Consensus       173 ~~~D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------------------------  220 (274)
                      ++||+|++. .++++++++....+++++.++|+|||.+++..+......                               
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  228 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQ  228 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEE
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEE
Confidence            899998865 677888877788999999999999999999776543110                               


Q ss_pred             ----------CCC-------CcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          221 ----------GGP-------PYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       221 ----------~~~-------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                                .+.       ...++.+++.++++++||+++.+.....+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g  278 (299)
T 3g2m_A          229 EITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGG  278 (299)
T ss_dssp             EEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTS
T ss_pred             EEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCC
Confidence                      000       012589999999999999999998876544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.84  E-value=4.2e-20  Score=149.28  Aligned_cols=149  Identities=14%  Similarity=0.077  Sum_probs=123.3

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      ...+..++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.       ++.+..+|+....+.++
T Consensus        31 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~  102 (211)
T 3e23_A           31 SATLTKFLGEL-PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDA  102 (211)
T ss_dssp             CHHHHHHHTTS-CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSC
T ss_pred             hHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCc
Confidence            55566666643 35689999999999999999998899999999999999999986       36778899888667789


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----CCCCcccCHHHHHHHHhcCC-CcEEEEeec
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----GGPPYKVSVSDYEEVLQPMG-FQAISIVDN  249 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~  249 (274)
                      ||+|++..++++++.+....+++++.++|+|||++++.........    ......++.+++.++++++| |+++.+...
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            9999999999999877888999999999999999999875543221    11122358999999999999 999998775


Q ss_pred             cc
Q 024021          250 KL  251 (274)
Q Consensus       250 ~~  251 (274)
                      ..
T Consensus       183 ~~  184 (211)
T 3e23_A          183 EG  184 (211)
T ss_dssp             EE
T ss_pred             cC
Confidence            54

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.84  E-value=3.7e-20  Score=152.88  Aligned_cols=136  Identities=17%  Similarity=0.144  Sum_probs=114.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...     +++++.+|+.+..++++||+|++..+++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            4567999999999999999999888999999999999999998743     59999999988766788999999999999


Q ss_pred             cChhHHHHHHHHHH-hcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024021          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      +++.  ..+++++. ++|+|||++++........                      ..+....++.+++.++++++||++
T Consensus       116 ~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  193 (250)
T 2p7i_A          116 IDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  193 (250)
T ss_dssp             CSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             hcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeE
Confidence            9644  68999999 9999999999988554310                      011123468999999999999999


Q ss_pred             EEEeec
Q 024021          244 ISIVDN  249 (274)
Q Consensus       244 ~~~~~~  249 (274)
                      +.....
T Consensus       194 ~~~~~~  199 (250)
T 2p7i_A          194 TYRSGI  199 (250)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            988753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.83  E-value=8.2e-20  Score=152.46  Aligned_cols=155  Identities=21%  Similarity=0.265  Sum_probs=125.9

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCC
Q 024021           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~  171 (274)
                      ......++..... ++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.+ +.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~  117 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP  117 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC
Confidence            4445566665543 4579999999999999999885 889999999999999999988655   579999999988 445


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-C----------CCcccCHHHHHHHHhcCC
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-G----------PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~l~~~G  240 (274)
                      .++||+|++..++++++++....+++++.++|+|||.+++.++....... .          .....+.+++.++++++|
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  197 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN  197 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC
Confidence            68999999999999998778889999999999999999998865443100 0          112348999999999999


Q ss_pred             CcEEEEeecccc
Q 024021          241 FQAISIVDNKLA  252 (274)
Q Consensus       241 f~~~~~~~~~~~  252 (274)
                      |+++.+......
T Consensus       198 f~~~~~~~~~~~  209 (266)
T 3ujc_A          198 FKNVVSKDLSDY  209 (266)
T ss_dssp             CEEEEEEECHHH
T ss_pred             CeEEEEEeCCHH
Confidence            999998875543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.83  E-value=6.3e-20  Score=149.10  Aligned_cols=139  Identities=21%  Similarity=0.225  Sum_probs=115.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++..     .+++++.+|+.+....++||+|++..++++
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTYAFHH  118 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEESCGGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECcchhc
Confidence            356899999999999999999888999999999999999999875     368999999998544489999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CCC---------CCcccCHHHHHHHHhcCCCcEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VGG---------PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +++.....+++++.++|+|||.+++.+......           ..+         ..+..+.+++.++++++||+++..
T Consensus       119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~  198 (220)
T 3hnr_A          119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT  198 (220)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence            987766679999999999999999987443221           001         113347899999999999998887


Q ss_pred             eecc
Q 024021          247 VDNK  250 (274)
Q Consensus       247 ~~~~  250 (274)
                      ....
T Consensus       199 ~~~~  202 (220)
T 3hnr_A          199 RLNH  202 (220)
T ss_dssp             ECSS
T ss_pred             eccc
Confidence            6643

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.83  E-value=2.3e-19  Score=152.50  Aligned_cols=142  Identities=17%  Similarity=0.186  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....+..++++++.+|+.+ +.++++||+|++..++
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  160 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  160 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchh
Confidence            45679999999999999999885 789999999999999999998777666789999999988 4456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +|+++  ...+++++.++|+|||++++.+........           ..+...+.+++.++++++||+++.+....
T Consensus       161 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          161 LHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             hhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence            99965  578999999999999999998765432211           11223488999999999999999987754

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.83  E-value=2e-19  Score=143.69  Aligned_cols=164  Identities=13%  Similarity=0.201  Sum_probs=128.3

Q ss_pred             cccchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ...+|...|...       .....+...+.  ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....
T Consensus         7 ~~~~~~~~~~~~-------~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~   77 (199)
T 2xvm_A            7 DENYFTDKYELT-------RTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE   77 (199)
T ss_dssp             CTTHHHHHHTCC-------CCCHHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             chHHHhhhhccc-------cccHHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC
Confidence            346677777542       22444555554  345679999999999999999988889999999999999999988665


Q ss_pred             CCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHH
Q 024021          154 PNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVS  230 (274)
Q Consensus       154 ~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~--~~~~~~~~~  230 (274)
                      +. .+++++.+|+.+....++||+|++..++++++++....+++.+.++|+|||.+++........ ..  ...+.++.+
T Consensus        78 ~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~  156 (199)
T 2xvm_A           78 NL-DNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG  156 (199)
T ss_dssp             TC-TTEEEEECCGGGCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTT
T ss_pred             CC-CCcEEEEcchhhCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHH
Confidence            44 359999999988544778999999999999987778899999999999999987765433222 11  123456899


Q ss_pred             HHHHHHhcCCCcEEEEeec
Q 024021          231 DYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++.++++.  |+++.....
T Consensus       157 ~l~~~~~~--f~~~~~~~~  173 (199)
T 2xvm_A          157 ELRRYYEG--WERVKYNED  173 (199)
T ss_dssp             HHHHHTTT--SEEEEEECC
T ss_pred             HHHHHhcC--CeEEEeccc
Confidence            99999987  999888664

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.83  E-value=1.2e-19  Score=153.02  Aligned_cols=163  Identities=20%  Similarity=0.251  Sum_probs=126.9

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      .+...+.  ..++.+|||+|||+|.++..+++++.+|+|+|+++.+++.++++.      +++++..+|+.+...+++||
T Consensus        48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD  119 (279)
T 3ccf_A           48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLD  119 (279)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEE
T ss_pred             HHHHHhC--CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcC
Confidence            3444443  345689999999999999999998899999999999999999886      46889999998855567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCCCCcccCHHHHHHHH
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l  236 (274)
                      +|++..+++++++  ...++.++.++|+|||++++........                    ...+....+.+++.+++
T Consensus       120 ~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (279)
T 3ccf_A          120 AVFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL  197 (279)
T ss_dssp             EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred             EEEEcchhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence            9999999999864  3578999999999999999877654321                    01112345899999999


Q ss_pred             hcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024021          237 QPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV  269 (274)
Q Consensus       237 ~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (274)
                      +++||+++.+.....+.....+.+.+..|.+..
T Consensus       198 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~~l~~~  230 (279)
T 3ccf_A          198 EKQGFDVTYAALFNRPTTLAEGEFGMANWIQMF  230 (279)
T ss_dssp             HHHTEEEEEEEEEECCEECSSGGGHHHHHHHHH
T ss_pred             HHcCCEEEEEEEecccccccCCHHHHHHHHHHh
Confidence            999999998877665554432455666666543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.83  E-value=4.2e-20  Score=151.31  Aligned_cols=174  Identities=21%  Similarity=0.221  Sum_probs=123.7

Q ss_pred             ccchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      ..+|+..|.......  ......+...    ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+
T Consensus         3 ~~yw~~~~~~~~~~~--~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~   76 (235)
T 3sm3_A            3 ESYWEKVSGKNIPSS--LDLYPIIHNY----LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPG   76 (235)
T ss_dssp             -----------------CCCCTTHHHH----CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCS
T ss_pred             hhHHHHHhhccCCCH--HHHHHHHHHh----CCCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcC
Confidence            356777665432211  1112223333    2356899999999999999999888999999999999999999987765


Q ss_pred             C----CcceEEEEcccCC-CCCCCCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCC--------
Q 024021          155 N----AKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHV--------  220 (274)
Q Consensus       155 ~----~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~--------  220 (274)
                      .    ..++++..+|+.. ..+.++||+|++..+++++++ .....+++++.++|+|||.+++.++......        
T Consensus        77 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~  156 (235)
T 3sm3_A           77 LNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYL  156 (235)
T ss_dssp             CCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHH
T ss_pred             CccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhh
Confidence            4    2368999999988 445678999999999999964 4566899999999999999999876442110        


Q ss_pred             ------------------CC----CCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          221 ------------------GG----PPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       221 ------------------~~----~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                                        .+    ....++.+++.++++++||+++.+........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~  212 (235)
T 3sm3_A          157 HDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKELETR  212 (235)
T ss_dssp             HHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEEEECT
T ss_pred             hhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecceeec
Confidence                              00    01246899999999999999999987554443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.83  E-value=2.4e-19  Score=145.24  Aligned_cols=148  Identities=18%  Similarity=0.246  Sum_probs=117.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      .+...+.. ..++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++.    + ..+++++.+|+.+..+.++||
T Consensus        36 ~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~----~-~~~~~~~~~d~~~~~~~~~~D  109 (218)
T 3ou2_A           36 AALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH----G-LDNVEFRQQDLFDWTPDRQWD  109 (218)
T ss_dssp             HHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG----C-CTTEEEEECCTTSCCCSSCEE
T ss_pred             HHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhc----C-CCCeEEEecccccCCCCCcee
Confidence            34444432 23457999999999999999988888999999999999999881    1 146999999999887778999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CCC-----CcccCHHHHH
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GGP-----PYKVSVSDYE  233 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------------------~~~-----~~~~~~~~~~  233 (274)
                      +|++..++++++++....+++++.++|+|||.+++.++......                  .+.     ...++.+++.
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELT  189 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHH
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHH
Confidence            99999999999887778999999999999999999876543210                  011     1134889999


Q ss_pred             HHHhcCCCcEEEEeecc
Q 024021          234 EVLQPMGFQAISIVDNK  250 (274)
Q Consensus       234 ~~l~~~Gf~~~~~~~~~  250 (274)
                      ++++++||++.......
T Consensus       190 ~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          190 ERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             HHHHHTTEEEEEEEEET
T ss_pred             HHHHHCCCEEEeeeccc
Confidence            99999999966655433

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.83  E-value=1.5e-19  Score=154.82  Aligned_cols=141  Identities=16%  Similarity=0.135  Sum_probs=119.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....++.++++++.+|+.+. .+.++||+|++..++
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            34579999999999999999886 8899999999999999999998888777899999999884 456899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG------------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++++   ...+++++.++|+|||++++.+.........            .+...+.+++.++++++||+++.+....
T Consensus       196 ~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          196 MYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             GGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred             hhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence            9995   5789999999999999999987655432110            0123478999999999999999988755

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.83  E-value=1.3e-19  Score=153.29  Aligned_cols=152  Identities=20%  Similarity=0.166  Sum_probs=122.2

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++ .+.+|+|+|+++.+++.++++....+..+++++..+|+.+..  ++|
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~f  130 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPV  130 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCC
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCe
Confidence            334444443 3457999999999999999884 577999999999999999999988777678999999997644  789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----C--------------------CCcccCHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----G--------------------PPYKVSVSD  231 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----~--------------------~~~~~~~~~  231 (274)
                      |+|++..+++|++++....+++++.++|+|||.+++.++.......    +                    .....+.++
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  210 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  210 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence            9999999999997666788999999999999999997765432100    0                    011248999


Q ss_pred             HHHHHhcCCCcEEEEeeccc
Q 024021          232 YEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +.++++++||+++.+.....
T Consensus       211 ~~~~l~~aGf~~~~~~~~~~  230 (287)
T 1kpg_A          211 VQECASANGFTVTRVQSLQP  230 (287)
T ss_dssp             HHHHHHTTTCEEEEEEECHH
T ss_pred             HHHHHHhCCcEEEEEEeCcH
Confidence            99999999999999876543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.82  E-value=8.6e-19  Score=146.74  Aligned_cols=153  Identities=15%  Similarity=0.098  Sum_probs=122.4

Q ss_pred             cHHHHHHHhcCC--CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C
Q 024021           95 APIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C  170 (274)
Q Consensus        95 ~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~  170 (274)
                      .......+....  .++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+..++++++.+|+.+. .
T Consensus        31 ~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  110 (267)
T 3kkz_A           31 PEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF  110 (267)
T ss_dssp             HHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC
Confidence            344455555543  45689999999999999999885 4499999999999999999998888777899999999884 4


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------CCCcccCHHHHHHHHhcCC
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------GPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~G  240 (274)
                      +.++||+|++..++++++   ...+++.+.++|+|||++++.+........          ..+...+.+++.++++++|
T Consensus       111 ~~~~fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  187 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG  187 (267)
T ss_dssp             CTTCEEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC
Confidence            567899999999999984   357899999999999999998754221100          0122347899999999999


Q ss_pred             CcEEEEeecc
Q 024021          241 FQAISIVDNK  250 (274)
Q Consensus       241 f~~~~~~~~~  250 (274)
                      |+++.+....
T Consensus       188 f~~v~~~~~~  197 (267)
T 3kkz_A          188 YLPVATFILP  197 (267)
T ss_dssp             EEEEEEEECC
T ss_pred             CEEEEEEECC
Confidence            9999887644

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.82  E-value=3.6e-19  Score=152.04  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=118.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--C-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMA--S-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..++  . ++.+|+++|+++.+++.|+++....+..++++++.+|+.+....++||+|+++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            4566899999999999999985  2 577999999999999999999988877778999999999854448999999999


Q ss_pred             cccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------------CCCcccCHHHHH
Q 024021          183 FFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------------GPPYKVSVSDYE  233 (274)
Q Consensus       183 ~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~  233 (274)
                      +++++++ .....+++++.++|+|||++++.++.......                            +.....+.+++.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR  275 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence            9999854 44456899999999999999998765432110                            011225899999


Q ss_pred             HHHhcCCCcEEEEeec
Q 024021          234 EVLQPMGFQAISIVDN  249 (274)
Q Consensus       234 ~~l~~~Gf~~~~~~~~  249 (274)
                      ++++++||+++.+...
T Consensus       276 ~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          276 AQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHTTCEEEEEECC
T ss_pred             HHHHHCCCEEEEEEcc
Confidence            9999999999998763

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.82  E-value=4.5e-19  Score=148.76  Aligned_cols=154  Identities=20%  Similarity=0.240  Sum_probs=123.8

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~  174 (274)
                      ...++.... .++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.++++....+..++++++.+|+.+ +.++++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS  129 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence            334444443 3567999999999999999987 5789999999999999999998887776789999999988 445678


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------CCCcccCHHHHHHHHhcCC
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------GPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~G  240 (274)
                      ||+|++..+++++++.  ..+++++.++|+|||.+++.++.......              ......+.+++.++++++|
T Consensus       130 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  207 (273)
T 3bus_A          130 FDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE  207 (273)
T ss_dssp             EEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred             ccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence            9999999999999643  68899999999999999998765432110              1223468899999999999


Q ss_pred             CcEEEEeeccccc
Q 024021          241 FQAISIVDNKLAI  253 (274)
Q Consensus       241 f~~~~~~~~~~~~  253 (274)
                      |+++.+......+
T Consensus       208 f~~~~~~~~~~~~  220 (273)
T 3bus_A          208 LVVTSTVDISAQA  220 (273)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcHhH
Confidence            9999888765443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.82  E-value=4.6e-19  Score=147.29  Aligned_cols=152  Identities=16%  Similarity=0.135  Sum_probs=120.9

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024021           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  172 (274)
                      ...+..++.... .++.+|||+|||+|..+..+++ .+.+++|+|+++.+++.|+++....+..++++++.+|+.+..+.
T Consensus        22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            444555555543 4557999999999999998887 47799999999999999999998877767899999999885557


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHHHHHhcCCC
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      ++||+|++..+++++++  ...+++++.++|+|||.+++.+.......           .......+.+++.++++++||
T Consensus       102 ~~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  179 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGY  179 (256)
T ss_dssp             SCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTB
T ss_pred             CCCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCC
Confidence            78999999999998853  36789999999999999998764322110           111134588999999999999


Q ss_pred             cEEEEee
Q 024021          242 QAISIVD  248 (274)
Q Consensus       242 ~~~~~~~  248 (274)
                      +++.+..
T Consensus       180 ~~~~~~~  186 (256)
T 1nkv_A          180 DVVEMVL  186 (256)
T ss_dssp             CCCEEEE
T ss_pred             eeEEEEe
Confidence            9887654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.82  E-value=2.3e-19  Score=145.74  Aligned_cols=160  Identities=9%  Similarity=0.156  Sum_probs=120.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCc----ceEEEEcccCCC-CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFTW-CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~-~~~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|+++....++..    +++++.+|+... .+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            456899999999999999999854  699999999999999999987665443    799999999663 3457899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHH----HHHhcCCCcEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYE----EVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~l~~~Gf~~~  244 (274)
                      +..++++++++....+++++.++|+|||.++..........           ....+.++.+++.    ++++++||++.
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~  187 (219)
T 3jwg_A          108 VIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVR  187 (219)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEE
T ss_pred             EHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEE
Confidence            99999999887778999999999999997776654322110           1122346888998    88999999775


Q ss_pred             EEeecccccCCccchhHHHHhhh
Q 024021          245 SIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ... ........+...++.+|.+
T Consensus       188 ~~~-~g~~~~~~g~~~qi~~~~~  209 (219)
T 3jwg_A          188 FLQ-IGEIDDEFGSPTQMGVFTL  209 (219)
T ss_dssp             EEE-ESCCCTTSCCSEEEEEEEE
T ss_pred             EEe-cCCccccCCCCeEEEEEec
Confidence            542 2223333334445555544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.82  E-value=1.9e-19  Score=148.27  Aligned_cols=140  Identities=21%  Similarity=0.308  Sum_probs=115.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    .+++++.+|+.+. .+.++||+|++..++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPFENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSSCTTCEEEEEEESCT
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCCCCCCccEEEEcChH
Confidence            34678999999999999999999899999999999999999987522    5699999999884 456899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +|+++  ...+++.+.++|+|||.+++..+......           ......++.+++.++++++||+++.......
T Consensus       127 ~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  202 (242)
T 3l8d_A          127 EWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYK  202 (242)
T ss_dssp             TSSSC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             hhccC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecccc
Confidence            99853  35789999999999999999886543221           1112236889999999999999999876543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.82  E-value=4.8e-19  Score=147.68  Aligned_cols=143  Identities=16%  Similarity=0.133  Sum_probs=116.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....+. .+++++.+|+.+ +.++++||+|++..+++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            4568999999999999999998778999999999999999999876654 369999999988 44567999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      ++++.  ..++.++.++|+|||++++.+......              .......++.+++.++++++||+++.+.....
T Consensus       115 ~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  192 (260)
T 1vl5_A          115 HFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHK  192 (260)
T ss_dssp             GCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred             hcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence            99643  588999999999999999876543221              01112335789999999999999988877654


Q ss_pred             c
Q 024021          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       193 ~  193 (260)
T 1vl5_A          193 T  193 (260)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.81  E-value=4.3e-20  Score=154.47  Aligned_cols=177  Identities=15%  Similarity=0.106  Sum_probs=123.9

Q ss_pred             cccchhHhhhcCCCCccCC----CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHH
Q 024021           74 SSGGWEKCWEEGLTPWDIG----QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEE  148 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~  148 (274)
                      ...+|+.+|..........    -+...+.+++.....++.+|||+|||+|..+..++..++ +|+|+|+|+.+++.|++
T Consensus        17 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~   96 (263)
T 2a14_A           17 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEK   96 (263)
T ss_dssp             HHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccchhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHH
Confidence            3467888887644321100    011223333332345567999999999988887777776 79999999999999998


Q ss_pred             HhhcCCC----------------------------CcceE-EEEcccCCCC-----CCCCeeEEEecccccccC--hhHH
Q 024021          149 LSSSLPN----------------------------AKFVS-FLKADFFTWC-----PTELFDLIFDYTFFCAIE--PEMR  192 (274)
Q Consensus       149 ~~~~~~~----------------------------~~~~~-~~~~d~~~~~-----~~~~~D~v~~~~~~~~~~--~~~~  192 (274)
                      ++.....                            ..++. ++.+|+.+..     ..++||+|+++.+++++.  .+..
T Consensus        97 ~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~  176 (263)
T 2a14_A           97 WLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY  176 (263)
T ss_dssp             HHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH
T ss_pred             HHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH
Confidence            7654310                            01243 8899998732     246899999999999863  3566


Q ss_pred             HHHHHHHHhcccCCcEEEEEEccCCCC-CCC----CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          193 AAWAQKIKDFLKPDGELITLMFPISDH-VGG----PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       193 ~~~l~~~~~~L~pgG~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ..++.+++++|||||.+++........ ..+    ..+.++.+++.++++++||+++.+....
T Consensus       177 ~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          177 RAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             HHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence            789999999999999999986432211 001    1123589999999999999999987754

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.81  E-value=3.9e-19  Score=146.64  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=116.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....+ ..+++++.+|+.+. .+.++||+|++..+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            46899999999999999998864 499999999999999999987653 24689999998774 3445899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++....+++++.++|+|||++++.+......    .....+..+.+++.++++++||+++......
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  226 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE  226 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence            9987777889999999999999999977543320    1112233489999999999999999987643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.81  E-value=4e-19  Score=144.19  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=117.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|.++..+++.   ..+++++|+++.+++.++++....+.. +++++.+|+.+ ..+.++||+|++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~  114 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNTVDFIFMAF  114 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSCEEEEEEES
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCCeeEEEeeh
Confidence            45679999999999999999874   479999999999999999998766543 69999999987 44567899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC--cccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP--YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++++  ...+++++.++|+|||.+++.++.......+..  ..++.+++.++++++||+++......
T Consensus       115 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  182 (219)
T 3dh0_A          115 TFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG  182 (219)
T ss_dssp             CGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET
T ss_pred             hhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC
Confidence            9999853  468899999999999999998877655433332  33689999999999999998876643

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.81  E-value=5.6e-19  Score=143.30  Aligned_cols=140  Identities=11%  Similarity=0.141  Sum_probs=112.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCc----ceEEEEcccCCC-CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAK----FVSFLKADFFTW-CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~-~~~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.|++++...+...    +++++.+|+... .+.++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            456899999999999999998754  599999999999999999987766543    799999998653 3346899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-----------CCCCCCCcccCHHHHH----HHHhcCCCcEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-----------DHVGGPPYKVSVSDYE----EVLQPMGFQAI  244 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----~~l~~~Gf~~~  244 (274)
                      +..++++++++....+++.+.++|+|||.+++......           .......+.++.+++.    ++++++||+++
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~  187 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ  187 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence            99999999888888999999999999998777654321           0011223446889998    99999999875


Q ss_pred             EE
Q 024021          245 SI  246 (274)
Q Consensus       245 ~~  246 (274)
                      ..
T Consensus       188 ~~  189 (217)
T 3jwh_A          188 FQ  189 (217)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.81  E-value=6.6e-19  Score=147.06  Aligned_cols=145  Identities=15%  Similarity=0.157  Sum_probs=115.3

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  177 (274)
                      +..++.....++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++..      +++++.+|+.+....++||+
T Consensus        40 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~~fD~  113 (263)
T 3pfg_A           40 LAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGRRFSA  113 (263)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSCCEEE
T ss_pred             HHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccCCcCE
Confidence            334443333456899999999999999999988999999999999999999863      68999999998655789999


Q ss_pred             EEecc-cccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------------------
Q 024021          178 IFDYT-FFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------------------  220 (274)
Q Consensus       178 v~~~~-~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------------------------------  220 (274)
                      |++.. ++++++. +....+++++.++|+|||.+++..+......                                   
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVH  193 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEE
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEE
Confidence            99998 9999864 5677899999999999999999643222110                                   


Q ss_pred             -----CC-C---------CcccCHHHHHHHHhcCCCcEEEEee
Q 024021          221 -----GG-P---------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       221 -----~~-~---------~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                           .+ .         ...++.+++.++|+++||+++.+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  236 (263)
T 3pfg_A          194 YLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPG  236 (263)
T ss_dssp             EEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred             EEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeC
Confidence                 00 0         1124789999999999999988744

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.81  E-value=5.2e-19  Score=151.83  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=123.7

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..++.... .++.+|||+|||+|..+..+++. +.+|+|+|+++.+++.|+++....+..+++++..+|+.+..  ++|
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~f  156 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPV  156 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCc
Confidence            344444443 35579999999999999999875 88999999999999999999988777678999999997653  789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------------------CCCcccCHHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------------------GPPYKVSVSD  231 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~------------------------~~~~~~~~~~  231 (274)
                      |+|++..++++++++....+++++.++|+|||.+++.++.......                        ......+.++
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  236 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM  236 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHH
Confidence            9999999999998767789999999999999999998766543100                        0012348999


Q ss_pred             HHHHHhcCCCcEEEEeeccc
Q 024021          232 YEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      +.++++++||+++.+.....
T Consensus       237 ~~~~l~~aGf~~~~~~~~~~  256 (318)
T 2fk8_A          237 MVEHGEKAGFTVPEPLSLRP  256 (318)
T ss_dssp             HHHHHHHTTCBCCCCEECHH
T ss_pred             HHHHHHhCCCEEEEEEecch
Confidence            99999999999988776543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.81  E-value=6.3e-19  Score=146.22  Aligned_cols=150  Identities=15%  Similarity=0.090  Sum_probs=120.1

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~  174 (274)
                      ...++.... .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++....   .+++++.+|+.+. .+.++
T Consensus        82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~  158 (254)
T 1xtp_A           82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNT  158 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSC
T ss_pred             HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCC
Confidence            344555443 346899999999999999998764 47999999999999999998654   5799999999874 45578


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ||+|++..++++++++....+++++.++|+|||++++.+......     .....+..+.+++.++++++||+++.+...
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  238 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ  238 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence            999999999999987778899999999999999999987532211     112233458899999999999999988764


Q ss_pred             c
Q 024021          250 K  250 (274)
Q Consensus       250 ~  250 (274)
                      .
T Consensus       239 ~  239 (254)
T 1xtp_A          239 E  239 (254)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.80  E-value=1e-18  Score=143.99  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=117.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+. .+++++.+|+.+ ..++++||+|++..++
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~l   97 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   97 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCCCcEEEEEECCch
Confidence            34568999999999999999998888999999999999999998866544 369999999987 3455789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++  ...++.++.++|+|||.+++.+......              .......++.+++.++++++||.++.+....
T Consensus        98 ~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~  175 (239)
T 1xxl_A           98 HHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  175 (239)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence            99864  4678999999999999999976544221              1111233589999999999999999887764


Q ss_pred             cc
Q 024021          251 LA  252 (274)
Q Consensus       251 ~~  252 (274)
                      .+
T Consensus       176 ~~  177 (239)
T 1xxl_A          176 LP  177 (239)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.80  E-value=3.9e-19  Score=147.58  Aligned_cols=142  Identities=19%  Similarity=0.278  Sum_probs=114.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|+++..    ..+++++.+|+.+. .+.++||+|++..++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  118 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLAL  118 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence            3568999999999999999998777 99999999999999999876    25799999999873 446789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------CCCC-------------------------CCcccCH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD----------HVGG-------------------------PPYKVSV  229 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~----------~~~~-------------------------~~~~~~~  229 (274)
                      ++++  ....+++++.++|+|||.+++.......          ...+                         ..++.+.
T Consensus       119 ~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  196 (253)
T 3g5l_A          119 HYIA--SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTV  196 (253)
T ss_dssp             GGCS--CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCH
T ss_pred             hhhh--hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCH
Confidence            9995  3468999999999999999987543210          0000                         0112288


Q ss_pred             HHHHHHHhcCCCcEEEEeecccccC
Q 024021          230 SDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++.++|+++||+++.+.+...+..
T Consensus       197 ~~~~~~l~~aGF~~~~~~e~~~~~~  221 (253)
T 3g5l_A          197 TTYIQTLLKNGFQINSVIEPEPAPE  221 (253)
T ss_dssp             HHHHHHHHHTTEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHcCCeeeeeecCCCchh
Confidence            9999999999999999987654433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.80  E-value=1.6e-18  Score=146.47  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=121.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      ...+...+..  .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+.  +++++.+|+.+....++
T Consensus       109 ~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~  184 (286)
T 3m70_A          109 HGDVVDAAKI--ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQEN  184 (286)
T ss_dssp             CHHHHHHHHH--SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSC
T ss_pred             HHHHHHHhhc--cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCC
Confidence            3445555543  3678999999999999999999899999999999999999999887764  79999999988655788


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC---CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG---GPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ||+|++..++++++++....+++.+.++|+|||.+++..........   ...+.++.+++.++++.  |+++.....
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  260 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNEN  260 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEcc
Confidence            99999999999998888889999999999999997776544332211   22455788999999975  998887654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.80  E-value=3.6e-19  Score=146.76  Aligned_cols=135  Identities=18%  Similarity=0.145  Sum_probs=113.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++         ++++.+|+.+   ..+.++||+|++..+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHF  110 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence            3458999999999999999988888999999999999999865         6788888876   446689999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++++....+++++.++|+|||++++........        ..+....++.+++.++++++||+++.+....
T Consensus       111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence            999987778899999999999999999987654321        1122344688999999999999999887754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.80  E-value=3.7e-19  Score=146.68  Aligned_cols=152  Identities=18%  Similarity=0.105  Sum_probs=119.9

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      ..+..++.....++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+.  +++++.+|+.+....++|
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~f  102 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKF  102 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCE
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCccCCc
Confidence            345555554334678999999999999999998888999999999999999999876643  699999999885444889


Q ss_pred             eEEEecc-cccccC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------------------------
Q 024021          176 DLIFDYT-FFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------------------------  219 (274)
Q Consensus       176 D~v~~~~-~~~~~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------------------------  219 (274)
                      |+|++.. ++++++ ++....+++++.++|+|||.+++........                                  
T Consensus       103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (246)
T 1y8c_A          103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYIS  182 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEE
Confidence            9999998 999984 3667899999999999999999854422100                                  


Q ss_pred             ----CCC---------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          220 ----VGG---------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       220 ----~~~---------~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                          ..+         ....++.+++.++++++||+++.+...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  225 (246)
T 1y8c_A          183 FFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             EEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             EEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence                000         012358999999999999999988653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.80  E-value=1.1e-19  Score=147.16  Aligned_cols=149  Identities=16%  Similarity=0.103  Sum_probs=117.5

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D  176 (274)
                      ..++.....++.+|||+|||+|..+..+++ .+.+++++|+++.+++.|+++....+..++++++.+|+.+ ..+.++||
T Consensus        34 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  113 (219)
T 3dlc_A           34 ENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYAD  113 (219)
T ss_dssp             HHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEE
T ss_pred             HHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccccc
Confidence            334443344445999999999999999988 4779999999999999999999887776789999999988 45567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------C-C-------CCCcccCHHHHHHHHh
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------V-G-------GPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~-~-------~~~~~~~~~~~~~~l~  237 (274)
                      +|++..++++++  ....+++++.++|+|||.+++........           . .       ......+.+++.++++
T Consensus       114 ~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  191 (219)
T 3dlc_A          114 LIVSRGSVFFWE--DVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLD  191 (219)
T ss_dssp             EEEEESCGGGCS--CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHH
T ss_pred             EEEECchHhhcc--CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHH
Confidence            999999999984  34679999999999999999876332210           0 0       0011236799999999


Q ss_pred             cCCCcEEEEeec
Q 024021          238 PMGFQAISIVDN  249 (274)
Q Consensus       238 ~~Gf~~~~~~~~  249 (274)
                      ++||+.+++...
T Consensus       192 ~aGf~~v~~~~~  203 (219)
T 3dlc_A          192 EIGISSYEIILG  203 (219)
T ss_dssp             HHTCSSEEEEEE
T ss_pred             HcCCCeEEEEec
Confidence            999999887653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.79  E-value=1.7e-18  Score=143.91  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=120.2

Q ss_pred             HHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CC
Q 024021           96 PIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CP  171 (274)
Q Consensus        96 ~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~  171 (274)
                      .....++...  ..++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.++++....+..++++++.+|+.+. .+
T Consensus        32 ~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (257)
T 3f4k_A           32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ  111 (257)
T ss_dssp             HHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC
T ss_pred             HHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC
Confidence            3344455543  2345799999999999999998854 499999999999999999998888777899999999873 45


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------CCCcccCHHHHHHHHhcCCC
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------GPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      .++||+|++..++++++   ...+++.+.++|+|||++++.+........          ..+...+.+++.++++++||
T Consensus       112 ~~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  188 (257)
T 3f4k_A          112 NEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGY  188 (257)
T ss_dssp             TTCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTE
T ss_pred             CCCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCC
Confidence            68899999999999984   357899999999999999998743211100          01123478999999999999


Q ss_pred             cEEEEeecc
Q 024021          242 QAISIVDNK  250 (274)
Q Consensus       242 ~~~~~~~~~  250 (274)
                      +++......
T Consensus       189 ~~v~~~~~~  197 (257)
T 3f4k_A          189 TPTAHFILP  197 (257)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEECC
Confidence            999976644

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.79  E-value=7.2e-19  Score=143.09  Aligned_cols=135  Identities=19%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++       .++.+..+|+.+.     .+..+||+|++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEEC
Confidence            4468999999999999999999899999999999999999987       2467788777653     334569999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC---------------------CCcccCHHHHHHHHhcCC
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG---------------------PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~G  240 (274)
                      .+++ .+  ....+++.+.++|+|||++++..+.......+                     ..+..+.+++.++++++|
T Consensus       124 ~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  200 (227)
T 3e8s_A          124 FALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG  200 (227)
T ss_dssp             SCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred             chhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence            9998 43  34578999999999999999988754322111                     012248999999999999


Q ss_pred             CcEEEEeeccc
Q 024021          241 FQAISIVDNKL  251 (274)
Q Consensus       241 f~~~~~~~~~~  251 (274)
                      |+++.+.....
T Consensus       201 f~~~~~~~~~~  211 (227)
T 3e8s_A          201 LRLVSLQEPQH  211 (227)
T ss_dssp             EEEEEEECCCC
T ss_pred             CeEEEEecCCC
Confidence            99999887443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.79  E-value=1.6e-18  Score=143.25  Aligned_cols=140  Identities=19%  Similarity=0.158  Sum_probs=113.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC------CCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~D~v~~  180 (274)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    .+++++.+|+.+....      ..||+|++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEEE
Confidence            4567999999999999999998777999999999999999998732    3699999999873221      24899999


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHhc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~  238 (274)
                      ..++++++++....+++++.++|+|||++++.++...+.                      ....+..++.+++.+++  
T Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  208 (245)
T 3ggd_A          131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--  208 (245)
T ss_dssp             ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--
T ss_pred             cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--
Confidence            999999987778899999999999999999888754321                      01112336889999999  


Q ss_pred             CCCcEEEEeecccc
Q 024021          239 MGFQAISIVDNKLA  252 (274)
Q Consensus       239 ~Gf~~~~~~~~~~~  252 (274)
                      +||+++........
T Consensus       209 aGf~~~~~~~~~~~  222 (245)
T 3ggd_A          209 PDFEILSQGEGLFQ  222 (245)
T ss_dssp             TTEEEEEEECCBCC
T ss_pred             CCCEEEeccccccc
Confidence            89999987765443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.78  E-value=3.3e-18  Score=149.52  Aligned_cols=140  Identities=14%  Similarity=0.122  Sum_probs=118.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~  183 (274)
                      ...+|||||||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+..  .+++||+|++..+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            457999999999999999987  7789999999 9999999999988777678999999999852  2378999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------------CCCCcccCHHHHHHHHhcCCCcEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------------GGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      +++++++....+++++.++|+|||++++.+.......                   .+.....+.+++.++++++||+++
T Consensus       258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v  337 (363)
T 3dp7_A          258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE  337 (363)
T ss_dssp             STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEES
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEE
Confidence            9999988888999999999999999999886544321                   111223489999999999999998


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ++..
T Consensus       338 ~~~~  341 (363)
T 3dp7_A          338 EIQD  341 (363)
T ss_dssp             CCCC
T ss_pred             EEEe
Confidence            7764

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.78  E-value=1.9e-18  Score=139.17  Aligned_cols=142  Identities=20%  Similarity=0.182  Sum_probs=114.3

Q ss_pred             CCCCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+ ..++..+.+++++|+++.+++.++++....+  .+++++.+|+.+. .+.++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            45689999999999984 4556688899999999999999999876544  4689999999884 446789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------CCC---cccCHHHHHHHHhcCCCcEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------GPP---YKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ++++.+....+++++.++|+|||.+++..+...+...                +.+   ..++.+++.++++..||....
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            9998778889999999999999999998876543211                111   245889999999999988776


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      .....
T Consensus       180 ~~~~~  184 (209)
T 2p8j_A          180 DRVVE  184 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            55433

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.78  E-value=5.8e-18  Score=146.24  Aligned_cols=143  Identities=17%  Similarity=0.180  Sum_probs=119.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|++ .+++.|+++....+..+++++..+|+.+...++.||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            4557999999999999999887  47799999999 99999999987766667899999999874434459999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG----------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++++++....+++++.++|+|||++++.++........                .....+.+++.++++++||+.+++..
T Consensus       243 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~  322 (335)
T 2r3s_A          243 HHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHS  322 (335)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEE
Confidence            99988888899999999999999999988765432111                12235799999999999999998866


Q ss_pred             cc
Q 024021          249 NK  250 (274)
Q Consensus       249 ~~  250 (274)
                      ..
T Consensus       323 ~~  324 (335)
T 2r3s_A          323 LP  324 (335)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.78  E-value=1.1e-18  Score=145.51  Aligned_cols=177  Identities=14%  Similarity=0.102  Sum_probs=126.9

Q ss_pred             ccchhHhhhcCCCCccCCC----ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHH
Q 024021           75 SGGWEKCWEEGLTPWDIGQ----PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~  149 (274)
                      ..+|+.+|......+....    +...+..++.....++.+|||+|||+|..+..++..+. +|+++|+++.+++.++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~   98 (265)
T 2i62_A           19 RDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKW   98 (265)
T ss_dssp             HHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHH
Confidence            3578888865443321100    01122234443234567999999999999999988777 999999999999999998


Q ss_pred             hhcCCC----------------------------Ccce-EEEEcccCCCC--CC---CCeeEEEecccccccCh--hHHH
Q 024021          150 SSSLPN----------------------------AKFV-SFLKADFFTWC--PT---ELFDLIFDYTFFCAIEP--EMRA  193 (274)
Q Consensus       150 ~~~~~~----------------------------~~~~-~~~~~d~~~~~--~~---~~~D~v~~~~~~~~~~~--~~~~  193 (274)
                      ....+.                            ..++ +++.+|+.+..  +.   ++||+|++..+++++++  +...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~  178 (265)
T 2i62_A           99 LKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYR  178 (265)
T ss_dssp             HTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHH
Confidence            765421                            0127 89999998743  34   68999999999996543  3678


Q ss_pred             HHHHHHHhcccCCcEEEEEEccCCCC--CCC---CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          194 AWAQKIKDFLKPDGELITLMFPISDH--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       194 ~~l~~~~~~L~pgG~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .++.++.++|+|||.+++........  ...   ....++.+++.++++++||+++.+.....
T Consensus       179 ~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  241 (265)
T 2i62_A          179 TALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQ  241 (265)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             HHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecc
Confidence            89999999999999999877433211  000   12335788999999999999999887653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.78  E-value=7.6e-18  Score=145.47  Aligned_cols=140  Identities=12%  Similarity=0.054  Sum_probs=117.5

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      ..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++|..+|+....+. +||+|++.+++++
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh~  247 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLHD  247 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGGG
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhcc
Confidence            47999999999999999987  6779999999 999999999988877778899999999865444 8999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-----------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-----------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++++....++++++++|+|||++++.+....+....           .....+.+++.++++++||+++++....
T Consensus       248 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  322 (332)
T 3i53_A          248 WDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPIS  322 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence            998878899999999999999999988755432000           0112478999999999999999887643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.78  E-value=8.2e-18  Score=133.50  Aligned_cols=130  Identities=19%  Similarity=0.208  Sum_probs=111.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-cc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~-~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.      .+++++.+|+.+ ..+.++||+|++. .+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~  117 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNV  117 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcH
Confidence            346789999999999999999988889999999999999999886      358899999987 3445789999998 78


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +++++.+....+++.+.++|+|||.+++......        ..+.+++.++++++||.++.....
T Consensus       118 ~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          118 MGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------GWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------SCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             HhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------CcCHHHHHHHHHHcCCEEeeeecc
Confidence            8888777788999999999999999998764332        247899999999999999887654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.77  E-value=2.5e-18  Score=134.07  Aligned_cols=132  Identities=22%  Similarity=0.304  Sum_probs=111.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.      +++++..+|  ...+.++||+|++..++++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~v~~~~~d--~~~~~~~~D~v~~~~~l~~   87 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF------DSVITLSDP--KEIPDNSVDFILFANSFHD   87 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC------TTSEEESSG--GGSCTTCEEEEEEESCSTT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC------CCcEEEeCC--CCCCCCceEEEEEccchhc
Confidence            45679999999999999999987679999999999999999982      579999999  4455678999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc--ccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY--KVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++  ...+++++.++|+|||.+++.++.......+++.  .++.+++.++++  ||+++......
T Consensus        88 ~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~  149 (170)
T 3i9f_A           88 MDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPT  149 (170)
T ss_dssp             CSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred             ccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence            853  4688999999999999999998876655444333  368999999999  99999887654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.77  E-value=5.2e-18  Score=143.87  Aligned_cols=148  Identities=18%  Similarity=0.182  Sum_probs=118.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++.+. +++|+|+++.+++.|+++....+...+++++.+|+.+. . +.++||+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            35668999999999999988887555 99999999999999999998776656899999999873 3 467899999999


Q ss_pred             cccc--cChhHHHHHHHHHHhcccCCcEEEEEEccCCC-------------------------CC-CCC-----------
Q 024021          183 FFCA--IEPEMRAAWAQKIKDFLKPDGELITLMFPISD-------------------------HV-GGP-----------  223 (274)
Q Consensus       183 ~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-------------------------~~-~~~-----------  223 (274)
                      ++++  .+.+....+++.+.++|+|||.+++.......                         .. .+.           
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  221 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN  221 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence            9987  45567789999999999999999987654210                         00 000           


Q ss_pred             ---CcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          224 ---PYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       224 ---~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                         ...++.+++.++++++||+++........+
T Consensus       222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~  254 (298)
T 1ri5_A          222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFY  254 (298)
T ss_dssp             SEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHH
T ss_pred             CCcccccCHHHHHHHHHHcCCEEEEecCHHHHH
Confidence               123578999999999999999987755433

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.77  E-value=5.4e-18  Score=134.01  Aligned_cols=153  Identities=16%  Similarity=0.107  Sum_probs=108.6

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~  172 (274)
                      ......++.....++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+. ++++++..|....  .++
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhcc
Confidence            3445556655556678999999999999999999888999999999999999999987666 6799999777662  346


Q ss_pred             CCeeEEEeccccccc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          173 ELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ++||+|+++..+...       ..+....+++++.++|+|||.+++..+.....  +........++.+.+...+|.+..
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~  165 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDG--GDMEKDAVLEYVIGLDQRVFTAML  165 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCC--CHHHHHHHHHHHHhCCCceEEEEE
Confidence            789999987322111       22455678899999999999999988754321  111111234445555566788877


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      .....
T Consensus       166 ~~~~~  170 (185)
T 3mti_A          166 YQPLN  170 (185)
T ss_dssp             EEESS
T ss_pred             ehhhc
Confidence            76644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.77  E-value=1.5e-17  Score=145.75  Aligned_cols=139  Identities=20%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....++.++++|..+|+....+. .||+|++..+++
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh  279 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GADVYLIKHVLH  279 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SCSEEEEESCGG
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-CceEEEhhhhhc
Confidence            347999999999999999987  5779999999 999999999988877778899999999865544 899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++++....+++++.++|+|||++++.+....+....             .....+.+++.++++++||+++++..
T Consensus       280 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          280 DWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP  355 (369)
T ss_dssp             GSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence            9998877889999999999999999988655432110             01125789999999999999999866

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.77  E-value=7e-18  Score=142.58  Aligned_cols=135  Identities=20%  Similarity=0.232  Sum_probs=110.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.|+++....+  .+++++.+|+.+...+++||+|++..+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~fD~v~~~~~   98 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF   98 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCcCCCeeEEEECCh
Confidence            35689999999999999999884   5799999999999999999987665  379999999998655678999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc-----CC---CC---------------------CCCCCcccCHHHHHH
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-----IS---DH---------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~-----~~---~~---------------------~~~~~~~~~~~~~~~  234 (274)
                      ++++++.  ..+++++.++|+|||++++.+..     ..   +.                     ..+.. .....++.+
T Consensus        99 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~  175 (284)
T 3gu3_A           99 LLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD-GNIGMKIPI  175 (284)
T ss_dssp             GGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCC-TTGGGTHHH
T ss_pred             hhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccc-ccHHHHHHH
Confidence            9999643  58999999999999999988765     11   00                     00111 124678999


Q ss_pred             HHhcCCCcEEEE
Q 024021          235 VLQPMGFQAISI  246 (274)
Q Consensus       235 ~l~~~Gf~~~~~  246 (274)
                      +|+++||..+..
T Consensus       176 ~l~~aGF~~v~~  187 (284)
T 3gu3_A          176 YLSELGVKNIEC  187 (284)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHHcCCCeEEE
Confidence            999999999987

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.77  E-value=6.2e-18  Score=142.09  Aligned_cols=157  Identities=23%  Similarity=0.313  Sum_probs=121.3

Q ss_pred             HHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC
Q 024021           96 PIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (274)
Q Consensus        96 ~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~  170 (274)
                      ..+..++...  ..++.+|||+|||+|.++..+++  ++.+++++|+++.+++.++++....+. .+++++.+|+.+ ..
T Consensus        23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~  101 (276)
T 3mgg_A           23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPF  101 (276)
T ss_dssp             CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCS
T ss_pred             HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCC
Confidence            3445555433  24568999999999999999987  378999999999999999999877665 369999999988 44


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---C-----------------CCCcccCHH
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---G-----------------GPPYKVSVS  230 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---~-----------------~~~~~~~~~  230 (274)
                      +.++||+|++..+++++++.  ..+++.+.++|+|||.+++.+.......   .                 ......+..
T Consensus       102 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (276)
T 3mgg_A          102 EDSSFDHIFVCFVLEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGR  179 (276)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGG
T ss_pred             CCCCeeEEEEechhhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHH
Confidence            56789999999999999654  4789999999999999999774321110   0                 001113568


Q ss_pred             HHHHHHhcCCCcEEEEeecccccCC
Q 024021          231 DYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~~~~~~~~  255 (274)
                      ++.++|+++||+++.+.....+...
T Consensus       180 ~l~~~l~~aGf~~v~~~~~~~~~~~  204 (276)
T 3mgg_A          180 QIYPLLQESGFEKIRVEPRMVYIDS  204 (276)
T ss_dssp             GHHHHHHHTTCEEEEEEEEEEEECT
T ss_pred             HHHHHHHHCCCCeEEEeeEEEECCC
Confidence            9999999999999999876655443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.77  E-value=7.7e-18  Score=146.55  Aligned_cols=137  Identities=11%  Similarity=0.073  Sum_probs=117.1

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF  184 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~  184 (274)
                      +.+|||+|||+|.++..+++  ++.+++++|+ +.+++.++++....+..++++++.+|+.+..  +++.||+|++..++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            57999999999999999987  5779999999 8899999999887777778999999999854  56779999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------------CCcccCHHHHHHHHhcCCCcEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG----------------PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ++++++....+++++.++|+|||++++.+....+....                .....+.+++.++++++||++++.
T Consensus       259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence            99998888899999999999999999988654433211                122357999999999999999884

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=9.7e-18  Score=139.42  Aligned_cols=162  Identities=20%  Similarity=0.222  Sum_probs=119.3

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      ....++.... .++.+|||+|||+|.++..+++.  +.+++++|+++.+++.++++.      .+++++.+|+.+..+.+
T Consensus        21 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~   94 (259)
T 2p35_A           21 PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKPAQ   94 (259)
T ss_dssp             HHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCCSS
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCccC
Confidence            3445555543 34579999999999999999874  889999999999999999883      46899999998855677


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------C----CCCCcccCHHH
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------V----GGPPYKVSVSD  231 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------~----~~~~~~~~~~~  231 (274)
                      +||+|+++.++++++  +...++.++.++|+|||.+++........                  .    .......+.++
T Consensus        95 ~fD~v~~~~~l~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T 2p35_A           95 KADLLYANAVFQWVP--DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD  172 (259)
T ss_dssp             CEEEEEEESCGGGST--THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred             CcCEEEEeCchhhCC--CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence            899999999999995  34678999999999999999987543211                  0    11223458999


Q ss_pred             HHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024021          232 YEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      +.++|+++||.+..... .... ...+.+.+..|.+.
T Consensus       173 ~~~~l~~aGf~v~~~~~-~~~~-~~~~~~~~~~~l~~  207 (259)
T 2p35_A          173 YFNALSPKSSRVDVWHT-VYNH-PMKDADSIVEWVKG  207 (259)
T ss_dssp             HHHHHGGGEEEEEEEEE-EEEE-EESCHHHHHHHHTT
T ss_pred             HHHHHHhcCCceEEEEE-Eeee-ccCCchHHhhhhhc
Confidence            99999999997543322 1111 12234555555543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.76  E-value=7.2e-18  Score=142.80  Aligned_cols=154  Identities=14%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCC-----------------C---
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPN-----------------A---  156 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------------~---  156 (274)
                      +...+.....++.+|||+|||+|.....++. .+.+|+|+|+|+.+++.|++++.....                 .   
T Consensus        61 l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  140 (289)
T 2g72_A           61 LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW  140 (289)
T ss_dssp             HHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred             HHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccch
Confidence            3344433234668999999999995544444 467999999999999999986543210                 0   


Q ss_pred             ---------cceEEEEcccCCC-------CCCCCeeEEEecccccccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024021          157 ---------KFVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLMFPISD  218 (274)
Q Consensus       157 ---------~~~~~~~~d~~~~-------~~~~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~~~~~~~~  218 (274)
                               ..++++.+|+.+.       .++++||+|+++.+++++++  +....++.++.++|+|||++++.......
T Consensus       141 ~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~  220 (289)
T 2g72_A          141 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES  220 (289)
T ss_dssp             HHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred             hhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc
Confidence                     0156777788762       22356999999999998653  36788999999999999999986432211


Q ss_pred             C--CCC---CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          219 H--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       219 ~--~~~---~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .  ...   ....++.+++.++|+++||+++.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~  258 (289)
T 2g72_A          221 WYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM  258 (289)
T ss_dssp             EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             eEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence            0  001   12346899999999999999999877653

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.76  E-value=2.7e-18  Score=141.34  Aligned_cols=138  Identities=20%  Similarity=0.242  Sum_probs=111.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++...    .+++++.+|+.+. .+.++||+|++..++
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  117 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLAL  117 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEeccc
Confidence            4568999999999999999988887 999999999999999988754    3699999999874 446789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCC---CC-------------------------------CCCCcccCHH
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD---HV-------------------------------GGPPYKVSVS  230 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~---~~-------------------------------~~~~~~~~~~  230 (274)
                      +++++  ...+++++.++|+|||.+++.......   ..                               ....++.+.+
T Consensus       118 ~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  195 (243)
T 3bkw_A          118 HYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVG  195 (243)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHH
T ss_pred             cccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHH
Confidence            99853  468899999999999999987643210   00                               0011224789


Q ss_pred             HHHHHHhcCCCcEEEEeecc
Q 024021          231 DYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++.++++++||+++.+....
T Consensus       196 ~~~~~l~~aGF~~~~~~~~~  215 (243)
T 3bkw_A          196 TTLNALIRSGFAIEHVEEFC  215 (243)
T ss_dssp             HHHHHHHHTTCEEEEEEECC
T ss_pred             HHHHHHHHcCCEeeeeccCC
Confidence            99999999999999987643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=3e-18  Score=143.01  Aligned_cols=140  Identities=16%  Similarity=0.090  Sum_probs=112.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++++.+|+|+|+++.+++.++++.       +++++.+|+.+ +.+.++||+|++..+++
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            45689999999999999999999999999999999988776543       69999999988 44568999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC-------------CcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP-------------PYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      +++  +...+++++.++|+ ||++++.++.........             ....+.+++. +++++||..+.+.....+
T Consensus       106 ~~~--~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~~~p  181 (261)
T 3ege_A          106 HFS--HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPFLLP  181 (261)
T ss_dssp             GCS--SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEECCEE
T ss_pred             hcc--CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEecCC
Confidence            995  44688999999999 998888877543221100             1123567788 999999999999887776


Q ss_pred             cCCcc
Q 024021          253 IGPRK  257 (274)
Q Consensus       253 ~~~~~  257 (274)
                      ....+
T Consensus       182 ~~~~~  186 (261)
T 3ege_A          182 HDLSD  186 (261)
T ss_dssp             TTCSB
T ss_pred             CcCcc
Confidence            66543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.75  E-value=1.5e-17  Score=135.43  Aligned_cols=142  Identities=24%  Similarity=0.281  Sum_probs=111.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.|+++....+  .+++++.+|+.+. .+.++||+|+++.+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            346899999999999999998887899999999999999999987665  5799999999883 4557899999999966


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------CCCCCc-----------------------------ccC
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------VGGPPY-----------------------------KVS  228 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------~~~~~~-----------------------------~~~  228 (274)
                      +.+......+++.+.++|+|||.+++........        ..+..+                             ..-
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  194 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW  194 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence            6665677889999999999999999876541100        000000                             000


Q ss_pred             HHHHHHHHhcCCCcEEEEeecc
Q 024021          229 VSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       229 ~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ..++.++++++||..+++....
T Consensus       195 ~~~~~~~l~~~GF~~v~~~~~~  216 (227)
T 1ve3_A          195 GKTGVELLAKLYFTKEAEEKVG  216 (227)
T ss_dssp             CHHHHHHHHTTTEEEEEEEEET
T ss_pred             chHHHHHHHHHhhhHHHHHHhC
Confidence            1578999999999999887743

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.75  E-value=4.2e-18  Score=144.52  Aligned_cols=143  Identities=19%  Similarity=0.259  Sum_probs=108.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC----------------------------
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA----------------------------  156 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~----------------------------  156 (274)
                      .++.+|||+|||+|.++..+++  .+.+|+|+|+++.+++.|+++....+..                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            3568999999999999999987  3679999999999999999987654321                            


Q ss_pred             -----------------------------cceEEEEcccCCCC------CCCCeeEEEeccccccc----ChhHHHHHHH
Q 024021          157 -----------------------------KFVSFLKADFFTWC------PTELFDLIFDYTFFCAI----EPEMRAAWAQ  197 (274)
Q Consensus       157 -----------------------------~~~~~~~~d~~~~~------~~~~~D~v~~~~~~~~~----~~~~~~~~l~  197 (274)
                                                   .+++|+.+|+....      ..++||+|++..+++++    +++....+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         57999999998633      56789999999999777    4457788999


Q ss_pred             HHHhcccCCcEEEEEEccCCC--CCCCC---------CcccCHHHHHHHHhc--CCCcEEEEeec
Q 024021          198 KIKDFLKPDGELITLMFPISD--HVGGP---------PYKVSVSDYEEVLQP--MGFQAISIVDN  249 (274)
Q Consensus       198 ~~~~~L~pgG~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~l~~--~Gf~~~~~~~~  249 (274)
                      ++.++|+|||++++.......  .....         ...+.++++.++|.+  +||..+++...
T Consensus       205 ~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            999999999999986432110  00000         112468899999999  99998877653

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.75  E-value=1.6e-17  Score=136.40  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=92.2

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  177 (274)
                      +..++.....++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.      .+++++.+|+.+....++||+
T Consensus        30 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~  103 (239)
T 3bxo_A           30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSA  103 (239)
T ss_dssp             HHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEE
T ss_pred             HHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcE
Confidence            33444332355689999999999999999887779999999999999999885      358999999988555678999


Q ss_pred             EEe-cccccccCh-hHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          178 IFD-YTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~-~~~~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      |++ ..++++++. +....+++++.++|+|||.+++..+.
T Consensus       104 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A          104 VVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            995 458888853 56788999999999999999987643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=133.86  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=116.7

Q ss_pred             cccchhHhhhcCCC--CccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHh
Q 024021           74 SSGGWEKCWEEGLT--PWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELS  150 (274)
Q Consensus        74 ~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~  150 (274)
                      ...+|+..|.....  .+........+..++.....++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.
T Consensus         6 ~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~   85 (215)
T 2pxx_A            6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACY   85 (215)
T ss_dssp             CHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHT
T ss_pred             chhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhc
Confidence            34789999987652  12222234446666655456678999999999999999988776 8999999999999999987


Q ss_pred             hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC-------------hhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       151 ~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ...   ++++++.+|+.+ ..+.++||+|++..+++++.             ......+++++.++|+|||.+++..+..
T Consensus        86 ~~~---~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           86 AHV---PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTC---TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccC---CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            642   479999999988 44557899999998887764             3456789999999999999999988533


Q ss_pred             CCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          217 SDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                                  ......++...|+
T Consensus       163 ------------~~~~~~~~~~~~~  175 (215)
T 2pxx_A          163 ------------PHFRTRHYAQAYY  175 (215)
T ss_dssp             ------------HHHHHHHHCCGGG
T ss_pred             ------------cHHHHHHHhcccc
Confidence                        2334456666665

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.75  E-value=1.6e-17  Score=143.54  Aligned_cols=149  Identities=17%  Similarity=0.154  Sum_probs=119.2

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      ..++.....++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+..+ ++||
T Consensus       158 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D  235 (334)
T 2ip2_A          158 HEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SNGD  235 (334)
T ss_dssp             HHHHHHSCCTTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SSCS
T ss_pred             HHHHHhCCCCCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CCCC
Confidence            334443333338999999999999999887  5779999999 99999999987665555689999999988544 6799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--------------CCcccCHHHHHHHHhcCCCc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--------------PPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      +|++..++++++++....+++++.++|+|||++++.+....+....              .....+.+++.++++++||+
T Consensus       236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  315 (334)
T 2ip2_A          236 IYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA  315 (334)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence            9999999999988877899999999999999999988654332110              01224789999999999999


Q ss_pred             EEEEeec
Q 024021          243 AISIVDN  249 (274)
Q Consensus       243 ~~~~~~~  249 (274)
                      ++++...
T Consensus       316 ~~~~~~~  322 (334)
T 2ip2_A          316 VERIVDL  322 (334)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEC
Confidence            9888653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.75  E-value=6e-17  Score=141.32  Aligned_cols=150  Identities=18%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      ..++.... .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+...+ .+
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  257 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA  257 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC-CC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC-CC
Confidence            34444433 3457999999999999999987  5779999999 999999999988777667899999999875332 34


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC---------------C--CCcccCHHHHHHHHhc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG---------------G--PPYKVSVSDYEEVLQP  238 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~  238 (274)
                      |+|++..++++++++....+++++.++|+|||++++.++...+...               +  .....+.+++.+++++
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~  337 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILES  337 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHH
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHH
Confidence            9999999999998877889999999999999999888765433200               1  0111689999999999


Q ss_pred             CCCcEEEEeecc
Q 024021          239 MGFQAISIVDNK  250 (274)
Q Consensus       239 ~Gf~~~~~~~~~  250 (274)
                      +||+++++....
T Consensus       338 aGf~~v~~~~~~  349 (359)
T 1x19_A          338 LGYKDVTMVRKY  349 (359)
T ss_dssp             HTCEEEEEEEET
T ss_pred             CCCceEEEEecC
Confidence            999998887643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.75  E-value=1.9e-17  Score=137.83  Aligned_cols=140  Identities=15%  Similarity=0.147  Sum_probs=111.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++..  ....+++++.+|+.+. .+.++||+|++..+++
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA--GVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT--TSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--ccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            456799999999999999999988999999999999999999972  2236799999999874 4567899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCC-CC--------------CCC-----CcccCHHHHHHHHhcCCCcEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD-HV--------------GGP-----PYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-~~--------------~~~-----~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ++++  ...+++++.++|+|||.+++. +...+ ..              .+.     ....+.+++.++++++||.++.
T Consensus       116 ~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  192 (263)
T 2yqz_A          116 LVPD--WPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRT  192 (263)
T ss_dssp             GCTT--HHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             hcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcce
Confidence            9863  467899999999999999887 32221 00              011     1235688999999999999877


Q ss_pred             Eeeccc
Q 024021          246 IVDNKL  251 (274)
Q Consensus       246 ~~~~~~  251 (274)
                      ......
T Consensus       193 ~~~~~~  198 (263)
T 2yqz_A          193 REVARW  198 (263)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            654433

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.75  E-value=1.7e-17  Score=134.33  Aligned_cols=128  Identities=17%  Similarity=0.185  Sum_probs=102.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+..+.++||+|++..++++
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            34579999999999999999998889999999999999999998765   379999999998767789999999999999


Q ss_pred             cCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024021          187 IEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       187 ~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (274)
                      +++ +....+++++.++|+|||.+++........... ......+.+..++..
T Consensus       127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  178 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRW-GHVAGAETVITILTE  178 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHT-TCSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhh-hhhhhHHHHHHHHHh
Confidence            974 566788999999999999999876433211000 012345666666654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.75  E-value=2.2e-17  Score=135.91  Aligned_cols=140  Identities=19%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc-ccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT-FFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~-~~~  185 (274)
                      .++.+|||+|||+|..+..+++. .+++++|+++.+++.|+++....+  .+++++.+|+.+....++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            44689999999999999999888 899999999999999999987654  46999999998855457899999986 888


Q ss_pred             cc-ChhHHHHHHHHHHhcccCCcEEEEEEccCC--------------------------CC---------------CCC-
Q 024021          186 AI-EPEMRAAWAQKIKDFLKPDGELITLMFPIS--------------------------DH---------------VGG-  222 (274)
Q Consensus       186 ~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~--------------------------~~---------------~~~-  222 (274)
                      ++ +.+....+++.+.++|+|||.+++......                          ..               ..+ 
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGR  188 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSC
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCc
Confidence            88 456778899999999999999988442210                          00               000 


Q ss_pred             --------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          223 --------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       223 --------~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                              ....++.+++.++++++||+++.+...
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  223 (243)
T 3d2l_A          189 YDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGD  223 (243)
T ss_dssp             EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEET
T ss_pred             eEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecC
Confidence                    002358999999999999999988653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.74  E-value=2.6e-17  Score=139.47  Aligned_cols=117  Identities=19%  Similarity=0.196  Sum_probs=95.5

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC---CcceEEEEcccCCC---
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN---AKFVSFLKADFFTW---  169 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~---  169 (274)
                      ..+..++.  ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++......   ..++.+..+|+...   
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            33444444  23568999999999999999999889999999999999999987633221   14688999998873   


Q ss_pred             -CCCCCeeEEEec-ccccccCh-----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          170 -CPTELFDLIFDY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 -~~~~~~D~v~~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .+.++||+|++. .+++|+++     +....+++++.++|+|||++++...
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence             467899999998 89999976     6678999999999999999998664

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.74  E-value=2.7e-17  Score=144.17  Aligned_cols=142  Identities=18%  Similarity=0.108  Sum_probs=115.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+..+. .||+|++..++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  258 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TADVVLLSFVL  258 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CCCEEEEeccc
Confidence            3457999999999999999887  4679999999 999999999988777767899999999874443 49999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEc--cCCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF--PISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++++++....+++++.++|+|||++++.+.  ...+....              .....+.+++.++++++||+++.+..
T Consensus       259 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~  338 (374)
T 1qzz_A          259 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT  338 (374)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            999887777899999999999999999887  32211000              01224899999999999999998876


Q ss_pred             cc
Q 024021          249 NK  250 (274)
Q Consensus       249 ~~  250 (274)
                      ..
T Consensus       339 ~~  340 (374)
T 1qzz_A          339 SG  340 (374)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.74  E-value=3.3e-17  Score=131.81  Aligned_cols=127  Identities=12%  Similarity=0.027  Sum_probs=105.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++....+..++++++.+|+.+ ....+.||+|++...+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            345689999999999999999888889999999999999999999887766589999999988 4444579999987743


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                         +   .. +++.+.++|+|||++++......          +..++.+++++.||++..+...
T Consensus       133 ---~---~~-~l~~~~~~LkpgG~lv~~~~~~~----------~~~~~~~~l~~~g~~i~~i~~~  180 (204)
T 3njr_A          133 ---S---QA-LYDRLWEWLAPGTRIVANAVTLE----------SETLLTQLHARHGGQLLRIDIA  180 (204)
T ss_dssp             ---C---HH-HHHHHHHHSCTTCEEEEEECSHH----------HHHHHHHHHHHHCSEEEEEEEE
T ss_pred             ---c---HH-HHHHHHHhcCCCcEEEEEecCcc----------cHHHHHHHHHhCCCcEEEEEee
Confidence               1   23 88999999999999999774332          5778889999999998887553

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.74  E-value=7.2e-18  Score=140.22  Aligned_cols=108  Identities=16%  Similarity=0.205  Sum_probs=89.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeE
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~  177 (274)
                      .+++........+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|++.       ++++++++|+.+ +.++++||+
T Consensus        30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~~sfD~  102 (257)
T 4hg2_A           30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPPASVDV  102 (257)
T ss_dssp             HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCSSCEEE
T ss_pred             HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccCCcccE
Confidence            333333233457999999999999999999999999999999999877532       579999999988 556789999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      |++..++++++.   ..++.++.++|||||.+++..+..
T Consensus       103 v~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A          103 AIAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             EEECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECCC
Confidence            999999988864   468899999999999999887654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.74  E-value=2.3e-16  Score=137.25  Aligned_cols=147  Identities=17%  Similarity=0.167  Sum_probs=118.1

Q ss_pred             HHHhcCCCC-CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021          100 HLHQSGALP-KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus       100 ~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      .++...+.+ ..+|+|+|||+|..+..+++  ++.+++..|. |.+++.|+++....+ .++++++.+|+++.. ...+|
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~-~~~~D  246 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP-LPEAD  246 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC-CCCCS
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC-CCCce
Confidence            334433333 36999999999999999987  7779999997 899999999886543 578999999998753 34589


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC---------------cccCHHHHHHHHhcCCC
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP---------------YKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~Gf  241 (274)
                      +|++..++++++++....+++++++.|+|||++++.+....+...++.               ...+.+++.++++++||
T Consensus       247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf  326 (353)
T 4a6d_A          247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGF  326 (353)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTC
T ss_pred             EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence            999999999999988889999999999999999999876544322221               12378999999999999


Q ss_pred             cEEEEeec
Q 024021          242 QAISIVDN  249 (274)
Q Consensus       242 ~~~~~~~~  249 (274)
                      +.+++...
T Consensus       327 ~~v~v~~~  334 (353)
T 4a6d_A          327 RDFQFKKT  334 (353)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEEEc
Confidence            99988653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.74  E-value=2.6e-17  Score=138.16  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=113.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-C--CeEEEEeCChH------HHHHHHHHhhcCCCCcceEEEEcc-cCC---CCCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDI------AIKKAEELSSSLPNAKFVSFLKAD-FFT---WCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~~~~------~~~~a~~~~~~~~~~~~~~~~~~d-~~~---~~~~~  173 (274)
                      .++.+|||+|||+|.++..+++. +  .+|+|+|+++.      +++.|+++....+..++++++.+| +..   +.+.+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            45689999999999999999874 3  79999999997      999999998877766789999998 432   23567


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------------CCCCCcccCH
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------------VGGPPYKVSV  229 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------------------~~~~~~~~~~  229 (274)
                      +||+|++..+++++++..  .+++.+..+++|||++++.++.....                        .......++.
T Consensus       122 ~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  199 (275)
T 3bkx_A          122 HFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITP  199 (275)
T ss_dssp             CCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCH
T ss_pred             CEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCH
Confidence            899999999999997543  46777777778899999987655322                        1112234689


Q ss_pred             HHHHHHHhcCCCcEEEEeec
Q 024021          230 SDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +++.++++++||+++.....
T Consensus       200 ~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          200 DTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             HHHHHHHHHHTCEEEECCCB
T ss_pred             HHHHHHHHHCCCeeEEEEEe
Confidence            99999999999999998876

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.74  E-value=2.1e-17  Score=145.43  Aligned_cols=139  Identities=20%  Similarity=0.274  Sum_probs=110.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC-----C--CCcceEEEEcccCC-------CC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL-----P--NAKFVSFLKADFFT-------WC  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~-----~--~~~~~~~~~~d~~~-------~~  170 (274)
                      ++.+|||+|||+|.++..+++   ++.+|+|+|+++.+++.|+++....     +  ...+++|+.+|+.+       ..
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            567999999999999998876   5679999999999999999987532     1  12579999999987       34


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------CCCCcccCHHHHHHHHhc
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------GGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~  238 (274)
                      +.++||+|+++.+++++++  ...+++++.++|+|||++++.+.......            ......++.+++.+++++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  240 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE  240 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred             CCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence            5678999999999999864  46899999999999999999775443210            011123467999999999


Q ss_pred             CCCcEEEEee
Q 024021          239 MGFQAISIVD  248 (274)
Q Consensus       239 ~Gf~~~~~~~  248 (274)
                      +||..+++..
T Consensus       241 aGF~~v~~~~  250 (383)
T 4fsd_A          241 AGFRDVRLVS  250 (383)
T ss_dssp             TTCCCEEEEE
T ss_pred             CCCceEEEEe
Confidence            9999887655

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.74  E-value=1.8e-17  Score=133.15  Aligned_cols=127  Identities=19%  Similarity=0.167  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.|+++....+..+ +++..+|+.+.. .++||+|+++.++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~  135 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DGKFDLIVANILA  135 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CCCceEEEECCcH
Confidence            34568999999999999999888655 99999999999999999988776544 999999998754 4789999998776


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++     ...+++.+.++|+|||++++..+...          +.+++.++++++||+++.....
T Consensus       136 ~~-----~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~~~~~Gf~~~~~~~~  185 (205)
T 3grz_A          136 EI-----LLDLIPQLDSHLNEDGQVIFSGIDYL----------QLPKIEQALAENSFQIDLKMRA  185 (205)
T ss_dssp             HH-----HHHHGGGSGGGEEEEEEEEEEEEEGG----------GHHHHHHHHHHTTEEEEEEEEE
T ss_pred             HH-----HHHHHHHHHHhcCCCCEEEEEecCcc----------cHHHHHHHHHHcCCceEEeecc
Confidence            54     36788999999999999999764432          5789999999999999887653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.73  E-value=3.9e-17  Score=127.58  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=102.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+ +|+|+|+++.+++.          .++++++.+|+.+..+.++||+|+++.++..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            556799999999999999999988 99999999999987          1568999999988666689999999988875


Q ss_pred             cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          187 IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       187 ~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      .++.       ....++.++.+.+ |||.+++.....          ...+++.++++++||..+.+......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------~~~~~l~~~l~~~gf~~~~~~~~~~~  152 (170)
T 3q87_B           91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------NRPKEVLARLEERGYGTRILKVRKIL  152 (170)
T ss_dssp             TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------GCHHHHHHHHHHTTCEEEEEEEEECS
T ss_pred             CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------CCHHHHHHHHHHCCCcEEEEEeeccC
Confidence            4322       2345778888888 999999877433          26789999999999999888775543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.73  E-value=1.4e-16  Score=129.65  Aligned_cols=137  Identities=17%  Similarity=0.118  Sum_probs=110.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.        .++..+|+.+   ..+.++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            45689999999999999999887889999999999999998765        3678888875   234578999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++++++.  ..+++.+.++|+|||.+++........                   .......++.+++.++++++||+++
T Consensus       103 l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  180 (230)
T 3cc8_A          103 LEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSIS  180 (230)
T ss_dssp             GGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEE
T ss_pred             hhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEE
Confidence            9998644  588999999999999999976542210                   0111234689999999999999999


Q ss_pred             EEeeccccc
Q 024021          245 SIVDNKLAI  253 (274)
Q Consensus       245 ~~~~~~~~~  253 (274)
                      .+.......
T Consensus       181 ~~~~~~~~~  189 (230)
T 3cc8_A          181 KVDRVYVDH  189 (230)
T ss_dssp             EEEEEECCC
T ss_pred             EEEecccCh
Confidence            988866554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.73  E-value=5e-17  Score=141.82  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=116.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|..+..+++  ++.+++++|+ +.+++.|+++....+..++++++.+|+.+..+. .||+|++..++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~v~~~~vl  259 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KADAIILSFVL  259 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEEEEEEESCG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-CccEEEEcccc
Confidence            3457999999999999998887  4679999999 999999999988777667899999999874443 49999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++++++....+++++.++|+|||++++.++. ..+....              .....+.+++.++++++||+++++...
T Consensus       260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  339 (360)
T 1tw3_A          260 LNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQL  339 (360)
T ss_dssp             GGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeC
Confidence            9998877778999999999999999998866 3221100              012248899999999999999988765


Q ss_pred             c
Q 024021          250 K  250 (274)
Q Consensus       250 ~  250 (274)
                      .
T Consensus       340 ~  340 (360)
T 1tw3_A          340 P  340 (360)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=2.7e-18  Score=141.26  Aligned_cols=157  Identities=18%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCC
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~  171 (274)
                      +.+..+......++.+|||||||+|..+..+++. +.++++||+++.+++.|+++....+  .+++++.+|...   ..+
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~  125 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc
Confidence            3444444444567789999999999999999874 4589999999999999999987765  568889888765   456


Q ss_pred             CCCeeEEEecccccc---cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc----ccCHHHHHHHHhcCCCcEE
Q 024021          172 TELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY----KVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~Gf~~~  244 (274)
                      .++||.|+...+...   .+..+...+++++.++|||||++++.+...........+    ....+.+...|.++||+++
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~eaGF~~~  205 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRE  205 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHHTCCGG
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHHHHHHHcCCeEE
Confidence            678999986433221   122456789999999999999988754221111001111    1234566677888999976


Q ss_pred             EEeecccccC
Q 024021          245 SIVDNKLAIG  254 (274)
Q Consensus       245 ~~~~~~~~~~  254 (274)
                      .+........
T Consensus       206 ~i~~~~~~l~  215 (236)
T 3orh_A          206 NIRTEVMALV  215 (236)
T ss_dssp             GEEEEEEECC
T ss_pred             EEEEEeeccC
Confidence            6655444443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.72  E-value=2e-16  Score=131.07  Aligned_cols=115  Identities=23%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      .+..++.... .++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|+++....+.  +++++.+|+.+....++|
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCc
Confidence            3455555433 3557999999999999999998899999999999999999999876653  699999999886556789


Q ss_pred             eEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|++. ..+.+++.+....+++.+.++|+|||.+++..
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            999987 45566676778899999999999999988743

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.72  E-value=7.1e-17  Score=140.29  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..+++  ++.+++++|+ +.++.  +.+....+..++++++.+|++...+  +||+|++..+++
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D~v~~~~vlh  258 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HADVHVLKRILH  258 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCcEEEEehhcc
Confidence            346999999999999999987  6678999999 55554  3333333445689999999986554  899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--------------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--------------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++++....++++++++|+|||++++.+....+....              .....+.+++.++++++||+++++..
T Consensus       259 ~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  335 (348)
T 3lst_A          259 NWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG  335 (348)
T ss_dssp             GSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence            9998877899999999999999999988654432110              01124789999999999999999876

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.72  E-value=7.8e-17  Score=137.07  Aligned_cols=142  Identities=19%  Similarity=0.187  Sum_probs=108.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhh---CCCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCC-CCCC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~---~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~~~  172 (274)
                      ...+......++.+|||+|||+|..+..++   ..+.+|+|+|+++.+++.|+++.... +...+++++.+|+.+ ..+.
T Consensus        26 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  105 (299)
T 3g5t_A           26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG  105 (299)
T ss_dssp             HHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc
Confidence            333333334567899999999999999999   67889999999999999999998765 344689999999988 3333


Q ss_pred             ------CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---C-C--------------CCCCCcc-c
Q 024021          173 ------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---D-H--------------VGGPPYK-V  227 (274)
Q Consensus       173 ------~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---~-~--------------~~~~~~~-~  227 (274)
                            ++||+|++..+++++   +...+++++.++|+|||.+++..+...   . .              ..++.+. .
T Consensus       106 ~~~~~~~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p  182 (299)
T 3g5t_A          106 ADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQP  182 (299)
T ss_dssp             TTTTTSSCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTT
T ss_pred             cccccCCCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhch
Confidence                  689999999999998   346889999999999999988554321   1 0              0111111 3


Q ss_pred             CHHHHHHHHhcCCCc
Q 024021          228 SVSDYEEVLQPMGFQ  242 (274)
Q Consensus       228 ~~~~~~~~l~~~Gf~  242 (274)
                      ..+.+.++++..||.
T Consensus       183 ~~~~~~~~l~~~gfp  197 (299)
T 3g5t_A          183 GRSRLRNMLKDSHLD  197 (299)
T ss_dssp             HHHHHHTTTTTCCCC
T ss_pred             hhHHHHHhhhccCCC
Confidence            456789999999993

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.72  E-value=1.3e-16  Score=130.48  Aligned_cols=136  Identities=16%  Similarity=0.082  Sum_probs=106.9

Q ss_pred             HhcCCCCCCeEEEEcCC-cchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeE
Q 024021          102 HQSGALPKGRALVPGCG-TGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDL  177 (274)
Q Consensus       102 ~~~~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~  177 (274)
                      +.....++.+|||+||| +|..+..+++. +.+|+|+|+++.+++.|+++....+.  +++++.+|+..  ..+.++||+
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEE
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeE
Confidence            34444567899999999 99999999886 78999999999999999999988765  79999999643  344578999


Q ss_pred             EEecccccccCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          178 IFDYTFFCAIEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       178 v~~~~~~~~~~~-----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      |+++.++...+.                 .....+++.+.++|+|||++++......         ...+++.++++++|
T Consensus       127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------~~~~~~~~~l~~~g  197 (230)
T 3evz_A          127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------KLLNVIKERGIKLG  197 (230)
T ss_dssp             EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------HHHHHHHHHHHHTT
T ss_pred             EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------hHHHHHHHHHHHcC
Confidence            999987765432                 1236789999999999999998653211         24678999999999


Q ss_pred             CcEEEEee
Q 024021          241 FQAISIVD  248 (274)
Q Consensus       241 f~~~~~~~  248 (274)
                      |.+..+..
T Consensus       198 ~~~~~~~~  205 (230)
T 3evz_A          198 YSVKDIKF  205 (230)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEe
Confidence            98776644

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.72  E-value=4.4e-17  Score=138.72  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=105.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCC---------CCCC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFT---------WCPT  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~---------~~~~  172 (274)
                      ++.+|||+|||+|..+..++. .+.+|+|+|+|+.+++.|+++....+...     +++|...|+..         ..+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            357999999999987765554 45799999999999999999876543211     26788887732         2345


Q ss_pred             CCeeEEEeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-------------------C-------------
Q 024021          173 ELFDLIFDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISD-------------------H-------------  219 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~-------------------~-------------  219 (274)
                      ++||+|+|..+++++ +.+....+++.+.++|+|||++++.+.....                   .             
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI  207 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence            789999999999875 3334578999999999999999986653110                   0             


Q ss_pred             ----CCC-----CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          220 ----VGG-----PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       220 ----~~~-----~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                          ..+     +.+..+++++.++++++||+++......
T Consensus       208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~  247 (302)
T 2vdw_A          208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFA  247 (302)
T ss_dssp             EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHH
T ss_pred             ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChH
Confidence                000     1124567999999999999999987654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.71  E-value=1e-17  Score=137.75  Aligned_cols=136  Identities=17%  Similarity=0.091  Sum_probs=100.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEe-
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD-  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~-  180 (274)
                      ..++.+|||+|||+|..+..+++.+. +|+++|+++.+++.|+++....+  .+++++.+|+.+.   .++++||+|++ 
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            34568999999999999999988554 89999999999999999987665  5799999998763   45678999999 


Q ss_pred             cccc--cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc----ccCHHHHHHHHhcCCCcE
Q 024021          181 YTFF--CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY----KVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~--~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~Gf~~  243 (274)
                      ...+  ...+......+++++.++|||||++++.++..........+    ....+.....+.++||..
T Consensus       136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred             CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence            4443  22333455678999999999999999876442111000011    112355567788999985

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=2.1e-16  Score=126.91  Aligned_cols=128  Identities=12%  Similarity=-0.006  Sum_probs=103.4

Q ss_pred             HHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024021           99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL  174 (274)
Q Consensus        99 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~  174 (274)
                      ..++... ..++.+|||+|||+|..+..+++.+  .+++++|+++.+++.|+++....+. ++++++.+|+.+.. ..++
T Consensus        30 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           30 AVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcCCC
Confidence            3334433 3456799999999999999998844  7999999999999999999877665 67999999997743 3367


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      ||+|++..+++     ....+++.+.++|+|||++++.....          .+.+++.++++++||.
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~l~~~g~~  161 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL----------DTLTKAVEFLEDHGYM  161 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH----------HHHHHHHHHHHHTTCE
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc----------ccHHHHHHHHHHCCCc
Confidence            99999988765     23578999999999999999976432          1578899999999993

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.71  E-value=1.1e-16  Score=125.39  Aligned_cols=125  Identities=15%  Similarity=0.037  Sum_probs=103.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++....+...++ ++.+|..+..+.  ++||+|++..
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            45579999999999999999884  679999999999999999999887766578 888888764433  7899999998


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++++      ..+++.+.++|+|||.+++......          +...+.++++..|+.+..+..
T Consensus       103 ~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A          103 GLTA------PGVFAAAWKRLPVGGRLVANAVTVE----------SEQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             -TTC------TTHHHHHHHTCCTTCEEEEEECSHH----------HHHHHHHHHHHHCCEEEEEEE
T ss_pred             cccH------HHHHHHHHHhcCCCCEEEEEeeccc----------cHHHHHHHHHHcCCeeEEEEe
Confidence            8876      3578999999999999998774332          567888999999988877644

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.71  E-value=4.3e-17  Score=135.53  Aligned_cols=132  Identities=19%  Similarity=0.246  Sum_probs=108.1

Q ss_pred             HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEE
Q 024021          100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  179 (274)
                      +.+.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++...++..  +++..+|+.+..+.++||+|+
T Consensus       112 ~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv  189 (254)
T 2nxc_A          112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLV  189 (254)
T ss_dssp             HHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEE
T ss_pred             HHHHHhcCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEE
Confidence            333333456789999999999999999888889999999999999999998877653  899999987754457899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++...+     ....++..+.++|+|||++++......          ..+++.+.++++||.++....
T Consensus       190 ~n~~~~-----~~~~~l~~~~~~LkpgG~lils~~~~~----------~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          190 ANLYAE-----LHAALAPRYREALVPGGRALLTGILKD----------RAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             EECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG----------GHHHHHHHHHHTTCEEEEEEE
T ss_pred             ECCcHH-----HHHHHHHHHHHHcCCCCEEEEEeeccC----------CHHHHHHHHHHCCCEEEEEec
Confidence            876543     346788999999999999998764332          578999999999999988765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.71  E-value=1.5e-16  Score=129.18  Aligned_cols=128  Identities=22%  Similarity=0.256  Sum_probs=105.0

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~  187 (274)
                      +.+|||+|||+|.++..++..    +++|+++.+++.++++        +++++.+|+.+. .+.++||+|++..+++++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhhc
Confidence            789999999999999998776    9999999999999887        378999998773 445689999999999998


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++  ...+++.+.++|+|||.+++........             .......++.+++.++++++||+++.+....
T Consensus       116 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~  189 (219)
T 1vlm_A          116 DD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL  189 (219)
T ss_dssp             SC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             cC--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence            53  3678999999999999999987654211             0111233689999999999999998887643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.71  E-value=2.1e-16  Score=131.69  Aligned_cols=132  Identities=15%  Similarity=0.151  Sum_probs=108.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+++.+++.|++++..+++.++++++.+|+.+..   +.++||+|+++.+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP  128 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP  128 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence            578999999999999999988655 999999999999999999998888778999999998843   3678999999877


Q ss_pred             cccc------C------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          184 FCAI------E------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       184 ~~~~------~------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +...      .            ......+++.+.++|+|||+++++....           ...++.+.++++||....
T Consensus       129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~l~~~~~~~~~  197 (259)
T 3lpm_A          129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE-----------RLLDIIDIMRKYRLEPKR  197 (259)
T ss_dssp             C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT-----------THHHHHHHHHHTTEEEEE
T ss_pred             CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH-----------HHHHHHHHHHHCCCceEE
Confidence            6433      0            0234678999999999999999965222           578899999999999888


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       198 ~~~v~  202 (259)
T 3lpm_A          198 IQFVH  202 (259)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            76643

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.70  E-value=1.4e-16  Score=133.98  Aligned_cols=139  Identities=16%  Similarity=0.168  Sum_probs=109.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      .+..++.....++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+..+.++
T Consensus        98 l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~  176 (276)
T 2b3t_A           98 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAGQQ  176 (276)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTTCC
T ss_pred             HHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcccCC
Confidence            34444444334567999999999999999885  5779999999999999999998776553 69999999988655678


Q ss_pred             eeEEEecccccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHH
Q 024021          175 FDLIFDYTFFCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSD  231 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~  231 (274)
                      ||+|+++.++.....                       .....+++.+.++|+|||++++...           ....++
T Consensus       177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------~~~~~~  245 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------WQQGEA  245 (276)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------SSCHHH
T ss_pred             ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------chHHHH
Confidence            999999865543211                       3456788999999999999988641           125789


Q ss_pred             HHHHHhcCCCcEEEEe
Q 024021          232 YEEVLQPMGFQAISIV  247 (274)
Q Consensus       232 ~~~~l~~~Gf~~~~~~  247 (274)
                      +.++++++||..+.+.
T Consensus       246 ~~~~l~~~Gf~~v~~~  261 (276)
T 2b3t_A          246 VRQAFILAGYHDVETC  261 (276)
T ss_dssp             HHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHCCCcEEEEE
Confidence            9999999999876554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.70  E-value=5.1e-16  Score=125.13  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCee
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D  176 (274)
                      ..++.....++.+|||+|||+|..+..+   +. +++++|+++.+++.++++.      .+++++.+|+.+. .+.++||
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD   97 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFD   97 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEE
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEE
Confidence            3445544446789999999999999888   66 9999999999999999987      4588999999873 4567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------CCC----CCcccCHHHHHHHHhcCC
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------VGG----PPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~l~~~G  240 (274)
                      +|++..+++++++  ...+++++.++|+|||.+++..+.....          ...    ....++.+++.++++  |
T Consensus        98 ~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A           98 VVLLFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             EEEEESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             EEEEcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            9999999999863  4688999999999999999988655321          011    123369999999999  7

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=1.5e-16  Score=126.99  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             HHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCC
Q 024021          100 HLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTEL  174 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~  174 (274)
                      .++.....++.+|||+|||+|..+..+++   +..+++++|+++.+++.|+++....+..++++++.+|+.+.  ...++
T Consensus        14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~   93 (197)
T 3eey_A           14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP   93 (197)
T ss_dssp             HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSC
T ss_pred             HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCC
Confidence            33333345678999999999999998877   34699999999999999999998877667899999998773  45578


Q ss_pred             eeEEEecccccc-------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH---hcCCCcEE
Q 024021          175 FDLIFDYTFFCA-------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL---QPMGFQAI  244 (274)
Q Consensus       175 ~D~v~~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~Gf~~~  244 (274)
                      ||+|+++..+..       ........+++.+.++|+|||++++..+.....  +   ....+.+.+++   ...+|.+.
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~---~~~~~~~~~~~~~l~~~~~~v~  168 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDT--G---FEEKEKVLEFLKGVDQKKFIVQ  168 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTT--B---SHHHHHHHHHHTTSCTTTEEEE
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCC--c---HHHHHHHHHHHHhCCCCcEEEE
Confidence            999998875511       122345579999999999999999988654321  1   11233344444   45678887


Q ss_pred             EEeeccc
Q 024021          245 SIVDNKL  251 (274)
Q Consensus       245 ~~~~~~~  251 (274)
                      .......
T Consensus       169 ~~~~~~~  175 (197)
T 3eey_A          169 RTDFINQ  175 (197)
T ss_dssp             EEEETTC
T ss_pred             EEEeccC
Confidence            7766543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.70  E-value=1.3e-16  Score=129.04  Aligned_cols=131  Identities=14%  Similarity=0.035  Sum_probs=102.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++  ++.+++|+|+++.+++.|+++....+. .+++++.+|+.+.   .+.++||+|+++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            3467999999999999998887  467999999999999999999877665 5799999999873   456789999988


Q ss_pred             ccccccChh------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          182 TFFCAIEPE------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ....+....      ....+++.+.++|+|||.+++.+...          ...+++.+.++++||..+.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR----------GLFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH----------HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH----------HHHHHHHHHHHHCCCeeeeccc
Confidence            654322110      12468999999999999998876211          0236778889999999887764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.70  E-value=4.9e-16  Score=123.06  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=108.1

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCCCC
Q 024021           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~  173 (274)
                      .....++.... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++....+..+ +++++.+|+.+..+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            34444554443 356799999999999999998888899999999999999999987766543 4999999998866677


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +||+|+++.++++ ..+....+++.+.++|+|||.+++......          ...++.+.+++. |..++
T Consensus       119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~l~~~-~~~~~  178 (194)
T 1dus_A          119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------GAKSLAKYMKDV-FGNVE  178 (194)
T ss_dssp             CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------HHHHHHHHHHHH-HSCCE
T ss_pred             CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC----------ChHHHHHHHHHH-hcceE
Confidence            8999999888765 235667899999999999999999875432          345577777776 44333

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.69  E-value=2.1e-16  Score=124.95  Aligned_cols=126  Identities=21%  Similarity=0.170  Sum_probs=104.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+...++++..+|+.+..+. ++||+|++..++
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            3456899999999999999999877999999999999999999988776656899999998773333 589999998876


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +++     ..+++.+.++|+|||.+++.....          .+..++.+.++++||.+...
T Consensus       111 ~~~-----~~~l~~~~~~l~~gG~l~~~~~~~----------~~~~~~~~~l~~~g~~~~~~  157 (192)
T 1l3i_A          111 GEL-----QEILRIIKDKLKPGGRIIVTAILL----------ETKFEAMECLRDLGFDVNIT  157 (192)
T ss_dssp             TCH-----HHHHHHHHHTEEEEEEEEEEECBH----------HHHHHHHHHHHHTTCCCEEE
T ss_pred             HHH-----HHHHHHHHHhcCCCcEEEEEecCc----------chHHHHHHHHHHCCCceEEE
Confidence            543     578899999999999999877432          15678899999999955443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.69  E-value=5.4e-16  Score=135.68  Aligned_cols=132  Identities=16%  Similarity=0.203  Sum_probs=108.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      ..+|||+|||+|..+..+++  ++.+++++|+ +.+++.+++.       ++++++.+|++++.+..  |+|++..++++
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~~--D~v~~~~vlh~  273 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPKG--DAIFIKWICHD  273 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCCC--CEEEEechhhc
Confidence            47999999999999999987  6789999999 8888766532       57999999998855533  99999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------------CCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------------PPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ++++....++++++++|+|||++++.+....+....                   .....+.+++.++++++||+.+++.
T Consensus       274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~  353 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA  353 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence            998888899999999999999999988765432211                   1122478999999999999999987


Q ss_pred             ecc
Q 024021          248 DNK  250 (274)
Q Consensus       248 ~~~  250 (274)
                      ...
T Consensus       354 ~~~  356 (368)
T 3reo_A          354 SCA  356 (368)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            643

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.68  E-value=5.7e-16  Score=124.47  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||+|..+..++.  ++.+++++|+++.+++.++++....+.. ++++..+|+.+..+.++||+|+++.+ .
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~D~i~~~~~-~  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPSEPPFDGVISRAF-A  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCCCSCEEEEECSCS-S
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCCccCCcCEEEEecc-C
Confidence            468999999999999998886  4779999999999999999998877654 49999999988666678999998653 2


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                           ....+++.+.++|+|||.+++....           ...+++.++++  ||..+.+....
T Consensus       143 -----~~~~~l~~~~~~L~~gG~l~~~~~~-----------~~~~~~~~~~~--g~~~~~~~~~~  189 (207)
T 1jsx_A          143 -----SLNDMVSWCHHLPGEQGRFYALKGQ-----------MPEDEIALLPE--EYQVESVVKLQ  189 (207)
T ss_dssp             -----SHHHHHHHHTTSEEEEEEEEEEESS-----------CCHHHHHTSCT--TEEEEEEEEEE
T ss_pred             -----CHHHHHHHHHHhcCCCcEEEEEeCC-----------CchHHHHHHhc--CCceeeeeeec
Confidence                 2357899999999999999987521           14677777766  99988766543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.68  E-value=2.4e-16  Score=129.84  Aligned_cols=130  Identities=16%  Similarity=0.183  Sum_probs=102.6

Q ss_pred             CCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~  181 (274)
                      ++.+|||+|||+|..+..++  .++.+|+++|+++.+++.|+++....+.. +++++.+|+.+...    .++||+|++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence            46799999999999999888  57889999999999999999998776653 59999999877331    4689999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA  252 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~  252 (274)
                      .+      .....+++.+.++|+|||.+++...        .......+++.+.++..||.++.+.....+
T Consensus       149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g--------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  205 (240)
T 1xdz_A          149 AV------ARLSVLSELCLPLVKKNGLFVALKA--------ASAEEELNAGKKAITTLGGELENIHSFKLP  205 (240)
T ss_dssp             CC------SCHHHHHHHHGGGEEEEEEEEEEEC--------C-CHHHHHHHHHHHHHTTEEEEEEEEEECT
T ss_pred             cc------CCHHHHHHHHHHhcCCCCEEEEEeC--------CCchHHHHHHHHHHHHcCCeEeEEEEEecC
Confidence            63      1246789999999999999988641        111123456778899999999887765433

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.68  E-value=6.2e-16  Score=125.83  Aligned_cols=136  Identities=16%  Similarity=0.134  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v  178 (274)
                      ..|+.+|||+|||+|.++..+++   +..+|+++|+++++++.++++....   .++..+.+|...    ....+.+|+|
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccceEEEE
Confidence            45678999999999999999987   5679999999999999999988665   478999998876    2345789999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++...  +.  ++...++.++.+.|||||++++...........++.. ...+..+.|+++||++++....
T Consensus       152 f~d~~--~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~-~~~~ev~~L~~~GF~l~e~i~L  217 (233)
T 4df3_A          152 YADVA--QP--EQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSE-VYKREIKTLMDGGLEIKDVVHL  217 (233)
T ss_dssp             EECCC--CT--THHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCH-HHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEecc--CC--hhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHH-HHHHHHHHHHHCCCEEEEEEcc
Confidence            86433  22  3456789999999999999998753332111111111 2345567788999999887663

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.68  E-value=4.3e-16  Score=132.05  Aligned_cols=138  Identities=17%  Similarity=0.177  Sum_probs=99.8

Q ss_pred             CCCeEEEEcCCcchhHHHh----hC--CCCeE--EEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccCCC-------C
Q 024021          108 PKGRALVPGCGTGYDVVAM----AS--PERYV--VGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFFTW-------C  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l----~~--~~~~v--~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~~~d~~~~-------~  170 (274)
                      ++.+|||||||+|..+..+    +.  ++..+  +++|+|++|++.|+++........++.+  ..++..+.       .
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            4579999999999765433    22  45544  9999999999999998764321234444  45554432       2


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CC--CCCcccCHHHHHHHHh
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VG--GPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~l~  237 (274)
                      ++++||+|++..+++++++  ...++++++++|||||++++........           ..  .....++.+++.++|+
T Consensus       132 ~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  209 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  209 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHH
T ss_pred             CCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHH
Confidence            4678999999999999964  3678999999999999999876543210           00  1123468999999999


Q ss_pred             cCCCcEEEEe
Q 024021          238 PMGFQAISIV  247 (274)
Q Consensus       238 ~~Gf~~~~~~  247 (274)
                      ++||+++...
T Consensus       210 ~aGf~~~~~~  219 (292)
T 2aot_A          210 NLGLKYECYD  219 (292)
T ss_dssp             HHTCCEEEEE
T ss_pred             HCCCceEEEE
Confidence            9999987743

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.68  E-value=1.6e-16  Score=133.23  Aligned_cols=103  Identities=15%  Similarity=0.089  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..++.+|||+|||+|..+ ..+++ .+++|+|+|+++++++.|++++...+. ++++|+.+|+.+.. +++||+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEECCC
Confidence            356789999999998765 44555 788999999999999999999987777 78999999998854 678999997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                         .  +....+++++.++|+|||++++....
T Consensus       198 ---~--~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          198 ---A--EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ---C--SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ---c--cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence               2  23467899999999999999987743

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.67  E-value=5.6e-16  Score=132.60  Aligned_cols=144  Identities=17%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCC-------CC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWC-------PT  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~-------~~  172 (274)
                      .++.+|||+|||+|..+..+++ .+.+++++|+++.+++.|+++....+      ...+++++.+|+.+..       +.
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            3567999999999999998886 46699999999999999999875421      1246999999998743       23


Q ss_pred             CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------CC--------C-C-----
Q 024021          173 ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------DH--------V-G-----  221 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------------~~--------~-~-----  221 (274)
                      ++||+|++..+++++  +.+....++.++.++|+|||.+++..+...               ..        . .     
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  192 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG  192 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence            589999999999887  445677999999999999999998775321               00        0 0     


Q ss_pred             ------------CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          222 ------------GPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       222 ------------~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                                  .+.+..+.+++.+++++.||+++......
T Consensus       193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~  233 (313)
T 3bgv_A          193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL  233 (313)
T ss_dssp             CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred             ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence                        00122567899999999999999886533

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.67  E-value=8.4e-16  Score=134.26  Aligned_cols=133  Identities=17%  Similarity=0.210  Sum_probs=108.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||||||+|..+..+++  ++.+++++|+ +.+++.|++.       ++++|+.+|++++.+..  |+|++..+++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~~--D~v~~~~vlh  270 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPSG--DTILMKWILH  270 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCCC--SEEEEESCGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCCC--CEEEehHHhc
Confidence            347999999999999999987  6789999999 8887766532       57999999998855443  9999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-------------------CCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-------------------PPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +++++....++++++++|+|||++++.+....+....                   .....+.+++.++++++||+.+++
T Consensus       271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~  350 (364)
T 3p9c_A          271 DWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKS  350 (364)
T ss_dssp             GSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEE
Confidence            9998888899999999999999999988765432111                   111246899999999999999998


Q ss_pred             eecc
Q 024021          247 VDNK  250 (274)
Q Consensus       247 ~~~~  250 (274)
                      ....
T Consensus       351 ~~~~  354 (364)
T 3p9c_A          351 TYIY  354 (364)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            7643

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.67  E-value=7.6e-16  Score=129.33  Aligned_cols=132  Identities=15%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             CCeEEEEcCCc---chhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------------CC
Q 024021          109 KGRALVPGCGT---GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------------CP  171 (274)
Q Consensus       109 ~~~vLDiG~G~---G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------------~~  171 (274)
                      ..+|||+|||+   |..+..+.+  ++.+|+++|+|+.+++.|+++....   ++++++.+|+.+.            .+
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCCCchhhhccchhhccCC
Confidence            37999999999   988766654  6789999999999999999988543   5799999999762            22


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcC
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~  239 (274)
                      ..+||+|++..++++++++....+++++.++|+|||++++.++.....            ...+....+.+++.+++  .
T Consensus       155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--~  232 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--G  232 (274)
T ss_dssp             TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT--T
T ss_pred             CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh--C
Confidence            357999999999999987667889999999999999999988765310            01123345899999999  4


Q ss_pred             CCcEEE
Q 024021          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      ||+++.
T Consensus       233 G~~l~~  238 (274)
T 2qe6_A          233 DFELVE  238 (274)
T ss_dssp             TCEECT
T ss_pred             CCeEcc
Confidence            898765

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.67  E-value=4.1e-16  Score=131.30  Aligned_cols=131  Identities=12%  Similarity=0.034  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++...++..++++++.+|+.+..+.++||+|++....
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~  202 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence            34578999999999999999998666 69999999999999999998888777799999999996667889999986553


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ..      ..++..+.++|+|||.+++.++......    .....+++.+.++++||.+..+
T Consensus       203 ~~------~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          203 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLM----PREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGT----TTTTHHHHHHHHHHTTCEEEEE
T ss_pred             hH------HHHHHHHHHHCCCCeEEEEEEeeccccc----cccHHHHHHHHHHHcCCeeEEe
Confidence            32      3577899999999999999876542111    1125688899999999998764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.67  E-value=2.4e-16  Score=123.00  Aligned_cols=136  Identities=12%  Similarity=0.015  Sum_probs=100.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..++.  ++.+|+++|+++.+++.+++++...+...++++  .|.....++++||+|++..++
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            4468999999999999999976  577999999999999999999988876556666  666655667889999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccC-CCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI-SDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +++  ++.+..+.++.+.|+|||+++...-.. .....+ ....-...+.+.+.+-++.+.+.+
T Consensus       126 HlL--~~~~~al~~v~~~L~pggvfISfptksl~Gr~~g-m~~~Y~~~~~~~~~~~~~~~~~~~  186 (200)
T 3fzg_A          126 PVL--KQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKG-MEENYQLWFESFTKGWIKILDSKV  186 (200)
T ss_dssp             HHH--HHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTT-CCCCHHHHHHHHTTTTSCEEEEEE
T ss_pred             Hhh--hhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcc-hhhhHHHHHHHhccCcceeeeeee
Confidence            999  445566779999999999887765111 111111 111235677777766555544433

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=5.2e-16  Score=121.83  Aligned_cols=123  Identities=12%  Similarity=0.091  Sum_probs=102.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+. .+++++.+|+.+..+.++||+|++..+ . 
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~i~~~~~-~-  110 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVLDKLEFNKAFIGGT-K-  110 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHGGGCCCSEEEECSC-S-
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccccCCCCcEEEECCc-c-
Confidence            4567999999999999999999888999999999999999999887765 569999999987555578999999888 2 


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                          ....+++.+.++  |||.+++......          ...++.+.++++||.+..+..
T Consensus       111 ----~~~~~l~~~~~~--~gG~l~~~~~~~~----------~~~~~~~~l~~~g~~~~~~~~  156 (183)
T 2yxd_A          111 ----NIEKIIEILDKK--KINHIVANTIVLE----------NAAKIINEFESRGYNVDAVNV  156 (183)
T ss_dssp             ----CHHHHHHHHHHT--TCCEEEEEESCHH----------HHHHHHHHHHHTTCEEEEEEE
T ss_pred             ----cHHHHHHHHhhC--CCCEEEEEecccc----------cHHHHHHHHHHcCCeEEEEEe
Confidence                235678888888  9999999874332          467899999999988776644

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.67  E-value=3.2e-16  Score=127.95  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=104.1

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCC-
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCP-  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~-  171 (274)
                      ...+..++.....++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++.      ++++++.+|+.+  +.+ 
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  108 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGL  108 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcC
Confidence            34455555443456789999999999999999998889999999999999999983      469999999965  233 


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .++||+|+++.-        ...++.++.++|+|||.++....           ..+.+++.+.++++||..+.+.....
T Consensus       109 ~~~fD~v~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~-----------~~~~~~~~~~l~~~Gf~~~~~~~~~~  169 (226)
T 3m33_A          109 GAPFGLIVSRRG--------PTSVILRLPELAAPDAHFLYVGP-----------RLNVPEVPERLAAVGWDIVAEDHVSV  169 (226)
T ss_dssp             CCCEEEEEEESC--------CSGGGGGHHHHEEEEEEEEEEES-----------SSCCTHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CCCEEEEEeCCC--------HHHHHHHHHHHcCCCcEEEEeCC-----------cCCHHHHHHHHHHCCCeEEEEEeeee
Confidence            578999998721        13567899999999999982211           12567899999999999988776544


Q ss_pred             c
Q 024021          252 A  252 (274)
Q Consensus       252 ~  252 (274)
                      .
T Consensus       170 ~  170 (226)
T 3m33_A          170 L  170 (226)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.67  E-value=1.9e-15  Score=140.69  Aligned_cols=159  Identities=10%  Similarity=0.127  Sum_probs=115.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhc------CCCCcceEEEEcccCCC-CCCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSS------LPNAKFVSFLKADFFTW-CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~-~~~~~~D  176 (274)
                      .++.+|||+|||+|.++..+++.+   .+|+|+|+++.+++.|++++..      .+. .+++|+.+|+.+. ...++||
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCee
Confidence            367899999999999999999866   7999999999999999986542      122 4799999999883 4457899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC------------------------CCCCCCcccCHHHH
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD------------------------HVGGPPYKVSVSDY  232 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~------------------------~~~~~~~~~~~~~~  232 (274)
                      +|++..+++|++++....+++.+.++|+|| .+++.+.....                        ......+.++.+++
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEF  877 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQF  877 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCSCSSCSCCBCHHHH
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccccccCcceeecHHHH
Confidence            999999999999887778999999999999 76666533211                        00112233567777


Q ss_pred             HH----HHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024021          233 EE----VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR  267 (274)
Q Consensus       233 ~~----~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (274)
                      ..    +++..||.+.-..--.......+...++++|.|
T Consensus       878 r~Wae~LAer~GYsVefvGVGDg~ep~vG~~TQiAVFtR  916 (950)
T 3htx_A          878 NQWASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRR  916 (950)
T ss_dssp             HHHHHHHHHHTTEEEEEEEESSCSSSTTCCSEEEEEEEE
T ss_pred             HHHHHHHHHhcCcEEEEEccCCCCCCCCCCccEEEEEEE
Confidence            77    677779876444332221222333456666665

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.66  E-value=1.7e-15  Score=122.63  Aligned_cols=126  Identities=13%  Similarity=-0.007  Sum_probs=105.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+..+.+ +||+|+..+
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            3456799999999999999998854  4899999999999999999999988888999999998755544 699998654


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      .-    ......+++...+.|+++|++++...            ...+.+.++|.++||.+++..
T Consensus        93 ~G----g~~i~~Il~~~~~~L~~~~~lVlq~~------------~~~~~vr~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A           93 MG----GRLIARILEEGLGKLANVERLILQPN------------NREDDLRIWLQDHGFQIVAES  141 (225)
T ss_dssp             EC----HHHHHHHHHHTGGGCTTCCEEEEEES------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             CC----hHHHHHHHHHHHHHhCCCCEEEEECC------------CCHHHHHHHHHHCCCEEEEEE
Confidence            42    24457789999999999999888552            157899999999999998754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.66  E-value=7.6e-16  Score=127.77  Aligned_cols=115  Identities=10%  Similarity=0.018  Sum_probs=88.7

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC-CCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF-TWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~  175 (274)
                      +..++.... .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|+++.....  ....+...+.. .....++|
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccccCCCc
Confidence            344444443 456799999999999999999999999999999999999999986541  12233222220 11224689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      |+|+++.++++++.+....++.++.++| |||++++....
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence            9999999999998778888999999999 99999987643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.66  E-value=2e-15  Score=122.38  Aligned_cols=136  Identities=13%  Similarity=0.003  Sum_probs=110.1

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  172 (274)
                      ...+..+... ..++.+|+|+|||+|.++..+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+...+
T Consensus         9 s~RL~~i~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A            9 SKRLQKVANY-VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             CHHHHHHHTT-SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHHHHh-CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc
Confidence            3444444433 3456799999999999999999865  389999999999999999999998888999999999985544


Q ss_pred             C-CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          173 E-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       173 ~-~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      + +||+|+..+...    +....+++...+.|+++|++++...            ...+.+++++.++||.+++..
T Consensus        88 ~~~~D~IviaGmGg----~lI~~IL~~~~~~l~~~~~lIlqp~------------~~~~~lr~~L~~~Gf~i~~E~  147 (230)
T 3lec_A           88 ADNIDTITICGMGG----RLIADILNNDIDKLQHVKTLVLQPN------------NREDDLRKWLAANDFEIVAED  147 (230)
T ss_dssp             GGCCCEEEEEEECH----HHHHHHHHHTGGGGTTCCEEEEEES------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccCEEEEeCCch----HHHHHHHHHHHHHhCcCCEEEEECC------------CChHHHHHHHHHCCCEEEEEE
Confidence            3 799988655433    4456788899999999999888652            147899999999999998755

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.65  E-value=3e-15  Score=131.15  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|+++...++.  +++++.+|+.+... .++||+|+++.+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3567999999999999999999889999999999999999999987764  38999999998544 47899999999988


Q ss_pred             c---cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH------hcCCCcEEEEeecccc
Q 024021          186 A---IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL------QPMGFQAISIVDNKLA  252 (274)
Q Consensus       186 ~---~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~Gf~~~~~~~~~~~  252 (274)
                      +   ...+....+++.+.++|+|||.++++.....      +   -...+.+.+      +..||++.........
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l------~---~~~~l~~~f~~v~~l~~~gF~Vl~a~~~~~~  376 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL------K---YEPLLEEKFGAFQTLKVAEYKVLFAEKRGRH  376 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS------C---HHHHHHHHHSCCEEEEESSSEEEEEECC---
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC------C---hHHHHHHhhccEEEEeCCCEEEEEEEEeccc
Confidence            7   3346677899999999999999999874331      1   122222322      6778888877665544

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.65  E-value=1.1e-15  Score=133.94  Aligned_cols=132  Identities=17%  Similarity=0.249  Sum_probs=106.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|++.       ++++++.+|+.+..+.  ||+|++..+++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~~--~D~v~~~~~lh  278 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFASVPQ--GDAMILKAVCH  278 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--EEEEEEESSGG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccCCCC--CCEEEEecccc
Confidence            347999999999999999987  5678999999 9888776541       4699999999884433  99999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC------------------CcccCHHHHHHHHhcCCCcEEEEe
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP------------------PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +++++....++++++++|+|||++++.++........+                  ....+.+++.++++++||+++++.
T Consensus       279 ~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  358 (372)
T 1fp1_D          279 NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA  358 (372)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence            99887777999999999999999999875433221110                  122478999999999999999887


Q ss_pred             ec
Q 024021          248 DN  249 (274)
Q Consensus       248 ~~  249 (274)
                      ..
T Consensus       359 ~~  360 (372)
T 1fp1_D          359 CR  360 (372)
T ss_dssp             EE
T ss_pred             Ec
Confidence            63

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.65  E-value=4.3e-16  Score=129.03  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=104.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~  181 (274)
                      ++.+|||+|||+|..+..++.  ++.+|+++|+++.+++.|+++....++. +++++.+|+.+...    .++||+|++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence            457999999999999988876  5789999999999999999999877664 59999999987432    4789999997


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                      .+.      ....+++.+.++|+|||++++...        ........++.+.++..||.+..+.....+.
T Consensus       159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g--------~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~  216 (249)
T 3g89_A          159 AVA------PLCVLSELLLPFLEVGGAAVAMKG--------PRVEEELAPLPPALERLGGRLGEVLALQLPL  216 (249)
T ss_dssp             SSC------CHHHHHHHHGGGEEEEEEEEEEEC--------SCCHHHHTTHHHHHHHHTEEEEEEEEEECTT
T ss_pred             CcC------CHHHHHHHHHHHcCCCeEEEEEeC--------CCcHHHHHHHHHHHHHcCCeEEEEEEeeCCC
Confidence            652      235788999999999999988662        1222235567788888999999888764443

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.65  E-value=1.2e-15  Score=124.80  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=98.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~  181 (274)
                      ++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++....   .++.++.+|+..    ....++||+|+. 
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~-  149 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIYE-  149 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEEE-
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEEE-
Confidence            4579999999999999999874 3 69999999999999999987655   579999999987    333478999993 


Q ss_pred             cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                          ++ .+.....+++.+.++|+|||++++...........++..+..+++. +++++||+.+.....
T Consensus       150 ----~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~  213 (230)
T 1fbn_A          150 ----DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDI  213 (230)
T ss_dssp             ----CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEEC
T ss_pred             ----ecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEcc
Confidence                22 2234567799999999999999987322111111111122346777 889999998887653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.65  E-value=8.5e-16  Score=133.66  Aligned_cols=131  Identities=14%  Similarity=0.174  Sum_probs=106.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.|++.       .+++++.+|+.+..+  .||+|++..+++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p--~~D~v~~~~~lh  257 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTSIP--NADAVLLKYILH  257 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCCCC--CccEEEeehhhc
Confidence            347999999999999999986  5779999999 9998877642       359999999987443  399999999999


Q ss_pred             ccChhHHHHHHHHHHhcccC---CcEEEEEEccCCCCCCC-----------------CCcccCHHHHHHHHhcCCCcEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISDHVGG-----------------PPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +++++....++++++++|+|   ||++++.++........                 .....+.+++.++++++||+.++
T Consensus       258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~  337 (352)
T 1fp2_A          258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK  337 (352)
T ss_dssp             GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence            99887777999999999999   99999987654332111                 01224789999999999999988


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       338 ~~~  340 (352)
T 1fp2_A          338 ISP  340 (352)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            866

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1.9e-15  Score=119.84  Aligned_cols=108  Identities=11%  Similarity=-0.044  Sum_probs=90.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..++..+. +|+++|+++.+++.|+++....+. ++++++.+|+.+.   .+.++||+|+++.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence            5678999999999999997777555 899999999999999999887765 6799999999873   3367899999998


Q ss_pred             cccccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024021          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~  216 (274)
                      ++++. .+....++..+.+  +|+|||.+++.....
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            87753 3456788999999  999999999977544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.64  E-value=8.5e-16  Score=124.32  Aligned_cols=130  Identities=13%  Similarity=0.047  Sum_probs=100.0

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++  ++.+++|+|+++.+++.|+++....+. .+++++.+|+.+.   .+.+.||.|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            467999999999999999887  578999999999999999999877665 4699999999872   4567899998765


Q ss_pred             cccccChh------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEPE------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ...+....      ....+++.+.++|+|||.+++.+...          ...+.+.+.++++||..+....
T Consensus       117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~----------~~~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR----------GLFEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH----------HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCccccccc
Confidence            43221110      02578999999999999999876211          0235667788888998876543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.64  E-value=3.6e-15  Score=121.84  Aligned_cols=136  Identities=11%  Similarity=-0.001  Sum_probs=108.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT  172 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  172 (274)
                      ...+..+... ..++.+|||+|||+|.++..+++.+  .+|+++|+++.+++.|++++..+++.+++++..+|..+...+
T Consensus         9 s~RL~~i~~~-v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A            9 SKRLEKVASY-ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             CHHHHHHHTT-CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG
T ss_pred             hHHHHHHHHh-CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc
Confidence            3444444443 3456799999999999999999865  389999999999999999999998888899999999986554


Q ss_pred             C-CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          173 E-LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       173 ~-~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      + +||+|+..+...    +....+++...+.|++++++++.-.            ...+.+.++|.+.||.+++..
T Consensus        88 ~~~~D~IviagmGg----~lI~~IL~~~~~~L~~~~~lIlq~~------------~~~~~lr~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A           88 KDAIDTIVIAGMGG----TLIRTILEEGAAKLAGVTKLILQPN------------IAAWQLREWSEQNNWLITSEA  147 (244)
T ss_dssp             GGCCCEEEEEEECH----HHHHHHHHHTGGGGTTCCEEEEEES------------SCHHHHHHHHHHHTEEEEEEE
T ss_pred             cccccEEEEeCCch----HHHHHHHHHHHHHhCCCCEEEEEcC------------CChHHHHHHHHHCCCEEEEEE
Confidence            4 599998644433    4556788999999999999888652            147899999999999986543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.64  E-value=3.4e-16  Score=139.19  Aligned_cols=147  Identities=17%  Similarity=0.177  Sum_probs=108.1

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCC-CCCCCC
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFT-WCPTEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~-~~~~~~  174 (274)
                      ...++.... .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.|+++.    ...... +...+... ..+.++
T Consensus        96 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~  171 (416)
T 4e2x_A           96 ARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKG----IRVRTDFFEKATADDVRRTEGP  171 (416)
T ss_dssp             HHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTT----CCEECSCCSHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcC----CCcceeeechhhHhhcccCCCC
Confidence            344444443 34579999999999999999998899999999999999998762    111111 11222222 233578


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC--------CC-CCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS--------DH-VGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ||+|++.++++|++  +...+++++.++|+|||++++......        .. .......++.+++.++++++||+++.
T Consensus       172 fD~I~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~  249 (416)
T 4e2x_A          172 ANVIYAANTLCHIP--YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVD  249 (416)
T ss_dssp             EEEEEEESCGGGCT--THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred             EEEEEECChHHhcC--CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence            99999999999996  457899999999999999998764311        00 11223346899999999999999999


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       250 ~~~~~  254 (416)
T 4e2x_A          250 VQRLP  254 (416)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            87754

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.9e-15  Score=124.85  Aligned_cols=130  Identities=18%  Similarity=0.157  Sum_probs=101.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCCC--------CCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTW--------CPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~--------~~~~  173 (274)
                      .++.+|||+|||+|.++..++.  ++.+|+++|+++.+++.|++++..   +++.++++++.+|+.+.        .+.+
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            3457999999999999998887  357999999999999999999988   77767899999999875        3467


Q ss_pred             CeeEEEecccccccC----------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024021          174 LFDLIFDYTFFCAIE----------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~----------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (274)
                      +||+|+++.++....                ......+++.+.++|+|||.+++.....           ...++.+.++
T Consensus       115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------~~~~~~~~l~  183 (260)
T 2ozv_A          115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ-----------SVAEIIAACG  183 (260)
T ss_dssp             CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG-----------GHHHHHHHHT
T ss_pred             CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH-----------HHHHHHHHHH
Confidence            899999986664321                1124678999999999999999875221           4567888888


Q ss_pred             cCCCcEEEEee
Q 024021          238 PMGFQAISIVD  248 (274)
Q Consensus       238 ~~Gf~~~~~~~  248 (274)
                      +. |..+.+..
T Consensus       184 ~~-~~~~~i~~  193 (260)
T 2ozv_A          184 SR-FGGLEITL  193 (260)
T ss_dssp             TT-EEEEEEEE
T ss_pred             hc-CCceEEEE
Confidence            75 77666544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.63  E-value=9.4e-17  Score=129.40  Aligned_cols=130  Identities=15%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-----CCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-----ELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~D~v~  179 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++....+.  +++++.+|+.+..+.     ++||+|+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~  106 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLIERAERGRPWHAIV  106 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHHHHHHTTCCBSEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhhhhhhccCcccEEE
Confidence            45679999999999999999884  66999999999999999999877654  689999999874444     7899999


Q ss_pred             ecccccccC------hhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021          180 DYTFFCAIE------PEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       180 ~~~~~~~~~------~~~------------------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      ++.++....      ...                  ...+++.+.++|+|||++++...+.          ...+++.++
T Consensus       107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~~~~~~  176 (215)
T 4dzr_A          107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------NQADEVARL  176 (215)
T ss_dssp             ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------SCHHHHHHH
T ss_pred             ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------ccHHHHHHH
Confidence            987664321      111                  1678899999999999955554332          157889999


Q ss_pred             Hh--cCCCcEEEEee
Q 024021          236 LQ--PMGFQAISIVD  248 (274)
Q Consensus       236 l~--~~Gf~~~~~~~  248 (274)
                      ++  ++||..+.+..
T Consensus       177 l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          177 FAPWRERGFRVRKVK  191 (215)
T ss_dssp             TGGGGGGTEECCEEE
T ss_pred             HHHhhcCCceEEEEE
Confidence            99  99997766544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.63  E-value=2.9e-16  Score=128.13  Aligned_cols=146  Identities=13%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCC-hHHHHHH---HHHhhcCCCCcceEEEEcccCCCCC--CCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEIS-DIAIKKA---EELSSSLPNAKFVSFLKADFFTWCP--TELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~  177 (274)
                      ..++.+|||+|||+|..+..++  .++.+|+|+|+| +.+++.|   +++....+. .++.++.+|+.....  .+.+|.
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~  100 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADS  100 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEE
Confidence            4566899999999999999998  477899999999 6666665   777666554 469999999987521  245666


Q ss_pred             EEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCC------CCCCCcc----cCHHHHHHHHhcCCCcEE
Q 024021          178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDH------VGGPPYK----VSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       178 v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~~~~~~~----~~~~~~~~~l~~~Gf~~~  244 (274)
                      |+++..+.....   .....++.++.++|||||.+++........      ..+.+..    +..+++.++++++||++.
T Consensus       101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~  180 (225)
T 3p2e_A          101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRID  180 (225)
T ss_dssp             EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEE
T ss_pred             EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCee
Confidence            665544332100   011467899999999999998833211110      0111111    112249999999999999


Q ss_pred             EEeecccc
Q 024021          245 SIVDNKLA  252 (274)
Q Consensus       245 ~~~~~~~~  252 (274)
                      ........
T Consensus       181 ~~~~~~~~  188 (225)
T 3p2e_A          181 DVKELDNE  188 (225)
T ss_dssp             EEEEECHH
T ss_pred             eeeecCHH
Confidence            98876643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.61  E-value=9e-16  Score=127.38  Aligned_cols=125  Identities=20%  Similarity=0.112  Sum_probs=103.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|++++...+..++++++.+|+.+..+.++||+|++...
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~  171 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP  171 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCC
Confidence            45679999999999999999874   779999999999999999998877766679999999998777788999997422


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEee
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG--FQAISIVD  248 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--f~~~~~~~  248 (274)
                             ....+++.+.++|+|||.+++.....          ...+++.+.++++|  |..+++..
T Consensus       172 -------~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          172 -------QPERVVEHAAKALKPGGFFVAYTPCS----------NQVMRLHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             -------CGGGGHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred             -------CHHHHHHHHHHHcCCCCEEEEEECCH----------HHHHHHHHHHHHcCCCccccEEEE
Confidence                   12457899999999999999876322          14678889999999  98877654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.61  E-value=1.3e-14  Score=122.29  Aligned_cols=135  Identities=10%  Similarity=0.061  Sum_probs=99.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeC-ChHHHHHHHHHh-----hcCCCC----cceEEEEcccCCC---C--
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEI-SDIAIKKAEELS-----SSLPNA----KFVSFLKADFFTW---C--  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~-~~~~~~~a~~~~-----~~~~~~----~~~~~~~~d~~~~---~--  170 (274)
                      .++.+|||+|||+|..+..+++.+. +|+++|+ ++.+++.|+++.     ...+..    +++++...|..+.   .  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            4567999999999999999988777 9999999 899999999998     444433    3688887665441   1  


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhccc---C--CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-Cc
Q 024021          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK---P--DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQ  242 (274)
Q Consensus       171 --~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~---p--gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~  242 (274)
                        +.++||+|++..++++.  +....+++.+.++|+   |  ||.+++......     +.......++.+.++++| |.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~-----~~~~~~~~~~~~~l~~~G~f~  230 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVTFTHHR-----PHLAERDLAFFRLVNADGALI  230 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------CTHHHHHHHHSTTEE
T ss_pred             hccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee-----cccchhHHHHHHHHHhcCCEE
Confidence              35789999998888775  445788999999999   9  998877543221     011113467778899999 99


Q ss_pred             EEEEee
Q 024021          243 AISIVD  248 (274)
Q Consensus       243 ~~~~~~  248 (274)
                      +..+..
T Consensus       231 v~~~~~  236 (281)
T 3bzb_A          231 AEPWLS  236 (281)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            988744

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=5.1e-15  Score=121.28  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++...+..++++++.+|+.+..+   .++||+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            3568999999999999999998  6789999999999999999999888777789999999987543   6789999976


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....     ....+++.+.++|+|||++++..
T Consensus       150 ~~~~-----~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          150 AAKA-----QSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             TTSS-----SHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CcHH-----HHHHHHHHHHHhcCCCeEEEEee
Confidence            5432     34568999999999999998844

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.61  E-value=1.8e-15  Score=127.22  Aligned_cols=124  Identities=18%  Similarity=0.180  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++.... + .+++++..+|+.+..+.++||+|++. 
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~fD~Vi~~-  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIADFISDQMYDAVIAD-  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECchhccCcCCCccEEEEc-
Confidence            45579999999999999988874   789999999999999999998776 5 35799999999886666789999972 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                          ++.  ...+++.+.++|+|||++++.+...          ...+++.+.++++||..++...
T Consensus       187 ----~~~--~~~~l~~~~~~LkpgG~l~i~~~~~----------~~~~~~~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          187 ----IPD--PWNHVQKIASMMKPGSVATFYLPNF----------DQSEKTVLSLSASGMHHLETVE  236 (275)
T ss_dssp             ----CSC--GGGSHHHHHHTEEEEEEEEEEESSH----------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             ----CcC--HHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCeEEEEEE
Confidence                222  2467899999999999999987322          1357788889999999888765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.60  E-value=8.1e-15  Score=118.01  Aligned_cols=100  Identities=22%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+++....+.. +++++.+|..+. ...++||+|++..+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccCCCccEEEEccchh
Confidence            45689999999999999999888889999999999999999998876654 699999999873 3457899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      ++++        .+.++|+|||++++....
T Consensus       155 ~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          155 EIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             SCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             hhhH--------HHHHhcccCcEEEEEEcC
Confidence            8863        478999999999998754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.60  E-value=3.6e-15  Score=120.50  Aligned_cols=112  Identities=14%  Similarity=0.094  Sum_probs=92.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..++   .+++++|+++.                ++++..+|+.+ ..+.++||+|++..+++
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            456799999999999998883   68999999986                36788999887 34567899999999986


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +   .....+++++.++|+|||.+++.++...        ..+.+++.++++++||+++....
T Consensus       127 ~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          127 G---TNIRDFLEEANRVLKPGGLLKVAEVSSR--------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             S---SCHHHHHHHHHHHEEEEEEEEEEECGGG--------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             c---cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------CCCHHHHHHHHHHCCCEEEEEec
Confidence            4   3446889999999999999999875432        12789999999999999988654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.60  E-value=2.4e-14  Score=116.74  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  179 (274)
                      .++.+|||+|||+|..+..+++   +..+|+++|+++.++....+.....   .++.++.+|+..+.    ..++||+|+
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEEE
Confidence            4568999999999999998876   4569999999998875444433322   46999999998632    246899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +....    +.....+...+.++|+|||++++..........-.+.. ..++..+.++++||++++....
T Consensus       152 ~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e-~~~~~~~~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          152 VDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKE-IYKTEVEKLENSNFETIQIINL  216 (232)
T ss_dssp             ECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSS-STTHHHHHHHHTTEEEEEEEEC
T ss_pred             ecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHH-HHHHHHHHHHHCCCEEEEEecc
Confidence            87654    23334455666779999999999865443221111222 2355667888899999887764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.60  E-value=5.8e-15  Score=122.94  Aligned_cols=142  Identities=20%  Similarity=0.197  Sum_probs=106.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCee
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D  176 (274)
                      +..++.....++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++..     .  .++.+|+.+. .+.++||
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD  116 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFE  116 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEE
Confidence            334443322367899999999999999999988999999999999999998864     1  2788898873 4567899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------CC--------CCC------C-----CcccC
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------DH--------VGG------P-----PYKVS  228 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------~~--------~~~------~-----~~~~~  228 (274)
                      +|++..++.++.++ ...+++++.++|+|||.+++...+..         ..        ..+      .     ...++
T Consensus       117 ~v~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (260)
T 2avn_A          117 AVLALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFK  195 (260)
T ss_dssp             EEEECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBC
T ss_pred             EEEEcchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccC
Confidence            99998877666333 67899999999999999998765432         00        000      0     01357


Q ss_pred             HHHHHHHHhcCCCcEEEEeecc
Q 024021          229 VSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       229 ~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .+++.++   +||+++.+....
T Consensus       196 ~~~l~~l---aGf~~~~~~~~~  214 (260)
T 2avn_A          196 PEDLDSL---EGFETVDIRGIG  214 (260)
T ss_dssp             GGGGSSC---TTEEEEEEEEEC
T ss_pred             HHHHHHh---cCceEEEEECCC
Confidence            8888777   899998877644

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.60  E-value=5.9e-15  Score=125.73  Aligned_cols=137  Identities=15%  Similarity=0.100  Sum_probs=100.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCCCC---CCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFTWC---PTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~---~~~~~D~v  178 (274)
                      .++.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|+++++.   ....++++++.+|+.+..   +.++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            34579999999999999999874  56999999999999999998732   112357999999998732   46789999


Q ss_pred             EecccccccChhHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          179 FDYTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       179 ~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ++.......+....  ..+++.+.++|+|||++++.......      ......++.+.++++||..+.....
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~------~~~~~~~~~~~l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL------DLELIEKMSRFIRETGFASVQYALM  240 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT------CHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc------chHHHHHHHHHHHhCCCCcEEEEEe
Confidence            99766544332222  57899999999999999987532210      1124678899999999998876543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.60  E-value=1.8e-14  Score=117.45  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.++++....   .+++++.+|+.+.    ...++||+|++
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4579999999999999998863   479999999999999999988665   5799999999872    22458999997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ...    .+.....++..+.++|+|||.+++...........++..+..+++.++ +++ |++++....
T Consensus       150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~  212 (227)
T 1g8a_A          150 DVA----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNL  212 (227)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC
T ss_pred             CCC----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEecc
Confidence            654    223334568999999999999988732222111111222345677776 777 998877664

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=122.13  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+.++....   .+++++.+|+.+..    ..++||+|++
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4579999999999999999873   479999999999888777776554   46999999998732    3568999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc-ccCHHHHHHHHhcCCCcEEEEee
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY-KVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ..+    .++....++.++.++|+|||++++........ .+.+. ..-.++ .++|+++||+++....
T Consensus       154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~  216 (233)
T 2ipx_A          154 DVA----QPDQTRIVALNAHTFLRNGGHFVISIKANCID-STASAEAVFASE-VKKMQQENMKPQEQLT  216 (233)
T ss_dssp             CCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-SSSCHHHHHHHH-HHTTGGGTEEEEEEEE
T ss_pred             cCC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-cCCCHHHHHHHH-HHHHHHCCCceEEEEe
Confidence            655    22344567888999999999999965442111 11111 111123 5889999999988655

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.59  E-value=2.8e-15  Score=120.16  Aligned_cols=106  Identities=14%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC---CCCC-eeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC---PTEL-FDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~---~~~~-~D~v~~~  181 (274)
                      ++.+|||+|||+|.++..++..+. +|+++|+++.+++.|+++....+.. ++++++.+|+.+..   +.++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            468999999999999998766554 8999999999999999999887653 57999999987732   2468 9999998


Q ss_pred             ccccccChhHHHHHHHHH--HhcccCCcEEEEEEccC
Q 024021          182 TFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPI  216 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~--~~~L~pgG~~~~~~~~~  216 (274)
                      .+++ .  .....+++.+  .++|+|||.+++.....
T Consensus       133 ~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          133 PPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            8854 2  3456778888  67899999999877544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.59  E-value=5.7e-15  Score=119.14  Aligned_cols=131  Identities=19%  Similarity=0.125  Sum_probs=92.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.+.+.....   .++.++.+|+...    ...++||+|++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~~  132 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIYQ  132 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEEE
Confidence            35679999999999999988773  369999999999876665554433   3688888988763    23478999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHH----HHHhcCCCcEEEEeecc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE----EVLQPMGFQAISIVDNK  250 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~~~~~~~~  250 (274)
                      +..    ++.....++.++.++|||||++++.......     ....+++++.    +.++++ |++++.....
T Consensus       133 ~~~----~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~  196 (210)
T 1nt2_A          133 DIA----QKNQIEILKANAEFFLKEKGEVVIMVKARSI-----DSTAEPEEVFKSVLKEMEGD-FKIVKHGSLM  196 (210)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-----CTTSCHHHHHHHHHHHHHTT-SEEEEEEECT
T ss_pred             ecc----ChhHHHHHHHHHHHHhCCCCEEEEEEecCCc-----cccCCHHHHHHHHHHHHHhh-cEEeeeecCC
Confidence            731    2234445689999999999999988533210     0112344542    337888 9998887653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.59  E-value=8.9e-15  Score=125.96  Aligned_cols=129  Identities=15%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCC-----CCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~-----~~~~D~v~~~  181 (274)
                      ++.+|||+|||+|.++..+++.+++|+++|+++.+++.|++++..+++.+ +++++.+|+.+..+     .++||+|++.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            45799999999999999999888899999999999999999998776654 59999999987432     4689999997


Q ss_pred             ccccccC--------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh----cCCCcEE
Q 024021          182 TFFCAIE--------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ----PMGFQAI  244 (274)
Q Consensus       182 ~~~~~~~--------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~Gf~~~  244 (274)
                      .......        ......++..+.++|+|||.+++......        ..+.+.+.++++    .+|+.+.
T Consensus       233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~--------~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI--------RASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT--------TSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC--------CCCHHHHHHHHHHHHHHcCCeEE
Confidence            6532211        13456889999999999999777653321        224445555444    7888876

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=1.4e-14  Score=126.83  Aligned_cols=115  Identities=16%  Similarity=0.151  Sum_probs=92.3

Q ss_pred             HHHhcCC-CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCCCCCCC
Q 024021          100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTEL  174 (274)
Q Consensus       100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~  174 (274)
                      .++.... .++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.++++...++..+  +++|..+|+.+..+.++
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~  292 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR  292 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTC
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCC
Confidence            3444443 33479999999999999999884  7899999999999999999988766432  58889999998777789


Q ss_pred             eeEEEecccccc---cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ||+|+++.++++   +.......+++.+.++|+|||.++++..
T Consensus       293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n  335 (375)
T 4dcm_A          293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  335 (375)
T ss_dssp             EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence            999999998875   3334445789999999999999999763

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.59  E-value=1.6e-15  Score=127.34  Aligned_cols=159  Identities=11%  Similarity=0.026  Sum_probs=108.9

Q ss_pred             HHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEE-EEcccCCC---
Q 024021           97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTW---  169 (274)
Q Consensus        97 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~---  169 (274)
                      .+...+...  ..++.+|||+|||||.++..+++.|+ +|+|+|+++.|++.+.++.      .++.. ...|+...   
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGG
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchh
Confidence            344444443  33567999999999999999888775 9999999999998865432      22322 22333321   


Q ss_pred             -CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---C---CCCC-----cccCHHHHHHHHh
Q 024021          170 -CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---V---GGPP-----YKVSVSDYEEVLQ  237 (274)
Q Consensus       170 -~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~---~~~~-----~~~~~~~~~~~l~  237 (274)
                       .+...||+|++..+++++     ..++..+.++|+|||.+++...+..+.   .   .|..     +....+++.++++
T Consensus       146 ~l~~~~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~  220 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV  220 (291)
T ss_dssp             GCTTCCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHH
Confidence             233459999998887765     467899999999999999874332211   1   1221     1136788999999


Q ss_pred             cCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024021          238 PMGFQAISIVDNKLAIGPRKGREKLGRWKRS  268 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (274)
                      ++||.+..+...  ++.+..++..+..|.+.
T Consensus       221 ~~Gf~v~~~~~s--pi~g~~gn~e~l~~~~~  249 (291)
T 3hp7_A          221 DYGFSVKGLDFS--PIQGGHGNIEFLAHLEK  249 (291)
T ss_dssp             HTTEEEEEEEEC--SSCCGGGCCCEEEEEEE
T ss_pred             HCCCEEEEEEEC--CCCCCCcCHHHHHHhhh
Confidence            999999888774  44454566666666554

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.59  E-value=7.3e-15  Score=128.03  Aligned_cols=131  Identities=15%  Similarity=0.193  Sum_probs=105.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|..+..+++  ++.+++++|+ +.+++.+++    .   .+++++.+|+++..+  .||+|++..+++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---~~v~~~~~d~~~~~~--~~D~v~~~~vlh  262 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N---ENLNFVGGDMFKSIP--SADAVLLKWVLH  262 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C---SSEEEEECCTTTCCC--CCSEEEEESCGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C---CCcEEEeCccCCCCC--CceEEEEccccc
Confidence            347999999999999999987  5679999999 788776653    1   359999999987433  499999999999


Q ss_pred             ccChhHHHHHHHHHHhcccC---CcEEEEEEccCCCCCCCC------------------CcccCHHHHHHHHhcCCCcEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKP---DGELITLMFPISDHVGGP------------------PYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      +++++....+++++.++|+|   ||++++.++...+....+                  ....+.+++.++++++||+.+
T Consensus       263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~  342 (358)
T 1zg3_A          263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY  342 (358)
T ss_dssp             GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence            99887777999999999999   999999876543322110                  112378999999999999999


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      ++..
T Consensus       343 ~~~~  346 (358)
T 1zg3_A          343 KITP  346 (358)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8876

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=4e-15  Score=120.93  Aligned_cols=127  Identities=15%  Similarity=0.161  Sum_probs=94.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC----CCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP----TELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~----~~~~D  176 (274)
                      .++.+|||+|||+|..+..+++   ++.+|+++|+++.+++.|++++...+..++++++.+|+.+.   ..    .++||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            3568999999999999999987   37799999999999999999998877777899999998652   11    16899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~  246 (274)
                      +|++....++..  ....++..+ ++|+|||++++......          ...++.+.++... |....+
T Consensus       137 ~V~~d~~~~~~~--~~~~~~~~~-~~LkpgG~lv~~~~~~~----------~~~~~~~~l~~~~~~~~~~~  194 (221)
T 3u81_A          137 MVFLDHWKDRYL--PDTLLLEKC-GLLRKGTVLLADNVIVP----------GTPDFLAYVRGSSSFECTHY  194 (221)
T ss_dssp             EEEECSCGGGHH--HHHHHHHHT-TCCCTTCEEEESCCCCC----------CCHHHHHHHHHCTTEEEEEE
T ss_pred             EEEEcCCcccch--HHHHHHHhc-cccCCCeEEEEeCCCCc----------chHHHHHHHhhCCCceEEEc
Confidence            999887666542  223556666 99999999988543221          2345556665554 544433

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.58  E-value=5.2e-15  Score=120.06  Aligned_cols=105  Identities=17%  Similarity=0.161  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEec
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~  181 (274)
                      ++.+|||||||+|..+..+++  ++..|+|+|+++.+++.|+++....+.. ++.++.+|+.+.    .++++||.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            567999999999999999986  5678999999999999999998877653 699999998773    567899999987


Q ss_pred             ccccccChhHH------HHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMR------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+..+......      ..+++.+.++|+|||.+++.+
T Consensus       113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            54332211111      258999999999999999877

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.58  E-value=6.8e-15  Score=116.04  Aligned_cols=107  Identities=17%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~  180 (274)
                      .++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....+..++++++.+|+.+..+     .++||+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            356899999999999999887755 59999999999999999998877665689999999977322     578999999


Q ss_pred             cccccccChhHHHHHHHHH--HhcccCCcEEEEEEccC
Q 024021          181 YTFFCAIEPEMRAAWAQKI--KDFLKPDGELITLMFPI  216 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~--~~~L~pgG~~~~~~~~~  216 (274)
                      +.++....   ....+..+  .++|+|||.+++.....
T Consensus       123 ~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          123 DPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             CCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence            88865322   23455666  88999999999876443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.58  E-value=8e-15  Score=122.62  Aligned_cols=105  Identities=20%  Similarity=0.221  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCCcch----hHHHhhC--C----CCeEEEEeCChHHHHHHHHHhhc-----------------------CC
Q 024021          108 PKGRALVPGCGTGY----DVVAMAS--P----ERYVVGLEISDIAIKKAEELSSS-----------------------LP  154 (274)
Q Consensus       108 ~~~~vLDiG~G~G~----~~~~l~~--~----~~~v~~vD~~~~~~~~a~~~~~~-----------------------~~  154 (274)
                      ++.+|+|+|||||.    +++.+++  .    +.+|+|+|+|+.+++.|++....                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34699999999998    4444544  2    46999999999999999987521                       00


Q ss_pred             -------CCcceEEEEcccCCC-CC-CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          155 -------NAKFVSFLKADFFTW-CP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       155 -------~~~~~~~~~~d~~~~-~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                             +..++.|...|+.+. .+ .++||+|+|.+++.|++++....++.+++++|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   013699999999883 33 47899999999999999888899999999999999999883

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.58  E-value=1.9e-15  Score=117.49  Aligned_cols=103  Identities=18%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++.+..++++|+++.+++.|+++....+.  +++++.+|+.+..+     .++||+|+++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            568999999999999999998888899999999999999999877654  69999999876321     24799999998


Q ss_pred             cccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024021          183 FFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~  216 (274)
                      +++...    ..+++.+.  ++|+|||.+++.....
T Consensus       119 ~~~~~~----~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYAMDL----AALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTTSCT----THHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCchhH----HHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            775211    23455555  9999999999877544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.58  E-value=1.6e-14  Score=119.83  Aligned_cols=133  Identities=17%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             CeEEEEcCCc--chhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----C--CCCee-
Q 024021          110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----P--TELFD-  176 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~--~~~~D-  176 (274)
                      .+|||+|||+  +.++..++.   ++.+|+++|.|+.|++.|+.++.... ..+++|+.+|+.++.     +  .+.|| 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence            6899999997  444444432   78899999999999999999986542 247999999998731     1  23455 


Q ss_pred             ----EEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCc-ccCHHHHHHHHhc
Q 024021          177 ----LIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPY-KVSVSDYEEVLQP  238 (274)
Q Consensus       177 ----~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~l~~  238 (274)
                          .|+++.+++++++.. ...++.++.+.|+|||++++........            ..+.++ ..+.+++..+|. 
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~-  237 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE-  237 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT-
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC-
Confidence                688999999998754 4789999999999999999988765421            122233 458899999995 


Q ss_pred             CCCcEEE
Q 024021          239 MGFQAIS  245 (274)
Q Consensus       239 ~Gf~~~~  245 (274)
                       ||++++
T Consensus       238 -Glelve  243 (277)
T 3giw_A          238 -GLELVE  243 (277)
T ss_dssp             -TSEECT
T ss_pred             -CCcccC
Confidence             999754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.57  E-value=8.5e-15  Score=118.62  Aligned_cols=141  Identities=12%  Similarity=0.061  Sum_probs=96.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHH----hhcCCCCcceEEEEcccCCCC-CCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL----SSSLPNAKFVSFLKADFFTWC-PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v  178 (274)
                      ..++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+.+.    ....+. ++++++.+|+.+.. +.+. |.|
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEE
Confidence            345679999999999999999884  78999999999988864332    223332 47999999998843 3344 777


Q ss_pred             Eeccccc-----ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcc---cCHHHHHHHHhcCCCcEEE
Q 024021          179 FDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYK---VSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       179 ~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +....+.     ++++  ...+++++.++|+|||.+++........     ..+.+..   ...+++.++++++||++..
T Consensus       103 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~  180 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD  180 (218)
T ss_dssp             EEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence            6333222     2221  1578999999999999999854322110     0111111   1234588899999999999


Q ss_pred             Eeecc
Q 024021          246 IVDNK  250 (274)
Q Consensus       246 ~~~~~  250 (274)
                      +....
T Consensus       181 ~~~~~  185 (218)
T 3mq2_A          181 CRYLE  185 (218)
T ss_dssp             EEEEC
T ss_pred             eeccc
Confidence            87754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=9.4e-15  Score=126.86  Aligned_cols=104  Identities=21%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++ +++.|+++....+..++++++.+|+.+. .+.++||+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            3568999999999999999998766 999999995 9999999998888877899999999984 455899999998765


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEEE
Q 024021          185 CAI-EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +++ .......++..+.++|+|||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            544 234567889999999999999874

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.57  E-value=1.5e-14  Score=125.62  Aligned_cols=105  Identities=20%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+. +|+++|+++ +++.|+++...+++.++++++.+|+.+...+++||+|++..+++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            4668999999999999999988765 999999996 88999999888877778999999998855457899999998888


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ++..+.....+..+.++|+|||.+++.
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            776555567778899999999999853

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.57  E-value=6.8e-15  Score=121.83  Aligned_cols=108  Identities=14%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC----CCeEEEEeCChHHHHHHHHHhhcC---CCCcc----------------------
Q 024021          108 PKGRALVPGCGTGYDVVAMASP----ERYVVGLEISDIAIKKAEELSSSL---PNAKF----------------------  158 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~----------------------  158 (274)
                      ++.+|||+|||+|.++..+++.    +.+|+|+|+++.+++.|+++....   +..++                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999988764    569999999999999999887655   33222                      


Q ss_pred             ---eE-------------EEEcccCCCC------CCCCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEE
Q 024021          159 ---VS-------------FLKADFFTWC------PTELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGEL  209 (274)
Q Consensus       159 ---~~-------------~~~~d~~~~~------~~~~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~  209 (274)
                         ++             |..+|+.+..      ...+||+|+++.++.+...       +....+++++.++|+|||++
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence               66             9999998854      3458999999987766532       45678999999999999999


Q ss_pred             EEEEcc
Q 024021          210 ITLMFP  215 (274)
Q Consensus       210 ~~~~~~  215 (274)
                      ++....
T Consensus       211 ~~~~~~  216 (250)
T 1o9g_A          211 AVTDRS  216 (250)
T ss_dssp             EEEESS
T ss_pred             EEeCcc
Confidence            985533

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.57  E-value=9.5e-15  Score=114.41  Aligned_cols=107  Identities=19%  Similarity=0.114  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....+..++++++.+|+.+.  ...++||+|+++.+
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            456799999999999999888765 599999999999999999998887766899999999772  23457999999877


Q ss_pred             ccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024021          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI  216 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~~~~  216 (274)
                      ++.   ......++.+.  ++|+|||.+++.....
T Consensus       110 ~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          110 YAK---ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            642   33456667776  9999999999877544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=126.75  Aligned_cols=104  Identities=22%  Similarity=0.136  Sum_probs=88.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++++|||||||+|.+++.+++.|+ +|+++|.++ +++.|++.+..+++.++++++.+|+.+...+++||+|++-..-.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~  160 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGY  160 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBT
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccc
Confidence            4578999999999999999998887 899999986 88999999999999899999999999866668999999865544


Q ss_pred             cc-ChhHHHHHHHHHHhcccCCcEEEE
Q 024021          186 AI-EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~-~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      .+ .......++....++|+|||.++-
T Consensus       161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          161 GLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccchhhhHHHHHHhhCCCCceECC
Confidence            43 234677888999999999999773

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.56  E-value=9.4e-15  Score=121.26  Aligned_cols=124  Identities=19%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|+++.... + .+++++..+|+.+. .+.++||+|++.
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            45679999999999999988874   679999999999999999998665 4 46799999999885 556789999973


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                           .+  ....+++.+.++|+|||.+++.....          ....++.+.++++||..+.+.+
T Consensus       174 -----~~--~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          174 -----LM--EPWKVLEKAALALKPDRFLVAYLPNI----------TQVLELVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             -----SS--CGGGGHHHHHHHEEEEEEEEEEESCH----------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred             -----Cc--CHHHHHHHHHHhCCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCceEEEEE
Confidence                 22  12367899999999999999987322          1356788889999999877654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.56  E-value=6.7e-14  Score=112.33  Aligned_cols=129  Identities=13%  Similarity=0.074  Sum_probs=100.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+. +++|+|+++.+++.++++....+.  +++++.+|+.+..  ++||+|+++.+++
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p~~  123 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPPFG  123 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCCCS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCCCc
Confidence            4568999999999999999988765 799999999999999999887654  6999999998753  4899999999887


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      .........+++.+.+++  |+ +++.....         ..+.+.+.+.+++.||.+..+.....
T Consensus       124 ~~~~~~~~~~l~~~~~~l--~~-~~~~~~~~---------~~~~~~~~~~l~~~g~~~~~~~~~~~  177 (207)
T 1wy7_A          124 SQRKHADRPFLLKAFEIS--DV-VYSIHLAK---------PEVRRFIEKFSWEHGFVVTHRLTTKI  177 (207)
T ss_dssp             SSSTTTTHHHHHHHHHHC--SE-EEEEEECC---------HHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccCCchHHHHHHHHHhc--Cc-EEEEEeCC---------cCCHHHHHHHHHHCCCeEEEEEEEec
Confidence            765444457788888888  44 44433111         11467788899999998877765443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.56  E-value=8.5e-15  Score=123.12  Aligned_cols=125  Identities=19%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++.+++.|+++....+..+++++..+|+.+..+.++||+|++.. 
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~-  189 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV-  189 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC-
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECC-
Confidence            45679999999999999988873   67999999999999999999887766568999999998876667899999742 


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                          +  ....+++.+.++|+|||.+++.....          ....++.+.+++.||..+++..
T Consensus       190 ----~--~~~~~l~~~~~~L~pgG~l~~~~~~~----------~~~~~~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          190 ----P--DPWNYIDKCWEALKGGGRFATVCPTT----------NQVQETLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             ----S--CGGGTHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             ----c--CHHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCceeEEEE
Confidence                1  12367899999999999999987322          1356788888899999877654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.56  E-value=2.4e-14  Score=116.93  Aligned_cols=106  Identities=19%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             HHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeE
Q 024021          100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus       100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~  177 (274)
                      .++... ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.++++....+   +++++.+|+.+ ....++||+
T Consensus        61 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~fD~  137 (231)
T 1vbf_A           61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEEKPYDR  137 (231)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccCCCccE
Confidence            344433 3456799999999999999998877899999999999999999987664   69999999987 333578999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      |++..++++++        +.+.++|+|||++++.....
T Consensus       138 v~~~~~~~~~~--------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL--------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC--------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH--------HHHHHHcCCCcEEEEEEcCC
Confidence            99999999885        35888999999999987543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.56  E-value=3.1e-16  Score=129.14  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|++++...+..++++++.+|+.+..+.++||+|+++.++++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            67899999999999999999988999999999999999999998887666899999999886667799999999998876


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +..  ...+..+.++|+|||.+++........  ..-.+.....+++..++...|...+..
T Consensus       158 ~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~  216 (241)
T 3gdh_A          158 DYA--TAETFDIRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQ  216 (241)
T ss_dssp             GGG--GSSSBCTTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEE
T ss_pred             chh--hhHHHHHHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEe
Confidence            432  235667899999999966543211100  000112236788888888877655443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.56  E-value=2.7e-14  Score=119.32  Aligned_cols=132  Identities=12%  Similarity=0.024  Sum_probs=106.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.| .+|+++|++|.+++.+++++..+++.++++++.+|..+..+.+.||.|+++.+.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p~  202 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  202 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCCC
Confidence            4567899999999999999988865 599999999999999999999999989999999999998777899999976553


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ..      ..++..+.++|++||++.+.++.......    ....+.+.+.++..|+.+..+.
T Consensus       203 ~~------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~----~~~~e~i~~~~~~~g~~v~~~~  255 (278)
T 3k6r_A          203 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLMP----REPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGTT----TTTHHHHHHHHHHTTCEEEEEE
T ss_pred             cH------HHHHHHHHHHcCCCCEEEEEeeecccccc----hhHHHHHHHHHHHcCCcEEEEE
Confidence            32      24567788999999998776654432211    1245778888999999875543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.56  E-value=1.2e-14  Score=127.38  Aligned_cols=106  Identities=17%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.|. +|+|+|++ .+++.|++++..+++.++++++.+|+.+...+++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            4568999999999999999998877 99999999 999999999988888788999999998855458899999977655


Q ss_pred             ccCh-hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          186 AIEP-EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+.. .....++..+.++|+|||++++..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            5532 456778999999999999997643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.55  E-value=2.7e-14  Score=123.53  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+++ +++.|++++..+++.++++++.+|+.+. .+.++||+|++..+.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            4568999999999999999988765 999999997 9999999998887777899999999884 445789999998743


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024021          185 CAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      ..+ .......++..+.++|+|||.++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            333 23456788999999999999987

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.55  E-value=1.5e-14  Score=117.57  Aligned_cols=103  Identities=19%  Similarity=0.072  Sum_probs=86.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCeeE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~D~  177 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+      .++||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            35689999999999999999884   789999999999999999999888777789999999976322      157999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |++....     .....+++.+.++|+|||++++...
T Consensus       137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9976653     2345788999999999998887543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.55  E-value=1.6e-14  Score=115.77  Aligned_cols=105  Identities=10%  Similarity=-0.009  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~  184 (274)
                      ++.+|||+|||+|..+..++..+. +|+++|+++.+++.|+++....+. ++++++.+|+.+  ....++||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            468999999999999998776664 999999999999999999987765 579999999877  2345689999998775


Q ss_pred             cccChhHHHHHHHHHHh--cccCCcEEEEEEccC
Q 024021          185 CAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI  216 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~  216 (274)
                      + .  .....+++.+.+  +|+|||++++.....
T Consensus       133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 R-R--GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             C-C--CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            4 2  233466777765  599999999877544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.54  E-value=3.8e-14  Score=117.29  Aligned_cols=103  Identities=18%  Similarity=0.117  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C--CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C--PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~--~~~~~D~v~  179 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+.  .  ..++||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            35689999999999999999884   7899999999999999999998888777899999998762  1  234899999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +....     .....+++.+.++|+|||++++...
T Consensus       142 ~d~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          142 IDADK-----PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             ECSCG-----GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             ECCch-----HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            86532     3445789999999999999988654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.54  E-value=1.5e-14  Score=117.63  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=83.9

Q ss_pred             CeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC---CCCCCeeEEEecc
Q 024021          110 GRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW---CPTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~~D~v~~~~  182 (274)
                      .+|||+|||+|..+..+++   ++.+|+++|+++.+++.|++++...+.. ++++++.+|+.+.   .+.++||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            4999999999999999886   3789999999999999999999988887 7899999998763   2257899999765


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     .....+++.+.++|+|||++++.+
T Consensus       138 ~~-----~~~~~~l~~~~~~LkpGG~lv~dn  163 (221)
T 3dr5_A          138 SP-----MDLKALVDAAWPLLRRGGALVLAD  163 (221)
T ss_dssp             CT-----TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred             cH-----HHHHHHHHHHHHHcCCCcEEEEeC
Confidence            43     234568999999999999999844

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.53  E-value=1.7e-14  Score=117.31  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=86.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-------CCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-------ELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~D  176 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+.       ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            35679999999999999999884   7899999999999999999998888777899999998663211       6899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +|++....     .....+++.+.++|+|||++++....
T Consensus       143 ~v~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          143 LIYIDADK-----ANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEECCCH-----HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99965542     33467889999999999999986543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=4.6e-14  Score=113.96  Aligned_cols=100  Identities=23%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|..+..+++.+   .+|+++|+++.+++.++++....+. .++++..+|+....+ .++||+|++..
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~v~~~~  154 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGTLGYEPLAPYDRIYTTA  154 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCCCCCeeEEEECC
Confidence            456799999999999999988743   7999999999999999998876544 359999999866433 56899999999


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      ++++++        +.+.++|+|||.+++....
T Consensus       155 ~~~~~~--------~~~~~~L~pgG~lv~~~~~  179 (215)
T 2yxe_A          155 AGPKIP--------EPLIRQLKDGGKLLMPVGR  179 (215)
T ss_dssp             BBSSCC--------HHHHHTEEEEEEEEEEESS
T ss_pred             chHHHH--------HHHHHHcCCCcEEEEEECC
Confidence            999886        3788999999999998743

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.53  E-value=3.4e-14  Score=128.04  Aligned_cols=104  Identities=21%  Similarity=0.216  Sum_probs=89.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+++ +++.|++++..+++.++++++.+|+.+...+++||+|++..+++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            356899999999999999988865 4999999998 99999999988887788999999998854456899999988877


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      ++..+.....+..+.++|+|||.+++
T Consensus       236 ~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          236 MLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             HHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             hcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            77655556677789999999999885

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.53  E-value=5e-13  Score=110.76  Aligned_cols=143  Identities=15%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCC---CCCeeEE
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCP---TELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~D~v  178 (274)
                      ++.+|||+|||+|..+..++.  ++.+|+|+|+++.+++.|+++....+..++++++.+|+.+    ..+   .++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            457999999999999988876  4689999999999999999999888776779999999654    233   2579999


Q ss_pred             EecccccccCh-------------hHHHHHHHHHHhcccCCcEEEEEEccCC-----CCCCC-----CCcccCHHHHHHH
Q 024021          179 FDYTFFCAIEP-------------EMRAAWAQKIKDFLKPDGELITLMFPIS-----DHVGG-----PPYKVSVSDYEEV  235 (274)
Q Consensus       179 ~~~~~~~~~~~-------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~  235 (274)
                      +++.++.....             .....++..+.++|+|||.+.+...-..     ....+     .......+++.++
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  224 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE  224 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHH
Confidence            99977664430             0112344555666666665443211000     00000     0011134789999


Q ss_pred             HhcCCCcEEEEeecc
Q 024021          236 LQPMGFQAISIVDNK  250 (274)
Q Consensus       236 l~~~Gf~~~~~~~~~  250 (274)
                      ++++||..+.+....
T Consensus       225 l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          225 LRIQGVPKVTYTEFC  239 (254)
T ss_dssp             HHHTTCSEEEEEEEE
T ss_pred             HHHcCCCceEEEEEe
Confidence            999999988776543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.52  E-value=6.2e-14  Score=115.00  Aligned_cols=127  Identities=13%  Similarity=0.107  Sum_probs=90.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhc-----CCCCcceEEEEcccCC-C---CCCCCee
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFT-W---CPTELFD  176 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~-----~~~~~~~~~~~~d~~~-~---~~~~~~D  176 (274)
                      ++.+|||||||+|.++..+++  ++..++|+|+++.+++.|++++..     .....++.++.+|+.+ .   .+.++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            346899999999999999987  467999999999999999887642     1122579999999986 2   4568899


Q ss_pred             EEEecccccccCh--hH----HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024021          177 LIFDYTFFCAIEP--EM----RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI  244 (274)
Q Consensus       177 ~v~~~~~~~~~~~--~~----~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~  244 (274)
                      .|++...-.+...  ..    ...+++.+.++|+|||.+++.....          .-.+.+.+.+..+| |..+
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~----------~~~~~~~~~l~~~~~f~~~  190 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL----------ELHDWMCTHFEEHPLFERV  190 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH----------HHHHHHHHHHHTSTTEEEE
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH----------HHHHHHHHHHHHCCCcccc
Confidence            9987543221100  00    1368999999999999999876211          12355666777776 5443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.52  E-value=5e-14  Score=121.25  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..++..++++++.+|+.+. .+.++||+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            3467999999999999999988766 99999999 58999999998888778899999999884 444789999998765


Q ss_pred             ccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024021          185 CAI-EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~-~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      +.+ .......++..+.++|+|||.++
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            544 23445678899999999999987

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.52  E-value=2.2e-13  Score=108.79  Aligned_cols=121  Identities=14%  Similarity=0.061  Sum_probs=90.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++..      +++++.+|+.+..  ++||+|+++.+++
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~~  121 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPFG  121 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC-
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCch
Confidence            4568999999999999999988765 79999999999999999874      5899999998753  6899999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      ++.......+++.+.+.+   |.+++.....           +...+.+.++..| .+..+....
T Consensus       122 ~~~~~~~~~~l~~~~~~~---g~~~~~~~~~-----------~~~~~~~~~~~~g-~~~~~~~~~  171 (200)
T 1ne2_A          122 SVVKHSDRAFIDKAFETS---MWIYSIGNAK-----------ARDFLRREFSARG-DVFREEKVY  171 (200)
T ss_dssp             ------CHHHHHHHHHHE---EEEEEEEEGG-----------GHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             hccCchhHHHHHHHHHhc---CcEEEEEcCc-----------hHHHHHHHHHHCC-CEEEEEEEe
Confidence            886544457888888888   4455444211           4677888899988 665555433

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.52  E-value=1.7e-13  Score=119.97  Aligned_cols=128  Identities=17%  Similarity=0.220  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|++++...++.+++++..+|+.+. .+.++||+|+++.
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            34568999999999999999988665  99999999999999999999888777899999999984 4457899999988


Q ss_pred             cccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++....      .+....+++.+.++|  +|.+++...             +.+.+.+.++..||+..+...
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------~~~~~~~~~~~~G~~~~~~~~  351 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------EKKAIEEAIAENGFEIIHHRV  351 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------CHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------CHHHHHHHHHHcCCEEEEEEE
Confidence            765421      122367888899988  444444431             678889999999999877544

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.51  E-value=5.3e-14  Score=121.89  Aligned_cols=114  Identities=19%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      ...++... ..++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.++++....+.  .++++.+|+.+.. .++
T Consensus       185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~  261 (343)
T 2pjd_A          185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV-KGR  261 (343)
T ss_dssp             HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC-CSC
T ss_pred             HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc-cCC
Confidence            33444433 334579999999999999999873  46999999999999999999877664  3677889987744 578


Q ss_pred             eeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ||+|+++.++++.   +.+....+++++.++|+|||.+++...
T Consensus       262 fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          262 FDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             eeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            9999999998752   335567899999999999999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.51  E-value=5.3e-14  Score=116.30  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=85.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  175 (274)
                      .++.+|||+|||+|..+..+++  + +.+|+++|+++.+++.|++++...+..++++++.+|..+..+        .++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3567999999999999998887  3 789999999999999999999888777789999999876321        5789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|++....     .....+++.+.++|+|||++++..
T Consensus       158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEec
Confidence            999986542     234678899999999999998854

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=1.4e-13  Score=119.74  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=101.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|.++..++.   ++.+++|+|+++.+++.|++++...++. ++++..+|+.+. .+.+.||+|+++.
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~~~~~~D~Ii~np  280 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANP  280 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCccccCCCCEEEECC
Confidence            4567999999999999998887   3479999999999999999999988876 899999999984 3456689999998


Q ss_pred             cccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++.....      .....+++.+.++|+|||.+++.+.             +.+.+.++++ .||+..+...
T Consensus       281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-------------~~~~~~~~~~-~g~~~~~~~~  338 (354)
T 3tma_A          281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-------------RPALLKRALP-PGFALRHARV  338 (354)
T ss_dssp             CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-------------CHHHHHHHCC-TTEEEEEEEE
T ss_pred             CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC-------------CHHHHHHHhh-cCcEEEEEEE
Confidence            8764211      1236788999999999999999862             4555666666 8888766544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.51  E-value=7.8e-14  Score=117.61  Aligned_cols=120  Identities=14%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe---eEEEeccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF---DLIFDYTF  183 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---D~v~~~~~  183 (274)
                      ++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++....+..++++|+.+|+.+..+ ++|   |+|+++..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccCCCCEEEEcCC
Confidence            4579999999999999998874 789999999999999999999888776679999999988543 478   99999855


Q ss_pred             cccc-----------ChhH------HHHHHHHHH-hcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024021          184 FCAI-----------EPEM------RAAWAQKIK-DFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       184 ~~~~-----------~~~~------~~~~l~~~~-~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (274)
                      +...           +...      ...+++++. +.|+|||.+++.. +..          ..+++.+++++.
T Consensus       202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~-~~~----------q~~~v~~~~~~~  264 (284)
T 1nv8_A          202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GED----------QVEELKKIVSDT  264 (284)
T ss_dssp             CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTT----------CHHHHTTTSTTC
T ss_pred             CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE-Cch----------HHHHHHHHHHhC
Confidence            4421           1110      116789999 9999999999754 111          355676777664

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.51  E-value=1.1e-14  Score=120.01  Aligned_cols=104  Identities=16%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D  176 (274)
                      .++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.|++++...+..++++++.+|+.+..+       .++||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            3467999999999999999987   3679999999999999999999888877789999999976322       47899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +|++...     ......+++.+.++|+|||++++.+..
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            9997654     234457899999999999999986543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.50  E-value=1.6e-13  Score=114.57  Aligned_cols=129  Identities=24%  Similarity=0.218  Sum_probs=96.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++.      .++.+..+|+.+ ..+.++||+|++..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            45689999999999999998874  789999999999999999875      458899999887 345678999998665


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      ..         .++++.++|+|||.+++........      ..........    ..+..+||+++..........
T Consensus       158 ~~---------~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gf~~~~~~~~~~~~~  221 (269)
T 1p91_A          158 PC---------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAP----HAEQLEGFTLQQSAELCYPMR  221 (269)
T ss_dssp             CC---------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCC----CCCCCTTEEEEEEEEEEEEEE
T ss_pred             hh---------hHHHHHHhcCCCcEEEEEEcCHHHHHHHHHHhhcccccccc----hhhHhcCCcEEEEEEEEEEEE
Confidence            32         3688999999999999987654321      0000000000    345678999988877655544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.50  E-value=1e-13  Score=113.12  Aligned_cols=139  Identities=11%  Similarity=0.022  Sum_probs=106.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|-++..++.  +..+|+++|+++.+++.+++++..++.  +.++...|+....+.++||+++++-++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccCCCCCcchHHHHHHH
Confidence            3467999999999999988876  566999999999999999999988774  489999999988888999999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++++......+ ++.+.|+++|+++......-....-.....-.+.+.+.+.+.|+.+.+.+-
T Consensus       209 ~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~  271 (281)
T 3lcv_B          209 PCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEI  271 (281)
T ss_dssp             HHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             HHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeee
Confidence            999755444555 899999999988765531111101011112357888888888996655543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.50  E-value=6.5e-14  Score=121.86  Aligned_cols=118  Identities=16%  Similarity=0.109  Sum_probs=88.6

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEEc
Q 024021           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLKA  164 (274)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~  164 (274)
                      ..+..++... ..++.+|||+|||+|..+..++. .+. +++|||+++.+++.|+++..       ..+. ..+++|+++
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            3355555544 34568999999999999998875 555 59999999999999987542       2333 257999999


Q ss_pred             ccCCCCCC---CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          165 DFFTWCPT---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       165 d~~~~~~~---~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      |+.+....   ..||+|+++.++.  . +.....+.++.+.|+|||+|++.+.-.
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F--~-pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAF--G-PEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTC--C-HHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             cccCCccccccCCccEEEEccccc--C-chHHHHHHHHHHcCCCCcEEEEeeccc
Confidence            99883321   3699999987753  3 345667789999999999999865433

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.50  E-value=8.4e-14  Score=114.81  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  185 (274)
                      .++.+|||+|||+|..+..+++.+.+++++|+++.+++.|+++....+..+++++..+|+.+.. +.++||+|++...  
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~--  167 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR--  167 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS--
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc--
Confidence            4568999999999999998887777999999999999999999887766568999999998865 5678999997422  


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                           ....+++.+.++|+|||.+++.....          ....++.+.+++. |..+....
T Consensus       168 -----~~~~~l~~~~~~L~~gG~l~~~~~~~----------~~~~~~~~~l~~~-f~~~~~~~  214 (248)
T 2yvl_A          168 -----EPWHYLEKVHKSLMEGAPVGFLLPTA----------NQVIKLLESIENY-FGNLEVVE  214 (248)
T ss_dssp             -----CGGGGHHHHHHHBCTTCEEEEEESSH----------HHHHHHHHHSTTT-EEEEEEEE
T ss_pred             -----CHHHHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhh-CCcceEEE
Confidence                 12357899999999999999987322          1345677777776 77665543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.49  E-value=2.6e-13  Score=119.27  Aligned_cols=137  Identities=9%  Similarity=-0.044  Sum_probs=102.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCC-----CCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~-----~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..++..++ +|+++|+++.+++.|++++..++..+ +++|+.+|+.+..+     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            4568999999999999999998666 89999999999999999999887765 89999999977321     35899999


Q ss_pred             eccccc-----ccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          180 DYTFFC-----AIEP--EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~-----~~~~--~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +.....     ....  .....++..+.++|+|||++++.+......     ...-.+.+.+.+..+|..++....
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~~~~  361 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-----VSQFKKQIEKGFGKQKHTYLDLQQ  361 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-----HHHHHHHHHHHHHHcCCcEEEeCC
Confidence            976652     2221  234567888899999999999987544211     001124455667778888555443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.49  E-value=8e-14  Score=114.06  Aligned_cols=102  Identities=21%  Similarity=0.282  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~  180 (274)
                      .++.+|||+|||+|..+..+++  ++.+|+++|+++.+++.|++++...+..++++++.+|+.+..+    .++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            3567999999999999999887  3789999999999999999999887776789999999987321    468999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .....     ....+++.+.++|+|||.+++.+
T Consensus       133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EGGGS-----CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence            76643     33578899999999999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.49  E-value=1.1e-13  Score=118.60  Aligned_cols=110  Identities=22%  Similarity=0.146  Sum_probs=88.8

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT  172 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~  172 (274)
                      ...++... ..++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|+++....+.. ++++..+|+.+. ...
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccccC
Confidence            33444443 345689999999999999999873   346999999999999999998877654 499999999873 345


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ++||+|++..++++++        +.+.++|+|||++++...+.
T Consensus       143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECCC
Confidence            7899999999999886        46788999999999976544

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.49  E-value=2.2e-13  Score=111.70  Aligned_cols=101  Identities=19%  Similarity=0.118  Sum_probs=83.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~  183 (274)
                      ..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|+++....+.. ++++..+|+....+ ..+||+|++..+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~Ii~~~~  167 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPKAPYDVIIVTAG  167 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCcccCCCCCCCccEEEECCc
Confidence            3456799999999999999998854 89999999999999999998776653 49999999844333 345999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +++++        +.+.+.|+|||++++....
T Consensus       168 ~~~~~--------~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          168 APKIP--------EPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             BSSCC--------HHHHHTEEEEEEEEEEECS
T ss_pred             HHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            88875        2678899999999998743

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.49  E-value=7.8e-14  Score=112.32  Aligned_cols=100  Identities=17%  Similarity=0.130  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++....+..++++++.+|..+.  ...+ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            4679999999999999999873   7799999999999999999987766666899999998762  2345 99999864


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..     .....+++.+.++|+|||++++..
T Consensus       135 ~~-----~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          135 DV-----FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             TT-----SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             Ch-----hhhHHHHHHHHHhcCCCeEEEEEC
Confidence            32     234678999999999999998854

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.48  E-value=1.1e-13  Score=108.30  Aligned_cols=119  Identities=14%  Similarity=0.029  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C---CCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C---PTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~---~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||.              +++|+++.+++.|+++...     ++++..+|+.+. .   ++++||+|++.
T Consensus        10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~~~   70 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIILSG   70 (176)
T ss_dssp             CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEEEC
Confidence            34568999999986              2399999999999998642     389999999873 3   56789999999


Q ss_pred             cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          182 TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      .+++++ ++.  ..++++++++|||||++++....... .....+..+.+++.++++++|| +. +..
T Consensus        71 ~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf-i~-~~~  133 (176)
T 2ld4_A           71 LVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVETA-VDNNSKVKTASKLCSALTLSGL-VE-VKE  133 (176)
T ss_dssp             CSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESS-SCSSSSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred             ChhhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccc-cccccccCCHHHHHHHHHHCCC-cE-eec
Confidence            999998 433  67899999999999999985432211 1113344578999999999999 44 443

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.48  E-value=1e-12  Score=115.02  Aligned_cols=128  Identities=14%  Similarity=0.087  Sum_probs=100.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~D~v~~~  181 (274)
                      .++.+|||+| |+|.++..++..+  .+|+++|+++.+++.|+++....+.. +++++.+|+.+..+   .++||+|+++
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence            4568999999 9999999988743  59999999999999999999877664 79999999988332   3589999999


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEE-EEEEccCCCCCCCCCcccCH---HHHHHHHh-cCCCcEEEEee
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGEL-ITLMFPISDHVGGPPYKVSV---SDYEEVLQ-PMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~~Gf~~~~~~~  248 (274)
                      .+++..   ....+++++.++|+|||.+ ++......         .+.   .++.+.++ ..||.+..+..
T Consensus       249 ~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~g~~~~~~~~  308 (373)
T 2qm3_A          249 PPETLE---AIRAFVGRGIATLKGPRCAGYFGITRRE---------SSLDKWREIQKLLLNEFNVVITDIIR  308 (373)
T ss_dssp             CCSSHH---HHHHHHHHHHHTBCSTTCEEEEEECTTT---------CCHHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred             CCCchH---HHHHHHHHHHHHcccCCeEEEEEEecCc---------CCHHHHHHHHHHHHHhcCcchhhhhh
Confidence            876543   2478899999999999954 44443210         144   67778888 88998866544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.47  E-value=1.6e-14  Score=118.23  Aligned_cols=147  Identities=13%  Similarity=0.079  Sum_probs=95.0

Q ss_pred             HHHHHHhcCC--CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC--CcceEEEE-cccCCCC
Q 024021           97 IIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLK-ADFFTWC  170 (274)
Q Consensus        97 ~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~-~d~~~~~  170 (274)
                      .+...+....  .++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++.+....  ..++.+.. .|+..  
T Consensus        24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--  101 (232)
T 3opn_A           24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--  101 (232)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--
T ss_pred             HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--
Confidence            3445554432  3457999999999999999988875 999999999999998876532110  01122222 22211  


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------CCCC-----CcccCHHHHHHHHhcC
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------VGGP-----PYKVSVSDYEEVLQPM  239 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~l~~~  239 (274)
                        ..||.+.+..++..+     ..++.++.++|+|||.+++...+....      ..|.     .+..+.+++.++++++
T Consensus       102 --~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~a  174 (232)
T 3opn_A          102 --GRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQL  174 (232)
T ss_dssp             --CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHC
Confidence              124555554444444     467899999999999999864211100      0111     0123678999999999


Q ss_pred             CCcEEEEeecccc
Q 024021          240 GFQAISIVDNKLA  252 (274)
Q Consensus       240 Gf~~~~~~~~~~~  252 (274)
                      ||+++.+...+..
T Consensus       175 Gf~v~~~~~~pi~  187 (232)
T 3opn_A          175 GFSVKGLTFSPIK  187 (232)
T ss_dssp             TEEEEEEEECSSC
T ss_pred             CCEEEEEEEccCC
Confidence            9999988775443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.47  E-value=3e-13  Score=116.77  Aligned_cols=122  Identities=9%  Similarity=-0.039  Sum_probs=98.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++.. ++.+.+|+++|+++.+++.|++++..++..++++++.+|+.+..  ++||+|++......
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~~  270 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKFA  270 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTTG
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHhH
Confidence            3568999999999999999 88666999999999999999999998887678999999998865  78999998654322


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CCcEEEEee
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GFQAISIVD  248 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~~~~~~  248 (274)
                            ..++..+.++|+|||.+++.++...           .+.+.+.++++ ||.++.+..
T Consensus       271 ------~~~l~~~~~~L~~gG~l~~~~~~~~-----------~~~~~~~l~~~~~~~i~~~~~  316 (336)
T 2yx1_A          271 ------HKFIDKALDIVEEGGVIHYYTIGKD-----------FDKAIKLFEKKCDCEVLEKRI  316 (336)
T ss_dssp             ------GGGHHHHHHHEEEEEEEEEEEEESS-----------SHHHHHHHHHHSEEEEEEEEE
T ss_pred             ------HHHHHHHHHHcCCCCEEEEEEeecC-----------chHHHHHHHHhcCCcEEEEEE
Confidence                  2578889999999999998776542           34555666666 777655444

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.46  E-value=1.2e-13  Score=113.47  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--------CCCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~  175 (274)
                      .++.+|||+|||+|..+..+++  + +.+++++|+++.+++.|++++...+..++++++.+|..+..        ..++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3567999999999999999886  3 78999999999999999999988877778999999987621        14789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|++...     ......+++.+.++|+|||++++..
T Consensus       149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            99997643     2345678999999999999998854

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.46  E-value=5.6e-13  Score=114.01  Aligned_cols=134  Identities=12%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++   .+.+|+++|+++.+++.++++....+.. +++++.+|+.+.. ..++||+|++.
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEe
Confidence            45568999999999999999886   3479999999999999999998876653 6999999998743 35689999985


Q ss_pred             cc------ccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          182 TF------FCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       182 ~~------~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      ..      +...++       .       ....+++.+.++|+|||++++.+.+...       .-..+.+...++..||
T Consensus       195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~-------~Ene~~v~~~l~~~~~  267 (315)
T 1ixk_A          195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-------EENEFVIQWALDNFDV  267 (315)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------GGTHHHHHHHHHHSSE
T ss_pred             CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-------HHhHHHHHHHHhcCCC
Confidence            33      221111       1       1258899999999999999987754321       1145567788899998


Q ss_pred             cEEEEe
Q 024021          242 QAISIV  247 (274)
Q Consensus       242 ~~~~~~  247 (274)
                      +.+.+.
T Consensus       268 ~~~~~~  273 (315)
T 1ixk_A          268 ELLPLK  273 (315)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            877654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.46  E-value=3.1e-13  Score=113.37  Aligned_cols=143  Identities=17%  Similarity=0.096  Sum_probs=103.3

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ...+..++.  ..++.+|||+|||+|..+..+++  .+ .+|+++|+++.+++.++++....+.. +++++.+|+.+...
T Consensus        72 s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~  148 (274)
T 3ajd_A           72 SMIPPIVLN--PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD  148 (274)
T ss_dssp             GGHHHHHHC--CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH
T ss_pred             HHHHHHHhC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch
Confidence            333444443  45668999999999999998886  45 69999999999999999999887654 79999999977432


Q ss_pred             -----CCCeeEEEeccccccc---C------h-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024021          172 -----TELFDLIFDYTFFCAI---E------P-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS  230 (274)
Q Consensus       172 -----~~~~D~v~~~~~~~~~---~------~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~  230 (274)
                           .++||+|++.......   .      .       .....+++.+.++|+|||.+++.+.+....       -+.+
T Consensus       149 ~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~-------ene~  221 (274)
T 3ajd_A          149 YLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVE-------ENEE  221 (274)
T ss_dssp             HHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTT-------SSHH
T ss_pred             hhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChH-------HhHH
Confidence                 5689999987443221   0      0       123578999999999999999887544211       1355


Q ss_pred             HHHHHHhcC-CCcEEEEe
Q 024021          231 DYEEVLQPM-GFQAISIV  247 (274)
Q Consensus       231 ~~~~~l~~~-Gf~~~~~~  247 (274)
                      .+.+.++.+ +|+++.+.
T Consensus       222 ~v~~~l~~~~~~~~~~~~  239 (274)
T 3ajd_A          222 VIKYILQKRNDVELIIIK  239 (274)
T ss_dssp             HHHHHHHHCSSEEEECCC
T ss_pred             HHHHHHHhCCCcEEecCc
Confidence            666777554 56665543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.46  E-value=5.9e-13  Score=107.63  Aligned_cols=135  Identities=14%  Similarity=0.007  Sum_probs=97.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+. .+.+|+++|+++.+++.++++....+  .+..+..+|.....++++||+|++.-++++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            456899999999999999888 77799999999999999999987766  568999999998777789999999988888


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEc-cCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMF-PISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ++.......+ ++.+.|+++|+++.... .......+ ....-...+.+.+.+.++.+.+.
T Consensus       181 LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~g-m~~~Y~~~~e~~~~~~~~~~~~~  239 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGKG-MEANYAAWFEGGLPAEFEIEDKK  239 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBCSEEEEEEECC------------CHHHHHHHHSCTTEEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCcc-hhhHHHHHHHHHhhccchhhhhe
Confidence            8654433444 78889999987766541 11111000 11123466666666654544443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.46  E-value=8.2e-14  Score=128.44  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~  184 (274)
                      .+.+|||||||.|.++..|++.|++|+|+|.++.+++.|+.+....+. .+++|.++++.+.   ..+++||+|+|..++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            457999999999999999999999999999999999999999877653 2699999998773   456789999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      +|++++.....+..+.+.|+++|..++.....
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            99976543344556777788888766655443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.45  E-value=6.5e-13  Score=108.04  Aligned_cols=102  Identities=21%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCC-CCCCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTW-CPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~-~~~~~~D~  177 (274)
                      ..++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++....+.    ..++++..+|+... ...++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            345689999999999999988863   36999999999999999998866432    24799999998763 33568999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      |++..++.++.        +.+.++|+|||++++...+
T Consensus       155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            99998887663        5788999999999997743

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.45  E-value=1.2e-13  Score=113.61  Aligned_cols=102  Identities=19%  Similarity=0.101  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------------
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------------  171 (274)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.+..+            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence            35689999999999999999873   679999999999999999998877766679999999865211            


Q ss_pred             -----C-CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          172 -----T-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -----~-~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                           . ++||+|++.....     ....+++.+.++|+|||++++..
T Consensus       139 ~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEEc
Confidence                 2 6899999875433     34578899999999999999865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.45  E-value=2.6e-13  Score=110.47  Aligned_cols=102  Identities=25%  Similarity=0.286  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-------CeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCC-----
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTW-----  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-------~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~-----  169 (274)
                      ..++.+|||+|||+|..+..+++..       .+|+++|+++.+++.|+++....+.    ..+++++.+|+.+.     
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            3456899999999999999888733       4999999999999999999876542    35799999999874     


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      ...++||+|++...++++.        +.+.++|+|||++++....
T Consensus       158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence            3456899999998887653        6788999999999987743

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.45  E-value=4.9e-13  Score=112.08  Aligned_cols=105  Identities=16%  Similarity=0.007  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..++.+|||+|||+|.++..+++.  +.+|+++|+++.+++.|++++..++.. ++.++.+|+.+....++||+|++..+
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCccCCceEEEECCc
Confidence            345679999999999999999884  449999999999999999999887764 58899999988622468999998876


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      ..      ...++..+.+.|+|||++++.++...
T Consensus       196 ~~------~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          196 HK------THKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             SS------GGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             cc------HHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence            52      23567889999999999999886553

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.45  E-value=7e-13  Score=117.25  Aligned_cols=114  Identities=21%  Similarity=0.143  Sum_probs=86.9

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHH-------HHHhhcCCCC-cceEEEEcc
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKA-------EELSSSLPNA-KFVSFLKAD  165 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a-------~~~~~~~~~~-~~~~~~~~d  165 (274)
                      .+..++.... .++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.|       ++++...++. .+++++.+|
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            3445555443 35679999999999999999872 3 4899999999999999       8887776643 579999876


Q ss_pred             cCC-C--C--CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          166 FFT-W--C--PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       166 ~~~-~--~--~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ... .  .  ..++||+|+++.++.  . +....++.++.++|+|||++++..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEee
Confidence            542 1  1  246899999876652  2 455678899999999999999864

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.45  E-value=1.7e-13  Score=115.21  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC-C-CCcceEEEEcccCCC-CCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL-P-NAKFVSFLKADFFTW-CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~-~~~~~~D~v~~  180 (274)
                      .++.+|||+|||+|.++..+++   ++.+++++|+++.+++.|+++.... + ..+++++..+|+.+. .+.++||+|++
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence            4567999999999999998887   3679999999999999999998655 3 346799999999874 44678999997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc-CCCcEEEEe
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP-MGFQAISIV  247 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gf~~~~~~  247 (274)
                      ...       ....+++.+.++|+|||.+++......          ...++.+.++. .||..+++.
T Consensus       178 ~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~----------~~~~~~~~l~~~~~f~~~~~~  228 (280)
T 1i9g_A          178 DML-------APWEVLDAVSRLLVAGGVLMVYVATVT----------QLSRIVEALRAKQCWTEPRAW  228 (280)
T ss_dssp             ESS-------CGGGGHHHHHHHEEEEEEEEEEESSHH----------HHHHHHHHHHHHSSBCCCEEE
T ss_pred             CCc-------CHHHHHHHHHHhCCCCCEEEEEeCCHH----------HHHHHHHHHHhcCCcCCcEEE
Confidence            322       113678999999999999999874221          34456666666 788765544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.44  E-value=3.9e-13  Score=118.64  Aligned_cols=136  Identities=17%  Similarity=0.009  Sum_probs=101.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----CCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~-----~~~~D~v~  179 (274)
                      .++.+|||+|||+|.++..++..|+ +|+++|+++.+++.|++++..++. .++++++.+|+.+..+     .++||+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            4568999999999999999998765 999999999999999999988876 5589999999987432     46899999


Q ss_pred             ecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          180 DYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       180 ~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +..+.....       ......++..+.+.|+|||++++.+.+....     .....+.+.+.+..+|+....+.
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~i~  368 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-----SDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-----HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-----HHHHHHHHHHHHHHcCCeEEEEE
Confidence            976542211       0345678899999999999999987544211     00013344456777786655443

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.44  E-value=2e-13  Score=111.31  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----C---CCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----T---ELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~---~~~D  176 (274)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|++++...+..++++++.+|+.+..+    .   ++||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            45689999999999999999873   679999999999999999999887776789999999865211    1   6899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|++....     .....+++.+.++|+|||.+++...
T Consensus       148 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          148 VAVVDADK-----ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEECSCS-----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEECCCH-----HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99986542     2345788999999999999998653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.44  E-value=5.4e-13  Score=117.76  Aligned_cols=140  Identities=17%  Similarity=0.024  Sum_probs=103.8

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----C
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----T  172 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~  172 (274)
                      ..++.....++.+|||+|||+|.++..++..|. +|+++|+++.+++.|++++..++..++++++.+|+.+..+     .
T Consensus       208 ~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~  287 (396)
T 2as0_A          208 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG  287 (396)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhC
Confidence            344443333678999999999999999998765 9999999999999999999888775589999999987322     5


Q ss_pred             CCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH----HHHHHHhcCCC
Q 024021          173 ELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS----DYEEVLQPMGF  241 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~Gf  241 (274)
                      ++||+|++.........       .....++..+.++|+|||.+++.+....         .+.+    .+.+.+...|.
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~---------~~~~~~~~~v~~~~~~~~~  358 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH---------VDLQMFKDMIIAAGAKAGK  358 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT---------SCHHHHHHHHHHHHHHTTE
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC---------CCHHHHHHHHHHHHHHcCC
Confidence            68999999765433221       3456788999999999999988875442         1233    34445566676


Q ss_pred             cEEEEe
Q 024021          242 QAISIV  247 (274)
Q Consensus       242 ~~~~~~  247 (274)
                      ....+.
T Consensus       359 ~~~~i~  364 (396)
T 2as0_A          359 FLKMLE  364 (396)
T ss_dssp             EEEESS
T ss_pred             eEEEEe
Confidence            654444

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.44  E-value=1.6e-13  Score=112.28  Aligned_cols=102  Identities=18%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCC--CCeeE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPT--ELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~--~~~D~  177 (274)
                      ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.|+++....+..++++++.+|+.+.     ...  ++||+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            4679999999999999999873   6799999999999999999987776667899999997652     112  68999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |++....     .....+++.+.++|+|||++++.+.
T Consensus       152 V~~d~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          152 IFIDADK-----RNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEECSCG-----GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             EEECCCH-----HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            9976542     3446789999999999999998654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.43  E-value=1.2e-12  Score=110.29  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=94.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|..+..+++.  +.+++++|+++.+++.|+++++..+  . .++++++.+|..+.  ...++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            4579999999999999999873  4699999999999999999886532  1 36799999998763  22578999998


Q ss_pred             cccccccChhHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      .......+....  ..+++.+.++|+|||++++...+....      ......+.+.+++. |..+..
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~~~~~l~~~-F~~v~~  218 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH------VGTIKNMIGYAKKL-FKKVEY  218 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTC------HHHHHHHHHHHHTT-CSEEEE
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccC------HHHHHHHHHHHHHH-CCceEE
Confidence            654332222222  588999999999999999875321100      01234555666664 665544

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.43  E-value=9e-13  Score=108.79  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC--------CCCcceEEEEcccCCC----CCCC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL--------PNAKFVSFLKADFFTW----CPTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~----~~~~  173 (274)
                      ++.+|||+|||+|.++..+++  ++..|+|+|+++.+++.+++++...        +. .++.++.+|+.+.    .+.+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence            457999999999999999987  4568999999999999999887543        33 4799999999872    3467


Q ss_pred             CeeEEEecccccccChh------HHHHHHHHHHhcccCCcEEEEEE
Q 024021          174 LFDLIFDYTFFCAIEPE------MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+|.|+....-......      ....++..+.++|+|||.+++.+
T Consensus       128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            89999854321111000      00378999999999999999865

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.43  E-value=6.5e-13  Score=113.79  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=94.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...  +. .++++++.+|+.+.  ...++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4579999999999999999874  569999999999999999998652  12 35799999998763  23568999998


Q ss_pred             cccccccChhHH--HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ...-..-+....  ..+++.+.++|+|||++++...+...      ......++.+.+++. |..+...
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~------~~~~~~~~~~~l~~~-F~~v~~~  257 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWI------HVGTIKNMIGYAKKL-FKKVEYA  257 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTT------CHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc------CHHHHHHHHHHHHHH-CCCeEEE
Confidence            653211111111  57899999999999999987532210      001245566666665 5555443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.43  E-value=1.7e-13  Score=118.69  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC---C----CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP---E----RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~---~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~  180 (274)
                      ++.+|||+|||+|.++..+++.   .    .+++|+|+++.+++.|+.+....+.  ++.+..+|.....+.++||+|++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccccCCccEEEE
Confidence            4579999999999999888762   1    6899999999999999999876654  58999999988666678999999


Q ss_pred             cccccccChhHH----------------HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          181 YTFFCAIEPEMR----------------AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       181 ~~~~~~~~~~~~----------------~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      +.++++++.+..                ..++.++.+.|+|||+++++.......  +    -...++.+++.+.|+..
T Consensus       208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~--~----~~~~~ir~~l~~~~~~~  280 (344)
T 2f8l_A          208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG--T----SDFAKVDKFIKKNGHIE  280 (344)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG--S----TTHHHHHHHHHHHEEEE
T ss_pred             CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcC--C----chHHHHHHHHHhCCeEE
Confidence            999877643321                258999999999999988877432111  1    13578888888877644

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.42  E-value=8.6e-13  Score=110.70  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=95.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      .+.+|||+|||+|..+..+++. + .+|+++|+++.+++.|+++++..  +. .++++++.+|..+.  ...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4689999999999999999874 4 59999999999999999987431  12 36899999998762  23578999999


Q ss_pred             cccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          181 YTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       181 ~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      .......+..  ....+++.+.++|+|||++++...+...      ..-....+.+.+++. |..+...
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~------~~~~~~~~~~~l~~~-F~~v~~~  216 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF------TPELITNVQRDVKEI-FPITKLY  216 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT------CHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc------cHHHHHHHHHHHHHh-CCCeEEE
Confidence            6554322111  1246889999999999999887522110      011245666777776 6665543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.42  E-value=2.5e-13  Score=110.67  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC-CC-------CeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCCCCC-
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS-PE-------RYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWCPT-  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~-~~-------~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~-  172 (274)
                      ..++.+|||+|||+|..+..+++ .+       .+|+++|+++.+++.|+++....+.    ..++++..+|..+..+. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            34567999999999999998887 23       5999999999999999998765321    14699999999874443 


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      ++||+|++...+++++        +.+.+.|+|||++++....
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEec
Confidence            6899999999988774        5688999999999998753

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.42  E-value=2e-12  Score=113.49  Aligned_cols=140  Identities=11%  Similarity=0.002  Sum_probs=100.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCe
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~  175 (274)
                      ...++.....++.+|||+|||+|.++..++..|+.|+++|+|+.+++.|++++..++..  ..+..+|+.+..  ..+.|
T Consensus       204 ~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~f  281 (393)
T 4dmg_A          204 NRRLFEAMVRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPF  281 (393)
T ss_dssp             HHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCE
T ss_pred             HHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCC
Confidence            34444444445789999999999999999998888999999999999999999887764  356689988732  13349


Q ss_pred             eEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH----HHHHHHHhcCCCcEE
Q 024021          176 DLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV----SDYEEVLQPMGFQAI  244 (274)
Q Consensus       176 D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~Gf~~~  244 (274)
                      |+|++......-..       .....++..+.++|+|||.+++......         .+.    +.+.+.+..+|....
T Consensus       282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~---------~~~~~f~~~v~~a~~~~g~~~~  352 (393)
T 4dmg_A          282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH---------LRLEDLLEVARRAAADLGRRLR  352 (393)
T ss_dssp             EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT---------SCHHHHHHHHHHHHHHHTCCEE
T ss_pred             CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC---------CCHHHHHHHHHHHHHHhCCeEE
Confidence            99998765422111       2345788999999999999997765432         133    344455566676655


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+..
T Consensus       353 i~~~  356 (393)
T 4dmg_A          353 VHRV  356 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.42  E-value=8.5e-13  Score=115.92  Aligned_cols=141  Identities=21%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             HHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CC
Q 024021           99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TE  173 (274)
Q Consensus        99 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~  173 (274)
                      ..++...  ++.+|||+|||+|.++..++..+.+|+++|+++.+++.|++++..++..+ ++++.+|+.+..+     .+
T Consensus       202 ~~~~~~~--~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~  278 (382)
T 1wxx_A          202 RLYMERF--RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGE  278 (382)
T ss_dssp             HHHGGGC--CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTC
T ss_pred             HHHHHhc--CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCC
Confidence            3344443  56799999999999999998776699999999999999999998887654 9999999987432     56


Q ss_pred             CeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          174 LFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +||+|++.......+.       .....++..+.++|+|||.+++.+.+....     ...-.+.+.+.+..+|.....+
T Consensus       279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~i~~~~~~~g~~~~~i  353 (382)
T 1wxx_A          279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-----EPLFYAMVAEAAQDAHRLLRVV  353 (382)
T ss_dssp             CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-----HHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHcCCeEEEE
Confidence            8999998765432221       334678899999999999999987544211     0001234455677777655444


Q ss_pred             e
Q 024021          247 V  247 (274)
Q Consensus       247 ~  247 (274)
                      .
T Consensus       354 ~  354 (382)
T 1wxx_A          354 E  354 (382)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.42  E-value=6.1e-13  Score=103.44  Aligned_cols=118  Identities=13%  Similarity=0.159  Sum_probs=91.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~  174 (274)
                      .++.+|||+|||+|.++..+++.   +.+++++|+++ ++..           .++++..+|+.+.         .+.++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            45679999999999999988773   57999999998 6422           4689999999874         55678


Q ss_pred             eeEEEecccccccChh---H------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFCAIEPE---M------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~---~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ||+|+++.++++....   .      ...+++.+.++|+|||.+++..+...          ...++.+.++.. |..+.
T Consensus        89 ~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------~~~~~~~~~~~~-~~~~~  157 (180)
T 1ej0_A           89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRSL-FTKVK  157 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------THHHHHHHHHHH-EEEEE
T ss_pred             eeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC----------cHHHHHHHHHHh-hhhEE
Confidence            9999998887765322   1      15789999999999999998775442          456777777774 77666


Q ss_pred             Ee
Q 024021          246 IV  247 (274)
Q Consensus       246 ~~  247 (274)
                      +.
T Consensus       158 ~~  159 (180)
T 1ej0_A          158 VR  159 (180)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.41  E-value=4.5e-13  Score=125.94  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=103.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC--CCCCCeeEEEecc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~--~~~~~~D~v~~~~  182 (274)
                      .++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.|++++..+++. ++++++.+|+.+.  ...++||+|++..
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            3578999999999999999988777 6999999999999999999988876 5899999999873  2346899999976


Q ss_pred             cccc--------cC-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          183 FFCA--------IE-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       183 ~~~~--------~~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      ....        +. ......++..+.++|+|||++++.+....       +...    .+.++..||+...+.....
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~-------~~~~----~~~l~~~g~~~~~i~~~~l  684 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG-------FRMD----LDGLAKLGLKAQEITQKTL  684 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT-------CCCC----HHHHHHTTEEEEECTTTTC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-------cccC----HHHHHHcCCceeeeeeccC
Confidence            5321        11 13456788999999999999998774321       1112    4567788988666655443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.41  E-value=3.1e-12  Score=114.11  Aligned_cols=142  Identities=18%  Similarity=0.176  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~  181 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++.. +++|+.+|+.+..     ..++||+|+++
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            34579999999999999999998889999999999999999999877664 7999999998732     23579999987


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      .......     .+++.+.+ ++|++++++.+.+.           +...-...+.+.||.+..+...+. ++.-...|.
T Consensus       364 PPr~g~~-----~~~~~l~~-~~p~~ivyvsc~p~-----------tlard~~~l~~~Gy~~~~~~~~d~-Fp~t~HvE~  425 (433)
T 1uwv_A          364 PARAGAA-----GVMQQIIK-LEPIRIVYVSCNPA-----------TLARDSEALLKAGYTIARLAMLDM-FPHTGHLES  425 (433)
T ss_dssp             CCTTCCH-----HHHHHHHH-HCCSEEEEEESCHH-----------HHHHHHHHHHHTTCEEEEEEEECC-STTSSCCEE
T ss_pred             CCCccHH-----HHHHHHHh-cCCCeEEEEECChH-----------HHHhhHHHHHHCCcEEEEEEEecc-CCCCCeEEE
Confidence            7665441     34455544 78999888876222           333445667778999988766432 333334565


Q ss_pred             HHHhhh
Q 024021          262 LGRWKR  267 (274)
Q Consensus       262 ~~~~~~  267 (274)
                      +.++.|
T Consensus       426 v~ll~r  431 (433)
T 1uwv_A          426 MVLFSR  431 (433)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            555543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.40  E-value=7.9e-13  Score=111.31  Aligned_cols=106  Identities=20%  Similarity=0.184  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcC--C--------CCcceEEEEcccCCCCC-CCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSL--P--------NAKFVSFLKADFFTWCP-TEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~--------~~~~~~~~~~d~~~~~~-~~~  174 (274)
                      ..+.+|||+|||+|..+..+++. ..+++++|+++.+++.|++++ ..  +        ..++++++.+|..+... .++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            34579999999999999999875 459999999999999999988 32  2        13679999999866211 578


Q ss_pred             eeEEEecccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ||+|++......-+...  ...+++.+.++|+|||++++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            99999866532211122  2578999999999999998865

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.40  E-value=3.4e-12  Score=101.76  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------  170 (274)
                      .++.+|||+|||+|.++..+++  +  +.+|+|+|+++.+         .   ..+++++.+|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~---~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P---IPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C---CTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C---CCCceEEEccccchhhhhhcccccccc
Confidence            3557999999999999999987  2  5799999999831         1   146899999998743            


Q ss_pred             --------------CCCCeeEEEecccccccC---hhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc
Q 024021          171 --------------PTELFDLIFDYTFFCAIE---PEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV  227 (274)
Q Consensus       171 --------------~~~~~D~v~~~~~~~~~~---~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~  227 (274)
                                    +.++||+|++...+++..   .+.      ...++..+.++|+|||.+++..+...          
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------  158 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS----------  158 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST----------
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC----------
Confidence                          456899999987766531   111      12478899999999999998665331          


Q ss_pred             CHHHHHHHHhcCCCcEEEE
Q 024021          228 SVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       228 ~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ...++.+.++. .|..+.+
T Consensus       159 ~~~~l~~~l~~-~f~~v~~  176 (201)
T 2plw_A          159 QTNNLKTYLKG-MFQLVHT  176 (201)
T ss_dssp             THHHHHHHHHT-TEEEEEE
T ss_pred             CHHHHHHHHHH-HHheEEE
Confidence            45677777776 4665554

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.40  E-value=4.2e-12  Score=100.76  Aligned_cols=119  Identities=13%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------C----CC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------T----EL  174 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~----~~  174 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++..         .   ..+++++++|+.+...        .    ++
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~---~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------E---IAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------C---CTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------c---CCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            456899999999999999999988899999999741         1   1469999999987321        1    48


Q ss_pred             eeEEEecccccccC---h------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          175 FDLIFDYTFFCAIE---P------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       175 ~D~v~~~~~~~~~~---~------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ||+|++........   .      .....+++.+.++|+|||.+++..+...          ...++.+.++. .|..+.
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~----------~~~~~~~~l~~-~F~~v~  160 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD----------MTNDFIAIWRK-NFSSYK  160 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST----------HHHHHHHHHGG-GEEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC----------CHHHHHHHHHH-hcCEEE
Confidence            99999976433211   0      1235678889999999999998776442          34677777866 477766


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       161 ~~k  163 (191)
T 3dou_A          161 ISK  163 (191)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            544

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.40  E-value=1.8e-12  Score=111.91  Aligned_cols=103  Identities=16%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCC-C--CeEEEEeCChHHHHHHHHHhhcC-------C---CCcceEEEEcccCCC---
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASP-E--RYVVGLEISDIAIKKAEELSSSL-------P---NAKFVSFLKADFFTW---  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~-------~---~~~~~~~~~~d~~~~---  169 (274)
                      ..++.+|||+|||+|.++..+++. |  .+|+++|+++.+++.|+++....       +   ...++++..+|+.+.   
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            456689999999999999998873 3  79999999999999999988642       1   225799999999874   


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      .+.++||+|++...-.       ..++..+.++|+|||.+++....
T Consensus       183 ~~~~~fD~V~~~~~~~-------~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          183 IKSLTFDAVALDMLNP-------HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             -----EEEEEECSSST-------TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             cCCCCeeEEEECCCCH-------HHHHHHHHHhcCCCcEEEEEeCC
Confidence            2346799999854321       13678999999999999987643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.40  E-value=1.9e-12  Score=110.69  Aligned_cols=133  Identities=13%  Similarity=0.077  Sum_probs=95.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CC-C-CcceEEEEcccCCC--CCCCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LP-N-AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~-~-~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      .+.+|||+|||+|..+..+++.  +.+++++|+++.+++.|++++..  .+ . .++++++.+|+.+.  ...++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            4579999999999999999874  56999999999999999998754  11 1 36799999999773  2357899999


Q ss_pred             ecccccc---cChhH--HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          180 DYTFFCA---IEPEM--RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       180 ~~~~~~~---~~~~~--~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +....+.   -+...  ...+++.+.++|+|||++++........  .   .-....+.+.+++. |..+..
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--~---~~~~~~~~~~l~~~-F~~v~~  222 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT--H---HRVHPVVHRTVREA-FRYVRS  222 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC--------CHHHHHHHHHHTT-CSEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcccc--C---HHHHHHHHHHHHHH-CCceEE
Confidence            9765543   11111  3678999999999999999865332100  0   01345666777765 554443

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=1.3e-12  Score=110.92  Aligned_cols=104  Identities=18%  Similarity=0.080  Sum_probs=83.4

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~  184 (274)
                      .+|||||||+|..+..+++  ++.+++++|+++.+++.|++++... ..++++++.+|..+.   .+.++||+|++....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            4999999999999999987  6779999999999999999998653 236899999999873   235789999986443


Q ss_pred             cccChhH--HHHHHHHHHhcccCCcEEEEEEc
Q 024021          185 CAIEPEM--RAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       185 ~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ....+..  ...+++.+.++|+|||++++...
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            3211111  25789999999999999988764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.39  E-value=9.2e-13  Score=112.41  Aligned_cols=106  Identities=21%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      .+.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|+++++..  +. .++++++.+|+.+.  ...++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4579999999999999999873  569999999999999999998653  22 36899999998763  24578999998


Q ss_pred             cccccccChhHH--HHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMR--AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~--~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...-..-+....  ..+++.+.++|+|||++++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            654221111111  688999999999999999865

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.39  E-value=1.5e-12  Score=110.35  Aligned_cols=132  Identities=14%  Similarity=0.025  Sum_probs=91.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CCC-CcceEEEEcccCCC--CCCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~--~~~~~~D~v~~  180 (274)
                      .+.+|||+|||+|..+..+++.  ..+|+++|+++.+++.|++++..  .+. .++++++.+|+.+.  ...++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999874  46999999999999999998753  112 35799999998762  23568999998


Q ss_pred             cccccccCh-h--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          181 YTFFCAIEP-E--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       181 ~~~~~~~~~-~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ...-....+ .  ....+++.+.++|+|||++++...+...      .......+.+.+++. |..+..
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~------~~~~~~~~~~~l~~~-F~~v~~  231 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY------DIGWFKLAYRRISKV-FPITRV  231 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTT------THHHHHHHHHHHHHH-CSEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCccc------CHHHHHHHHHHHHHH-CCceEE
Confidence            543220111 1  1257889999999999999986522110      011234556666665 555554

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.38  E-value=1.4e-12  Score=110.94  Aligned_cols=107  Identities=21%  Similarity=0.213  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhc--CCC-CcceEEEEcccCCC--CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSS--LPN-AKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      ..+.+|||+|||+|..+..+++.  ..+++++|+++.+++.|++++..  .+. .++++++.+|..+.  ...++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            34579999999999999999874  46999999999999999998754  222 36799999998762  2357899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.......+..  ....+++.+.++|+|||++++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            86543221111  23568999999999999999865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.38  E-value=1.6e-12  Score=111.72  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCCC---CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~---~~~~~~D~v  178 (274)
                      ..+.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.   .+.++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            34579999999999999999874  569999999999999999987541  22 25799999998763   235689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++...-..-+..  ....+++.+.++|+|||++++..
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            986542111111  13678999999999999999864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=1.7e-12  Score=109.49  Aligned_cols=112  Identities=20%  Similarity=0.188  Sum_probs=83.2

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      .+..++.... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+..++++++.+|+.+... ..|
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~-~~f   94 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL-PFF   94 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC-CCC
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc-hhh
Confidence            3444444443 35579999999999999999988889999999999999999998766544689999999987433 379


Q ss_pred             eEEEecccccccChhHHHHHHH--------------HH--HhcccCCcEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQ--------------KI--KDFLKPDGELI  210 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~--------------~~--~~~L~pgG~~~  210 (274)
                      |+|+++.+++..+ +....+++              ++  +.+++|||.++
T Consensus        95 D~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           95 DTCVANLPYQISS-PFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             SEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cEEEEecCcccch-HHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            9999987766432 22223332              11  35889999764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.35  E-value=2e-11  Score=108.28  Aligned_cols=99  Identities=15%  Similarity=0.043  Sum_probs=81.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++..  ++|+.+|+.+..+. +||+|++......
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~~-~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSVK-GFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCCT-TCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCcc-CCCEEEEcCCccc
Confidence            45679999999999999999988889999999999999999999877653  99999999986544 8999998776544


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.    ..+++.+. .|+|+|++++.+
T Consensus       366 ~~----~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          366 LH----PRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             SC----HHHHHHHH-HHCCSEEEEEES
T ss_pred             hH----HHHHHHHH-hcCCCcEEEEEC
Confidence            43    23445554 489999999876

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.35  E-value=5.4e-13  Score=109.45  Aligned_cols=120  Identities=12%  Similarity=0.019  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---C-CC-CCee
Q 024021          108 PKGRALVPGCGTGYDVVAMASP------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C-PT-ELFD  176 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~-~~-~~~D  176 (274)
                      ++.+|||||||+|..+..+++.      +.+|+++|+++.+++.|+.      ..++++++.+|+.+.   . .. .+||
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD  154 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHP  154 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCC
Confidence            4579999999999999988763      6799999999999888872      125799999999873   1 22 3799


Q ss_pred             EEEecccccccChhHHHHHHHHHHh-cccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKD-FLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAI  244 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Gf~~~  244 (274)
                      +|++...  +.   ....++..+.+ +|+|||++++.+....      ......+.+.++++.+  +|.+.
T Consensus       155 ~I~~d~~--~~---~~~~~l~~~~r~~LkpGG~lv~~d~~~~------~~~~~~~~~~~~l~~~~~~f~~~  214 (236)
T 2bm8_A          155 LIFIDNA--HA---NTFNIMKWAVDHLLEEGDYFIIEDMIPY------WYRYAPQLFSEYLGAFRDVLSMD  214 (236)
T ss_dssp             EEEEESS--CS---SHHHHHHHHHHHTCCTTCEEEECSCHHH------HHHHCHHHHHHHHHTTTTTEEEE
T ss_pred             EEEECCc--hH---hHHHHHHHHHHhhCCCCCEEEEEeCccc------ccccCHHHHHHHHHhCcccEEEc
Confidence            9997654  22   33568899997 9999999999653110      0012456888888888  56654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.34  E-value=1.4e-11  Score=110.30  Aligned_cols=134  Identities=13%  Similarity=0.136  Sum_probs=100.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~D~v~  179 (274)
                      ..++.+|||+|||+|..+..+++  .+ .+|+++|+++.+++.++++....+. .+++++.+|+.+..   +.++||+|+
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEE
Confidence            45567999999999999999887  44 6999999999999999999987765 36999999998743   236799999


Q ss_pred             ecc------cccccChhH--------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024021          180 DYT------FFCAIEPEM--------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       180 ~~~------~~~~~~~~~--------------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (274)
                      +..      ++...++..              ...+++.+.++|+|||.+++.+.+...       .-..+.+..+++.+
T Consensus       336 ~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~-------~ene~~v~~~l~~~  408 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK-------EENEKNIRWFLNVH  408 (450)
T ss_dssp             EECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-------GGTHHHHHHHHHHC
T ss_pred             EcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh-------hhHHHHHHHHHHhC
Confidence            732      232222111              157899999999999999988765421       11355677788887


Q ss_pred             -CCcEEEEe
Q 024021          240 -GFQAISIV  247 (274)
Q Consensus       240 -Gf~~~~~~  247 (274)
                       ||..+.+.
T Consensus       409 ~~~~~~~~~  417 (450)
T 2yxl_A          409 PEFKLVPLK  417 (450)
T ss_dssp             SSCEECCCC
T ss_pred             CCCEEeecc
Confidence             68876543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.33  E-value=5.4e-12  Score=112.63  Aligned_cols=142  Identities=13%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  170 (274)
                      ...+..++.  ..++.+|||+|||+|..+..+++   ....|+++|+++.+++.+++++...+..  +.++.+|..+.. 
T Consensus        90 s~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~  165 (464)
T 3m6w_A           90 AQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE  165 (464)
T ss_dssp             THHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH
T ss_pred             HHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh
Confidence            334444444  45678999999999999998886   2369999999999999999999887764  899999987632 


Q ss_pred             -CCCCeeEEEecccc------cccC-------hh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024021          171 -PTELFDLIFDYTFF------CAIE-------PE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       171 -~~~~~D~v~~~~~~------~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                       ..++||+|++....      ..-+       ++       ....+++.+.++|+|||+++..+.+...       .-+.
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~-------eEne  238 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP-------EENE  238 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-------GGTH
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch-------hcCH
Confidence             35789999964332      1111       11       1267899999999999999987754421       1246


Q ss_pred             HHHHHHHhcC-CCcEEEEe
Q 024021          230 SDYEEVLQPM-GFQAISIV  247 (274)
Q Consensus       230 ~~~~~~l~~~-Gf~~~~~~  247 (274)
                      +.+..+++.+ +|+++.+.
T Consensus       239 ~vv~~~l~~~~~~~l~~~~  257 (464)
T 3m6w_A          239 GVVAHFLKAHPEFRLEDAR  257 (464)
T ss_dssp             HHHHHHHHHCTTEEEECCC
T ss_pred             HHHHHHHHHCCCcEEEecc
Confidence            6777778877 58776654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.32  E-value=3.7e-12  Score=110.56  Aligned_cols=108  Identities=17%  Similarity=0.109  Sum_probs=82.5

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCC------cchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024021           95 APIIVHLHQSGALPKGRALVPGCG------TGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD  165 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d  165 (274)
                      ......++.....++.+|||||||      +|..+..+++   ++.+|+|+|+++.+.      .    ..++++|+++|
T Consensus       203 ~~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~----~~~rI~fv~GD  272 (419)
T 3sso_A          203 TPHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V----DELRIRTIQGD  272 (419)
T ss_dssp             HHHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G----CBTTEEEEECC
T ss_pred             HHHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h----cCCCcEEEEec
Confidence            455666666555567899999999      7766666654   578999999999872      1    12579999999


Q ss_pred             cCCC-CC------CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          166 FFTW-CP------TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       166 ~~~~-~~------~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +.+. ..      .++||+|++... +++  .+...+++++.++|||||++++.+..
T Consensus       273 a~dlpf~~~l~~~d~sFDlVisdgs-H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          273 QNDAEFLDRIARRYGPFDIVIDDGS-HIN--AHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             TTCHHHHHHHHHHHCCEEEEEECSC-CCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ccccchhhhhhcccCCccEEEECCc-ccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9883 22      478999998754 333  45678899999999999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.31  E-value=7.1e-12  Score=111.70  Aligned_cols=143  Identities=15%  Similarity=0.044  Sum_probs=105.6

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-  170 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  170 (274)
                      ...+..++.  ..++.+|||+|||+|..+..++.   ....|+++|+++.+++.+++++...+.. ++.++.+|..... 
T Consensus        94 s~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~  170 (456)
T 3m4x_A           94 AMIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP  170 (456)
T ss_dssp             THHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH
T ss_pred             HHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh
Confidence            334444444  45678999999999999998876   3469999999999999999999887764 6999999987632 


Q ss_pred             -CCCCeeEEEecccc---ccc--Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024021          171 -PTELFDLIFDYTFF---CAI--EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       171 -~~~~~D~v~~~~~~---~~~--~~~---------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                       ..+.||+|++....   ..+  +++               ....+++.+.++|+|||+++..+.+...       .-+.
T Consensus       171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~-------eEne  243 (456)
T 3m4x_A          171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP-------EENE  243 (456)
T ss_dssp             HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG-------GGTH
T ss_pred             hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc-------ccCH
Confidence             35789999986442   111  111               1237899999999999999987754421       1256


Q ss_pred             HHHHHHHhcCCCcEEEEe
Q 024021          230 SDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~~~~  247 (274)
                      +.+..+++.+||+++.+.
T Consensus       244 ~vv~~~l~~~~~~l~~~~  261 (456)
T 3m4x_A          244 EIISWLVENYPVTIEEIP  261 (456)
T ss_dssp             HHHHHHHHHSSEEEECCC
T ss_pred             HHHHHHHHhCCCEEEecc
Confidence            778888999887776654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.30  E-value=4.7e-12  Score=110.63  Aligned_cols=144  Identities=12%  Similarity=0.028  Sum_probs=98.6

Q ss_pred             HHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC-----
Q 024021          101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT-----  172 (274)
Q Consensus       101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~-----  172 (274)
                      +++.....+.+|||+|||+|.++..+++...+|+++|+++.+++.|+++...++. ++++|+.+|+.+..   ..     
T Consensus       206 ~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          206 ALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             HHHHTTTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCT
T ss_pred             HHHHhhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhccccc
Confidence            3343344467899999999999999998777999999999999999999988876 47999999987621   11     


Q ss_pred             ---------CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          173 ---------ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       173 ---------~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                               .+||+|++......+.        ..+.+.|+++|.++.+..++.        . -..++.. +.. ||.+
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g~~--------~~~~~~l~~~g~ivyvsc~p~--------t-~ard~~~-l~~-~y~~  345 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSGLD--------SETEKMVQAYPRILYISCNPE--------T-LCKNLET-LSQ-THKV  345 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTCCC--------HHHHHHHTTSSEEEEEESCHH--------H-HHHHHHH-HHH-HEEE
T ss_pred             cccccccccCCCCEEEECcCccccH--------HHHHHHHhCCCEEEEEECCHH--------H-HHHHHHH-Hhh-CcEE
Confidence                     3799999765543332        345555668888777664321        0 1233333 333 7988


Q ss_pred             EEEeecccccCCccchhHHHHh
Q 024021          244 ISIVDNKLAIGPRKGREKLGRW  265 (274)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~  265 (274)
                      ..+...+. ++.-...|.+.++
T Consensus       346 ~~~~~~D~-FP~T~HvE~v~ll  366 (369)
T 3bt7_A          346 ERLALFDQ-FPYTHHMQCGVLL  366 (369)
T ss_dssp             EEEEEECC-STTSSCCEEEEEE
T ss_pred             EEEEeecc-CCCCCcEEEEEEE
Confidence            88776543 3333445555444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.28  E-value=1.2e-11  Score=109.85  Aligned_cols=132  Identities=25%  Similarity=0.364  Sum_probs=96.7

Q ss_pred             ccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024021           94 PAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus        94 ~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  169 (274)
                      +......++.... .++.+|||+|||+|.++..+++   .+.+++|+|+++.+++.|          .+++++.+|+...
T Consensus        24 P~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~   93 (421)
T 2ih2_A           24 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLW   93 (421)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhc
Confidence            3444444554443 2457999999999999999886   457999999999988766          3589999999887


Q ss_pred             CCCCCeeEEEecccccccC----------hhHH-----------------HHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024021          170 CPTELFDLIFDYTFFCAIE----------PEMR-----------------AAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~----------~~~~-----------------~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~  222 (274)
                      .+.++||+|+++.++....          ++..                 ..+++.+.++|+|||.++++.......   
T Consensus        94 ~~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~---  170 (421)
T 2ih2_A           94 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV---  170 (421)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT---
T ss_pred             CccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhc---
Confidence            6667899999987764321          2221                 256899999999999988877432100   


Q ss_pred             CCcccCHHHHHHHHhcCCC
Q 024021          223 PPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       223 ~~~~~~~~~~~~~l~~~Gf  241 (274)
                         ....+.+++.+.+.|+
T Consensus       171 ---~~~~~~lr~~l~~~~~  186 (421)
T 2ih2_A          171 ---LEDFALLREFLAREGK  186 (421)
T ss_dssp             ---CGGGHHHHHHHHHHSE
T ss_pred             ---CccHHHHHHHHHhcCC
Confidence               1135678888888887

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.28  E-value=2.2e-12  Score=108.10  Aligned_cols=114  Identities=15%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEE--EcccCCCCCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFL--KADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~  173 (274)
                      +..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. .......++.++  .+|+.+.. ++
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~  147 (276)
T 2wa2_A           71 LAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PF  147 (276)
T ss_dssp             HHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CC
T ss_pred             HHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CC
Confidence            44444433 235679999999999999999888 7999999998 533332211 011111268999  89988754 67


Q ss_pred             CeeEEEecccccccCh---hHH--HHHHHHHHhcccCCc--EEEEEEcc
Q 024021          174 LFDLIFDYTFFCAIEP---EMR--AAWAQKIKDFLKPDG--ELITLMFP  215 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~---~~~--~~~l~~~~~~L~pgG--~~~~~~~~  215 (274)
                      +||+|++... +....   +..  ..+++.+.++|+|||  .+++..+.
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            8999999876 33221   111  137899999999999  98887654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.27  E-value=1.8e-11  Score=102.94  Aligned_cols=115  Identities=16%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCc------chhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE-EEcccCCCCCCCCee
Q 024021          107 LPKGRALVPGCGT------GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSF-LKADFFTWCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~------G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~D  176 (274)
                      .++.+|||+|||+      |.  ..+++   .+.+|+|+|+++.        +      .++++ +++|+.+....++||
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v------~~v~~~i~gD~~~~~~~~~fD  125 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V------SDADSTLIGDCATVHTANKWD  125 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B------CSSSEEEESCGGGCCCSSCEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C------CCCEEEEECccccCCccCccc
Confidence            4567999999944      65  22332   3579999999987        1      25888 999998855557899


Q ss_pred             EEEecccccc--------c-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          177 LIFDYTFFCA--------I-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       177 ~v~~~~~~~~--------~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +|+++.....        . .......+++.+.++|+|||.+++..+...          ...++.+.++..||..+.+.
T Consensus       126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------CCHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------CHHHHHHHHHHcCCcEEEEE
Confidence            9999754221        1 012345789999999999999999775432          34588899999999877664

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.27  E-value=3.8e-12  Score=106.07  Aligned_cols=116  Identities=14%  Similarity=0.084  Sum_probs=79.3

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEE--EcccCCCCC
Q 024021           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFL--KADFFTWCP  171 (274)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~  171 (274)
                      ..+..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. .......++.++  ++|+.+.. 
T Consensus        61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-  137 (265)
T 2oxt_A           61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-  137 (265)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-
T ss_pred             HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC-
Confidence            3345555443 335679999999999999999887 7999999998 432221111 000111268999  89998754 


Q ss_pred             CCCeeEEEecccccccChh---HH--HHHHHHHHhcccCCc--EEEEEEcc
Q 024021          172 TELFDLIFDYTFFCAIEPE---MR--AAWAQKIKDFLKPDG--ELITLMFP  215 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~---~~--~~~l~~~~~~L~pgG--~~~~~~~~  215 (274)
                      +++||+|++... ++....   ..  ..+++.+.++|+|||  .+++..+.
T Consensus       138 ~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          138 VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            578999999876 332211   11  137899999999999  98887754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=4.6e-11  Score=101.35  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+. ++++++.+|+.+... ++||+|+++.+++.
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~~~D~Vv~n~py~~  118 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-PKFDVCTANIPYKI  118 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-CCCSEEEEECCGGG
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-ccCCEEEEcCCccc
Confidence            4567999999999999999999888999999999999999998865544 579999999987543 47999999877654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=9.3e-11  Score=105.47  Aligned_cols=125  Identities=15%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~  182 (274)
                      ++.+|||+|||+|..+..+++   .+..|+++|+++.+++.+++++...+.. ++.++.+|.....  ..+.||.|++..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence            678999999999999998887   2469999999999999999999877653 6999999998732  456899999843


Q ss_pred             c------ccc-------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024021          183 F------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG  240 (274)
Q Consensus       183 ~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G  240 (274)
                      .      +..       +.++       ....++..+.++|+|||++++.+.+....       -+.+.+..+++.++
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~-------Ene~vv~~~l~~~~  266 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE-------ENEAVCLWLKETYP  266 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST-------TTHHHHHHHHHHST
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc-------cCHHHHHHHHHHCC
Confidence            2      211       1111       12478899999999999999877544211       13445566666665

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.24  E-value=1.7e-11  Score=102.03  Aligned_cols=97  Identities=14%  Similarity=0.055  Sum_probs=78.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--C-CCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--P-NAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .+.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+++++..  + ..++++++.+|..+..  ++||+|++... 
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~~-  148 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQE-  148 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESSC-
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECCC-
Confidence            4579999999999999988765579999999999999999876431  1 1257999999998755  78999998621 


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                         + +  ..+++.+.++|+|||++++..
T Consensus       149 ---d-p--~~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          149 ---P-D--IHRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             ---C-C--HHHHHHHHTTEEEEEEEEEEE
T ss_pred             ---C-h--HHHHHHHHHhcCCCcEEEEEc
Confidence               1 2  237899999999999998864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.24  E-value=5e-11  Score=94.46  Aligned_cols=117  Identities=22%  Similarity=0.248  Sum_probs=82.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC-C----------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-EcccCCC-----
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP-E----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTW-----  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~-----  169 (274)
                      .++.+|||+|||+|.++..+++. +          .+|+++|+++..           . ..+++++ .+|+...     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~-~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P-LEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C-CTTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c-CCCCeEEEeccCCCHHHHHH
Confidence            45689999999999999999873 3          789999999831           0 1458888 8888762     


Q ss_pred             ----CCCCCeeEEEeccccccc----Chh-----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021          170 ----CPTELFDLIFDYTFFCAI----EPE-----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       170 ----~~~~~~D~v~~~~~~~~~----~~~-----~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (274)
                          .+.++||+|++...++..    .+.     ....+++.+.++|+|||.+++..+...          ...++.+.+
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------~~~~~~~~l  158 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS----------QSRRLQRRL  158 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG----------GGHHHHHHH
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc----------cHHHHHHHH
Confidence                234589999997654431    111     114788999999999999999875432          345666666


Q ss_pred             hcCCCcEEEE
Q 024021          237 QPMGFQAISI  246 (274)
Q Consensus       237 ~~~Gf~~~~~  246 (274)
                      +.. |..+..
T Consensus       159 ~~~-f~~v~~  167 (196)
T 2nyu_A          159 TEE-FQNVRI  167 (196)
T ss_dssp             HHH-EEEEEE
T ss_pred             HHH-hcceEE
Confidence            653 655444

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.23  E-value=1.1e-10  Score=103.92  Aligned_cols=131  Identities=15%  Similarity=0.101  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~D~v~~  180 (274)
                      ..++.+|||+|||+|..+..+++  .+.+|+++|+++.+++.++++....+.  ++.++.+|+.+.   .+.++||+|++
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEE
Confidence            45668999999999999999987  347999999999999999999987764  478999999874   34468999997


Q ss_pred             ccc------ccccChh--------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024021          181 YTF------FCAIEPE--------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-  239 (274)
Q Consensus       181 ~~~------~~~~~~~--------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  239 (274)
                      ...      +...++.              ....+++.+.++|+|||++++.+.+....       -..+.+.+.++.+ 
T Consensus       322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-------ene~~v~~~l~~~~  394 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------ENSLQIKAFLQRTA  394 (429)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHCT
T ss_pred             eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hHHHHHHHHHHhCC
Confidence            432      2222211              11478999999999999999987544211       1345677777776 


Q ss_pred             CCcEEE
Q 024021          240 GFQAIS  245 (274)
Q Consensus       240 Gf~~~~  245 (274)
                      +|..+.
T Consensus       395 ~~~~~~  400 (429)
T 1sqg_A          395 DAELCE  400 (429)
T ss_dssp             TCEECS
T ss_pred             CCEEeC
Confidence            576543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.22  E-value=1.7e-11  Score=109.67  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=92.0

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---------------CCCeEEEEeCChHHHHHHHHHhhcCCCC
Q 024021           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---------------PERYVVGLEISDIAIKKAEELSSSLPNA  156 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~  156 (274)
                      ++......++... ..++.+|||+|||+|.++..+++               .+.+++|+|+++.++..|+.+....+..
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            4455444444433 33457999999999999987765               2358999999999999999998776653


Q ss_pred             c-ceEEEEcccCCCCCCCCeeEEEecccccccChh---------------HHHHHHHHHHhcccCCcEEEEEEc
Q 024021          157 K-FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPE---------------MRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       157 ~-~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~---------------~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      . ++++..+|........+||+|+++.++......               ....++.++.+.|+|||++.++..
T Consensus       235 ~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          235 TDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             SSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            2 688999999875555689999999888764211               113688999999999999887763

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.20  E-value=1e-11  Score=105.55  Aligned_cols=114  Identities=12%  Similarity=0.078  Sum_probs=76.9

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeC----ChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWCP  171 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~  171 (274)
                      +..+.+.. ..++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  ....+ .++++++.+ |+.... 
T Consensus        71 L~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~-  145 (305)
T 2p41_A           71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP-  145 (305)
T ss_dssp             HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC-
T ss_pred             HHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC-
Confidence            44444432 334579999999999999999888 68999999    554332110  11111 256999999 888753 


Q ss_pred             CCCeeEEEeccccc---ccChhH-HHHHHHHHHhcccCCcEEEEEEccC
Q 024021          172 TELFDLIFDYTFFC---AIEPEM-RAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       172 ~~~~D~v~~~~~~~---~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      .++||+|++...+.   +..+.. ...++..+.++|+|||.+++..+..
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46899999977653   111111 1157888999999999988866543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.19  E-value=1.5e-10  Score=101.56  Aligned_cols=113  Identities=14%  Similarity=0.173  Sum_probs=87.3

Q ss_pred             HHhcCC-CCCCeEEEEcCCcchhHHHhhCC--C--------------------------------------CeEEEEeCC
Q 024021          101 LHQSGA-LPKGRALVPGCGTGYDVVAMASP--E--------------------------------------RYVVGLEIS  139 (274)
Q Consensus       101 ~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~--------------------------------------~~v~~vD~~  139 (274)
                      ++.... .++.+|||++||+|.+++.++..  +                                      .+|+|+|++
T Consensus       187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            444333 34579999999999999877641  1                                      479999999


Q ss_pred             hHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-cC-hhHHHHHHHHHHhcccC--CcEEEEEE
Q 024021          140 DIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~-~~-~~~~~~~l~~~~~~L~p--gG~~~~~~  213 (274)
                      +.+++.|+.++...++.++++|.++|+.+..+..+||+|+++..+.. +. .+....+...+.+.|++  |+.+++.+
T Consensus       267 ~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          267 EESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence            99999999999888877789999999998766678999999988753 22 23445566666666666  88877776

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.19  E-value=1.2e-10  Score=102.36  Aligned_cols=107  Identities=14%  Similarity=0.174  Sum_probs=83.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CC--------------------------------------CeEEEEeCChHHHHHH
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PE--------------------------------------RYVVGLEISDIAIKKA  146 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~--------------------------------------~~v~~vD~~~~~~~~a  146 (274)
                      .++..|||++||+|.+++.++.  .+                                      .+|+|+|+++.+++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            3457999999999999887765  11                                      4699999999999999


Q ss_pred             HHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc-C-hhHHHHHHHHHHhcccC--CcEEEEEE
Q 024021          147 EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI-E-PEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~-~-~~~~~~~l~~~~~~L~p--gG~~~~~~  213 (274)
                      +.++...++.+++++.++|+.+.....+||+|+++..+..- . .+....+...+.+.|++  ||.+++.+
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999888877899999999986666789999999887532 1 13344455555556655  88888876

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.19  E-value=1.7e-10  Score=100.98  Aligned_cols=107  Identities=10%  Similarity=0.196  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CC--------------------------------------CeEEEEeCChHHHHHH
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PE--------------------------------------RYVVGLEISDIAIKKA  146 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~--------------------------------------~~v~~vD~~~~~~~~a  146 (274)
                      .++..+||++||+|.+++.++.  .+                                      .+++|+|+++.+++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            4557999999999999887764  11                                      4699999999999999


Q ss_pred             HHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-c-ChhHHHHHHHHHHhcccC--CcEEEEEE
Q 024021          147 EELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-I-EPEMRAAWAQKIKDFLKP--DGELITLM  213 (274)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~-~-~~~~~~~~l~~~~~~L~p--gG~~~~~~  213 (274)
                      ++++...++.+++++..+|+.+.....+||+|+++..++. + .......+...+.+.|++  ||.+++.+
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            9999998887789999999998666678999999988764 2 224555666667777766  88888877

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.16  E-value=1.5e-10  Score=95.29  Aligned_cols=87  Identities=15%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-
Q 024021           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-  172 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-  172 (274)
                      ...+..++.... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+.... 
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence            344555555443 34579999999999999999988899999999999999999988643   5799999999884332 


Q ss_pred             -CCeeEEEeccccc
Q 024021          173 -ELFDLIFDYTFFC  185 (274)
Q Consensus       173 -~~~D~v~~~~~~~  185 (274)
                       ..| .|+++..++
T Consensus        93 ~~~~-~vv~nlPy~  105 (244)
T 1qam_A           93 NQSY-KIFGNIPYN  105 (244)
T ss_dssp             SCCC-EEEEECCGG
T ss_pred             CCCe-EEEEeCCcc
Confidence             345 456555543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.10  E-value=3.5e-09  Score=91.88  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC-----------CCcceE
Q 024021          109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP-----------NAKFVS  160 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~-----------~~~~~~  160 (274)
                      ..+|+|+|||+|.++..+..                 +..+|...|+-....+..-+.++...           ...+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            36899999999999877621                 34589999997776666655554321           001223


Q ss_pred             EEE---cccCC-CCCCCCeeEEEecccccccCh------------------------------------hHHHHHHHHHH
Q 024021          161 FLK---ADFFT-WCPTELFDLIFDYTFFCAIEP------------------------------------EMRAAWAQKIK  200 (274)
Q Consensus       161 ~~~---~d~~~-~~~~~~~D~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~  200 (274)
                      |+.   +.+.. ..|.+++|+|+++.++|+++.                                    .++..+++..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333   33333 678899999999999999851                                    14556788999


Q ss_pred             hcccCCcEEEEEEccCCCC------------------------------------CCCCCcccCHHHHHHHHh-cCCCcE
Q 024021          201 DFLKPDGELITLMFPISDH------------------------------------VGGPPYKVSVSDYEEVLQ-PMGFQA  243 (274)
Q Consensus       201 ~~L~pgG~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~l~-~~Gf~~  243 (274)
                      +.|+|||++++...+..+.                                    ..-|.++.+.+|+.+.++ +.||.+
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            9999999999877654321                                    022456679999999998 589999


Q ss_pred             EEEeeccccc
Q 024021          244 ISIVDNKLAI  253 (274)
Q Consensus       244 ~~~~~~~~~~  253 (274)
                      ..++....+.
T Consensus       293 ~~le~~~~~~  302 (374)
T 3b5i_A          293 DKLVVYKGGS  302 (374)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEeecC
Confidence            9887765443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.09  E-value=2.1e-10  Score=100.32  Aligned_cols=100  Identities=13%  Similarity=-0.017  Sum_probs=82.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCC---CCCCeeEEEe
Q 024021          108 PKGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWC---PTELFDLIFD  180 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~---~~~~~D~v~~  180 (274)
                      ++.+|||++||+|..++.++.  .| .+|+++|+++.+++.+++++..+++.++ ++++.+|+.+..   ..+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            467999999999999998887  45 4899999999999999999999988766 999999987632   2457999998


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .. +.. +    ..+++.+.+.|++||++++..
T Consensus       132 DP-~g~-~----~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP-FGT-P----VPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC-SSC-C----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC-CcC-H----HHHHHHHHHHhCCCCEEEEEe
Confidence            76 221 1    357888999999999888876

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.08  E-value=4.4e-09  Score=89.35  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=96.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ...+..++.  ..++.+|||+|||+|..+..+++   ...+|+++|+++.+++.+++++...+. .+++++.+|+.+..+
T Consensus        91 s~l~~~~l~--~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           91 SCLPAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSP  167 (309)
T ss_dssp             GGHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCT
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCc
Confidence            333444443  45678999999999999998886   346999999999999999999988776 469999999887433


Q ss_pred             C----CCeeEEEecccc------cccCh----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024021          172 T----ELFDLIFDYTFF------CAIEP----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       172 ~----~~~D~v~~~~~~------~~~~~----------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~  225 (274)
                      .    .+||.|++....      ..-++                .....+++.+.++++ ||+++..+.+...       
T Consensus       168 ~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~-------  239 (309)
T 2b9e_A          168 SDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQ-------  239 (309)
T ss_dssp             TCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCG-------
T ss_pred             cccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCCh-------
Confidence            2    479999974332      11011                011346777777786 8988876644321       


Q ss_pred             ccCHHHHHHHHhcC-C-CcEEEE
Q 024021          226 KVSVSDYEEVLQPM-G-FQAISI  246 (274)
Q Consensus       226 ~~~~~~~~~~l~~~-G-f~~~~~  246 (274)
                      .-+.+.+.+.++++ + |+.+.+
T Consensus       240 ~Ene~~v~~~l~~~~~~~~~~~~  262 (309)
T 2b9e_A          240 EENEDVVRDALQQNPGAFRLAPA  262 (309)
T ss_dssp             GGTHHHHHHHHTTSTTTEEECCC
T ss_pred             HHhHHHHHHHHHhCCCcEEEecc
Confidence            11456677778776 3 665543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.08  E-value=9.3e-10  Score=87.26  Aligned_cols=96  Identities=15%  Similarity=0.006  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC---------------
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW---------------  169 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~---------------  169 (274)
                      +..+|||+||  |+.+..+++. +.+|+.+|.+++..+.|++++...+.  .++++++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            4689999998  5778888774 78999999999999999999998887  78999999996542               


Q ss_pred             ---------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          170 ---------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       170 ---------~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                               . ..++||+|+..+-       .....+..+.+.|+|||++++-
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEe
Confidence                     1 1367999996542       2235566777999999999663

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.07  E-value=3.5e-10  Score=95.37  Aligned_cols=87  Identities=15%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCC
Q 024021           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~  173 (274)
                      ..+..++.... .++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+. .+..
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~~  113 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNKL  113 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGGS
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCcccC
Confidence            34445555443 35579999999999999999988889999999999999999988633   5799999999983 3445


Q ss_pred             CeeEEEeccccc
Q 024021          174 LFDLIFDYTFFC  185 (274)
Q Consensus       174 ~~D~v~~~~~~~  185 (274)
                      .||.|+++..++
T Consensus       114 ~fD~Iv~NlPy~  125 (295)
T 3gru_A          114 DFNKVVANLPYQ  125 (295)
T ss_dssp             CCSEEEEECCGG
T ss_pred             CccEEEEeCccc
Confidence            799999887765

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.05  E-value=1.1e-11  Score=102.15  Aligned_cols=111  Identities=14%  Similarity=0.139  Sum_probs=80.9

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-C-CCC
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-P-TEL  174 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-~~~  174 (274)
                      +..++.... .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++...   .++++++.+|+.+.. + .++
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~~~~~~   94 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCcccCCC
Confidence            444444433 3457999999999999999998888999999999999998877652   257999999998843 3 257


Q ss_pred             eeEEEecccccccChhHHHHHH--------------HHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWA--------------QKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l--------------~~~~~~L~pgG~~~~~~  213 (274)
                      | .|+++..+.. .......++              +.+.++|+|||.+.+..
T Consensus        95 f-~vv~n~Py~~-~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           95 Y-KIVGNIPYHL-STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             E-EEEEECCSSS-CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             c-EEEEeCCccc-cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            8 6777655543 222222332              56889999999877644

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.03  E-value=1.7e-09  Score=89.43  Aligned_cols=84  Identities=8%  Similarity=0.019  Sum_probs=65.5

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----  171 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----  171 (274)
                      +..++... ..++.+|||||||+|.++..+++.+.+|+++|+++.+++.++++....   ++++++.+|+.+...     
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~   94 (255)
T 3tqs_A           18 LQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVKT   94 (255)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSCC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhcc
Confidence            33344433 345679999999999999999998899999999999999999998652   579999999988422     


Q ss_pred             CCCeeEEEeccccc
Q 024021          172 TELFDLIFDYTFFC  185 (274)
Q Consensus       172 ~~~~D~v~~~~~~~  185 (274)
                      .++|| |+++..+.
T Consensus        95 ~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           95 DKPLR-VVGNLPYN  107 (255)
T ss_dssp             SSCEE-EEEECCHH
T ss_pred             CCCeE-EEecCCcc
Confidence            34688 66655543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.02  E-value=1.4e-09  Score=90.54  Aligned_cols=95  Identities=14%  Similarity=0.034  Sum_probs=71.6

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--C
Q 024021           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--E  173 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--~  173 (274)
                      .+..++... ..++ +|||+|||+|.++..+++.+.+|+++|+++.+++.++++...    .+++++.+|+.+....  .
T Consensus        35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~~~~~~  109 (271)
T 3fut_A           35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYPWEEVP  109 (271)
T ss_dssp             HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSCGGGSC
T ss_pred             HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCChhhcc
Confidence            344444433 3445 999999999999999999889999999999999999998862    4799999999884332  2


Q ss_pred             CeeEEEecccccccChhHHHHHHH
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQ  197 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~  197 (274)
                      .+|.|+++..++ +..+....+++
T Consensus       110 ~~~~iv~NlPy~-iss~il~~ll~  132 (271)
T 3fut_A          110 QGSLLVANLPYH-IATPLVTRLLK  132 (271)
T ss_dssp             TTEEEEEEECSS-CCHHHHHHHHH
T ss_pred             CccEEEecCccc-ccHHHHHHHhc
Confidence            689999887766 44343333433

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.02  E-value=6e-10  Score=97.28  Aligned_cols=99  Identities=15%  Similarity=-0.031  Sum_probs=79.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC---------------CCCcceEEEEcccCCCC
Q 024021          108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL---------------PNAKFVSFLKADFFTWC  170 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~  170 (274)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.+++++..+               +.. +++++.+|+....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            4689999999999999988873  458999999999999999999876               553 3999999987632


Q ss_pred             --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 --~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                        ..+.||+|+... +...     ..+++.+.+.|++||++++..
T Consensus       126 ~~~~~~fD~I~lDP-~~~~-----~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          126 AERHRYFHFIDLDP-FGSP-----MEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHSTTCEEEEEECC-SSCC-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhccCCCCEEEeCC-CCCH-----HHHHHHHHHhcCCCCEEEEEe
Confidence              135799999654 3221     367888999999999888765

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.00  E-value=5.6e-09  Score=90.74  Aligned_cols=143  Identities=11%  Similarity=0.108  Sum_probs=97.7

Q ss_pred             CCeEEEEcCCcchhHHHhhC-------------------CCCeEEEEeCC-----------hHHHHHHHHHhhcCCCCcc
Q 024021          109 KGRALVPGCGTGYDVVAMAS-------------------PERYVVGLEIS-----------DIAIKKAEELSSSLPNAKF  158 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-------------------~~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~  158 (274)
                      ..+|+|+||++|.++..+..                   +..+|+..|+-           +...+.+++..   +...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~---g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN---GRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT---CCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc---cCCCC
Confidence            46899999999999875543                   12478888886           44333332221   11123


Q ss_pred             eEEEEcccCC----CCCCCCeeEEEecccccccCh---h----------------------------------HHHHHHH
Q 024021          159 VSFLKADFFT----WCPTELFDLIFDYTFFCAIEP---E----------------------------------MRAAWAQ  197 (274)
Q Consensus       159 ~~~~~~d~~~----~~~~~~~D~v~~~~~~~~~~~---~----------------------------------~~~~~l~  197 (274)
                      ..|+.+....    +.|.+++|+|+++.++|++..   .                                  ++..+|+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~  209 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR  209 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4566654443    678899999999999999742   1                                  1123377


Q ss_pred             HHHhcccCCcEEEEEEccCCCC--C----------------------------CCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024021          198 KIKDFLKPDGELITLMFPISDH--V----------------------------GGPPYKVSVSDYEEVLQPMG-FQAISI  246 (274)
Q Consensus       198 ~~~~~L~pgG~~~~~~~~~~~~--~----------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~  246 (274)
                      ..++.|+|||++++...+....  .                            .-|.+..+.+|+.+++++.| |++..+
T Consensus       210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            7799999999999988766443  1                            12556679999999999985 898888


Q ss_pred             eecccccC
Q 024021          247 VDNKLAIG  254 (274)
Q Consensus       247 ~~~~~~~~  254 (274)
                      +.......
T Consensus       290 e~~~~~~~  297 (384)
T 2efj_A          290 ETFNAPYD  297 (384)
T ss_dssp             EEEEEETT
T ss_pred             EEEeeccc
Confidence            76554443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.00  E-value=1.4e-10  Score=96.09  Aligned_cols=79  Identities=14%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh-------HHHHHHHHHhhcCCCCcceEEEEcccCCCC---CC--CCe
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISD-------IAIKKAEELSSSLPNAKFVSFLKADFFTWC---PT--ELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~--~~~  175 (274)
                      ++.+|||+|||+|..+..++..+.+|+++|+++       .+++.|+++...++..++++++.+|+.+..   +.  ++|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f  162 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP  162 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence            457999999999999999998888999999999       999999888765544456999999998732   22  689


Q ss_pred             eEEEecccccc
Q 024021          176 DLIFDYTFFCA  186 (274)
Q Consensus       176 D~v~~~~~~~~  186 (274)
                      |+|++..++.+
T Consensus       163 D~V~~dP~~~~  173 (258)
T 2r6z_A          163 DIVYLDPMYPE  173 (258)
T ss_dssp             SEEEECCCC--
T ss_pred             cEEEECCCCCC
Confidence            99999877654

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.99  E-value=9.3e-10  Score=101.24  Aligned_cols=100  Identities=22%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          110 GRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..|||+|||+|.+....++    .+.  +|++||.++ +...+++....+++.++|+++.+|+++...++++|+|++=..
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwM  437 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELL  437 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcC
Confidence            5799999999999543333    233  789999997 566788888888888999999999999777789999998655


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      -..+..+....++....+.|||||+++
T Consensus       438 G~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          438 GSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             BTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHhcCCCcEEc
Confidence            443433444578888999999999875

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.98  E-value=7.2e-09  Score=89.32  Aligned_cols=144  Identities=14%  Similarity=0.162  Sum_probs=103.4

Q ss_pred             CeEEEEcCCcchhHHHhhCC------------------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC
Q 024021          110 GRALVPGCGTGYDVVAMASP------------------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~------------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~  168 (274)
                      .+|+|+||++|.+++.+...                  ..+|+..|+-....+...+.++......+..|+.+   .+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            68999999999988655432                  34899999988888888777754211112345444   3333


Q ss_pred             -CCCCCCeeEEEecccccccCh-------------------------------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       169 -~~~~~~~D~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                       +.|.+++|+|+++.++|++..                               .++..+|+..++.|+|||++++...+.
T Consensus       133 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr  212 (359)
T 1m6e_X          133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence             678899999999999998742                               134566889999999999999987655


Q ss_pred             CCCC----------------------------------CCCCcccCHHHHHHHHhcCC-CcEEEEeeccccc
Q 024021          217 SDHV----------------------------------GGPPYKVSVSDYEEVLQPMG-FQAISIVDNKLAI  253 (274)
Q Consensus       217 ~~~~----------------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~  253 (274)
                      ....                                  .-|.+..+.+|+.+.+++.| |.+..++......
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~  284 (359)
T 1m6e_X          213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW  284 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET
T ss_pred             CCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeecc
Confidence            3320                                  22456678999999999996 5887776554433

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.96  E-value=9.8e-10  Score=96.36  Aligned_cols=88  Identities=20%  Similarity=0.133  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCCCCC--
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFTWCP--  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~--  171 (274)
                      ..+..+......++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|+.+....  +. .+++++++|+.+..+  
T Consensus        81 e~vA~~~a~~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~  159 (410)
T 3ll7_A           81 AVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLI  159 (410)
T ss_dssp             HHHHHHGGGGSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHH
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhc
Confidence            3344443332334789999999999999999998899999999999999999999866  55 679999999987422  


Q ss_pred             -CCCeeEEEecccc
Q 024021          172 -TELFDLIFDYTFF  184 (274)
Q Consensus       172 -~~~~D~v~~~~~~  184 (274)
                       .++||+|++....
T Consensus       160 ~~~~fDvV~lDPPr  173 (410)
T 3ll7_A          160 KTFHPDYIYVDPAR  173 (410)
T ss_dssp             HHHCCSEEEECCEE
T ss_pred             cCCCceEEEECCCC
Confidence             2579999997554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=5.4e-09  Score=95.48  Aligned_cols=122  Identities=15%  Similarity=0.098  Sum_probs=89.0

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----C----------------CCeEEEEeCChHHHHHHHHHhh
Q 024021           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P----------------ERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~----------------~~~v~~vD~~~~~~~~a~~~~~  151 (274)
                      +|......++... ..++.+|||++||+|.++..+++    .                ...++|+|+++.++..|+.++.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            3444333333332 33457999999999999877654    1                1379999999999999999987


Q ss_pred             cCCCCc----ceEEEEcccCCC--CCCCCeeEEEecccccccCh------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          152 SLPNAK----FVSFLKADFFTW--CPTELFDLIFDYTFFCAIEP------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       152 ~~~~~~----~~~~~~~d~~~~--~~~~~~D~v~~~~~~~~~~~------------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..+...    ++.+..+|....  ...++||+|+++.++.....            .....++.++.+.|+|||++.++.
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~  312 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  312 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            766543    278999998762  33468999999988765321            112368999999999999988876


Q ss_pred             c
Q 024021          214 F  214 (274)
Q Consensus       214 ~  214 (274)
                      .
T Consensus       313 p  313 (541)
T 2ar0_A          313 P  313 (541)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.93  E-value=8.7e-10  Score=100.62  Aligned_cols=146  Identities=20%  Similarity=0.132  Sum_probs=99.8

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-----------------CCeEEEEeCChHHHHHHHHHhhcCC
Q 024021           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-----------------ERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      -+|...+..++........+|||.+||+|.++..+++.                 ...++|+|+++.++..|+.++...+
T Consensus       228 yTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          228 YTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             eCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            34555555555444333459999999999998776430                 4589999999999999999988777


Q ss_pred             CCcceEEEEcccCCC--CCCCCeeEEEecccccc-------------------------cChh--HHHHHHHHHHhcccC
Q 024021          155 NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCA-------------------------IEPE--MRAAWAQKIKDFLKP  205 (274)
Q Consensus       155 ~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~~~~-------------------------~~~~--~~~~~l~~~~~~L~p  205 (274)
                      ...++.+..+|....  .+..+||+|+++.++..                         +++.  .--.++.++.+.|+|
T Consensus       308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  387 (544)
T 3khk_A          308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP  387 (544)
T ss_dssp             CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred             CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence            655555588887652  34568999999988764                         1110  012588999999999


Q ss_pred             CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          206 DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       206 gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      ||++.++.....-...    ......+++.+-+.+.
T Consensus       388 gGr~aiVlP~g~L~~~----~~~~~~iRk~Lle~~~  419 (544)
T 3khk_A          388 TGSMALLLANGSMSSN----TNNEGEIRKTLVEQDL  419 (544)
T ss_dssp             EEEEEEEEETHHHHCC----GGGHHHHHHHHHHTTC
T ss_pred             CceEEEEecchhhhcC----cchHHHHHHHHHhCCc
Confidence            9998877632210000    0134677777777654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.89  E-value=1.3e-09  Score=90.19  Aligned_cols=127  Identities=20%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCCcchhHHHhh---------CC-----CCeEEEEeCCh---HHHH-----------HHHHHhhcC------
Q 024021          108 PKGRALVPGCGTGYDVVAMA---------SP-----ERYVVGLEISD---IAIK-----------KAEELSSSL------  153 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~---------~~-----~~~v~~vD~~~---~~~~-----------~a~~~~~~~------  153 (274)
                      ++.+|||+|+|+|.++..++         .+     ..+++++|..|   +.+.           .|++.....      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            44799999999999987643         22     14899999887   4333           555554331      


Q ss_pred             -------CCCcceEEEEcccCCCCC---C---CCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024021          154 -------PNAKFVSFLKADFFTWCP---T---ELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDH  219 (274)
Q Consensus       154 -------~~~~~~~~~~~d~~~~~~---~---~~~D~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~~~  219 (274)
                             ....+++++.+|+.+..+   .   ..||+|+....-..-.++. ...+++.+.++|+|||+++..+      
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence                   112467899999877221   1   2799999754211111111 2578999999999999988532      


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                              ....+.+.|+++||.+.+...
T Consensus       214 --------aa~~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          214 --------SAGFVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             --------CBHHHHHHHHHHTEEEEEECC
T ss_pred             --------CCHHHHHHHHHCCCEEEeCCC
Confidence                    235788899999999876543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.87  E-value=9.4e-09  Score=96.66  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=81.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC------C--------------------------------------CCeEEEEeCChHH
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS------P--------------------------------------ERYVVGLEISDIA  142 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~------~--------------------------------------~~~v~~vD~~~~~  142 (274)
                      .++..|||++||+|.+++.++.      +                                      ...++|+|+++.+
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            3557999999999999877654      1                                      1479999999999


Q ss_pred             HHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeEEEecccccc-cC-hhHHHHHH---HHHHhcccCCcEEEEEEc
Q 024021          143 IKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLIFDYTFFCA-IE-PEMRAAWA---QKIKDFLKPDGELITLMF  214 (274)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~D~v~~~~~~~~-~~-~~~~~~~l---~~~~~~L~pgG~~~~~~~  214 (274)
                      ++.|+.++...++.+.++|.++|+.+..++   ++||+|+++.++.. +. ......+.   .++.+.+.|||.+++.+.
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            999999999998887899999999874322   37999999988764 21 22333333   444455568999888763

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.87  E-value=2e-09  Score=99.05  Aligned_cols=100  Identities=17%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             CeEEEEcCCcchhHHHh---hC-CC-----------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---
Q 024021          110 GRALVPGCGTGYDVVAM---AS-PE-----------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l---~~-~~-----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---  171 (274)
                      ..|||+|||+|.+....   ++ .+           .+|++||.++.++...+.... +++.++|+++.+|+++...   
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhcccccc
Confidence            58999999999996432   21 22           399999999987766665554 5667889999999998432   


Q ss_pred             ---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       172 ---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                         .+++|+|++=..-..++.+.....+..+.+.|+|||+++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence               678999998666444444555667888889999999866

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.85  E-value=6e-09  Score=88.11  Aligned_cols=75  Identities=19%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---C---CCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P---TELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~---~~~~D~v  178 (274)
                      .++.+|||+|||+|..+..+++.  +.+|+|+|.++.+++.|+++....+  ++++++++|+.+..   .   .++||.|
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g~~~~D~V  102 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLGIEKVDGI  102 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcCCCCCCEE
Confidence            45689999999999999999873  6799999999999999999987765  58999999987632   1   1579999


Q ss_pred             Eeccc
Q 024021          179 FDYTF  183 (274)
Q Consensus       179 ~~~~~  183 (274)
                      ++...
T Consensus       103 l~D~g  107 (301)
T 1m6y_A          103 LMDLG  107 (301)
T ss_dssp             EEECS
T ss_pred             EEcCc
Confidence            97654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.81  E-value=2.5e-08  Score=90.90  Aligned_cols=129  Identities=13%  Similarity=-0.023  Sum_probs=93.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCC----CCCCCeeE
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTW----CPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~----~~~~~~D~  177 (274)
                      ++.+|+|.+||+|.++..+++.     ...++|+|+++.++..|+.+....+.. .++.+..+|....    ....+||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            4579999999999998777652     468999999999999999998777654 4688999998864    23568999


Q ss_pred             EEecccccccC-h------h--------------HHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024021          178 IFDYTFFCAIE-P------E--------------MRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEV  235 (274)
Q Consensus       178 v~~~~~~~~~~-~------~--------------~~~~~l~~~~~~L~-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (274)
                      |+++.++..-. .      +              .--.++.++.+.|+ |||++.++.....-...     .....+++.
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~-----~~~~~iRk~  375 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRG-----NAEGTIRKA  375 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCC-----THHHHHHHH
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCC-----chhHHHHHH
Confidence            99998764210 0      0              01247899999999 99998877643211000     024667777


Q ss_pred             HhcCCC
Q 024021          236 LQPMGF  241 (274)
Q Consensus       236 l~~~Gf  241 (274)
                      +-+.+.
T Consensus       376 Lle~~~  381 (542)
T 3lkd_A          376 LLEEGA  381 (542)
T ss_dssp             HHHTTC
T ss_pred             HHhCCc
Confidence            777654

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.80  E-value=5.2e-08  Score=81.49  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=81.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcC--C--CCcceEEEEcccCCCC--CCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSL--P--NAKFVSFLKADFFTWC--PTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~~~~~~~d~~~~~--~~~~~D~v  178 (274)
                      ..+.+||-||.|.|..+..+++ + ..+|+.+|+++.+++.+++.++..  +  ..++++++.+|.....  ..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4468999999999999999987 3 459999999999999999987531  1  2478999999999843  34689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +....=..-+..  ....+++.+.+.|+|||+++...
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            975331111111  12467899999999999999865

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.78  E-value=1.9e-08  Score=82.84  Aligned_cols=85  Identities=7%  Similarity=0.041  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      ..+..++.... .++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++ .    ..+++++.+|+.+.....
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCCeEEEEcchhhCChhH
Confidence            33445555443 356799999999999999999975 7999999999999999877 2    257999999998843222


Q ss_pred             --CeeEEEeccccc
Q 024021          174 --LFDLIFDYTFFC  185 (274)
Q Consensus       174 --~~D~v~~~~~~~  185 (274)
                        ....|+++..+.
T Consensus        93 ~~~~~~vv~NlPy~  106 (249)
T 3ftd_A           93 LGKELKVVGNLPYN  106 (249)
T ss_dssp             SCSSEEEEEECCTT
T ss_pred             ccCCcEEEEECchh
Confidence              122555555543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.73  E-value=1.3e-08  Score=75.34  Aligned_cols=98  Identities=13%  Similarity=0.003  Sum_probs=68.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--  172 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--  172 (274)
                      .+..++.....++.+|||+|||.| ..+..|++ .|..|+++|+++.+++                ++..|++++...  
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y   87 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRMEIY   87 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccccc
Confidence            355555544455689999999999 69999997 9999999999987544                888999986543  


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      ..||+|++...-.     +++..+-++.+.+  |.-+++...+..
T Consensus        88 ~~~DLIYsirPP~-----El~~~i~~lA~~v--~adliI~pL~~E  125 (153)
T 2k4m_A           88 RGAALIYSIRPPA-----EIHSSLMRVADAV--GARLIIKPLTGE  125 (153)
T ss_dssp             TTEEEEEEESCCT-----TTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred             CCcCEEEEcCCCH-----HHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence            4899998755432     2233344444433  455666655443

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.72  E-value=1.6e-08  Score=84.60  Aligned_cols=67  Identities=15%  Similarity=0.103  Sum_probs=54.3

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe----EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY----VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~----v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  169 (274)
                      +..++... ..++.+|||||||+|.++..+++.+..    |+++|+++.+++.++++.     .++++++.+|+.+.
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            34444433 345679999999999999999886665    999999999999999983     25799999999874

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.70  E-value=4.8e-09  Score=86.62  Aligned_cols=77  Identities=16%  Similarity=0.068  Sum_probs=60.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CC-CCcceEEEEcccCCCCC--CCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-NAKFVSFLKADFFTWCP--TELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------~~-~~~~~~~~~~d~~~~~~--~~~~D~v~  179 (274)
                      .+|||+|||+|..+..++..|++|+++|.++.++..+++++..       ++ ...+++++.+|..+..+  .++||+|+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~  169 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence            7999999999999999998888999999999876666655431       11 22479999999877322  24799999


Q ss_pred             ecccccc
Q 024021          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      +...+..
T Consensus       170 lDP~y~~  176 (258)
T 2oyr_A          170 LDPMFPH  176 (258)
T ss_dssp             ECCCCCC
T ss_pred             EcCCCCC
Confidence            9988765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.64  E-value=2.2e-08  Score=82.60  Aligned_cols=74  Identities=11%  Similarity=-0.029  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe--EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC------CCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERY--VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------~~~D~v  178 (274)
                      .++.+|||||||+|.++. +.+ +.+  |+++|+++.+++.++++....   ++++++.+|+.+....      +..|.|
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~~~~~~v   94 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcccCCceEE
Confidence            455799999999999999 654 566  999999999999999887543   4799999999874221      234677


Q ss_pred             Eeccccc
Q 024021          179 FDYTFFC  185 (274)
Q Consensus       179 ~~~~~~~  185 (274)
                      +++..+.
T Consensus        95 vsNlPY~  101 (252)
T 1qyr_A           95 FGNLPYN  101 (252)
T ss_dssp             EEECCTT
T ss_pred             EECCCCC
Confidence            7776654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.63  E-value=9.9e-08  Score=78.38  Aligned_cols=142  Identities=18%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC
Q 024021           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~  170 (274)
                      ...+.++.+... .++.+|||+|||+|.++..+++. +. .++++|+.-.....+... ...  ..++..+..++.. ..
T Consensus        60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~--g~~ii~~~~~~dv~~l  136 (277)
T 3evf_A           60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSL--GWNIITFKDKTDIHRL  136 (277)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBT--TGGGEEEECSCCTTTS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcC--CCCeEEEeccceehhc
Confidence            444555555543 34579999999999999988763 44 788888874320000000 000  1134445555432 34


Q ss_pred             CCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC-cEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          171 PTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~----~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +.++||+|++.....    ..+....-.+++.+.++|+|| |.+++-.|.+.        .....++.+.|+.. |..+.
T Consensus       137 ~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~py--------g~~~~~l~~~lk~~-F~~V~  207 (277)
T 3evf_A          137 EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPY--------MPDVLEKLELLQRR-FGGTV  207 (277)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTT--------SHHHHHHHHHHHHH-HCCEE
T ss_pred             CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC--------CccHHHHHHHHHHh-cCCEE
Confidence            457899999987665    121111123478889999999 99999876532        11345666666664 66665


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       208 ~~K  210 (277)
T 3evf_A          208 IRN  210 (277)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.62  E-value=2.4e-07  Score=86.68  Aligned_cols=137  Identities=10%  Similarity=0.066  Sum_probs=88.6

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHH--HHHhhcCCCC---cceEEEEcccCC--CCCCCCe
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKA--EELSSSLPNA---KFVSFLKADFFT--WCPTELF  175 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~vD~~~~~~~~a--~~~~~~~~~~---~~~~~~~~d~~~--~~~~~~~  175 (274)
                      ++.+|||+|||+|.++..+++.     ..+++|+|+++.++..|  +.+...+...   ....+...|+..  .....+|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            4679999999999999988762     24799999999999999  5554432211   223556666665  2234689


Q ss_pred             eEEEecccccc-cC-hh-------------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024021          176 DLIFDYTFFCA-IE-PE-------------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       176 D~v~~~~~~~~-~~-~~-------------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      |+|+++.++.. .. +.                         ....++.++.+.|++||++.++....--...+    ..
T Consensus       401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg----~~  476 (878)
T 3s1s_A          401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQG----NE  476 (878)
T ss_dssp             EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCS----HH
T ss_pred             CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCC----hH
Confidence            99999998843 11 11                         12346788999999999988877432110000    01


Q ss_pred             HHHHHHHHhcCCCcEEEEeec
Q 024021          229 VSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       229 ~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ...+++.+.+. +.+..+...
T Consensus       477 ~kkLRk~LLe~-~~I~aIIdL  496 (878)
T 3s1s_A          477 SKAFREFLVGN-FGLEHIFLY  496 (878)
T ss_dssp             HHHHHHHHTTT-TCEEEEEEC
T ss_pred             HHHHHHHHHhC-CCeEEEEEC
Confidence            45677776654 444444443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.46  E-value=3.7e-07  Score=78.74  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=91.2

Q ss_pred             CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC-------CCcceEEEEcccCCCC-----CCCC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP-------NAKFVSFLKADFFTWC-----PTEL  174 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~~~~~~~~~d~~~~~-----~~~~  174 (274)
                      ++++||=||.|.|..+..+++ +..+|+.+|+++.+++.+++.++...       ..++++++.+|.....     ..++
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            457999999999999999887 55689999999999999999875421       1246899999987632     3467


Q ss_pred             eeEEEeccccc---c----cCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          175 FDLIFDYTFFC---A----IEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       175 ~D~v~~~~~~~---~----~~~-~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ||+|+....-.   .    ... -....+++.+.+.|+|||+++.-.-..       .+.-....+.+.+++. |..+..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~-------~~~~~~~~i~~tl~~v-F~~v~~  356 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV-------NLTEALSLYEEQLGRL-YCPVEF  356 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET-------TCHHHHHHHHHHHTTS-SSCEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC-------cchhHHHHHHHHHHHh-CCcceE
Confidence            99999753211   0    111 123578899999999999988754211       1111345677778776 444443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.44  E-value=3.9e-07  Score=74.99  Aligned_cols=141  Identities=16%  Similarity=0.062  Sum_probs=84.6

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCCC
Q 024021           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFTW  169 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~  169 (274)
                      ...+.++.+.. ..++.+|||+|||+|.++.++++ .+. .++|+|+...+...+... ...  ..++.....  |+. .
T Consensus        76 AfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~--g~~ii~~~~~~dv~-~  151 (282)
T 3gcz_A           76 SAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL--GWNLIRFKDKTDVF-N  151 (282)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT--TGGGEEEECSCCGG-G
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC--CCceEEeeCCcchh-h
Confidence            44455555544 34557999999999999998875 344 789999975422111100 001  122333332  333 3


Q ss_pred             CCCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC--cEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          170 CPTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD--GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~----~~~~~~~~~~l~~~~~~L~pg--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      .+..++|+|+|.....    ..+....-.+++-+.++|+||  |.|++-.|.+.        .....++.+.|+.. |..
T Consensus       152 l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~py--------g~~~~~l~~~lk~~-F~~  222 (282)
T 3gcz_A          152 MEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPY--------TPLIMEELSRLQLK-HGG  222 (282)
T ss_dssp             SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCC--------SHHHHHHHHHHHHH-HCC
T ss_pred             cCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCC--------CccHHHHHHHHHHh-cCC
Confidence            3457899999987766    121111123577778999999  99999886531        11345666666664 666


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      +.+..
T Consensus       223 V~~~K  227 (282)
T 3gcz_A          223 GLVRV  227 (282)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            65543

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.44  E-value=5.5e-07  Score=75.11  Aligned_cols=125  Identities=12%  Similarity=0.039  Sum_probs=90.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCCh--------------------------HHHHHHHHHhhcC
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISD--------------------------IAIKKAEELSSSL  153 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~vD~~~--------------------------~~~~~a~~~~~~~  153 (274)
                      ..++.|||+|+..|..+..++.       ++.+++++|...                          ..++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3467999999999999987764       267899999642                          1367788898888


Q ss_pred             CC-CcceEEEEcccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024021          154 PN-AKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       154 ~~-~~~~~~~~~d~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                      ++ .++++++.+|+.+.   .+.++||+|+.-.-.+    .....+++.+...|+|||++++-++..        +.-..
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~~~--------~~G~~  252 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDYMM--------CPPCK  252 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSCTT--------CHHHH
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCCCC--------CHHHH
Confidence            87 37899999999773   2346899999654321    234578899999999999988865411        11124


Q ss_pred             HHHHHHHhcCCCcE
Q 024021          230 SDYEEVLQPMGFQA  243 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~  243 (274)
                      .-+.+.++..|+..
T Consensus       253 ~Av~Ef~~~~~i~~  266 (282)
T 2wk1_A          253 DAVDEYRAKFDIAD  266 (282)
T ss_dssp             HHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhcCCce
Confidence            56666777777554

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.38  E-value=2e-06  Score=71.07  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=63.8

Q ss_pred             cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----
Q 024021           95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----  169 (274)
Q Consensus        95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----  169 (274)
                      ...+.+.+.  ..++..++|++||.|..+..+++.+.+|+|+|.++.+++.|++ +..    ++++++++|+.+.     
T Consensus        11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence            333444443  3467899999999999999998878899999999999999998 643    4799999999873     


Q ss_pred             -CCCCCeeEEEecc
Q 024021          170 -CPTELFDLIFDYT  182 (274)
Q Consensus       170 -~~~~~~D~v~~~~  182 (274)
                       ...+++|.|++..
T Consensus        84 ~~g~~~vDgIL~DL   97 (285)
T 1wg8_A           84 ALGVERVDGILADL   97 (285)
T ss_dssp             HTTCSCEEEEEEEC
T ss_pred             HcCCCCcCEEEeCC
Confidence             1225799999743

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.37  E-value=2.5e-06  Score=73.30  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=80.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+||++|.++..+++.|.+|++||..+- -...    ..   .++++++.+|.+...+ ..+||+|+|..+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l-~~~l----~~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPM-AQSL----MD---TGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCC-CHHH----HT---TTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhc-Chhh----cc---CCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            456789999999999999999999999999998642 1111    11   1579999999998544 4579999997765


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      .   +......+..+......++.++...........  ........+.+.++.+||..
T Consensus       281 ~---p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~--~l~~~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          281 K---PAKVAALMAQWLVNGWCRETIFNLKLPMKKRYE--EVSHNLAYIQAQLDEHGINA  334 (375)
T ss_dssp             C---HHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHH--HHHHHHHHHHHHHHHTTCCE
T ss_pred             C---hHHhHHHHHHHHhccccceEEEEEEecccchHH--HHHHHHHHHHHHHHhcCcch
Confidence            3   222333444444444444666665544321100  00012456677888888864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.34  E-value=3e-06  Score=73.10  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=89.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCC-----CcceEEEEcccCCC--CCCCCee
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPN-----AKFVSFLKADFFTW--CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~--~~~~~~D  176 (274)
                      ..++.+|||+++|.|.=+..++..+  ..++++|+++..+...++++...+.     ..++.+...|....  ...+.||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            5667899999999999998888743  3799999999999999888765432     24688888888763  3457899


Q ss_pred             EEEecccccc---------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024021          177 LIFDYTFFCA---------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE  234 (274)
Q Consensus       177 ~v~~~~~~~~---------------~~~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (274)
                      .|++...-..               ....       ....++....++|||||+++..+.+....       -+.+.+..
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~-------ENE~vV~~  298 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL-------QNEYVVQG  298 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT-------TTHHHHHH
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh-------hCHHHHHH
Confidence            9996432110               1111       12478889999999999999887665322       13455555


Q ss_pred             HHhc
Q 024021          235 VLQP  238 (274)
Q Consensus       235 ~l~~  238 (274)
                      .++.
T Consensus       299 ~L~~  302 (359)
T 4fzv_A          299 AIEL  302 (359)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5554

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.26  E-value=4.9e-06  Score=75.76  Aligned_cols=122  Identities=18%  Similarity=0.166  Sum_probs=83.9

Q ss_pred             CCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----C-----------CCeEEEEeCChHHHHHHHHHhhcCCC
Q 024021           92 GQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPN  155 (274)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~  155 (274)
                      -+|...+.-++... ..++.+|+|.+||+|.++..+.+    .           ...++|+|+++.+...|+-+....+.
T Consensus       200 yTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          200 YTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            35555555454443 33456999999999999876643    1           24699999999999999988766554


Q ss_pred             CcceEEEEcccCCC-----CCCCCeeEEEecccccccCh--------------hHHHHHHHHHHhccc-------CCcEE
Q 024021          156 AKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAIEP--------------EMRAAWAQKIKDFLK-------PDGEL  209 (274)
Q Consensus       156 ~~~~~~~~~d~~~~-----~~~~~~D~v~~~~~~~~~~~--------------~~~~~~l~~~~~~L~-------pgG~~  209 (274)
                       +...+..+|....     ....+||+|+++.++..-..              ..-..++..+.+.|+       +||++
T Consensus       280 -~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~  358 (530)
T 3ufb_A          280 -EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA  358 (530)
T ss_dssp             -SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred             -ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence             2356777877642     12347999999999853211              111356777888776       79998


Q ss_pred             EEEEc
Q 024021          210 ITLMF  214 (274)
Q Consensus       210 ~~~~~  214 (274)
                      .++..
T Consensus       359 avVlP  363 (530)
T 3ufb_A          359 AVVVP  363 (530)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.22  E-value=4.5e-06  Score=69.12  Aligned_cols=140  Identities=21%  Similarity=0.159  Sum_probs=81.6

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEc-ccCCCC
Q 024021           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKA-DFFTWC  170 (274)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~-d~~~~~  170 (274)
                      ..+.++.+.. ..++.+|||+||++|.++..+++. +. .|+|+|+.......+.. ...  ...++ .+... |+.. .
T Consensus        68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di~~-l  143 (300)
T 3eld_A           68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNVFT-M  143 (300)
T ss_dssp             HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCTTT-S
T ss_pred             HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCceeee-c
Confidence            3344444433 345679999999999999999973 44 78999996532100000 000  01122 23222 3332 3


Q ss_pred             CCCCeeEEEeccccc----ccChhHHHHHHHHHHhcccCC-cEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          171 PTELFDLIFDYTFFC----AIEPEMRAAWAQKIKDFLKPD-GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~----~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ..+++|+|++.....    ..+......+++-+.++|+|| |.|++-.|.+.        .....++.+.|+.. |..+.
T Consensus       144 ~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~y--------G~~~~~ll~~lk~~-F~~V~  214 (300)
T 3eld_A          144 PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPY--------HPDVIEKLERLQLR-FGGGI  214 (300)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTT--------SHHHHHHHHHHHHH-HCCEE
T ss_pred             CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccc--------CccHHHHHHHHHHh-CCcEE
Confidence            346899999976655    111111124477778999999 99999887532        11345566666654 66555


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       215 ~~K  217 (300)
T 3eld_A          215 VRV  217 (300)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=98.22  E-value=9.2e-06  Score=68.13  Aligned_cols=126  Identities=19%  Similarity=0.170  Sum_probs=80.8

Q ss_pred             CCeEEEEcCCcchhHHHhh------CCCC--eEEEEeCCh------------HHHHHHHHHhhc-CCCCcceEEEEcccC
Q 024021          109 KGRALVPGCGTGYDVVAMA------SPER--YVVGLEISD------------IAIKKAEELSSS-LPNAKFVSFLKADFF  167 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~------~~~~--~v~~vD~~~------------~~~~~a~~~~~~-~~~~~~~~~~~~d~~  167 (274)
                      .-+|||+|-|+|.+.....      .+..  +++.+|..+            +.........+. .+..-.+++..+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3589999999999864322      1333  567777521            112222222221 111124577888987


Q ss_pred             CC---CCCCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          168 TW---CPTELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       168 ~~---~~~~~~D~v~~~~~~~~~~~~~~-~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      +.   .....||+|+..+.-..-.++.+ ..+++.++++++|||.+...+              ....++..|+++||.+
T Consensus       177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt--------------aag~VRR~L~~aGF~V  242 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS--------------SSLSVRKSLLTLGFKV  242 (308)
T ss_dssp             HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC--------------CCHHHHHHHHHTTCEE
T ss_pred             HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe--------------CcHHHHHHHHHCCCEE
Confidence            62   23347999997654322233322 578999999999999987644              4678999999999999


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      .++.-
T Consensus       243 ~k~~G  247 (308)
T 3vyw_A          243 GSSRE  247 (308)
T ss_dssp             EEEEC
T ss_pred             EecCC
Confidence            87654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.12  E-value=4.5e-06  Score=67.62  Aligned_cols=111  Identities=18%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcc---eEEEEc-ccCCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKF---VSFLKA-DFFTWC  170 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~---~~~~~~-d~~~~~  170 (274)
                      +.++-+.. ..++.+|||+||+.|.|+.++++.  ...|.|.++....     ...+.......   +.|.++ |+++..
T Consensus        62 L~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-----~~~P~~~~~~Gv~~i~~~~G~Df~~~~  136 (269)
T 2px2_A           62 LRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-----HEEPMLMQSYGWNIVTMKSGVDVFYKP  136 (269)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-----SCCCCCCCSTTGGGEEEECSCCGGGSC
T ss_pred             HHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-----ccCCCcccCCCceEEEeeccCCccCCC
Confidence            44444333 456789999999999999999884  2244555443220     00011100012   355557 998743


Q ss_pred             CCCCeeEEEecccccccCh---hH--HHHHHHHHHhcccCCc-EEEEEEcc
Q 024021          171 PTELFDLIFDYTFFCAIEP---EM--RAAWAQKIKDFLKPDG-ELITLMFP  215 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~---~~--~~~~l~~~~~~L~pgG-~~~~~~~~  215 (274)
                       ..++|+|+|...-. -..   +.  .-.+++-+.++|+||| -|++-.|.
T Consensus       137 -~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          137 -SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             -CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             -CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence             45799999976543 211   11  1125777779999999 88887765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.09  E-value=6e-05  Score=60.21  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=76.3

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCCC
Q 024021           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWCP  171 (274)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~  171 (274)
                      ..+..+.+.. ..++.+|||+||++|.++.+++. .+. .|+|+|+...-.+..+ ..+..++ +.++|..+ |++...+
T Consensus        65 ~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv~~~~~  142 (267)
T 3p8z_A           65 AKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDVFYLPP  142 (267)
T ss_dssp             HHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCGGGCCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccceeecCC
Confidence            3344544443 34567999999999999997776 455 7999999654221000 0112222 46999999 9866444


Q ss_pred             CCCeeEEEecccccccCh----hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          172 TELFDLIFDYTFFCAIEP----EMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                       .++|+|+|...-..-.+    ...-.+|+-+.++|++ |-+++-.+.+.
T Consensus       143 -~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          143 -EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             -CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             -ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence             67999999755432221    1123477888899998 78887766553

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.09  E-value=6.4e-06  Score=69.48  Aligned_cols=61  Identities=23%  Similarity=0.178  Sum_probs=52.2

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      .+...+..++.....++..|||++||+|..+..+++.|.+++|+|+++.+++.|++++...
T Consensus       220 ~p~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3456666777665667889999999999999999999999999999999999999988653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.03  E-value=5.2e-05  Score=62.59  Aligned_cols=118  Identities=18%  Similarity=0.156  Sum_probs=75.9

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCCCC
Q 024021           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC  170 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~  170 (274)
                      ...+..+.+.. ..++.+|||+||++|.++.+++. .+. .|+|+|+...-.+..+ ..+..++ +-+.+..+ |+....
T Consensus        80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l~  157 (321)
T 3lkz_A           80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYRP  157 (321)
T ss_dssp             HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhCC
Confidence            34455555543 34557999999999999997766 555 7999999654110000 0011111 23788887 887655


Q ss_pred             CCCCeeEEEecccccccChh-----HHHHHHHHHHhcccCC-cEEEEEEccC
Q 024021          171 PTELFDLIFDYTFFCAIEPE-----MRAAWAQKIKDFLKPD-GELITLMFPI  216 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~-----~~~~~l~~~~~~L~pg-G~~~~~~~~~  216 (274)
                      + .++|+|+|.-. +.-+..     ..-.+|+-+.++|++| |-+++-.+.+
T Consensus       158 ~-~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          158 S-ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             C-CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             C-CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            4 66999998655 332221     1134778888999999 8888877655

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.86  E-value=0.00032  Score=59.94  Aligned_cols=141  Identities=11%  Similarity=0.155  Sum_probs=100.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC--------------------C
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--------------------N  155 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~--------------------~  155 (274)
                      +.+++..  .+...|+.+|||.......+..  ++..++-+|+ |+.++.-++.+...+                    .
T Consensus        89 v~~fl~~--~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           89 ILEFLVA--NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             HHHHHHH--CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHH--CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            4444442  2347899999999999988876  4567888887 888877777655431                    1


Q ss_pred             CcceEEEEcccCCC---------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---C-C--
Q 024021          156 AKFVSFLKADFFTW---------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---D-H--  219 (274)
Q Consensus       156 ~~~~~~~~~d~~~~---------~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---~-~--  219 (274)
                      .++..++.+|+.+.         . ......++++-+++.|++++....+++.+.+.. |+|.+++.+.-..   . .  
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg  244 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFG  244 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHH
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHH
Confidence            35789999999871         1 234678999999999999999999999999877 6777765554322   1 0  


Q ss_pred             --------C-CCCCc-----ccCHHHHHHHHhcCCCc
Q 024021          220 --------V-GGPPY-----KVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       220 --------~-~~~~~-----~~~~~~~~~~l~~~Gf~  242 (274)
                              . .+.++     ..++++..+.|.++||.
T Consensus       245 ~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          245 AIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             HHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence                    0 11111     13788899999999997

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.75  E-value=0.00027  Score=58.33  Aligned_cols=126  Identities=17%  Similarity=0.112  Sum_probs=81.6

Q ss_pred             HHHHHhcC---CCCCCeEEEEcC------CcchhHH-HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024021           98 IVHLHQSG---ALPKGRALVPGC------GTGYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus        98 ~~~~~~~~---~~~~~~vLDiG~------G~G~~~~-~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  167 (274)
                      +.+++...   ...+++|||+|+      ..|.... .+...|..++++|+.+-.         .    +...++++|..
T Consensus        96 lcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~---------s----da~~~IqGD~~  162 (344)
T 3r24_A           96 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFV---------S----DADSTLIGDCA  162 (344)
T ss_dssp             HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCB---------C----SSSEEEESCGG
T ss_pred             HHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccc---------c----CCCeEEEcccc
Confidence            55566432   223589999996      6666432 233345799999997631         1    11255999987


Q ss_pred             CCCCCCCeeEEEeccccc---ccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024021          168 TWCPTELFDLIFDYTFFC---AIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       168 ~~~~~~~~D~v~~~~~~~---~~~------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (274)
                      ......+||+|++-..-.   +.+      ......+++-+.+.|+|||-|++-.|...          ..+++.++.+ 
T Consensus       163 ~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs----------g~~~L~~lrk-  231 (344)
T 3r24_A          163 TVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------WNADLYKLMG-  231 (344)
T ss_dssp             GEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------CCHHHHHHHT-
T ss_pred             ccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC----------CHHHHHHHHh-
Confidence            755567899999864321   111      12356778888999999999999886553          2245555554 


Q ss_pred             CCCcEEEEee
Q 024021          239 MGFQAISIVD  248 (274)
Q Consensus       239 ~Gf~~~~~~~  248 (274)
                       -|..++...
T Consensus       232 -~F~~VK~fK  240 (344)
T 3r24_A          232 -HFSWWTAFV  240 (344)
T ss_dssp             -TEEEEEEEE
T ss_pred             -hCCeEEEEC
Confidence             588777763

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.75  E-value=0.0016  Score=55.04  Aligned_cols=134  Identities=7%  Similarity=-0.009  Sum_probs=99.2

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC---------CCCCCeeE
Q 024021          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW---------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~---------~~~~~~D~  177 (274)
                      ..|+++|||-=.....+.. .+.+++-+| .|..++..++.+...+  ...+..++.+|+.+.         ......-+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            5799999998777666664 357899999 4999999988886432  236789999999861         11234568


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCC-------CCccc--C-HHHH
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGG-------PPYKV--S-VSDY  232 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---------------~~~-------~~~~~--~-~~~~  232 (274)
                      +++-++++|++++....+++.+...+.||+.+++........               ..|       .++..  + .+++
T Consensus       183 ~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~  262 (310)
T 2uyo_A          183 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVV  262 (310)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCH
T ss_pred             EEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChHHH
Confidence            888899999999888999999999999999888866544211               112       12222  5 7889


Q ss_pred             HHHHhcCCCcEE
Q 024021          233 EEVLQPMGFQAI  244 (274)
Q Consensus       233 ~~~l~~~Gf~~~  244 (274)
                      .+.|.++||+.+
T Consensus       263 ~~~f~~~G~~~~  274 (310)
T 2uyo_A          263 ADWLNRHGWRAT  274 (310)
T ss_dssp             HHHHTTTTEEEE
T ss_pred             HHHHHHCcCccc
Confidence            999999999887

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.75  E-value=5.5e-05  Score=62.43  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024021           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      ..+...+..++.....++..|||..||+|..+..+.+.|.+++|+|+++..++.+++++...+
T Consensus       196 ~~p~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          196 PKPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            344566667776656678899999999999999999999999999999999999999986543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.68  E-value=6.4e-05  Score=62.19  Aligned_cols=123  Identities=15%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~v~~~~  182 (274)
                      .+..+||+-+|+|.+++.+.+.+.+++.+|.++..+...++++...   .+++++..|...     ..+..+||+|+...
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---CcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            3567899999999999999987779999999999999999998652   579999999765     23445799999988


Q ss_pred             cccccChhHHHHHHHHHHh--cccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          183 FFCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      .++.-  +....+++.+.+  .+.|+|++++-- +...       .-..+.+.+.+++.|...
T Consensus       168 PYe~k--~~~~~vl~~L~~~~~r~~~Gi~v~WY-Pi~~-------~~~~~~~~~~l~~~~~~~  220 (283)
T 2oo3_A          168 SYERK--EEYKEIPYAIKNAYSKFSTGLYCVWY-PVVN-------KAWTEQFLRKMREISSKS  220 (283)
T ss_dssp             CCCST--THHHHHHHHHHHHHHHCTTSEEEEEE-EESS-------HHHHHHHHHHHHHHCSSE
T ss_pred             CCCCC--cHHHHHHHHHHHhCccCCCeEEEEEE-eccc-------hHHHHHHHHHHHhcCCCe
Confidence            88742  244555655555  456788776632 2111       013456666676666633

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.49  E-value=0.00024  Score=60.98  Aligned_cols=124  Identities=16%  Similarity=0.058  Sum_probs=78.8

Q ss_pred             CeEEEEcCCcchhHHHhhCCC--C-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----CCeeEEEecc
Q 024021          110 GRALVPGCGTGYDVVAMASPE--R-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~D~v~~~~  182 (274)
                      .+++|+.||.|.+...+...|  + .++++|+++.+++..+.+.+      +..++.+|+.+....    ..+|+++...
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            589999999999999998877  3 69999999999999999974      245678888774321    2689999887


Q ss_pred             cccccCh--------hHHHHHHH---HHHhccc--CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          183 FFCAIEP--------EMRAAWAQ---KIKDFLK--PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       183 ~~~~~~~--------~~~~~~l~---~~~~~L~--pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ....++.        +.+..++.   ++.+.++  |.  +++.+....-.     ...+.+.+.+.|++.||.+...
T Consensus        77 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~  146 (343)
T 1g55_A           77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEF  146 (343)
T ss_dssp             C------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEE
T ss_pred             CCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcccc-----CHHHHHHHHHHHHHCCCeeEEE
Confidence            7444321        11111223   3444455  54  33333222100     0124578889999999987653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.48  E-value=0.001  Score=57.79  Aligned_cols=123  Identities=12%  Similarity=-0.053  Sum_probs=80.1

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---------CCCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~D~v~  179 (274)
                      .+++|+.||.|.++..+...|+ .+.++|+++.+++..+.+.+      +..++.+|+.+..         ....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            5899999999999999988888 46799999999999888863      4667888887632         245799999


Q ss_pred             ecccccccCh-------hHHHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          180 DYTFFCAIEP-------EMRAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~-------~~~~~~l---~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ....-..++.       +.+..++   -++.+.++|.  +++.+....-..  .......+.+. .|++.||.+
T Consensus        77 ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~--~~v~ENV~gl~s--~~~~~~~~~i~-~l~~~GY~v  145 (376)
T 3g7u_A           77 GGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPL--FFLAENVPGIMQ--EKYSGIRNKAF-NLVSGDYDI  145 (376)
T ss_dssp             ECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCS--EEEEEECTTTTC--GGGHHHHHHHH-HHHHTTEEE
T ss_pred             ecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCC--EEEEecchHhhc--cCcHHHHHHHH-HHHcCCCcc
Confidence            8766544421       1122222   2344446774  444443222110  00011245666 888999988

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.47  E-value=0.00079  Score=57.00  Aligned_cols=72  Identities=18%  Similarity=0.099  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC----CCCe
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP----TELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~----~~~~  175 (274)
                      ..++..++|..||.|..+..+++   +..+|+|+|.++.+++.++ ++  .  .++++++.+++.+.   ..    .+++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            35678999999999999998887   3569999999999999994 43  1  36899999998772   11    1369


Q ss_pred             eEEEecc
Q 024021          176 DLIFDYT  182 (274)
Q Consensus       176 D~v~~~~  182 (274)
                      |.|+...
T Consensus       130 DgILfDL  136 (347)
T 3tka_A          130 DGILLDL  136 (347)
T ss_dssp             EEEEEEC
T ss_pred             cEEEECC
Confidence            9999743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.28  E-value=8e-05  Score=78.95  Aligned_cols=133  Identities=16%  Similarity=0.120  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---C----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---P----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~  177 (274)
                      .+..+|||+|.|+|..+..+.+   .    -.+++..|+++...+.+++++...    ++..-..|..++  .....||+
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence            3457999999999987654332   1    127899999988877777665431    133222233221  12456999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC----CC--------CCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD----HV--------GGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      |++..+++..  ......+.+++++|+|||++++.+.....    ..        .+.+ ..+.++|.++|+..||..+.
T Consensus      1315 via~~vl~~t--~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~~~~-~~~~~~w~~~l~~~gf~~~~ 1391 (2512)
T 2vz8_A         1315 LVCNCALATL--GDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQGGRH-LLSQDQWESLFAGASLHLVA 1391 (2512)
T ss_dssp             EEEECC----------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEE
T ss_pred             EEEccccccc--ccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccccccCCc-ccCHHHHHHHHHhCCCceee
Confidence            9999998754  23456789999999999998886532100    00        0011 24667888889999998876


Q ss_pred             E
Q 024021          246 I  246 (274)
Q Consensus       246 ~  246 (274)
                      .
T Consensus      1392 ~ 1392 (2512)
T 2vz8_A         1392 L 1392 (2512)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.23  E-value=0.0023  Score=54.43  Aligned_cols=125  Identities=14%  Similarity=-0.029  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~  185 (274)
                      +.+++|+.||.|.+...+...|+ .+.++|+++.+++..+.+.+...        .+|+.+...  -..+|+|+......
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            47899999999999999988888 58889999999999999875431        577776322  13589999876655


Q ss_pred             ccCh------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEP------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      .++.            .....++ ++.+.++|.  +++.+....-...  ......+.+.+.|++.||.+...
T Consensus        83 ~fS~ag~~~g~~d~r~~L~~~~~-r~i~~~~P~--~~~~ENV~gl~~~--~~~~~~~~i~~~l~~~GY~v~~~  150 (327)
T 2c7p_A           83 AFSISGKQKGFEDSRGTLFFDIA-RIVREKKPK--VVFMENVKNFASH--DNGNTLEVVKNTMNELDYSFHAK  150 (327)
T ss_dssp             TTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCS--EEEEEEEGGGGTG--GGGHHHHHHHHHHHHTTBCCEEE
T ss_pred             CcchhcccCCCcchhhHHHHHHH-HHHHhccCc--EEEEeCcHHHHhc--cccHHHHHHHHHHHhCCCEEEEE
Confidence            4421            1223333 344456775  3444422211100  00113567888999999887544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.17  E-value=0.00065  Score=58.33  Aligned_cols=56  Identities=18%  Similarity=0.021  Sum_probs=49.1

Q ss_pred             CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +..|||||.|.|.++..|++.  +.+++++|+++..+...++.. ..   ++++++.+|+.+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECCccc
Confidence            478999999999999999974  569999999999999998876 22   579999999976

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.13  E-value=0.00035  Score=65.70  Aligned_cols=125  Identities=19%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             CCeEEEEcCCcchhHHHhhC------------CC--CeEEEEeC---ChHHHHHHHHH-----------hhcCC------
Q 024021          109 KGRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEEL-----------SSSLP------  154 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------------~~--~~v~~vD~---~~~~~~~a~~~-----------~~~~~------  154 (274)
                      ..+|+|+|.|+|.+.+.+.+            ..  .+++.+|.   +.+.+..+-..           .....      
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            46999999999998765533            11  47999999   44444433211           11110      


Q ss_pred             ----C---CcceEEEEcccCCCCC------CCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024021          155 ----N---AKFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHV  220 (274)
Q Consensus       155 ----~---~~~~~~~~~d~~~~~~------~~~~D~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~~~~~~~~~~~~~  220 (274)
                          +   ...+++..+|+.+..+      ...+|.++..++-..-.++. ...++..+.++++|||.+....       
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~-------  211 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT-------  211 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence                0   1256778888876221      36799999755422221121 1567899999999999876533       


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          221 GGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                             ....+++.+.++||.+..+.
T Consensus       212 -------~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          212 -------AAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             -------CCHHHHHHHHHTTCEEEEEE
T ss_pred             -------CcHHHHHHHHhCCeEEEecc
Confidence                   34688999999999988765

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.08  E-value=0.0017  Score=55.27  Aligned_cols=128  Identities=10%  Similarity=-0.057  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC---eE-EEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024021          109 KGRALVPGCGTGYDVVAMASPER---YV-VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~---~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~  180 (274)
                      ..+++|+.||.|.+...+...|.   .+ .++|+++.+++..+.+.+..       ++.+|+.+..+    ...+|+++.
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhccCCCCEEEe
Confidence            46899999999999999988773   45 69999999999999887432       45678776322    226899998


Q ss_pred             ccccccc--C--------hhHHHHHHHHHHh-cccC---CcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          181 YTFFCAI--E--------PEMRAAWAQKIKD-FLKP---DGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       181 ~~~~~~~--~--------~~~~~~~l~~~~~-~L~p---gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ...-..+  +        .+.+..++..+.+ +++.   .-.+++.+....-..     ....+.+.+.|++.||.+...
T Consensus        83 gpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-----~~~~~~i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A           83 SPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-----SLVFKEIYNILIKNQYYIKDI  157 (327)
T ss_dssp             CCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-----SHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-----hHHHHHHHHHHHhCCCEEEEE
Confidence            7664444  1        1122233444444 4332   234555553332110     114678889999999987654


Q ss_pred             ee
Q 024021          247 VD  248 (274)
Q Consensus       247 ~~  248 (274)
                      .-
T Consensus       158 vl  159 (327)
T 3qv2_A          158 IC  159 (327)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.00  E-value=0.0011  Score=62.27  Aligned_cols=125  Identities=18%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC------------CC--CeEEEEeC---ChHHHHHHHHH-----------hhcCCC-----
Q 024021          109 KGRALVPGCGTGYDVVAMAS------------PE--RYVVGLEI---SDIAIKKAEEL-----------SSSLPN-----  155 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------------~~--~~v~~vD~---~~~~~~~a~~~-----------~~~~~~-----  155 (274)
                      .-+|+|+|.|+|.+.....+            ..  .+++++|.   +++.+..+-..           ......     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            35999999999998764432            12  36999999   76666644332           111110     


Q ss_pred             --------CcceEEEEcccCCCCC------CCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024021          156 --------AKFVSFLKADFFTWCP------TELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHV  220 (274)
Q Consensus       156 --------~~~~~~~~~d~~~~~~------~~~~D~v~~~~~~~~~~~~~~-~~~l~~~~~~L~pgG~~~~~~~~~~~~~  220 (274)
                              ...+++..+|+.+..+      ...||+++....-....++.+ ..++..+.++++|||.+....       
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~-------  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT-------  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-------
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence                    1235566777765221      357999997654332222222 567899999999999876543       


Q ss_pred             CCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          221 GGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                             ....+++.++++||.+....
T Consensus       220 -------~~~~vr~~L~~aGf~v~~~~  239 (676)
T 3ps9_A          220 -------SAGFVRRGLQDAGFTMQKRK  239 (676)
T ss_dssp             -------CCHHHHHHHHHHTCEEEEEE
T ss_pred             -------CcHHHHHHHHhCCeEEEecc
Confidence                   34688999999999987754

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.99  E-value=0.026  Score=48.04  Aligned_cols=141  Identities=14%  Similarity=0.114  Sum_probs=94.3

Q ss_pred             CCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCC----------------------CCcceEEEE
Q 024021          109 KGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLP----------------------NAKFVSFLK  163 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~----------------------~~~~~~~~~  163 (274)
                      ...|+-+|||-=.....+...   +..++=+|+ |+.++.=++.+...+                      ...+.+++.
T Consensus        91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            468999999987666666543   557888887 555554333332100                      135789999


Q ss_pred             cccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------CC
Q 024021          164 ADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------VG  221 (274)
Q Consensus       164 ~d~~~~-----------~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----------~~  221 (274)
                      +|+.+.           ......-++++-+++.|++++....+++.+.+... +|.+++.+.-..+.           ..
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d~fg~~M~~~l~~~  248 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGDRFGQIMIENLRRR  248 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTSHHHHHHHHHHHTT
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCCHHHHHHHHHHHHh
Confidence            999761           23345678888899999999999999999998765 55555555432221           11


Q ss_pred             CCCc-----ccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          222 GPPY-----KVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       222 ~~~~-----~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      |.+.     ..+.+...+.+.++||..+...+...
T Consensus       249 g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~  283 (334)
T 3iei_A          249 QCDLAGVETCKSLESQKERLLSNGWETASAVDMME  283 (334)
T ss_dssp             TCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHHH
T ss_pred             CCCCcccccCCCHHHHHHHHHHcCCCcceeecHHH
Confidence            2221     24778889999999999977665433

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.90  E-value=0.01  Score=48.44  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEe-----CCh----------------------HHHHHHH---
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLE-----ISD----------------------IAIKKAE---  147 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~vD-----~~~----------------------~~~~~a~---  147 (274)
                      .-++.|+|+|+-.|..+..++.         ...+++++|     ..+                      +.+....   
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            3457999999999998877543         246899999     221                      1112111   


Q ss_pred             HHhhcCCC-CcceEEEEcccCCC-------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024021          148 ELSSSLPN-AKFVSFLKADFFTW-------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (274)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~d~~~~-------~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~  219 (274)
                      ++....+. .++++++.+++.+.       .+..++|+|+.-.-.    .+....+++.+...|+|||++++-++...  
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~~GGvIv~DD~~~~--  221 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLTKGSIVAFDELDNP--  221 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEEEEEEEEESSTTCT--
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhCCCcEEEEcCCCCC--
Confidence            11222333 37899999999872       234579999965532    13345678999999999999998665321  


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          220 VGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                          .+.--..-+.+.+...|.++....
T Consensus       222 ----~w~G~~~A~~ef~~~~~~~i~~~p  245 (257)
T 3tos_A          222 ----KWPGENIAMRKVLGLDHAPLRLLP  245 (257)
T ss_dssp             ----TCTHHHHHHHHHTCTTSSCCEECT
T ss_pred             ----CChHHHHHHHHHHhhCCCeEEEcc
Confidence                111135667777888887766553

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.90  E-value=0.0019  Score=54.87  Aligned_cols=64  Identities=9%  Similarity=-0.045  Sum_probs=55.0

Q ss_pred             CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC
Q 024021           91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP  154 (274)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~  154 (274)
                      ...+...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|+++..++.+++++...+
T Consensus       235 ~~kp~~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          235 ARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             SCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CcCCHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            3455677777777666778999999999999999999999999999999999999999987654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.82  E-value=0.0094  Score=50.59  Aligned_cols=126  Identities=13%  Similarity=0.034  Sum_probs=81.6

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~  186 (274)
                      ++|||+-||.|.+..-+.+.|. .+.++|+++.+++--+.+.+       -.++.+|+.+...  -..+|+++....-..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPSQS   73 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECCCCGGG
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEecCCCCC
Confidence            4799999999999999988888 56789999999988888863       3567889887322  246899997655433


Q ss_pred             c---------Ch---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          187 I---------EP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       187 ~---------~~---~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +         .+   .....+ -++.+.++|.  +++.+....-..  .........+.+.|++.||.+....
T Consensus        74 fS~ag~~~g~~d~R~~L~~~~-~r~i~~~~Pk--~~~~ENV~gl~~--~~~~~~~~~i~~~l~~~GY~v~~~v  141 (331)
T 3ubt_Y           74 WSEGGSLRGIDDPRGKLFYEY-IRILKQKKPI--FFLAENVKGMMA--QRHNKAVQEFIQEFDNAGYDVHIIL  141 (331)
T ss_dssp             TEETTEECCTTCGGGHHHHHH-HHHHHHHCCS--EEEEEECCGGGG--CTTSHHHHHHHHHHHHHTEEEEEEE
T ss_pred             cCCCCCccCCCCchhHHHHHH-HHHHhccCCe--EEEeeeeccccc--ccccchhhhhhhhhccCCcEEEEEe
Confidence            3         11   112233 3445556885  444443221110  0111246788888999999875443

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.61  E-value=0.026  Score=41.37  Aligned_cols=109  Identities=17%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             CeEEEEcCCc-chhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEecc
Q 024021          110 GRALVPGCGT-GYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~-G~~~-~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~~  182 (274)
                      .+|+=+|||. |... ..|.+.|..|+++|.+++.++.++..        .+.++.+|..+.     .....+|+|++. 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~--------g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-   78 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER--------GVRAVLGNAANEEIMQLAHLECAKWLILT-   78 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEESCTTSHHHHHHTTGGGCSEEEEC-
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc--------CCCEEECCCCCHHHHHhcCcccCCEEEEE-
Confidence            5788888864 2222 23334789999999999988877642        267788888762     122468888843 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                          .+++.....+-...+.+.|+..++...              ...+..+.|++.|-..+-
T Consensus        79 ----~~~~~~n~~~~~~a~~~~~~~~iiar~--------------~~~~~~~~l~~~G~d~vi  123 (140)
T 3fwz_A           79 ----IPNGYEAGEIVASARAKNPDIEIIARA--------------HYDDEVAYITERGANQVV  123 (140)
T ss_dssp             ----CSCHHHHHHHHHHHHHHCSSSEEEEEE--------------SSHHHHHHHHHTTCSEEE
T ss_pred             ----CCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCCCEEE
Confidence                222222233344566677888777655              334556777888876543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.61  E-value=0.0029  Score=53.64  Aligned_cols=62  Identities=16%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCCh---HHHHHHHHHhhcC
Q 024021           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISD---IAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~---~~~~~a~~~~~~~  153 (274)
                      ..+...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|+++   ..++.+++++...
T Consensus       226 ~kp~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          226 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            4456667777776667789999999999999999998899999999999   9999999998654

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.57  E-value=0.0025  Score=54.35  Aligned_cols=125  Identities=14%  Similarity=0.009  Sum_probs=81.0

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEecc
Q 024021          110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYT  182 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~  182 (274)
                      .+++|+.||.|.+...+...|.   .+.++|+++.+++..+.+.+.      ..++.+|+.+..+    ...+|+++...
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhccCCCCEEEecC
Confidence            4799999999999998887664   578999999999998888743      4466788876322    23689999865


Q ss_pred             cccccC---------hh---HHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIE---------PE---MRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~---------~~---~~~~~l~~~~~~L~-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      .-..++         ++   ....++ ++.+.++ |  .+++.+....-..     ....+.+.+.|++.||.+....-
T Consensus        78 PCQ~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~~P--~~~vlENV~gl~~-----~~~~~~i~~~l~~~GY~v~~~vl  148 (333)
T 4h0n_A           78 PCQPFTRNGKYLDDNDPRTNSFLYLI-GILDQLDNV--DYILMENVKGFEN-----STVRNLFIDKLKECNFIYQEFLL  148 (333)
T ss_dssp             CCCCSEETTEECCTTCTTSCCHHHHH-HHGGGCTTC--CEEEEEECTTGGG-----SHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CCcchhhhhhccCCcCcccccHHHHH-HHHHHhcCC--CEEEEecchhhhh-----hhHHHHHHHHHHhCCCeEEEEEe
Confidence            544331         11   122222 3334444 5  4555553332110     11357899999999998865443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.22  E-value=0.013  Score=49.03  Aligned_cols=92  Identities=12%  Similarity=0.136  Sum_probs=58.5

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccCh------------------hHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP------------------EMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~~------------------~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      .+++++++|..+   ..++++||+|+++..+.....                  .....++..+.++|+|||.+++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            457899999987   345678999999988753210                  11245778899999999999886532


Q ss_pred             CCCC--CCCCCcccC-HHHHHHHHhcCCCcEEEEee
Q 024021          216 ISDH--VGGPPYKVS-VSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       216 ~~~~--~~~~~~~~~-~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ....  ..+...... ...+..+++++||......-
T Consensus       100 ~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~ii  135 (297)
T 2zig_A          100 VAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPII  135 (297)
T ss_dssp             EEEECC----EEEECHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CccccccCCcccccccHHHHHHHHHHcCCeeeccEE
Confidence            1100  001000011 25688889999998876443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.09  E-value=0.11  Score=37.73  Aligned_cols=105  Identities=15%  Similarity=0.004  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+|+=+|+|  ..+..++    +.|.+|+++|.+++.++.++..        ...++.+|..+.     .....+|+|+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            3578889885  4554444    4789999999999988777642        266788888762     1234689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ....     ++.....+....+.+. ...++...              +..+..+.++..|...
T Consensus        76 ~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~--------------~~~~~~~~l~~~G~~~  119 (141)
T 3llv_A           76 ITGS-----DDEFNLKILKALRSVS-DVYAIVRV--------------SSPKKKEEFEEAGANL  119 (141)
T ss_dssp             ECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE--------------SCGGGHHHHHHTTCSE
T ss_pred             EecC-----CHHHHHHHHHHHHHhC-CceEEEEE--------------cChhHHHHHHHcCCCE
Confidence            5332     2222233344445555 55565544              2234445667777653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=96.06  E-value=0.032  Score=49.88  Aligned_cols=127  Identities=12%  Similarity=-0.018  Sum_probs=79.3

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024021          110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------  171 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------------  171 (274)
                      .+++|+-||.|.+...+...|. .+.++|+++.+++.-+.+....   +...++.+|+.+...                 
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            5899999999999999988888 5889999999988888876322   234566788765221                 


Q ss_pred             -CCCeeEEEecccccccChh---------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCH
Q 024021          172 -TELFDLIFDYTFFCAIEPE---------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSV  229 (274)
Q Consensus       172 -~~~~D~v~~~~~~~~~~~~---------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~  229 (274)
                       ...+|+++.......++..                     ....+ -++.+.++|.  +++.+....-...  ......
T Consensus       166 ~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~-~riI~~~rPk--~fvlENV~gl~s~--~~g~~f  240 (482)
T 3me5_A          166 HIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDV-VRIIDARRPA--MFVLENVKNLKSH--DKGKTF  240 (482)
T ss_dssp             HSCCCSEEEEECCCCCC------------------CTTTTSHHHHH-HHHHHHHCCS--EEEEEEETTTTTG--GGGHHH
T ss_pred             cCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHH-HHHHHHcCCc--EEEEeCcHHHhcc--cCCcHH
Confidence             1358999987654443210                     11222 2333445664  4444433221100  011135


Q ss_pred             HHHHHHHhcCCCcEE
Q 024021          230 SDYEEVLQPMGFQAI  244 (274)
Q Consensus       230 ~~~~~~l~~~Gf~~~  244 (274)
                      ..+.+.|++.||.+.
T Consensus       241 ~~i~~~L~~lGY~v~  255 (482)
T 3me5_A          241 RIIMQTLDELGYDVA  255 (482)
T ss_dssp             HHHHHHHHHTTEEET
T ss_pred             HHHHHHHhcCCcEEE
Confidence            688889999998763

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.79  E-value=0.022  Score=47.59  Aligned_cols=71  Identities=13%  Similarity=-0.011  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCe---EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----CCCeeEEE
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERY---VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----TELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~D~v~  179 (274)
                      ...+++|+-||.|.+...+...|.+   +.++|+++.+++..+.+.+      ...+..+|+.+...     .+.+|+++
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEEE
Confidence            3469999999999999999888875   4899999999888877763      34577888877322     13689999


Q ss_pred             ecccc
Q 024021          180 DYTFF  184 (274)
Q Consensus       180 ~~~~~  184 (274)
                      .....
T Consensus        89 ggpPC   93 (295)
T 2qrv_A           89 GGSPC   93 (295)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            86543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.64  E-value=0.019  Score=50.33  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhh-C-C--CCeEEEEeCChHHHHHHHHHhhc--CCCC-cceEEEEccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMA-S-P--ERYVVGLEISDIAIKKAEELSSS--LPNA-KFVSFLKADF  166 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~-~-~--~~~v~~vD~~~~~~~~a~~~~~~--~~~~-~~~~~~~~d~  166 (274)
                      .++..++|+||+.|..+..++ + .  ..+|+++|.+|...+..+++...  ++.. ++++++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence            456899999999999998877 3 2  26999999999999999999876  3223 5666665443

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.63  E-value=0.017  Score=49.04  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=59.9

Q ss_pred             cceEEEEcccCC---CCCCCCeeEEEecccccccC------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC
Q 024021          157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIE------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVG  221 (274)
Q Consensus       157 ~~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~~------------~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~  221 (274)
                      ....++.+|..+   ..+.++||+|++...+....            ......++..+.++|+|||.+++..-....  .
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~--~   90 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYM--K   90 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEE--T
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEec--C
Confidence            457889999865   35577899999998875321            024567888999999999999887632200  0


Q ss_pred             CCCcc--cCHHHHHHHHhcCCCcEEEEee
Q 024021          222 GPPYK--VSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       222 ~~~~~--~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +.++.  .....+.++++..||.......
T Consensus        91 g~~~~~~~~~~~i~~~~~~~Gf~~~~~ii  119 (323)
T 1boo_A           91 GVPARSIYNFRVLIRMIDEVGFFLAEDFY  119 (323)
T ss_dssp             TEEEECCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCcccccchHHHHHHHHHhCCCEEEEEEE
Confidence            11111  1234566778899998876443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.40  E-value=0.0075  Score=52.08  Aligned_cols=92  Identities=14%  Similarity=0.161  Sum_probs=62.0

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D  176 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.       ..++..   |+.+    ... +.+|
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~vi~~~~~~~~~~~~~~~~-gg~D  260 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITD-GGVN  260 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTT-SCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-------CEEecCCccCHHHHHHHhcC-CCCc
Confidence            4568999999876 677777776 677 79999999999999876531       111221   1111    112 2799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..-.-        ...++...++|+++|.+++...
T Consensus       261 ~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          261 FALESTGS--------PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEECSCC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCC--------HHHHHHHHHHHhcCCEEEEeCC
Confidence            99853221        2356788999999999887653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.36  E-value=0.078  Score=45.16  Aligned_cols=91  Identities=19%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..++.+||-+|+|. |..+.++++ .|++|++++.+++..+.+++.-.     + . ++ .|....  ...+|+|+..-.
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~-~-v~-~~~~~~--~~~~D~vid~~g  243 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV-----K-H-FY-TDPKQC--KEELDFIISTIP  243 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC-----S-E-EE-SSGGGC--CSCEEEEEECCC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC-----C-e-ec-CCHHHH--hcCCCEEEECCC
Confidence            45678999999865 666667766 78899999999998888876321     1 1 12 222212  127999995432


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -.        ..++...++|+++|.+++...
T Consensus       244 ~~--------~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          244 TH--------YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred             cH--------HHHHHHHHHHhcCCEEEEECC
Confidence            11        135678899999999988654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.28  E-value=0.52  Score=33.70  Aligned_cols=87  Identities=15%  Similarity=0.046  Sum_probs=52.4

Q ss_pred             CeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      ++|+=+|+  |..+..+    .+.|.+|+++|.+++.++..+...       .+.++.+|..+.     .....+|+|+.
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHHcCcccCCEEEE
Confidence            57888877  5555444    347889999999998776655432       245666776541     11346898886


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      .-.     .+.....+..+.+.+.++ .+++
T Consensus        76 ~~~-----~~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           76 VTG-----KEEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             CCS-----CHHHHHHHHHHHHHTTCC-CEEE
T ss_pred             eeC-----CchHHHHHHHHHHHcCCC-EEEE
Confidence            532     222233445556667775 4444

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.25  E-value=0.059  Score=46.92  Aligned_cols=100  Identities=15%  Similarity=0.037  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---cc-CC----CCCCCC
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DF-FT----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~-~~----~~~~~~  174 (274)
                      ..++.+||-+|+|. |..+.++++ .|+ +|+++|.+++.++.+++.    +    .+.+..   |. .+    ......
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G----FETIDLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CcEEcCCCcchHHHHHHHHhCCCC
Confidence            34568999999876 777777776 688 999999999988887643    2    122221   11 11    111236


Q ss_pred             eeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+|+..-.-....  .    ......++...++|++||++++..
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            99999653322100  0    000134678889999999987654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.23  E-value=0.01  Score=50.78  Aligned_cols=94  Identities=14%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCe
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~  175 (274)
                      ..++.+||-+|+|. |..+.++++ .|+ +|+++|.+++.++.+++.-..       .++..   |+.+    ......+
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~v~~~t~g~g~  236 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-------DIINYKNGDIVEQILKATDGKGV  236 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-------EEECGGGSCHHHHHHHHTTTCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-------eEEcCCCcCHHHHHHHHcCCCCC
Confidence            34568999999865 566666666 787 899999999989988875321       12211   1111    2233469


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+|+....-        ...++...++|++||.++....
T Consensus       237 D~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          237 DKVVIAGGD--------VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             EEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC--------hHHHHHHHHHHhcCCEEEEecc
Confidence            999953221        1246778899999999887654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.20  E-value=0.43  Score=36.26  Aligned_cols=107  Identities=16%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCcchhHHHh----hCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----C-CCCCeeE
Q 024021          109 KGRALVPGCGTGYDVVAM----ASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----C-PTELFDL  177 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l----~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~-~~~~~D~  177 (274)
                      +.+|+=+|+|  ..+..+    .+. |..|+++|.+++.++.++..        .+..+.+|..+.     . ....+|+
T Consensus        39 ~~~v~IiG~G--~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~--------g~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           39 HAQVLILGMG--RIGTGAYDELRARYGKISLGIEIREEAAQQHRSE--------GRNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             TCSEEEECCS--HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT--------TCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCcEEEECCC--HHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC--------CCCEEEcCCCCHHHHHhccCCCCCCE
Confidence            4689988875  444333    346 88999999999887776532        145666776541     1 2346898


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      |+..-     +++.....+-...+.+.|++.++....              ..+..+.+++.|-..+
T Consensus       109 vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~--------------~~~~~~~l~~~G~~~v  156 (183)
T 3c85_A          109 VLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIAE--------------YPDQLEGLLESGVDAA  156 (183)
T ss_dssp             EEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEES--------------SHHHHHHHHHHTCSEE
T ss_pred             EEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEEC--------------CHHHHHHHHHcCCCEE
Confidence            88532     212222223345555677777776541              2233446666676654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.18  E-value=0.52  Score=38.43  Aligned_cols=128  Identities=12%  Similarity=-0.071  Sum_probs=74.8

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ++||=.|+  |..+..+++    .|.+|++++.++........        .+++++.+|+.+.. ...+|+|+......
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-~~~~d~vi~~a~~~   74 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-LDGVTHLLISTAPD   74 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-CTTCCEEEECCCCB
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-cCCCCEEEECCCcc
Confidence            58999994  888766654    78899999998765443322        24889999998855 56789999766544


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEE-EEEccCCCCCCC----------C--CcccCHHHHHHHHhcC-CCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELI-TLMFPISDHVGG----------P--PYKVSVSDYEEVLQPM-GFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~-~~~~~~~~~~~~----------~--~~~~~~~~~~~~l~~~-Gf~~~~~~~  248 (274)
                      .........+++.+.+.-..-+.++ +..........+          +  +|..++...++++... |+..+-+..
T Consensus        75 ~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~ilRp  151 (286)
T 3ius_A           75 SGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAVPNLPLHVFRL  151 (286)
T ss_dssp             TTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             ccccHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEec
Confidence            3322333445555444312223444 433222111111          1  1233455666777776 777665554

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.08  E-value=0.09  Score=45.03  Aligned_cols=96  Identities=15%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-----cccCC----CCCCC
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-----ADFFT----WCPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~----~~~~~  173 (274)
                      ..++.+||=+|+|. |..+.++++ .|++ |+++|.+++..+.+++. ...    -+.+..     .|+.+    .....
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~----~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE----VVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT----CEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh----cccccccccchHHHHHHHHHHhCCC
Confidence            34567899898865 566667766 7886 99999999999999876 221    122221     12211    12245


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+|+|+..-.     .   ...+....++|++||.+++...
T Consensus       252 g~Dvvid~~g-----~---~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          252 EPAVALECTG-----V---ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCEEEECCC-----C---hHHHHHHHHHhcCCCEEEEEcc
Confidence            7999995322     1   1346788899999999988654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.05  E-value=0.076  Score=45.43  Aligned_cols=93  Identities=19%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc------ccCC----CCCC
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA------DFFT----WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~------d~~~----~~~~  172 (274)
                      ..++.+||-+|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-.     +  ..+..      +..+    ... 
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~~i~~~~~-  240 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-----D--LVLQISKESPQEIARKVEGQLG-  240 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----S--EEEECSSCCHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-----C--EEEcCcccccchHHHHHHHHhC-
Confidence            34568999999875 666777766 788 89999999998888875421     1  12211      1111    112 


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..+|+|+..-.-        ...+....++|++||.++....
T Consensus       241 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          241 CKPEVTIECTGA--------EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------hHHHHHHHHHhcCCCEEEEEec
Confidence            469999853221        1345778899999999887643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.97  E-value=1.1  Score=41.84  Aligned_cols=151  Identities=12%  Similarity=0.123  Sum_probs=95.4

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC----------CCeEEEEeCChHHHHHHHHHhhcCC-----------
Q 024021           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP----------ERYVVGLEISDIAIKKAEELSSSLP-----------  154 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~----------~~~v~~vD~~~~~~~~a~~~~~~~~-----------  154 (274)
                      .+.+++... ..+...|+-+|||-=.....+...          +..++=+|+ |+.++.=++.+....           
T Consensus        95 ~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~  173 (695)
T 2zwa_A           95 RLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSED  173 (695)
T ss_dssp             HHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSS
T ss_pred             HHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccc
Confidence            345555543 223468999999987777777553          345666666 444444333332110           


Q ss_pred             --C----------CcceEEEEcccCCC-----------C-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          155 --N----------AKFVSFLKADFFTW-----------C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       155 --~----------~~~~~~~~~d~~~~-----------~-~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                        .          +.+..++.+|+.+.           . .....-++++-.++.|++++....+++.+.+.  +++.++
T Consensus       174 ~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~  251 (695)
T 2zwa_A          174 KDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFI  251 (695)
T ss_dssp             CSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEE
T ss_pred             cccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEE
Confidence              0          13788999999872           0 33445677888999999999999999999864  677766


Q ss_pred             EEEccCCC---C-----------CCCCC-----cccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          211 TLMFPISD---H-----------VGGPP-----YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       211 ~~~~~~~~---~-----------~~~~~-----~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +.+.-...   .           ..+.+     ...+.++..+.|.++||..+...+..
T Consensus       252 ~~e~~~~~~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~  310 (695)
T 2zwa_A          252 ILEQLIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMF  310 (695)
T ss_dssp             EEEECCTTCTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHH
T ss_pred             EEEeecCCCCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHH
Confidence            65532221   0           11111     12368899999999999977666543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.95  E-value=0.49  Score=34.83  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=57.9

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      .+|+=+|+  |..+..+++    .|..|+.+|.+ ++.++.......     ..+.++.+|..+.     ..-..+|+|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            56777775  666655544    78899999997 454544443322     2378889998762     1235688888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.-     +++.....+....+.+.|...++...
T Consensus        77 ~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           77 ALS-----DNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             ECS-----SCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             Eec-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            532     22334455566677777777777654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.95  E-value=0.031  Score=48.78  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=58.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D  176 (274)
                      .++.+||=+|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-..       .++..   |+.+    ......+|
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-------HVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------EEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence            4567899998754 455566665 788 999999999999998765311       11111   1111    12234699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..-.-.   .......++.+.++++++|.+++...
T Consensus       285 ~vid~~g~~---~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          285 LFLEATGVP---QLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             EEEECSSCH---HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             EEEECCCCc---HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            999432211   01222333333455599999888643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.92  E-value=0.04  Score=47.48  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCCCCCCeeEEEe
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~D~v~~  180 (274)
                      ..++.+||-+|+|. |..+.++++ .|++|++++.+++.++.+++.-.     +  .++..   |..... .+.+|+|+.
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~-~~g~Dvvid  263 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-----D--EVVNSRNADEMAAH-LKSFDFILN  263 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-----S--EEEETTCHHHHHTT-TTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEeccccHHHHHHh-hcCCCEEEE
Confidence            34568999999874 666667766 78899999999998888876421     1  11211   111111 157999995


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .-.-.        ..++...++|+++|.++...
T Consensus       264 ~~g~~--------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          264 TVAAP--------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CCSSC--------CCHHHHHTTEEEEEEEEECC
T ss_pred             CCCCH--------HHHHHHHHHhccCCEEEEec
Confidence            43221        12466788999999988754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.87  E-value=0.022  Score=44.34  Aligned_cols=90  Identities=20%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||..|+  |.|..+..++. .|++|+++|.+++..+.+++.    +. . . .+  |..+         ......
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~-~-~-~~--d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GV-E-Y-VG--DSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CC-S-E-EE--ETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC-C-E-Ee--eCCcHHHHHHHHHHhCCCC
Confidence            45689999995  44555555544 688999999998877766532    21 1 1 11  2221         112246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+++.+..    .     ..++...++|++||+++....
T Consensus       108 ~D~vi~~~g----~-----~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          108 VDVVLNSLA----G-----EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEEEECCC----T-----HHHHHHHHTEEEEEEEEECSC
T ss_pred             CeEEEECCc----h-----HHHHHHHHHhccCCEEEEEcC
Confidence            999996432    1     246788899999999887543

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=94.79  E-value=0.12  Score=42.34  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             eEEE-EcccCCCCCCCCeeEEEeccccccc--C-----h--hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024021          159 VSFL-KADFFTWCPTELFDLIFDYTFFCAI--E-----P--EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS  228 (274)
Q Consensus       159 ~~~~-~~d~~~~~~~~~~D~v~~~~~~~~~--~-----~--~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~  228 (274)
                      .++. .+|+..+...+++|+|++...-.+-  .     +  .....+++...++|+|||.+++-.+...+.        .
T Consensus       190 At~~~~lDfg~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr--------~  261 (320)
T 2hwk_A          190 ATFRARLDLGIPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADR--------A  261 (320)
T ss_dssp             CSEECCGGGCSCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSH--------H
T ss_pred             ceeecccccCCccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcc--------c
Confidence            4555 7888776555789999997543221  1     1  122346678889999999999998876432        3


Q ss_pred             HHHHHHHHhcCCCcEEEEeec
Q 024021          229 VSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       229 ~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      .+++...+++ -|+.+.+...
T Consensus       262 se~lv~~LaR-~F~~Vr~vKP  281 (320)
T 2hwk_A          262 SESIIGAIAR-QFKFSRVCKP  281 (320)
T ss_dssp             HHHHHHHHHT-TEEEEEEECC
T ss_pred             HHHHHHHHHH-hcceeeeeCC
Confidence            5777777777 4888777653

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.76  E-value=0.013  Score=50.44  Aligned_cols=93  Identities=16%  Similarity=0.044  Sum_probs=61.5

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCeeE
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D~  177 (274)
                      .++.+||-+|+|. |..+..+++ .|++|++++.+++.++.+++.-.       ...+..+..+       ......+|+
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~~~g~g~D~  260 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA-------DHGINRLEEDWVERVYALTGDRGADH  260 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC-------CEEEcCCcccHHHHHHHHhCCCCceE
Confidence            4568999999765 555666666 78899999999999988876531       1122211111       122347999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      |+.... .        ..+....++|+++|.+++....
T Consensus       261 vid~~g-~--------~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          261 ILEIAG-G--------AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             EEEETT-S--------SCHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCC-h--------HHHHHHHHHhhcCCEEEEEecC
Confidence            996433 1        1356778899999999887543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.68  E-value=0.1  Score=44.21  Aligned_cols=94  Identities=16%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCC--CCCCCeeEE
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTW--CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~--~~~~~~D~v  178 (274)
                      ..++.+||-.|+|. |..+..+++ .|++|+++|.+++..+.+++.-.     +  ..+..   |+.+.  ...+.+|+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~~~~~~~g~~d~v  236 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA-----E--VAVNARDTDPAAWLQKEIGGAHGV  236 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-----S--EEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC-----C--EEEeCCCcCHHHHHHHhCCCCCEE
Confidence            34568999999875 777777776 78899999999999998876421     1  11211   11110  011368998


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +....    .    ...++...++|+++|.+++...
T Consensus       237 id~~g----~----~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          237 LVTAV----S----PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EESSC----C----HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEeCC----C----HHHHHHHHHHhccCCEEEEeCC
Confidence            85322    1    2356788899999999887543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.65  E-value=0.25  Score=42.71  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=33.6

Q ss_pred             CeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhc
Q 024021          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      ..|+|+|+|.|.++..+++         ...+++.||+|+...+.-++++..
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            4799999999999876653         223899999999988877666543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.55  E-value=0.039  Score=47.56  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C---CCCCCee
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W---CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~D  176 (274)
                      ..++.+||-.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-...    -+.....|+.+   .   ...+.+|
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~----vi~~~~~~~~~~i~~~~~~~~gg~D  255 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA----TVDPSAGDVVEAIAGPVGLVPGGVD  255 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSE----EECTTSSCHHHHHHSTTSSSTTCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCE----EECCCCcCHHHHHHhhhhccCCCCC
Confidence            35668999999865 566666666 788 8999999999999888753110    01110112111   0   1223799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..-.-        ...++...++|++||.+++...
T Consensus       256 vvid~~G~--------~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          256 VVIECAGV--------AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             EEEECSCC--------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEECCCC--------HHHHHHHHHHhccCCEEEEEec
Confidence            99953211        1356788899999999888653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=94.42  E-value=0.21  Score=43.38  Aligned_cols=100  Identities=16%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc----cCC----CCCCCC
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----FFT----WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d----~~~----~~~~~~  174 (274)
                      ..++.+||-+|+|. |..+.++++ .|+ .|+++|.+++.++.+++.-        .+.+...    +.+    ......
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG--------a~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC--------CcEEccCCcchHHHHHHHHhCCCC
Confidence            34568999999865 667777776 787 7999999999999887542        1222211    111    112246


Q ss_pred             eeEEEeccccccc-------ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+|+..-.-...       ........++...++|++||.+++..
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            9999965332110       00001235678889999999987754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=94.38  E-value=0.061  Score=43.94  Aligned_cols=81  Identities=15%  Similarity=0.146  Sum_probs=55.2

Q ss_pred             eEEEEcccCC---CCCCCCeeEEEeccccccc--------Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC
Q 024021          159 VSFLKADFFT---WCPTELFDLIFDYTFFCAI--------EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP  223 (274)
Q Consensus       159 ~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~--------~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~  223 (274)
                      .+++.+|..+   ..+.++||+|++...+..-        ..    .....++..+.++|+|||.+++....        
T Consensus         5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d--------   76 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP--------   76 (260)
T ss_dssp             SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH--------
T ss_pred             CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc--------
Confidence            4567888765   3456789999998887532        11    13467788889999999998886411        


Q ss_pred             CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          224 PYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       224 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                         .....+..++.+.||.......+.
T Consensus        77 ---~~~~~~~~~~~~~gf~~~~~iiW~  100 (260)
T 1g60_A           77 ---FNCAFICQYLVSKGMIFQNWITWD  100 (260)
T ss_dssp             ---HHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ---HHHHHHHHHHHhhccceeEEEEEE
Confidence               123456667888899877754443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.16  E-value=0.24  Score=43.35  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+|+=+|+|  .++..++    +.|..|+++|.+++.++.++..        .+.++.+|..+.     ..-..+|+|+
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~--------g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT--------TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC--------CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            3578888875  4554444    3789999999999999888643        256788998872     2235688887


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.     ++++.....+-...+.+.|+..+++-.
T Consensus        74 v~-----~~~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           74 NA-----IDDPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EC-----CSSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EC-----CCChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            53     233444455566777788888877765

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=94.10  E-value=0.15  Score=43.43  Aligned_cols=94  Identities=17%  Similarity=0.096  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCC----CCC---C
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT----WCP---T  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~----~~~---~  172 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|+++|.+++..+.+++.-    . +  ..+..    |..+    ...   .
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG----a-~--~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG----A-D--VTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----C-S--EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----C-C--EEEcCcccccHHHHHHHHhccccC
Confidence            34668999999864 566666666 7889999999999988887532    1 1  11211    1111    011   2


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..+|+|+.....        ...++...++|+++|.++....
T Consensus       239 ~g~D~vid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          239 DLPNVTIDCSGN--------EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCSEEEECSCC--------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            469999853321        1245778899999999887643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.03  E-value=0.035  Score=47.34  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCeeE
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D~  177 (274)
                      ++.+||-+|+|. |..+..+++ .|+ +|++++.+++..+.+++.-.     +  ..+..   |+.+    ......+|+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga-----~--~~~~~~~~~~~~~v~~~~~g~g~D~  239 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA-----D--YVINPFEEDVVKEVMDITDGNGVDV  239 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC-----S--EEECTTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-----C--EEECCCCcCHHHHHHHHcCCCCCCE
Confidence            678999999853 555566665 788 99999999998888875421     1  11111   1111    112246999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+..-..        ...++...++|+++|.++....
T Consensus       240 vid~~g~--------~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          240 FLEFSGA--------PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEEcc
Confidence            9954321        1346778899999999887543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.88  E-value=0.44  Score=37.45  Aligned_cols=89  Identities=8%  Similarity=-0.031  Sum_probs=57.4

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..|+.+|.+++.++...+..       .+.++.+|..+.     ..-..+|+|++.
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            4666665  666655544    7889999999999887655432       367889998762     123468988853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                           .+++.....+..+.+.+.+...++...
T Consensus        73 -----~~~d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           73 -----TPRDEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             -----CSCHHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             -----cCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence                 233344455566666666666666543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.87  E-value=0.075  Score=44.58  Aligned_cols=87  Identities=17%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      .++.+||=.|+|. |..+.++++ .|++|++++ +++..+.+++.-.       ..++ .| .+.. ...+|+|+..-.-
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa-------~~v~-~d-~~~v-~~g~Dvv~d~~g~  209 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV-------RHLY-RE-PSQV-TQKYFAIFDAVNS  209 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE-------EEEE-SS-GGGC-CSCEEEEECC---
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC-------CEEE-cC-HHHh-CCCccEEEECCCc
Confidence            4568999999853 666667766 788999999 9988888877431       1122 24 2222 5679999943211


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                           +    .+....++|+++|.++...
T Consensus       210 -----~----~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          210 -----Q----NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------TTGGGEEEEEEEEEEC
T ss_pred             -----h----hHHHHHHHhcCCCEEEEEe
Confidence                 1    1256789999999988863

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=93.83  E-value=0.018  Score=49.01  Aligned_cols=92  Identities=13%  Similarity=0.159  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee
Q 024021          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D  176 (274)
                      .++.+||-.|+|  .|..+..+++ .|++|++++.+++.++.+++.-.     +  ..+..   |+.+    ......+|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga-----~--~~~~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA-----A--YVIDTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC-----c--EEEeCCcccHHHHHHHHhCCCCCc
Confidence            456899999987  5666666666 78899999999988888877421     1  11211   1111    12234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-     ..    .....++|+++|.++....
T Consensus       216 vvid~~g~-----~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          216 AAIDSIGG-----PD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEESSCH-----HH----HHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCC-----hh----HHHHHHHhcCCCEEEEEee
Confidence            99853321     11    2334489999999888654

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=93.61  E-value=0.41  Score=46.54  Aligned_cols=126  Identities=12%  Similarity=-0.004  Sum_probs=77.3

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc------------CC-----CC
Q 024021          110 GRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF------------FT-----WC  170 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~------------~~-----~~  170 (274)
                      .+++|+-||.|.+..-+...|.  .+.++|+++.+++..+.+.+      ...++.+|+            .+     ..
T Consensus       541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~~~lp  614 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRGQRLP  614 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred             CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhhhhcc
Confidence            5899999999999999988887  57899999999988888764      234454443            21     11


Q ss_pred             CCCCeeEEEecccccccCh----------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021          171 PTELFDLIFDYTFFCAIEP----------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~----------~----~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (274)
                      ..+.+|+|+....-..++.          +    .+..+ -++.+.++|.  +++.+....-..  .........+.+.|
T Consensus       615 ~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~-~riv~~~rPk--~~llENV~glls--~~~~~~~~~i~~~L  689 (1002)
T 3swr_A          615 QKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSF-LSYCDYYRPR--FFLLENVRNFVS--FKRSMVLKLTLRCL  689 (1002)
T ss_dssp             CTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHH-HHHHHHHCCS--EEEEEEEGGGGT--TGGGHHHHHHHHHH
T ss_pred             cCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHH-HHHHHHhCCC--EEEEeccHHHhc--cCcchHHHHHHHHH
Confidence            2347999998765443321          0    11222 3344556765  444443221100  00011356788888


Q ss_pred             hcCCCcEEEE
Q 024021          237 QPMGFQAISI  246 (274)
Q Consensus       237 ~~~Gf~~~~~  246 (274)
                      +..||.+.-.
T Consensus       690 ~~lGY~v~~~  699 (1002)
T 3swr_A          690 VRMGYQCTFG  699 (1002)
T ss_dssp             HHHTCEEEEE
T ss_pred             HhcCCeEEEE
Confidence            8999987543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.60  E-value=0.28  Score=41.39  Aligned_cols=94  Identities=12%  Similarity=0.000  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCee
Q 024021          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~---~~~~~~~D  176 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+.+.+   +.   ...+..   |+.+   ....+.+|
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~~~~~~~~~~d  220 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---GF---DGAIDYKNEDLAAGLKRECPKGID  220 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---CC---SEEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC---CEEEECCCHHHHHHHHHhcCCCce
Confidence            345689999998  45666666665 7889999999998888774332   11   111111   1111   01134699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+.+..     .    ..+....++|+++|.+++...
T Consensus       221 ~vi~~~g-----~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          221 VFFDNVG-----G----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEESSC-----H----HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCC-----c----chHHHHHHHHhhCCEEEEEee
Confidence            9985332     1    256788899999999887643

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.59  E-value=0.023  Score=48.04  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-.       ...+..+-.+       ......+|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA-------WETIDYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------CEEEeCCCccHHHHHHHHhCCCCce
Confidence            45679999883  45666666665 78899999999999988876421       1112211111       12234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-         ..+....++|+++|.+++...
T Consensus       212 vvid~~g~---------~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          212 VVYDGVGQ---------DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEESSCG---------GGHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCCh---------HHHHHHHHHhcCCCEEEEEec
Confidence            99964331         135678899999999988654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.56  E-value=0.25  Score=41.67  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             ceEEE-EcccCC---CCCCCCeeEEEeccccccc------C---hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024021          158 FVSFL-KADFFT---WCPTELFDLIFDYTFFCAI------E---PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       158 ~~~~~-~~d~~~---~~~~~~~D~v~~~~~~~~~------~---~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~  224 (274)
                      ...++ .+|..+   ..+.++||+|++...+..-      .   .......+..+.++|+|||.+++..-....   +..
T Consensus        38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~---~~~  114 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQ---GEA  114 (319)
T ss_dssp             EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCC---CCT
T ss_pred             cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcccc---ccc
Confidence            46677 899876   4556789999999887532      1   124567788889999999999886532211   001


Q ss_pred             cccCHHHHHHHHhcCC-CcEEEEeec
Q 024021          225 YKVSVSDYEEVLQPMG-FQAISIVDN  249 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~G-f~~~~~~~~  249 (274)
                      .......+...+...| |.......+
T Consensus       115 ~~~~l~~l~~~i~~~G~~~~~~~IIW  140 (319)
T 1eg2_A          115 GSGDLISIISHMRQNSKMLLANLIIW  140 (319)
T ss_dssp             TBCCHHHHHHHHHHHCCCEEEEEEEE
T ss_pred             ccccHHHHHHHHhCcccceeEEEEEE
Confidence            1123456667777777 887765443

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.53  E-value=0.093  Score=44.61  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE----cccCC-CCCCCCeeEE
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK----ADFFT-WCPTELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~----~d~~~-~~~~~~~D~v  178 (274)
                      ++.+||-+|+|. |..+.++++ .  |++|++++.+++..+.+++.-.     +  .++.    .|... ......+|+|
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~g~g~D~v  242 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA-----D--YVSEMKDAESLINKLTDGLGASIA  242 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC-----S--EEECHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC-----C--EEeccccchHHHHHhhcCCCccEE
Confidence            678999999864 556666666 5  8999999999999988876421     1  1111    11111 1113379999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +..-.-        ...++...++|+++|.++....
T Consensus       243 id~~g~--------~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          243 IDLVGT--------EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EESSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCCC--------hHHHHHHHHHhhcCCEEEEeCC
Confidence            954321        1346788899999999887543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.48  E-value=0.3  Score=41.11  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|+++|.+++.++.+++.    +.  .. .+  |..+         ....+.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~----g~--~~-~~--d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF--DA-AF--NYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC--SE-EE--ETTSCSCHHHHHHHHCTTC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC--cE-EE--ecCCHHHHHHHHHHHhCCC
Confidence            45689999997  55555555554 788999999999888887433    11  11 11  2221         001246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+++.+..-         ..+....++|++||.+++..
T Consensus       215 ~d~vi~~~g~---------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          215 YDCYFDNVGG---------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEEESSCH---------HHHHHHHTTEEEEEEEEECC
T ss_pred             CeEEEECCCh---------HHHHHHHHHHhcCCEEEEEe
Confidence            9999854331         23577889999999988754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.39  E-value=0.028  Score=47.71  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-.       ...+..+-.+       ......+|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-------~~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA-------EYLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------cEEEeCCCchHHHHHHHHhCCCCce
Confidence            45689999984  45566666665 78899999999998888866421       1122211111       12234699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-         ..++...++|+++|.++....
T Consensus       220 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          220 ASFDSVGK---------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEECCGG---------GGHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCh---------HHHHHHHHHhccCCEEEEEcC
Confidence            99964331         235678889999999888643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.16  E-value=1.3  Score=35.62  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCC--cch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCG--TGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++  .|.   .+..|++.|++|+.++.++...+.+.+.....+ ..++.++.+|+.+...          
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            456788888876  332   345666689999999988765555555544433 1368999999987321          


Q ss_pred             -CCCeeEEEecccccc----------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 -TELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -~~~~D~v~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .+.+|+++.+..+..          .+.+...           .+++.+...++++|.++.+..
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence             136899887754322          2223222           345667777888888777653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.03  E-value=1.2  Score=36.25  Aligned_cols=105  Identities=13%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+            .+.++.+.......+  .++.++.+|+.+...
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            446788888876653   234555689999999987            666666555554443  568999999987211


Q ss_pred             -----------CCCeeEEEecccccc----cChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021          172 -----------TELFDLIFDYTFFCA----IEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -----------~~~~D~v~~~~~~~~----~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                                 .++.|+++.+..+..    .+.+.+           ..+++.+...++.+|.++...
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence                       136899998755432    222322           234456667777788877654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.02  E-value=0.65  Score=39.25  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-    . .  ..+  |..+         ......
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g----a-~--~~~--d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALG----A-D--ETV--NYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----C-S--EEE--ETTSTTHHHHHHHHTTTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC----C-C--EEE--cCCcccHHHHHHHHhCCCC
Confidence            45689999998  56777766665 7889999999999888886532    1 1  112  2221         112247


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+|+.... .        ..++.+.++|+++|.++....
T Consensus       236 ~d~vi~~~g-~--------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          236 ADKVVDHTG-A--------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EEEEEESSC-S--------SSHHHHHHHEEEEEEEEESSC
T ss_pred             ceEEEECCC-H--------HHHHHHHHhhccCCEEEEEec
Confidence            999996543 2        135677889999999887543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.00  E-value=2.2  Score=34.58  Aligned_cols=74  Identities=20%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+...           -
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            457888888887774   245556689999999999999888887776655  468899999976211           1


Q ss_pred             CCeeEEEecc
Q 024021          173 ELFDLIFDYT  182 (274)
Q Consensus       173 ~~~D~v~~~~  182 (274)
                      ++.|+++.+.
T Consensus        83 G~iDiLVNNA   92 (254)
T 4fn4_A           83 SRIDVLCNNA   92 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4677777664

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=92.93  E-value=0.27  Score=42.38  Aligned_cols=93  Identities=18%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc------ccCC----CCCCC
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA------DFFT----WCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~------d~~~----~~~~~  173 (274)
                      .++.+||-+|+|. |..+..+++ .| .+|++++.+++.++.+++.-    .   ..++..      |+.+    .....
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG----a---~~vi~~~~~~~~~~~~~v~~~~~g~  266 (380)
T 1vj0_A          194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG----A---DLTLNRRETSVEERRKAIMDITHGR  266 (380)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT----C---SEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcC----C---cEEEeccccCcchHHHHHHHHhCCC
Confidence            4567999999653 555566666 78 59999999999988887532    1   112221      1111    12233


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+|+|+..-..        ...+....++|+++|.++....
T Consensus       267 g~Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          267 GADFILEATGD--------SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence            69999954321        1245678899999999887643

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.93  E-value=0.23  Score=43.52  Aligned_cols=43  Identities=16%  Similarity=0.113  Sum_probs=33.8

Q ss_pred             CCeEEEEcCCcchhHHHhhC----C---CCeEEEEeCChHHHHHHHHHhh
Q 024021          109 KGRALVPGCGTGYDVVAMAS----P---ERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~---~~~v~~vD~~~~~~~~a~~~~~  151 (274)
                      +.+|+|+|+|+|.++..+++    .   ..+++.||+|+...+.-++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            46999999999998876654    1   2389999999988777776654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.91  E-value=0.29  Score=41.50  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCC----CCCCCCeeE
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~----~~~~~~~D~  177 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.-.       ..++..+  +.+    ......+|+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-------~~v~~~~~~~~~~v~~~~~~~g~Dv  230 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA-------DIVLPLEEGWAKAVREATGGAGVDM  230 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEESSTTHHHHHHHHTTTSCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-------cEEecCchhHHHHHHHHhCCCCceE
Confidence            45689999997  45666666666 78899999999988888877421       1122222  111    122346999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+....-         ..+....++|+++|.+++...
T Consensus       231 vid~~g~---------~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          231 VVDPIGG---------PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEESCC-----------CHHHHHHTEEEEEEEEEC--
T ss_pred             EEECCch---------hHHHHHHHhhcCCCEEEEEEc
Confidence            9964331         135678889999999887643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.90  E-value=0.17  Score=43.23  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCCCCCCCCeeEEE
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTWCPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~D~v~  179 (274)
                      ..++.+||-+|+|. |..+..+++ .|++|++++.+++.++.+++.-.       ..++..    |+.+... +.+|+|+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~v~~~~~~~~~~~~~~-~~~D~vi  248 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA-------DHYIATLEEGDWGEKYF-DTFDLIV  248 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-------SEEEEGGGTSCHHHHSC-SCEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------CEEEcCcCchHHHHHhh-cCCCEEE
Confidence            34568999999853 555666666 78899999999988888876421       112221    1111111 4799999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..-...  +.    ..++...++|++||.++....
T Consensus       249 d~~g~~--~~----~~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSL--TD----IDFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCS--TT----CCTTTGGGGEEEEEEEEECCC
T ss_pred             ECCCCC--cH----HHHHHHHHHhcCCCEEEEecC
Confidence            653320  00    123567789999999887543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.73  E-value=0.54  Score=39.75  Aligned_cols=93  Identities=15%  Similarity=0.075  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCC---CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~---~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.+   +. .  ..+..    ++.+   ....+.+|
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g~-~--~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---GF-D--DAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---CC-S--EEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC-c--eEEecCCHHHHHHHHHHHhCCCCc
Confidence            45689999997  56666666665 7889999999998888876433   11 1  11111    1111   00124699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-         ..+....++|++||.+++...
T Consensus       228 ~vi~~~g~---------~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          228 IYFENVGG---------KMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEESSCH---------HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEEECCCH---------HHHHHHHHHHhcCCEEEEEcc
Confidence            99854321         246788899999999887543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.59  E-value=0.93  Score=33.69  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~D~  177 (274)
                      .....-|||+|-|.|..--.+.+  ++.+|+++|-.-..-       +. -..+.-.++.+|+.+..+      ..+.-+
T Consensus        38 ~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~h-------p~-~~P~~e~~ilGdi~~tL~~~~~r~g~~a~L  109 (174)
T 3iht_A           38 AGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH-------PD-STPPEAQLILGDIRETLPATLERFGATASL  109 (174)
T ss_dssp             TTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC-------GG-GCCCGGGEEESCHHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccC-------CC-CCCchHheecccHHHHHHHHHHhcCCceEE
Confidence            33457899999999999988888  888999999731100       00 011234677787776322      222333


Q ss_pred             EEecccccccCh--hHHHHHHHHHHhcccCCcEEEE
Q 024021          178 IFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       178 v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +.+..-.++-..  .....+-..+..+|.|||+++.
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence            332222221111  1122333556788999998876

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=92.56  E-value=1.1  Score=42.53  Aligned_cols=42  Identities=10%  Similarity=-0.030  Sum_probs=35.3

Q ss_pred             CeEEEEcCCcchhHHHhhCCC------C-eEEEEeCChHHHHHHHHHhh
Q 024021          110 GRALVPGCGTGYDVVAMASPE------R-YVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~------~-~v~~vD~~~~~~~~a~~~~~  151 (274)
                      .+|+|+-||.|+++.-+...|      + .+.++|+++.+++--+.|.+
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            689999999999998776644      3 57899999999988888864

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.54  E-value=1.7  Score=35.73  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCCCeEEEEcCCcc-----hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021          107 LPKGRALVPGCGTG-----YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~G-----~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  170 (274)
                      ..++++|=.|++.|     ..+..|++.|++|+.++.++...+.+++.....   .++.++.+|+.+..           
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHH
Confidence            45678999987633     234556668999999999876555555444333   25888999998721           


Q ss_pred             CCCCeeEEEeccccc----------ccChhHH-----------HHHHHHHHhcccCCcEEEEEEc
Q 024021          171 PTELFDLIFDYTFFC----------AIEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~----------~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..++.|+++.+..+.          ..+.+.+           ..+++.+...++.+|.|+.+..
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS  170 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY  170 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence            114789999875433          1222322           2344566677777888777653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.52  E-value=0.58  Score=34.53  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             CCCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C--CCCCCeeE
Q 024021          107 LPKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W--CPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~--~~~~~~D~  177 (274)
                      .++.+|+=+|+|  ..+..+    ...|.+|+++|.+++.++.++.   .    ....++.+|..+   .  .....+|+
T Consensus        17 ~~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           17 QKSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             cCCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCE
Confidence            456799999875  444333    3478899999998875443321   1    124556666543   1  11246898


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+..-.     .+.....+..+.+.+.+...++...
T Consensus        88 Vi~~~~-----~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           88 VFAFTN-----DDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             EEECSS-----CHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEeC-----CcHHHHHHHHHHHHHCCCCeEEEEE
Confidence            885422     2222334444555555555655544

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=92.39  E-value=0.17  Score=42.96  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC----CCCCCCee
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT----WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~----~~~~~~~D  176 (274)
                      ..++.+||-+|+|. |..+.++++ . +.+|+++|.+++..+.+++.-.     +  .++..  |..+    ......+|
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa-----~--~~i~~~~~~~~~v~~~t~g~g~d  241 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA-----D--AAVKSGAGAADAIRELTGGQGAT  241 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC-----S--EEEECSTTHHHHHHHHHGGGCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-----C--EEEcCCCcHHHHHHHHhCCCCCe
Confidence            35568999999865 666677776 4 6799999999999998876421     1  11211  1111    11223799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..-.     .   ...++...++|+++|.+++...
T Consensus       242 ~v~d~~G-----~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          242 AVFDFVG-----A---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             EEEESSC-----C---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEECCC-----C---HHHHHHHHHHHhcCCEEEEECC
Confidence            9995322     1   2356788899999999987654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.29  E-value=0.063  Score=46.35  Aligned_cols=93  Identities=15%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~---~~~~~~~  175 (274)
                      .++.+||=+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-    .   ...+..     |+.+   ....+.+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lG----a---~~vi~~~~~~~~~~~~i~~~~~gg~  264 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFG----V---NEFVNPKDHDKPIQEVIVDLTDGGV  264 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTT----C---CEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC----C---cEEEccccCchhHHHHHHHhcCCCC
Confidence            4567999999863 666666666 687 8999999999888886532    1   112211     1111   0112379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      |+|+..-.     .   ...++...++|++| |++++...
T Consensus       265 D~vid~~g-----~---~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          265 DYSFECIG-----N---VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             SEEEECSC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCC-----C---HHHHHHHHHHhhccCCEEEEEcc
Confidence            99995322     1   23567888999997 99887654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.27  E-value=0.95  Score=36.46  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+...     .++.++.+|+.+...           .
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            456788888876653   234555589999999999887776665542     468999999987211           1


Q ss_pred             CCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024021          173 ELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~~D~v~~~~~~~~------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++.|+++.+.....      .+.+.+.           .+.+.+...++++|.++...
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            47899997754322      2333322           23455666677788777654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.21  E-value=0.15  Score=43.69  Aligned_cols=93  Identities=22%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCee
Q 024021          106 ALPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~---~~~~~~~D  176 (274)
                      ..++.+||-.|  .|.|..+..+++ .|++|++++.+++.++.+++.-    . +  ..+..   |+.+   ......+|
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~G----a-~--~~~~~~~~~~~~~~~~~~~~g~D  233 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLG----C-D--RPINYKTEPVGTVLKQEYPEGVD  233 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----C-S--EEEETTTSCHHHHHHHHCTTCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC----C-c--EEEecCChhHHHHHHHhcCCCCC
Confidence            34568999999  456777777766 7889999999998888887631    1 1  11211   1111   01124699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-         ..++.+.++|+++|.++....
T Consensus       234 ~vid~~g~---------~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          234 VVYESVGG---------AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEECSCT---------HHHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCH---------HHHHHHHHHHhcCCEEEEEeC
Confidence            99954321         246778899999999887653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.21  E-value=0.47  Score=40.41  Aligned_cols=87  Identities=25%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             CeEEEEcCCc-chhH-HHhh-C-CCCe-EEEEeCChH---HHHHHHHHhhcCCCCcceEEEEcccCCCCC------CCCe
Q 024021          110 GRALVPGCGT-GYDV-VAMA-S-PERY-VVGLEISDI---AIKKAEELSSSLPNAKFVSFLKADFFTWCP------TELF  175 (274)
Q Consensus       110 ~~vLDiG~G~-G~~~-~~l~-~-~~~~-v~~vD~~~~---~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~  175 (274)
                      .+||-+|+|. |..+ .+++ + .|++ |++++.+++   ..+.+++.-        .+.+  |..+...      .+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG--------a~~v--~~~~~~~~~i~~~~gg~  243 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD--------ATYV--DSRQTPVEDVPDVYEQM  243 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT--------CEEE--ETTTSCGGGHHHHSCCE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC--------Cccc--CCCccCHHHHHHhCCCC
Confidence            8999999743 6666 7777 6 6886 999999887   788876532        1222  2221100      1379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+|+..-.-        ...++...++|+++|.++....
T Consensus       244 Dvvid~~g~--------~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          244 DFIYEATGF--------PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             EEEEECSCC--------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCC--------hHHHHHHHHHHhcCCEEEEEeC
Confidence            999843221        1346788899999999887643

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.17  E-value=0.1  Score=44.97  Aligned_cols=93  Identities=12%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-----cCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-----~~~---~~~~~~~  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  ..+..+     +.+   ....+.+
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~~~~g~  263 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-----T--DFVNPNDHSEPISQVLSKMTNGGV  263 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----C--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----c--eEEeccccchhHHHHHHHHhCCCC
Confidence            4567999999764 556666666 788 89999999998888875321     1  112111     111   0011369


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      |+|+..-..        ...+....++|+++ |.+++...
T Consensus       264 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          264 DFSLECVGN--------VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCCC--------HHHHHHHHHHhhcCCcEEEEEcC
Confidence            999853221        13467888999999 99887543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.14  E-value=0.029  Score=47.81  Aligned_cols=89  Identities=13%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCeeE
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL  177 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~D~  177 (274)
                      ++.+||-+|+|. |..+..+++ .|+ +|++++.+++.++.+++. .     +  ..+..   |+.+    .. ...+|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-~~g~D~  234 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-GSGVEV  234 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-SSCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-CCCCCE
Confidence            678999999843 555666665 788 999999998877766543 1     1  11111   1111    11 346999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+..-.-        ...++...++|+++|.++...
T Consensus       235 vid~~g~--------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          235 LLEFSGN--------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             EEECSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence            9853221        134677889999999988754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=92.05  E-value=0.1  Score=44.92  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~---~~~~~~~  175 (274)
                      .++.+||-+|+|. |..+.++++ .|+ +|+++|.+++..+.+++.-.     +  ..+..     |+.+   ....+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~i~~~t~gg~  262 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-----T--ECLNPKDYDKPIYEVICEKTNGGV  262 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----c--EEEecccccchHHHHHHHHhCCCC
Confidence            4568999999764 556666666 677 89999999998888875321     1  11211     1111   0111379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.++....
T Consensus       263 Dvvid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          263 DYAVECAGR--------IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CEEEECCCC--------HHHHHHHHHHHhcCCCEEEEEcc
Confidence            999953221        23467888999999 99887543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=92.01  E-value=0.12  Score=44.53  Aligned_cols=93  Identities=14%  Similarity=0.153  Sum_probs=59.6

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~---~~~~~~~  175 (274)
                      .++.+||-+|+|. |..+.++++ .|+ +|+++|.+++..+.+++.-.     +  ..+..     |+.+   ....+.+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~v~~~~~~g~  261 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----T--ECINPQDFSKPIQEVLIEMTDGGV  261 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-----c--eEeccccccccHHHHHHHHhCCCC
Confidence            4567999999764 555666666 687 89999999999888876421     1  11211     1111   0111379


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      |+|+..-.-        ...+....++|+++ |.+++...
T Consensus       262 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          262 DYSFECIGN--------VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             SEEEECSCC--------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CEEEECCCc--------HHHHHHHHHhhccCCcEEEEEec
Confidence            999853221        13467888999999 99887543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=92.00  E-value=1.2  Score=44.68  Aligned_cols=128  Identities=13%  Similarity=0.009  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC------------C-----C
Q 024021          109 KGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF------------T-----W  169 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~------------~-----~  169 (274)
                      ..+++|+-||.|++..-+...|.  .+.++|+++.+++.-+.+.+.      ..++.+|+.            +     .
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p~------~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPG------TTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCTT------SEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC------CcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            46899999999999999988886  588999999999888887632      334444432            1     1


Q ss_pred             CCCCCeeEEEecccccccCh----------hHHHHH---HHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021          170 CPTELFDLIFDYTFFCAIEP----------EMRAAW---AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~----------~~~~~~---l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (274)
                      ...+.+|+|+....-..++.          +.+..+   +-++.+.++|.  +++.+....-...  ........+.+.|
T Consensus       925 p~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk--~fv~ENV~glls~--~~g~~~~~il~~L 1000 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPR--FFLLENVRNFVSY--RRSMVLKLTLRCL 1000 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCS--EEEEEEEGGGGTT--TTTHHHHHHHHHH
T ss_pred             cccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCc--EEEEeccHHHhcc--CccHHHHHHHHHH
Confidence            11246899998765444321          111111   22344556775  4444432221100  0011356788888


Q ss_pred             hcCCCcEEEE
Q 024021          237 QPMGFQAISI  246 (274)
Q Consensus       237 ~~~Gf~~~~~  246 (274)
                      +..||.+...
T Consensus      1001 ~~lGY~v~~~ 1010 (1330)
T 3av4_A         1001 VRMGYQCTFG 1010 (1330)
T ss_dssp             HHHTCEEEEE
T ss_pred             HhcCCeeeEE
Confidence            8999987543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.92  E-value=0.11  Score=44.71  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~---~~~~~~~  175 (274)
                      .++.+||-+|+|. |..+.++++ .|+ +|+++|.+++..+.+++.-.     +  ..+..     |+.+   ....+.+
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa-----~--~vi~~~~~~~~~~~~v~~~~~~g~  266 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----T--DCLNPRELDKPVQDVITELTAGGV  266 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--EEEccccccchHHHHHHHHhCCCc
Confidence            4567999999763 556666666 788 89999999998888865321     1  11111     1111   0011369


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      |+|+..-.-        ...++...++|+++ |.+++...
T Consensus       267 Dvvid~~G~--------~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          267 DYSLDCAGT--------AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SEEEESSCC--------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCCEEEEECC
Confidence            999843221        23467888999999 99887543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.90  E-value=2.3  Score=34.58  Aligned_cols=113  Identities=13%  Similarity=-0.008  Sum_probs=69.7

Q ss_pred             HHHhcCCCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----
Q 024021          100 HLHQSGALPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----  171 (274)
Q Consensus       100 ~~~~~~~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  171 (274)
                      .+.......++++|=.|++.|.   .+..|++.|++|+.++.. .+..+.....+...+  .++.++.+|+.+...    
T Consensus        22 ~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~   99 (271)
T 3v2g_A           22 SMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQA   99 (271)
T ss_dssp             HHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHH
T ss_pred             hhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHH
Confidence            3444445667889989887653   234555689999998664 344555444444433  468899999987211    


Q ss_pred             -------CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 -------TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -------~~~~D~v~~~~~~~~------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                             .++.|+++.+..+..      .+.+.+.           .+++.+...++++|.++.+.-
T Consensus       100 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          100 IRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                   136899998754322      2323322           345666677778888777653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.89  E-value=0.13  Score=44.17  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC---CCCCCCe
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT---WCPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~~---~~~~~~~  175 (274)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.-.     +  ..+..     |+.+   ....+.+
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~~~~g~  262 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----T--ECVNPQDYKKPIQEVLTEMSNGGV  262 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----S--EEECGGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----c--eEecccccchhHHHHHHHHhCCCC
Confidence            4567999999764 556666666 788 89999999998888865321     1  11211     1111   0111369


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~  213 (274)
                      |+|+..-.-        ...+....++|+++ |.+++..
T Consensus       263 D~vid~~g~--------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          263 DFSFEVIGR--------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             SEEEECSCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             cEEEECCCC--------HHHHHHHHHHhhcCCcEEEEec
Confidence            999843221        13467788999999 9988754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.84  E-value=0.07  Score=45.62  Aligned_cols=92  Identities=15%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-.     +  ..+..+-.+       ......+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA-----A--AGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC-----S--EEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC-----c--EEEecCChHHHHHHHHHhcCCCce
Confidence            45679999984  45555555555 78899999999998888855421     1  111111111       12234699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +++.+..-.         .+....++|+++|.+++...
T Consensus       234 ~vi~~~G~~---------~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          234 LILDCIGGS---------YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEESSCGG---------GHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCch---------HHHHHHHhccCCCEEEEEec
Confidence            998654321         24667889999999887653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.80  E-value=0.5  Score=40.05  Aligned_cols=95  Identities=16%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCC--cchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--c----CCCCCCCCe
Q 024021          106 ALPKGRALVPGCG--TGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--F----FTWCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G--~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~----~~~~~~~~~  175 (274)
                      ..++.+||-.|+|  .|..+..+++ . |++|+++|.+++..+.+++.-.     + ..+-..+  .    .+....+.+
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~-----~-~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-----D-YVINASMQDPLAEIRRITESKGV  241 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-----S-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-----C-EEecCCCccHHHHHHHHhcCCCc
Confidence            3456899999987  4455555555 5 8999999999998888865421     1 1111111  1    011111479


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+|+....-        ...++...++|+++|.++....
T Consensus       242 d~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          242 DAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             EEEEESCCC--------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             eEEEECCCC--------HHHHHHHHHHHhcCCEEEEECC
Confidence            999854321        1346778899999999887543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=91.66  E-value=0.16  Score=42.99  Aligned_cols=91  Identities=18%  Similarity=0.101  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCee
Q 024021          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~D  176 (274)
                      ..++.+||-+|+| .|..+..+++ .|++|++++.+++.++.+++.-    . +  ..  .|..+...       .+.+|
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lG----a-~--~~--~d~~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG----A-D--LV--VNPLKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----C-S--EE--ECTTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCC----C-C--EE--ecCCCccHHHHHHHHhCCCC
Confidence            4566899999985 3555566655 7889999999999888886531    1 1  11  12221000       04699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+.....        ...++...++|+++|.++...
T Consensus       233 ~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          233 AAVVTAVS--------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             EEEESSCC--------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCC--------HHHHHHHHHHhhcCCEEEEec
Confidence            99854321        134677889999999988754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.62  E-value=1.2  Score=35.99  Aligned_cols=106  Identities=17%  Similarity=0.087  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcCC-cchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---------
Q 024021          106 ALPKGRALVPGCG-TGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---------  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------  171 (274)
                      ..++++||=.|++ +|..+    ..|++.|++|+.++.+....+.+++.....   .++.++.+|+.+...         
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHHH
Confidence            3456889999875 24444    344558999999998865555555444433   247889999987211         


Q ss_pred             --CCCeeEEEecccccc-----------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 --TELFDLIFDYTFFCA-----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 --~~~~D~v~~~~~~~~-----------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                        .++.|+++.+..+..           .+.+.+.           .+++.+...++++|.++.+..
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence              147899998754322           3333322           344556666777787776553

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=91.54  E-value=0.062  Score=45.97  Aligned_cols=91  Identities=19%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-.       ...+..+-.+       .. ...+|
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~~~~~-~~g~D  237 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA-------KRGINYRSEDFAAVIKAET-GQGVD  237 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHH-SSCEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-------CEEEeCCchHHHHHHHHHh-CCCce
Confidence            45679998853  45666666665 78999999999999988876421       1112111111       11 34699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+....-     +    .+....++|+++|.+++...
T Consensus       238 vvid~~g~-----~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          238 IILDMIGA-----A----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEESCCG-----G----GHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCCH-----H----HHHHHHHHhccCCEEEEEEe
Confidence            99964332     1    35677889999999887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=91.53  E-value=0.72  Score=39.06  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------CCCC
Q 024021          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----------WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----------~~~~  172 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.    +. +  ..+  |..+          ....
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g~-~--~~~--d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----GG-E--VFI--DFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----TC-C--EEE--ETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----CC-c--eEE--ecCccHhHHHHHHHHhCC
Confidence            345689999998  45666666655 788999999998887777653    11 1  111  3321          0112


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .+|+|+.....        ...++.+.+.|+++|.++....
T Consensus       238 -~~D~vi~~~g~--------~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          238 -GAHGVINVSVS--------EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             -CEEEEEECSSC--------HHHHHHHTTSEEEEEEEEECCC
T ss_pred             -CCCEEEECCCc--------HHHHHHHHHHHhcCCEEEEEeC
Confidence             69999865331        1356788999999999887543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.50  E-value=2.4  Score=34.75  Aligned_cols=105  Identities=12%  Similarity=0.073  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.++. ..+...+.....+  .++.++.+|+.+...           
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456788888876652   23455558999999998765 3444444444433  468999999987211           


Q ss_pred             CCCeeEEEeccccc-------ccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021          172 TELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 ~~~~D~v~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+..|+++.+....       ..+.+.+           ..+++.+...++.+|.++.+.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            13689999774322       1233332           234566677778888877654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.48  E-value=0.79  Score=38.96  Aligned_cols=89  Identities=16%  Similarity=0.158  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-    . +  ..+  |..+         ......
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g----a-~--~~~--d~~~~~~~~~~~~~~~~~~  239 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNG----A-H--EVF--NHREVNYIDKIKKYVGEKG  239 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----C-S--EEE--ETTSTTHHHHHHHHHCTTC
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcC----C-C--EEE--eCCCchHHHHHHHHcCCCC
Confidence            45689999996  45566665555 7899999999998888775431    1 1  112  2211         112236


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+|+.+..-         ..+....++|+++|.+++..
T Consensus       240 ~D~vi~~~G~---------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          240 IDIIIEMLAN---------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EEEEEESCHH---------HHHHHHHHHEEEEEEEEECC
T ss_pred             cEEEEECCCh---------HHHHHHHHhccCCCEEEEEe
Confidence            9999854321         23567789999999988754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.45  E-value=0.22  Score=41.84  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc--CCCCCCCCeeEEEeccccc
Q 024021          111 RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF--FTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~D~v~~~~~~~  185 (274)
                      +||=.|+  |.|..+.++++ .|++|++++.+++..+.+++.-.     + ..+-..+.  ......+.+|+|+..    
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~-~vi~~~~~~~~~~~~~~~~d~v~d~----  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA-----N-RILSRDEFAESRPLEKQLWAGAIDT----  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTC-----S-EEEEGGGSSCCCSSCCCCEEEEEES----
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----C-EEEecCCHHHHHhhcCCCccEEEEC----
Confidence            5998886  56777777776 78899999999999998877421     1 11111111  111223579998843    


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       ...    ..++...++|+++|.++....
T Consensus       219 -~g~----~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          219 -VGD----KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             -SCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             -CCc----HHHHHHHHHHhcCCEEEEEec
Confidence             221    257888999999999887643

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=91.32  E-value=0.094  Score=43.68  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCCCCCCCCeeEE
Q 024021          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFTWCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~D~v  178 (274)
                      ..++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.    +. +  ..+..    |+.+..  +.+|+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga-~--~~~~~~~~~~~~~~~--~~~d~v  193 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA-E--EAATYAEVPERAKAW--GGLDLV  193 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC-S--EEEEGGGHHHHHHHT--TSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC-C--EEEECCcchhHHHHh--cCceEE
Confidence            345689999997  45666666665 788999999999888887653    11 1  11211    111111  569999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +. ..-         ..++...++|+++|.++...
T Consensus       194 id-~g~---------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          194 LE-VRG---------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EE-CSC---------TTHHHHHTTEEEEEEEEEC-
T ss_pred             EE-CCH---------HHHHHHHHhhccCCEEEEEe
Confidence            96 221         13567889999999988754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.23  E-value=0.069  Score=45.02  Aligned_cols=90  Identities=12%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++..+.+++.-    . + . .+  |..+         ......
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g----~-~-~-~~--~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG----A-W-Q-VI--NYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT----C-S-E-EE--ETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----C-C-E-EE--ECCCccHHHHHHHHhCCCC
Confidence            45689999984  55555555554 7889999999998888887632    1 1 1 12  2211         112346


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+++.+.. .        ..++...++|+++|.++....
T Consensus       210 ~D~vi~~~g-~--------~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG-R--------DTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC-G--------GGHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc-h--------HHHHHHHHHhcCCCEEEEEec
Confidence            999996543 1        235778899999999887653

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=91.06  E-value=0.53  Score=41.01  Aligned_cols=43  Identities=19%  Similarity=0.063  Sum_probs=36.5

Q ss_pred             CeEEEEcCCcchhHHHhhCCCC---e----EEEEeCChHHHHHHHHHhhc
Q 024021          110 GRALVPGCGTGYDVVAMASPER---Y----VVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~---~----v~~vD~~~~~~~~a~~~~~~  152 (274)
                      .+|+|+-||.|.....+.+.|.   .    |.++|+++.++..-+.+...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            5899999999999998877662   3    78899999999888888754

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.01  E-value=1.1  Score=36.42  Aligned_cols=61  Identities=16%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .+.++++|=-|++.|.-   +..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~   69 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTD   69 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCC
Confidence            45678888888777632   35556699999999999998888777766554  468888888875

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=90.90  E-value=0.1  Score=44.11  Aligned_cols=90  Identities=21%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCC
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTEL  174 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~  174 (274)
                      .++.+||-.|+  |.|..+..+++ .|++|++++.+++.++.+++.-    . + . .+  |..+         ......
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g----~-~-~-~~--d~~~~~~~~~i~~~~~~~~  214 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLG----C-H-H-TI--NYSTQDFAEVVREITGGKG  214 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT----C-S-E-EE--ETTTSCHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----C-C-E-EE--ECCCHHHHHHHHHHhCCCC
Confidence            45679999995  56666666655 7889999999998888886532    1 1 1 11  2221         111246


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+++.+..-         ..++...++|+++|.++....
T Consensus       215 ~d~vi~~~g~---------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          215 VDVVYDSIGK---------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             EEEEEECSCT---------TTHHHHHHTEEEEEEEEECCC
T ss_pred             CeEEEECCcH---------HHHHHHHHhhccCCEEEEEec
Confidence            9999965331         235678899999999887643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=90.85  E-value=0.77  Score=39.21  Aligned_cols=90  Identities=17%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             CCCeEEEEc-C-CcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC---CCCCCCeeEE
Q 024021          108 PKGRALVPG-C-GTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLI  178 (274)
Q Consensus       108 ~~~~vLDiG-~-G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~---~~~~~~~D~v  178 (274)
                      ++.+||=.| + |.|..+..+++  .+.+|++++.+++..+.+++.-.     +  .++..  |+.+   ....+.+|+|
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa-----d--~vi~~~~~~~~~v~~~~~~g~Dvv  243 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA-----H--HVIDHSKPLAAEVAALGLGAPAFV  243 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC-----S--EEECTTSCHHHHHHTTCSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC-----C--EEEeCCCCHHHHHHHhcCCCceEE
Confidence            456899888 3 44777778876  47899999999998888876321     1  11111  1111   1233579999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      +..-.     .   ...++...++|+++|.+++.
T Consensus       244 id~~g-----~---~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          244 FSTTH-----T---DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EECSC-----H---HHHHHHHHHHSCTTCEEEEC
T ss_pred             EECCC-----c---hhhHHHHHHHhcCCCEEEEE
Confidence            84221     1   23567888999999999876

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.72  E-value=1.3  Score=37.04  Aligned_cols=88  Identities=17%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CeEEEEcCCc-c-hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       110 ~~vLDiG~G~-G-~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      .+|.=||+|. | .++..+++.|.  +|+++|.+++.++.+++.    +.   +.-...|..+ .  ....|+|+..   
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~---~~~~~~~~~~~~--~~~aDvVila---  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKVE--DFSPDFVMLS---  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCTTGGG--GGCCSEEEEC---
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CC---cchhcCCHHHHh--hccCCEEEEe---
Confidence            6898998764 1 22344455787  999999999888777643    21   1112233322 1  2357988854   


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                        +++.....+++.+...+++|.+++-
T Consensus       102 --vp~~~~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          102 --SPVRTFREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             --SCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             --CCHHHHHHHHHHHhhccCCCcEEEE
Confidence              3334456778888888988876543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.51  E-value=1.6  Score=34.51  Aligned_cols=89  Identities=10%  Similarity=-0.040  Sum_probs=57.5

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+|+=+|+|  ..+..++    +.|. |+++|.+++.++.++     .    .+.++.+|..+.     ..-..+|.|+
T Consensus         9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (234)
T 2aef_A            9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKANVRGARAVI   76 (234)
T ss_dssp             -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHTTCTTCSEEE
T ss_pred             CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhcCcchhcEEE
Confidence            3678888874  5554443    3677 999999998776654     1    277889998762     2235688888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +..     +++.....+....+.+.|+..++....
T Consensus        77 ~~~-----~~d~~n~~~~~~a~~~~~~~~iia~~~  106 (234)
T 2aef_A           77 VDL-----ESDSETIHCILGIRKIDESVRIIAEAE  106 (234)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred             EcC-----CCcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            532     223334445566667788777776553

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.51  E-value=1.8  Score=30.85  Aligned_cols=106  Identities=10%  Similarity=-0.010  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+|+=+|+  |..+..++    +.|.+|+++|.+++.++.++.    .    ...++.+|..+.     .....+|+|+
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            457888987  55555444    368899999998875543321    1    135566776541     1124689988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ....-.    ......+....+.+.+. .++...              +.....+.++..|...
T Consensus        76 ~~~~~~----~~~~~~~~~~~~~~~~~-~ii~~~--------------~~~~~~~~l~~~g~~~  120 (144)
T 2hmt_A           76 VAIGAN----IQASTLTTLLLKELDIP-NIWVKA--------------QNYYHHKVLEKIGADR  120 (144)
T ss_dssp             ECCCSC----HHHHHHHHHHHHHTTCS-EEEEEC--------------CSHHHHHHHHHHTCSE
T ss_pred             ECCCCc----hHHHHHHHHHHHHcCCC-eEEEEe--------------CCHHHHHHHHHcCCCE
Confidence            543311    11122334444556665 555443              2223345666667653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.50  E-value=3  Score=33.71  Aligned_cols=106  Identities=19%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.. .+..+...+.....+  .++.++.+|+.+...           
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456788888876553   234555689999998764 455555555444433  468999999987211           


Q ss_pred             CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .++.|+++.+.....      .+.+.+.           .+.+.+...++++|.++.+.-
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            136899997754322      2333322           344666777888888777654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.36  E-value=1.9  Score=36.29  Aligned_cols=89  Identities=10%  Similarity=-0.034  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      ..+++=+|+  |..+..+++    .|. ++.+|.+++.++ ++.        ..+.++.+|..+.     ..-+.+|.++
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            357888876  666666654    577 999999998887 543        1378899998872     2235789888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +..     +++..........+.+.|...++....
T Consensus       183 ~~~-----~~d~~n~~~~~~ar~~~~~~~iiar~~  212 (336)
T 1lnq_A          183 VDL-----ESDSETIHCILGIRKIDESVRIIAEAE  212 (336)
T ss_dssp             ECC-----SSHHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred             EcC-----CccHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            532     233334455566677888877776553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.29  E-value=5.1  Score=31.97  Aligned_cols=60  Identities=10%  Similarity=-0.111  Sum_probs=43.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.....+...+  .++.++.+|+.+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   67 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARN   67 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCC
Confidence            345788888877653   234555689999999999887777766665543  468888888865

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=90.23  E-value=2.8  Score=32.87  Aligned_cols=131  Identities=11%  Similarity=-0.035  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCCC--CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~--~~~~~D~v~  179 (274)
                      ..+++||=.|+ +|..+..++    +.|.+|++++.++........        .++ .++.+|+.+..  .-+.+|+|+
T Consensus        19 l~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           19 FQGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             --CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             cCCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEE
Confidence            34678888875 455554444    489999999998876544332        137 88999986311  113689999


Q ss_pred             ecccccccCh-hH--------HHHHHHHHHhcccCCcEEEE-EEccCCCCC----CCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          180 DYTFFCAIEP-EM--------RAAWAQKIKDFLKPDGELIT-LMFPISDHV----GGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       180 ~~~~~~~~~~-~~--------~~~~l~~~~~~L~pgG~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      .+........ ..        ...+++.+.+. . .+.++. ..+......    ....|..++...+++++..|+...-
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~gi~~~~  167 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKR-G-IKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKRSSLDYTI  167 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHH-T-CCEEEEECCTTCSCGGGSCGGGHHHHHHHHHHHHHHHHSSSEEEE
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHc-C-CCEEEEEecCCCCCCCCChhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence            7755432111 10        12233333221 2 245544 333322211    1112334566777788888888766


Q ss_pred             Eee
Q 024021          246 IVD  248 (274)
Q Consensus       246 ~~~  248 (274)
                      +..
T Consensus       168 lrp  170 (236)
T 3e8x_A          168 VRP  170 (236)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            655

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=90.23  E-value=0.9  Score=38.83  Aligned_cols=91  Identities=22%  Similarity=0.113  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~  181 (274)
                      ++.+||-+|+|. |..+..+++ .|++|++++.+++..+.+++.+..    +  .++  |..+    ....+.+|+|+..
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa----~--~v~--~~~~~~~~~~~~~~~D~vid~  258 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA----D--SFL--VSRDQEQMQAAAGTLDGIIDT  258 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC----S--EEE--ETTCHHHHHHTTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC----c--eEE--eccCHHHHHHhhCCCCEEEEC
Confidence            678999998743 444455555 788999999999887777643311    1  111  1111    0011469999965


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -....        .++...++|+++|.++....
T Consensus       259 ~g~~~--------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          259 VSAVH--------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             CSSCC--------CSHHHHHHEEEEEEEEECCC
T ss_pred             CCcHH--------HHHHHHHHHhcCCEEEEEcc
Confidence            33221        13456778899999887543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.19  E-value=1.9  Score=34.42  Aligned_cols=76  Identities=16%  Similarity=0.063  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++..+...+.....+  .++.++.+|+.+...           .
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            446788888876552   234555589999999999988877776665543  568899999987211           1


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      +..|+++.+..+
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999987644

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=90.12  E-value=0.58  Score=39.57  Aligned_cols=97  Identities=11%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCcchh-HHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYD-VVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~-~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v  178 (274)
                      ..++.+||=+|+|.+.. +..+++  .+.+|+++|.+++.++.+++.....    -+..-..|..+    ......+|.+
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~----~i~~~~~~~~~~v~~~t~g~g~d~~  236 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADV----TINSGDVNPVDEIKKITGGLGVQSA  236 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSE----EEEC-CCCHHHHHHHHTTSSCEEEE
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeE----EEeCCCCCHHHHhhhhcCCCCceEE
Confidence            45678999999987543 334443  4779999999999888887654211    12222222221    2223457777


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +....    .    ...+....++|+++|.+++...
T Consensus       237 ~~~~~----~----~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          237 IVCAV----A----RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             EECCS----C----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEecc----C----cchhheeheeecCCceEEEEec
Confidence            64322    1    2356788899999999887543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.00  E-value=1.5  Score=37.19  Aligned_cols=92  Identities=11%  Similarity=0.008  Sum_probs=59.0

Q ss_pred             CCCC--CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--------CC
Q 024021          106 ALPK--GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CP  171 (274)
Q Consensus       106 ~~~~--~~vLDiG~--G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~  171 (274)
                      ..++  .+||-.|+  |.|..+..+++ .|+ +|++++.+++..+.+++.+   +. +  ..+  |..+.        ..
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g~-~--~~~--d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---GF-D--AAI--NYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---CC-S--EEE--ETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---CC-c--eEE--ecCchHHHHHHHHhc
Confidence            3456  89999997  44555555554 788 9999999988887776533   11 1  111  22210        01


Q ss_pred             CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+.+|+++.+..         ...+....++|+++|.+++...
T Consensus       228 ~~~~d~vi~~~G---------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 PAGVDVYFDNVG---------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             TTCEEEEEESCC---------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC---------HHHHHHHHHHhccCcEEEEECC
Confidence            126999985433         1346788899999999887543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=89.93  E-value=0.15  Score=43.39  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             CCCeEEEEc-C-CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC---CCCCCCeeEEE
Q 024021          108 PKGRALVPG-C-GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLIF  179 (274)
Q Consensus       108 ~~~~vLDiG-~-G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~---~~~~~~~D~v~  179 (274)
                      ++.+||=.| + |.|..+..+++ .|++|++++.+++.++.+++.-.     +  ..+..  |+.+   ......+|+|+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~vi~~~~~~~~~~~~~~~~g~Dvv~  222 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA-----D--IVLNHKESLLNQFKTQGIELVDYVF  222 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC-----S--EEECTTSCHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----c--EEEECCccHHHHHHHhCCCCccEEE
Confidence            568899884 3 34556666665 78899999999999998887431     1  11111  1111   11234699999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ....     .   ...++...++|+++|.++..
T Consensus       223 d~~g-----~---~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          223 CTFN-----T---DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ESSC-----H---HHHHHHHHHHEEEEEEEEES
T ss_pred             ECCC-----c---hHHHHHHHHHhccCCEEEEE
Confidence            5321     1   23567888999999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.89  E-value=2.5  Score=34.79  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCCc--ch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCGT--GY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.  |.   .+..|++.|++|+.++.++...+...+.....   .++.++.+|+.+...          
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            4467888888753  32   34556668999999999876555554443333   246789999987211          


Q ss_pred             -CCCeeEEEeccccc----------ccChhHH-----------HHHHHHHHhcccCCcEEEEEEc
Q 024021          172 -TELFDLIFDYTFFC----------AIEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -~~~~D~v~~~~~~~----------~~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .++.|+++.+..+.          ..+.+.+           ..+++.+...++.+|.++.+..
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence             14689999875442          1222332           2344566667777888777653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=89.78  E-value=7.2  Score=31.82  Aligned_cols=57  Identities=14%  Similarity=0.005  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++.+|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+...     .++.++.+|+.+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-----~~~~~~~~Dv~~   86 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSAN   86 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTCEEEECCTTC
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeEEEEecCCC
Confidence            567888888887773   345566699999999999988877665542     346777888764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.51  E-value=3.4  Score=32.69  Aligned_cols=75  Identities=21%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024021          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~  173 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++..+.........+  .++.++.+|+.+..           ..+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678877765542   234555589999999999988877776665543  46899999998721           124


Q ss_pred             CeeEEEecccc
Q 024021          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~~D~v~~~~~~  184 (274)
                      +.|+++.+..+
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=89.45  E-value=0.35  Score=40.59  Aligned_cols=94  Identities=13%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             CCC-eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCCCCCCCCeeEEEec
Q 024021          108 PKG-RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFTWCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~-~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~D~v~~~  181 (274)
                      ++. +||-.|+  |.|..+.++++ .|++|++++.+++.++.+++.-..    .-+.....  +.......+.+|+|+..
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~~~~~~~~~~d~vid~  223 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK----EVLAREDVMAERIRPLDKQRWAAAVDP  223 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS----EEEECC---------CCSCCEEEEEEC
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc----EEEecCCcHHHHHHHhcCCcccEEEEC
Confidence            443 8999997  56677777766 788999999998888888653211    00111111  11111123469999854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -.-         ..+....++++++|.+++...
T Consensus       224 ~g~---------~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          224 VGG---------RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             STT---------TTHHHHHHTEEEEEEEEECSC
T ss_pred             CcH---------HHHHHHHHhhccCCEEEEEee
Confidence            321         135677889999999887543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.30  E-value=8.4  Score=31.95  Aligned_cols=62  Identities=19%  Similarity=0.091  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..+++||=.|++.|.   ++..|++.|++|++++.+++.++.+...+...+...++.++.+|+.+
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS   70 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence            345788888877653   23455558999999999998887777665544322368889999876

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=89.30  E-value=1.9  Score=34.62  Aligned_cols=102  Identities=13%  Similarity=-0.005  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCcchhHH----HhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          109 KGRALVPGCGTGYDVV----AMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~----~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      +++||=.|+ +|.++.    .|++ .|++|++++.++...+...+.+...+  .++.++.+|+.+...           .
T Consensus         4 ~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            4 IHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            456776664 555554    4455 78999999999877766655554433  468899999986211           1


Q ss_pred             CCeeEEEeccccccc-----C-hhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021          173 ELFDLIFDYTFFCAI-----E-PEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~-----~-~~~~-----------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +.+|+++.+......     + .+..           ..+++.+...++++|.++.+.
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            368999976543211     1 1221           234455666666677776654

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=89.30  E-value=3.1  Score=33.52  Aligned_cols=74  Identities=23%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCee
Q 024021          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D  176 (274)
                      .+.++++|=-|++.|.-   +..|++.|++|+..|.+..  +.+.+.....+  .++.++.+|+.+.      ...++.|
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            35677888888777643   4556669999999998742  22223333333  4688899999862      2235799


Q ss_pred             EEEeccc
Q 024021          177 LIFDYTF  183 (274)
Q Consensus       177 ~v~~~~~  183 (274)
                      +.+.+.-
T Consensus        82 iLVNNAG   88 (247)
T 4hp8_A           82 ILVNNAG   88 (247)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998754

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=89.26  E-value=0.67  Score=39.47  Aligned_cols=92  Identities=21%  Similarity=0.149  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-c--cCCCCCCCCeeEEEecc
Q 024021          108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D--FFTWCPTELFDLIFDYT  182 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d--~~~~~~~~~~D~v~~~~  182 (274)
                      ++.+||-+|+|. |..+.++++ .|++|++++.+++..+.+++.+   +. +.  ++.. +  ..... .+.+|+|+..-
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l---Ga-~~--vi~~~~~~~~~~~-~~g~D~vid~~  252 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL---GA-DD--YVIGSDQAKMSEL-ADSLDYVIDTV  252 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS---CC-SC--EEETTCHHHHHHS-TTTEEEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc---CC-ce--eeccccHHHHHHh-cCCCCEEEECC
Confidence            678999998752 444455555 6889999999988777776332   11 11  1111 1  00011 23699999543


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .-..        .++...++|+++|.++....
T Consensus       253 g~~~--------~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          253 PVHH--------ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             CSCC--------CSHHHHTTEEEEEEEEECSC
T ss_pred             CChH--------HHHHHHHHhccCCEEEEeCC
Confidence            2211        23567789999999887543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.24  E-value=3  Score=34.30  Aligned_cols=106  Identities=17%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC--hHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+  ....+.........+  .++.++.+|+.+...          
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456788888876552   234455589999999886  334444444444433  468899999987211          


Q ss_pred             -CCCeeEEEecccccc-------cChhHH-----------HHHHHHHHhcccCCcEEEEEEc
Q 024021          172 -TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 -~~~~D~v~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .+..|+++.+.....       .+.+.+           ..+++.+...++++|.|+.+.-
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence             146899998754321       222332           2345666777888888776553

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=89.23  E-value=0.84  Score=38.96  Aligned_cols=89  Identities=18%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             CCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCCh---HHHHHHHHHhhcCCCCcceEEEEc-ccCCCC--CCCCeeEEEe
Q 024021          109 KGRALVPGCGT-GYDVVAMAS-PERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKA-DFFTWC--PTELFDLIFD  180 (274)
Q Consensus       109 ~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~--~~~~~D~v~~  180 (274)
                      +.+||-+|+|. |..+..+++ .|++|++++.++   +..+.+++.-        .+.+.. |+.+..  ....+|+|+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g--------a~~v~~~~~~~~~~~~~~~~d~vid  252 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK--------TNYYNSSNGYDKLKDSVGKFDVIID  252 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT--------CEEEECTTCSHHHHHHHCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC--------CceechHHHHHHHHHhCCCCCEEEE
Confidence            78999999832 334444444 688999999998   7777776542        122211 111100  0146999986


Q ss_pred             cccccccChhHHHHHH-HHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWA-QKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l-~~~~~~L~pgG~~~~~~  213 (274)
                      .....        ..+ +...+.|+++|.++...
T Consensus       253 ~~g~~--------~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          253 ATGAD--------VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             CCCCC--------THHHHHHGGGEEEEEEEEECS
T ss_pred             CCCCh--------HHHHHHHHHHHhcCCEEEEEe
Confidence            43321        134 77889999999988754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.17  E-value=2.8  Score=33.95  Aligned_cols=76  Identities=17%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      .++++|=.|++ |.++.    .|++.|++|++++.++..++.....+...+...++.++.+|+.+...           .
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            35678877765 44444    44458999999999988777665555444333468889999987211           1


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      +.+|+++.+...
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368999976543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.10  E-value=0.15  Score=43.35  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~D  176 (274)
                      .++.+||-+|+  |.|..+..+++ .|++|+++ .+++.++.+++.-        .+.+. +-.+       ......+|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lG--------a~~i~-~~~~~~~~~~~~~~~~g~D  218 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLG--------ATPID-ASREPEDYAAEHTAGQGFD  218 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHT--------SEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcC--------CCEec-cCCCHHHHHHHHhcCCCce
Confidence            45689999994  45666667766 78899999 8888888886642        11122 1111       11234799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+..-.     .    ..+....++|+++|.+++..
T Consensus       219 ~vid~~g-----~----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          219 LVYDTLG-----G----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             EEEESSC-----T----HHHHHHHHHEEEEEEEEESC
T ss_pred             EEEECCC-----c----HHHHHHHHHHhcCCeEEEEc
Confidence            9985322     1    24677888999999988754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=89.07  E-value=2.2  Score=37.58  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-----------------
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-----------------  166 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-----------------  166 (274)
                      .++.+||=+|+  |.|..+..+++ .|+++++++.+++.++.+++.-...    -+.....|+                 
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~----vi~~~~~d~~~~~~~~~~~~~~~~~~  302 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEA----IIDRNAEGYRFWKDENTQDPKEWKRF  302 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCE----EEETTTTTCCSEEETTEECHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcE----EEecCcCcccccccccccchHHHHHH
Confidence            45679999986  45666667766 7899999999999999887643110    011001111                 


Q ss_pred             ----CCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          167 ----FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       167 ----~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                          .+......+|+|+..-.     .    ..+....++|++||.+++..
T Consensus       303 ~~~i~~~t~g~g~Dvvid~~G-----~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          303 GKRIRELTGGEDIDIVFEHPG-----R----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHTSCCEEEEEECSC-----H----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHhCCCCCcEEEEcCC-----c----hhHHHHHHHhhCCcEEEEEe
Confidence                00112357999985322     1    34677888999999988754

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.77  E-value=3.1  Score=33.74  Aligned_cols=86  Identities=16%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             eEEEEcCCcc-h-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          111 RALVPGCGTG-Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~G-~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +|.=||||.= . ++..+.+.|.+|+++|.+++.++.+.+.    +...  . ...|..+.   ...|+|+..     ++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~----g~~~--~-~~~~~~~~---~~~D~vi~a-----v~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD--E-AGQDLSLL---QTAKIIFLC-----TP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGG---TTCSEEEEC-----SC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhC----CCCc--c-ccCCHHHh---CCCCEEEEE-----CC
Confidence            5677887642 1 2233445788999999999887766432    2111  1 12233222   457988853     34


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +.....+++.+...++++..++-
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           67 IQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEE
Confidence            45566788888888888776543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=88.72  E-value=5.1  Score=32.12  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCC----cch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------
Q 024021          106 ALPKGRALVPGCG----TGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------  170 (274)
Q Consensus       106 ~~~~~~vLDiG~G----~G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----------  170 (274)
                      .+.++++|=-|++    -|. .+..|++.|++|+.++.+++..+.+.+.....+. .++.++.+|+.+..          
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHH
Confidence            4567888988853    332 3456677999999999998888877776655432 46889999998721          


Q ss_pred             -CCCCeeEEEecccccc----------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          171 -PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 -~~~~~D~v~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       .-++.|+++.+..+..          .+.+.+.           .........++.+|.|+....
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS  147 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY  147 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence             1257899987644321          1112221           122344566778898876553

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=88.57  E-value=6.2  Score=31.60  Aligned_cols=104  Identities=22%  Similarity=0.162  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCc-chhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021          108 PKGRALVPGCGT-GYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       108 ~~~~vLDiG~G~-G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  171 (274)
                      .++++|=.|++. |..+.    .|++.|++|+.++.++...+...+.....   ++..++.+|+.+..           .
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHHH
Confidence            456788888752 44444    44458999999998762112222221111   12467888987621           1


Q ss_pred             CCCeeEEEecccccc-----------cChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 TELFDLIFDYTFFCA-----------IEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~-----------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .++.|+++.+..+..           .+.+.+.           .+++.+...++++|.++.+..
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  149 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSY  149 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            246899998765432           2323222           233455566656677776553

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=88.38  E-value=10  Score=31.67  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcCCcc-hhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCe
Q 024021          106 ALPKGRALVPGCGTG-YDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~----~~~~~~~  175 (274)
                      ..++.+||=.|+|.. ..+.++++ .|+ .++++|.+++.++.+++.-.       ...+..   |..+    ......+
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa-------~~~i~~~~~~~~~~~~~~~~~~g~  230 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA-------MQTFNSSEMSAPQMQSVLRELRFN  230 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHGGGCSS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC-------eEEEeCCCCCHHHHHHhhcccCCc
Confidence            456689999998653 33445555 676 57899999999888876531       112221   1111    1123457


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+|+....-        ...++...++|++||.+++...
T Consensus       231 d~v~d~~G~--------~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          231 QLILETAGV--------PQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             EEEEECSCS--------HHHHHHHHHHCCTTCEEEECCC
T ss_pred             ccccccccc--------cchhhhhhheecCCeEEEEEec
Confidence            888743211        2356778899999999887553

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=87.89  E-value=8.4  Score=30.71  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++.++.+...+...+  .++.++.+|+.+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   66 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRN   66 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            45678877766542   234455589999999999988888777665443  468888999875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.67  E-value=1.7  Score=37.07  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhh---CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  179 (274)
                      ...++||=+||  |..+..++   .....|+..|.+.+.++.++..         +..+..|+.+..    .-..+|+|+
T Consensus        14 g~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~~---------~~~~~~d~~d~~~l~~~~~~~DvVi   82 (365)
T 3abi_A           14 GRHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKEF---------ATPLKVDASNFDKLVEVMKEFELVI   82 (365)
T ss_dssp             --CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTTT---------SEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CCccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhcc---------CCcEEEecCCHHHHHHHHhCCCEEE
Confidence            34578999998  44554433   3567899999999887766432         455667776511    114689998


Q ss_pred             ecc
Q 024021          180 DYT  182 (274)
Q Consensus       180 ~~~  182 (274)
                      ...
T Consensus        83 ~~~   85 (365)
T 3abi_A           83 GAL   85 (365)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            653

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=87.65  E-value=3.6  Score=32.94  Aligned_cols=75  Identities=16%  Similarity=0.018  Sum_probs=50.7

Q ss_pred             CCCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ..++++|=.|++.| .+    ..|++.|++|+.++.+++..+...+.+...+  .++.++.+|+.+...           
T Consensus         7 l~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            7 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34577887776544 44    3445589999999999887766555544332  468889999987210           


Q ss_pred             C-CCeeEEEecccc
Q 024021          172 T-ELFDLIFDYTFF  184 (274)
Q Consensus       172 ~-~~~D~v~~~~~~  184 (274)
                      . +..|+++.+..+
T Consensus        84 ~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           84 FHGKLNILVNNAGI   97 (260)
T ss_dssp             TTTCCCEEEECCCC
T ss_pred             cCCCCCEEEECCCC
Confidence            1 578999987543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.51  E-value=6.5  Score=31.37  Aligned_cols=73  Identities=15%  Similarity=0.078  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+++..+.......     .++.++.+|+.+...           .
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            446788888866552   234555689999999999887766655542     358899999987211           1


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus        81 g~id~lv~~Ag~   92 (259)
T 4e6p_A           81 GGLDILVNNAAL   92 (259)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999987543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=86.95  E-value=7  Score=31.30  Aligned_cols=76  Identities=14%  Similarity=0.021  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      .++++|=.|++.| .+    ..|++.|++|++++.+++..+.....+.......++.++.+|+.+...           .
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCc-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            3567888886544 44    344558999999999987766555444332112468899999987211           1


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      ++.|+++.+...
T Consensus        85 g~id~lv~~Ag~   96 (267)
T 2gdz_A           85 GRLDILVNNAGV   96 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            357999987654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=86.84  E-value=10  Score=30.70  Aligned_cols=58  Identities=17%  Similarity=0.083  Sum_probs=42.1

Q ss_pred             CCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          109 KGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   84 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTS   84 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            5678888876552   234555589999999999988877776665543  468888888875

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=86.78  E-value=3.7  Score=32.83  Aligned_cols=72  Identities=10%  Similarity=-0.000  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024021          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE  173 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~  173 (274)
                      .++++|=.|++.|.   .+..|++.|++|+.++.+++..+...+..     ..++.++.+|+.+...           .+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678888765542   23344558999999999987665544333     1458889999976211           13


Q ss_pred             CeeEEEecccc
Q 024021          174 LFDLIFDYTFF  184 (274)
Q Consensus       174 ~~D~v~~~~~~  184 (274)
                      +.|+++.+..+
T Consensus        79 ~iD~lv~nAg~   89 (254)
T 1hdc_A           79 SVDGLVNNAGI   89 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999987543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.74  E-value=3.6  Score=33.15  Aligned_cols=78  Identities=14%  Similarity=0.045  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D  176 (274)
                      ..++++|=.|++.|.   .+..+++.|++|+.++.+++..+...+.+...+....+.++.+|+.+..       .-++.|
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            446778887766542   2344555899999999998877766655543322246788899987621       124689


Q ss_pred             EEEecccc
Q 024021          177 LIFDYTFF  184 (274)
Q Consensus       177 ~v~~~~~~  184 (274)
                      +++.+...
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99977543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.72  E-value=6.4  Score=31.92  Aligned_cols=104  Identities=17%  Similarity=0.088  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHH-HHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.| .+.    .|++.|++|+.++.++.. .+...+.+...+  .++.++.+|+.+...          
T Consensus        27 ~~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           27 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            34567777776544 444    444589999999987643 333333333332  468889999876210          


Q ss_pred             -CCCeeEEEecccccc------cChhHHH-----------HHHHHHHhcccCCcEEEEEE
Q 024021          172 -TELFDLIFDYTFFCA------IEPEMRA-----------AWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       172 -~~~~D~v~~~~~~~~------~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~  213 (274)
                       .+..|+++.+..+..      .+.+.+.           .+++.+...++.+|.++.+.
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  163 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  163 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence             136899998754332      2223322           23455666666678777654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=86.60  E-value=3.2  Score=32.18  Aligned_cols=126  Identities=10%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             eEEEEcCCcchhH----HHhh-CCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024021          111 RALVPGCGTGYDV----VAMA-SPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD  180 (274)
Q Consensus       111 ~vLDiG~G~G~~~----~~l~-~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~~  180 (274)
                      +||=.|+ +|..+    ..|+ +.|++|++++.+++ .++....   .   ..++.++.+|+.+..    .-..+|+|+.
T Consensus         7 ~vlVtGa-sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~---~---~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            7 YITILGA-AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII---D---HERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             EEEEEST-TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH---T---STTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEeC-CcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc---C---CCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            4777774 44443    4455 58899999999876 4433221   1   146899999998621    1136899997


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEE-EEccCCCCCCCC-----------CcccCHHHHHHHHhcCCCcEEEEee
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDHVGGP-----------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +.....+  . ...+++.+.+  ...|.++. ..........+.           .|..+.....++++..|+...-+..
T Consensus        80 ~ag~~n~--~-~~~~~~~~~~--~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~~i~~~~vrp  154 (221)
T 3r6d_A           80 GAMESGS--D-MASIVKALSR--XNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTILRL  154 (221)
T ss_dssp             SCCCCHH--H-HHHHHHHHHH--TTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             cCCCCCh--h-HHHHHHHHHh--cCCCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            7654322  1 2333333332  11244544 433322211110           2333467778888888887765554

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.49  E-value=11  Score=30.11  Aligned_cols=60  Identities=10%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   71 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITD   71 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            446788888887663   234556689999999999988877776665543  468889999875

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=86.32  E-value=11  Score=30.10  Aligned_cols=63  Identities=16%  Similarity=0.069  Sum_probs=43.4

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..+++.|++|+.++.+++.++...+.+.......++.++.+|+.+
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~   70 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD   70 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence            3456788888877653   23455568999999999998877776655431111348888888875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=86.19  E-value=1.7  Score=36.31  Aligned_cols=91  Identities=16%  Similarity=0.126  Sum_probs=58.2

Q ss_pred             CCC-eEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-cc----CCCCCCCCeeEE
Q 024021          108 PKG-RALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DF----FTWCPTELFDLI  178 (274)
Q Consensus       108 ~~~-~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~----~~~~~~~~~D~v  178 (274)
                      ++. +||-.|+  |.|..+..+++ .|+++++++.+++.++.+++.-.     +  ..+.. +.    ........+|+|
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa-----~--~v~~~~~~~~~~~~~~~~~~~d~v  221 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA-----S--EVISREDVYDGTLKALSKQQWQGA  221 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC-----S--EEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-----c--EEEECCCchHHHHHHhhcCCccEE
Confidence            443 8999996  55666666666 68899999999888888876421     1  11111 11    111223469999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +..-.     .    ..+....++++++|.+++...
T Consensus       222 id~~g-----~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          222 VDPVG-----G----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EESCC-----T----HHHHHHHTTEEEEEEEEECCC
T ss_pred             EECCc-----H----HHHHHHHHhhcCCCEEEEEec
Confidence            85322     1    246778899999999887543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=85.90  E-value=2.7  Score=34.09  Aligned_cols=77  Identities=12%  Similarity=0.030  Sum_probs=53.8

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  171 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3556788888866552   234555589999999999988877766665543  46889999998721           1


Q ss_pred             CCCeeEEEecccc
Q 024021          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~~D~v~~~~~~  184 (274)
                      .++.|+++.+..+
T Consensus       101 ~g~iD~lv~nAg~  113 (271)
T 4ibo_A          101 GIDVDILVNNAGI  113 (271)
T ss_dssp             TCCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2468999987543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=85.87  E-value=11  Score=30.23  Aligned_cols=58  Identities=9%  Similarity=-0.056  Sum_probs=41.5

Q ss_pred             CCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          109 KGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   64 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTD   64 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCC
Confidence            4677777776552   234455589999999999988877776665543  467888888875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=85.53  E-value=13  Score=31.74  Aligned_cols=99  Identities=13%  Similarity=-0.003  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .+.+||.++.+.|.++..++..  .++.+.-|--.....+.|...++..+ ++++...  .+ .....||+|+....=  
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~-~~~~~~~~v~~~lpk--  110 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKVPK--  110 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS-CCCSSCSEEEEECCS--
T ss_pred             CCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc-ccccCCCEEEEEcCC--
Confidence            4468999999999999888753  34555435555555666777776543 3565433  22 234579998853321  


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                       ........+..+...|++|+.+++...
T Consensus       111 -~~~~l~~~L~~l~~~l~~~~~i~~~g~  137 (375)
T 4dcm_A          111 -TLALLEQQLRALRKVVTSDTRIIAGAK  137 (375)
T ss_dssp             -CHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred             -CHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence             224556778999999999999877653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=85.43  E-value=8.9  Score=30.74  Aligned_cols=67  Identities=12%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             CeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CCCe
Q 024021          110 GRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TELF  175 (274)
Q Consensus       110 ~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~  175 (274)
                      ++||=-|++.|.-   +..|++.|++|+.+|.+++..+...+.   .   .++.++.+|+.+...           -++.
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~---~---~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE---R---PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT---C---TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---c---CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4677777777632   455666999999999998766544322   1   458888899876211           1457


Q ss_pred             eEEEecc
Q 024021          176 DLIFDYT  182 (274)
Q Consensus       176 D~v~~~~  182 (274)
                      |+++.+.
T Consensus        77 DiLVNNA   83 (247)
T 3ged_A           77 DVLVNNA   83 (247)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            7777654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=85.27  E-value=8.4  Score=31.19  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=44.0

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++.++...+.+...+  .++.++.+|+.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d   92 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQ   92 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            4567888888877553   234555689999999999877777666655443  468888899875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.99  E-value=14  Score=30.05  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=54.5

Q ss_pred             CeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC---CCeeEEEeccc
Q 024021          110 GRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT---ELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~G~G~~--~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~---~~~D~v~~~~~  183 (274)
                      ++|.=+|+|.=..  +..+++.|.+|+.+|.+++.++..++........+.......+... ....   ..+|+|+..  
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~--   81 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL--   81 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC--
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE--
Confidence            4788898864222  2344457889999999998877766542100000000000001111 0111   268988853  


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                         ++......+++.+...++++..++..
T Consensus        82 ---v~~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           82 ---TKAQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             ---SCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ---eccccHHHHHHHHHHhcCCCCEEEEe
Confidence               33445577888888888888766654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=84.59  E-value=6.6  Score=31.80  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=51.2

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEeccccc
Q 024021          111 RALVPGCGT-GY-DVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFC  185 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~D~v~~~~~~~  185 (274)
                      +|.=||+|. |. ++..+++.|.  +|+++|.+++.++.+++.    +...  . ...|..+..  . ..|+|+..    
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~~~--~-~~~~~~~~~--~~~aDvVila----   69 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID--E-GTTSIAKVE--DFSPDFVMLS----   69 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS--E-EESCGGGGG--GTCCSEEEEC----
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CCcc--c-ccCCHHHHh--cCCCCEEEEc----
Confidence            577787654 21 2233344676  899999999887776532    2111  1 122332222  2 57888843    


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                       +++.....++..+...++++..++.
T Consensus        70 -vp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           70 -SPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             -SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             4444556777888888888875554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.56  E-value=3.6  Score=33.65  Aligned_cols=96  Identities=16%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             CeEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC---------CCC--------cceEEEEcccCCCC
Q 024021          110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---------PNA--------KFVSFLKADFFTWC  170 (274)
Q Consensus       110 ~~vLDiG~G~G--~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~--------~~~~~~~~d~~~~~  170 (274)
                      .+|.=||+|.=  ..+..++..|.+|+.+|.+++.++.+++.....         +..        .++.. ..|..+..
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHHh
Confidence            46777887652  223344458999999999999988887653110         000        11222 22222211


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                        ...|+|+..-.-   +.+....++.++...++|+.+++.
T Consensus        84 --~~aDlVi~av~~---~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           84 --KDADLVIEAVPE---SLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             --TTCSEEEECCCS---CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --ccCCEEEEeccC---cHHHHHHHHHHHHhhCCCCcEEEE
Confidence              357988853221   113556788889999998876653

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=84.39  E-value=4.4  Score=35.49  Aligned_cols=93  Identities=13%  Similarity=0.018  Sum_probs=58.6

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----------------
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----------------  167 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~----------------  167 (274)
                      .++.+||=.|+  |.|..+..+++ .|+++++++.+++.++.+++.-.    ..-+.....|+.                
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~~~~~~~~~~~~  294 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGC----DLVINRAELGITDDIADDPRRVVETGRK  294 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----CCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----CEEEecccccccccccccccccchhhhH
Confidence            45689999986  44566666666 78999999999998888865321    111111111210                


Q ss_pred             ------CCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          168 ------TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       168 ------~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                            +.. ...+|+|+....-         ..+....++|++||.++...
T Consensus       295 ~~~~v~~~~-g~g~Dvvid~~G~---------~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          295 LAKLVVEKA-GREPDIVFEHTGR---------VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHH-SSCCSEEEECSCH---------HHHHHHHHHSCTTCEEEESC
T ss_pred             HHHHHHHHh-CCCceEEEECCCc---------hHHHHHHHHHhcCCEEEEEe
Confidence                  011 3469999853221         24567788999999988754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=84.37  E-value=7.6  Score=31.43  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++..+.........+  .++.++.+|+.+
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   93 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSE   93 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCC
Confidence            3556788888766552   234455589999999998877766666554443  468888999875

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=84.26  E-value=5.8  Score=32.12  Aligned_cols=75  Identities=15%  Similarity=0.059  Sum_probs=49.9

Q ss_pred             CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----------
Q 024021          108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~-----------  171 (274)
                      .++++|=.|++.| .+    ..|++.|++|+.++.+++.++...+.+...+. ..++.++.+|+.+...           
T Consensus         5 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            4567777776554 44    34455899999999998877766555544321 1268899999987210           


Q ss_pred             CCCeeEEEeccc
Q 024021          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~~D~v~~~~~  183 (274)
                      .+++|+++.+..
T Consensus        84 ~g~iD~lv~nAg   95 (280)
T 1xkq_A           84 FGKIDVLVNNAG   95 (280)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            136899998754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=84.12  E-value=6.9  Score=33.25  Aligned_cols=96  Identities=9%  Similarity=-0.018  Sum_probs=59.4

Q ss_pred             CeEEEEcCCcch--hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEcccCCCCCCCCeeEEEec
Q 024021          110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~G~G~--~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~D~v~~~  181 (274)
                      ++|.=||+|.=.  ++..+++.|.+|+.+|.+++.++..++.....      .+..++.+. .|..+..  ...|+|+..
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea~--~~aDvVila  106 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKASL--EGVTDILIV  106 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHHH--TTCCEEEEC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHHH--hcCCEEEEC
Confidence            578889886522  23445567889999999998888776653211      011122221 2221111  346888843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                           ++......+++.+...++++..++...
T Consensus       107 -----Vp~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          107 -----VPSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             -----CCHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             -----CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                 455567788899999999887766543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=84.11  E-value=4.5  Score=34.43  Aligned_cols=91  Identities=11%  Similarity=0.017  Sum_probs=57.0

Q ss_pred             CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCeeE
Q 024021          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~---~~~~~~~D~  177 (274)
                      .++.+||=+|++  .|..+.++++ .|++|+++. +++..+.+++.-.       ..++..   |+.+   ....+.+|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa-------~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA-------EEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC-------SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC-------cEEEECCCchHHHHHHHHccCCccE
Confidence            556899999983  6777777777 788998885 8888887765421       112221   1111   111235999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcc-cCCcEEEEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~~~~~~  213 (274)
                      |+..-.     .   ...++...++| ++||+++...
T Consensus       235 v~d~~g-----~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCIT-----N---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSC-----S---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCC-----c---hHHHHHHHHHhhcCCCEEEEEe
Confidence            984322     1   13456677788 6999988754

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=83.98  E-value=16  Score=29.66  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.....+...+  .++.++.+|+.+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d   88 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSD   88 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            446788888876653   234455589999999999988877776665443  468888888875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=83.74  E-value=14  Score=32.63  Aligned_cols=95  Identities=19%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CeEEEEcCCc-c-hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------------CCC-CcceEEEEcccCCCCCCC
Q 024021          110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------------LPN-AKFVSFLKADFFTWCPTE  173 (274)
Q Consensus       110 ~~vLDiG~G~-G-~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------------~~~-~~~~~~~~~d~~~~~~~~  173 (274)
                      .+|.-||+|. | .++..++..|..|+++|.+++.++.++.....             ... .....+ ..|. +.  -.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~--~~  113 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KE--LS  113 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GG--GT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HH--HC
Confidence            5799999987 3 33455667899999999999988877653210             000 011222 3343 11  24


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      ..|+|+..-. .  +.+....++.++...++|+.+++.
T Consensus       114 ~aDlVIeaVp-e--~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          114 TVDLVVEAVF-E--DMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             TCSEEEECCC-S--CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCCEEEEcCC-C--CHHHHHHHHHHHHhhCCCCeEEEe
Confidence            5798885432 1  112346778888888988877654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=83.57  E-value=8.7  Score=30.52  Aligned_cols=71  Identities=20%  Similarity=0.096  Sum_probs=47.5

Q ss_pred             CeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CCC
Q 024021          110 GRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL  174 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~  174 (274)
                      +++|=.|++.| .+.    .|++.|++|+.++.+++..+...+.+...+  .++.++.+|+.+...           .++
T Consensus         3 k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            3 KVALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46777776544 443    445589999999999877766555544332  458889999987210           136


Q ss_pred             eeEEEeccc
Q 024021          175 FDLIFDYTF  183 (274)
Q Consensus       175 ~D~v~~~~~  183 (274)
                      +|+++.+..
T Consensus        80 id~lv~nAg   88 (256)
T 1geg_A           80 FDVIVNNAG   88 (256)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=83.46  E-value=4.9  Score=31.80  Aligned_cols=74  Identities=11%  Similarity=0.052  Sum_probs=50.9

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  175 (274)
                      ..++++||=.|++.|.   .+..|++.|++|+.++.+++.++...+...     .++.+..+|+.+.       ...++.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~i   85 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNL   85 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCC
Confidence            3456788888876552   234455589999999999887777665543     3588899998762       122468


Q ss_pred             eEEEecccc
Q 024021          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+...
T Consensus        86 d~li~~Ag~   94 (249)
T 3f9i_A           86 DILVCNAGI   94 (249)
T ss_dssp             SEEEECCC-
T ss_pred             CEEEECCCC
Confidence            999987553

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=83.29  E-value=3.7  Score=27.97  Aligned_cols=64  Identities=16%  Similarity=-0.001  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~D~v~  179 (274)
                      ..+|+=+|+  |..+..++    +.| .+|+++|.+++..+...    .    ..+.+...|+.+..    .-..+|+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            357888988  65555443    377 79999999988776654    1    23677778876511    113689988


Q ss_pred             ecc
Q 024021          180 DYT  182 (274)
Q Consensus       180 ~~~  182 (274)
                      ...
T Consensus        75 ~~~   77 (118)
T 3ic5_A           75 SAA   77 (118)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.26  E-value=4.4  Score=33.28  Aligned_cols=76  Identities=11%  Similarity=0.034  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++.| .+.    .|++.|++|+.++.+++.++.....+...+. ..++.++.+|+.+...          
T Consensus        24 l~~k~vlVTGas~g-IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           24 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            44567777776544 444    4445899999999998877666555443321 1168899999987211          


Q ss_pred             -CCCeeEEEeccc
Q 024021          172 -TELFDLIFDYTF  183 (274)
Q Consensus       172 -~~~~D~v~~~~~  183 (274)
                       .+++|+++.+..
T Consensus       103 ~~g~iD~lvnnAG  115 (297)
T 1xhl_A          103 KFGKIDILVNNAG  115 (297)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence             136899998754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=83.21  E-value=16  Score=29.33  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-------------ChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-------------SDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.             +++.++...+.....+  .++.++.+|+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   88 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD   88 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            456788888877653   23455568999999997             6677766666655543  468888888875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.19  E-value=4.4  Score=33.39  Aligned_cols=76  Identities=14%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      ..+++||=.|++.|.   ++..|++.|++|+.++.+++.++.+.+.+...+  .++.++.+|+.+...           .
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            456788888887652   234555589999999999988887777665543  468999999987211           1


Q ss_pred             CCeeEEEecccc
Q 024021          173 ELFDLIFDYTFF  184 (274)
Q Consensus       173 ~~~D~v~~~~~~  184 (274)
                      +..|+++.+..+
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            368999987543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=83.17  E-value=15  Score=28.71  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=45.8

Q ss_pred             CCCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024021          107 LPKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  175 (274)
                      ..++++|=.|++ |..+..    |++.|++|++++.++...+...+..      .+++++.+|+.+.       ...+++
T Consensus         5 ~~~~~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~i   77 (244)
T 1cyd_A            5 FSGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV   77 (244)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCCCcEEecCCCHHHHHHHHHHcCCC
Confidence            345778877764 444444    4458999999999887665544332      2366778898762       112468


Q ss_pred             eEEEeccc
Q 024021          176 DLIFDYTF  183 (274)
Q Consensus       176 D~v~~~~~  183 (274)
                      |+++.+..
T Consensus        78 d~vi~~Ag   85 (244)
T 1cyd_A           78 DLLVNNAA   85 (244)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCc
Confidence            99998754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=83.07  E-value=4.1  Score=33.85  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             CCCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-C-CCCCCeeEEEe
Q 024021          106 ALPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W-CPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~D~v~~  180 (274)
                      ..++.+||=.|  .|.|..+..+++ .|++|++++ +++..+.+++.-.     +  ..+..+-.+ . ..-..+|+|+.
T Consensus       150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa-----~--~~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          150 VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA-----E--QCINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC-----S--EEEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC-----C--EEEeCCCcchhhhhccCCCEEEE
Confidence            34568999886  345666777766 788999987 5555777765421     1  122211111 0 01146999984


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      .-     ..+    .+....++|+++|.++..
T Consensus       222 ~~-----g~~----~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          222 LV-----GGD----VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             SS-----CHH----HHHHHGGGEEEEEEEEEC
T ss_pred             CC-----CcH----HHHHHHHhccCCCEEEEe
Confidence            32     211    237788999999998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=82.95  E-value=7  Score=32.50  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-----EcccCCCCCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-----KADFFTWCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~--~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-----~~d~~~~~~~~~~D~v~  179 (274)
                      ....+|.=+|+|.=..  +..|++.|..|+.+ .+++.++..++.-..... ....+.     ..|.   .....+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~-~~~~~~~~~~~~~~~---~~~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLET-QSFDEQVKVSASSDP---SAVQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEEC-SSCEEEECCEEESCG---GGGTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEc-CCCcEEEeeeeeCCH---HHcCCCCEEE
Confidence            4457899998875332  33445578899999 888888777654211000 111110     1111   1124689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..-     +......+++.+...++++..++....
T Consensus        92 lav-----k~~~~~~~l~~l~~~l~~~~~iv~~~n  121 (318)
T 3hwr_A           92 FCV-----KSTDTQSAALAMKPALAKSALVLSLQN  121 (318)
T ss_dssp             ECC-----CGGGHHHHHHHHTTTSCTTCEEEEECS
T ss_pred             EEc-----ccccHHHHHHHHHHhcCCCCEEEEeCC
Confidence            532     333446788889999998887766543

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=82.60  E-value=16  Score=29.44  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcCC----cch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024021          107 LPKGRALVPGCG----TGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------  170 (274)
Q Consensus       107 ~~~~~vLDiG~G----~G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------  170 (274)
                      ..++++|=.|++    .|. .+..+++.|++|+.++.++ ..+..++.....   .++.++.+|+.+..           
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEF---NPAAVLPCDVISDQEIKDLFVELGK   99 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGG---CCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhc---CCceEEEeecCCHHHHHHHHHHHHH
Confidence            456788888844    332 3455666899999999987 122222222222   34889999998721           


Q ss_pred             CCCCeeEEEecccc
Q 024021          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~~D~v~~~~~~  184 (274)
                      ..++.|+++.+..+
T Consensus       100 ~~g~id~li~nAg~  113 (280)
T 3nrc_A          100 VWDGLDAIVHSIAF  113 (280)
T ss_dssp             HCSSCCEEEECCCC
T ss_pred             HcCCCCEEEECCcc
Confidence            12468999987654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=82.59  E-value=4.1  Score=34.73  Aligned_cols=92  Identities=16%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC-CCCCCCeeEEE
Q 024021          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~-~~~~~~~D~v~  179 (274)
                      .++.+||=.|  .|.|..+..+++ .|++|++++ +++..+.+++.    +. +  ..+..   |+.+ ......+|+|+
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l----Ga-~--~v~~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL----GA-D--DVIDYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT----TC-S--EEEETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc----CC-C--EEEECCchHHHHHHhhcCCCCEEE
Confidence            3567999998  345666666666 788999998 67767766543    21 1  11211   1111 11124699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..-.-.       ...+....++++++|.++...
T Consensus       254 d~~g~~-------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          254 DNVGGS-------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             ESSCTT-------HHHHGGGGBCSSSCCEEEESC
T ss_pred             ECCCCh-------hhhhHHHHHhhcCCcEEEEeC
Confidence            543211       023466778899999988753

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=82.58  E-value=5.8  Score=31.25  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             CeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEEEcccCCCCC-----------CC
Q 024021          110 GRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFTWCP-----------TE  173 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~-----------~~  173 (274)
                      +++|=.|++ |..+..    |++.|++|+.++.++...+...... ...  ..++.++.+|+.+...           .+
T Consensus         3 k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY--ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            467777755 444444    4458999999999987776655544 222  2468999999987211           13


Q ss_pred             CeeEEEeccc
Q 024021          174 LFDLIFDYTF  183 (274)
Q Consensus       174 ~~D~v~~~~~  183 (274)
                      .+|+++.+..
T Consensus        80 ~id~li~~Ag   89 (250)
T 2cfc_A           80 AIDVLVNNAG   89 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899998754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=82.55  E-value=16  Score=29.59  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=42.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++.++.....+...+  .++.++.+|+.+
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   68 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGD   68 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCC
Confidence            446778888876552   234555689999999999988877766664433  467888888865

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=82.10  E-value=13  Score=29.95  Aligned_cols=75  Identities=15%  Similarity=0.061  Sum_probs=45.4

Q ss_pred             CCCCeEEEEcCCc-chhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCGT-GYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++. |..+.    .|++.|++|+.++.++...+.+.+.....   +++.++.+|+.+...          
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKFLEE   95 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467888888752 44444    44458999999998875222222222212   236788899886210          


Q ss_pred             -CCCeeEEEecccc
Q 024021          172 -TELFDLIFDYTFF  184 (274)
Q Consensus       172 -~~~~D~v~~~~~~  184 (274)
                       .++.|+++.+..+
T Consensus        96 ~~g~iD~lv~~Ag~  109 (285)
T 2p91_A           96 NWGSLDIIVHSIAY  109 (285)
T ss_dssp             HTSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1468999987543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=82.01  E-value=19  Score=29.31  Aligned_cols=60  Identities=10%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+            ++.++.....+...+  .++.++.+|+.+
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~  100 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRD  100 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence            456788888887663   234555689999999987            566665555544443  468888998875

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=81.93  E-value=20  Score=29.51  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC------------hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS------------DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.+            ++.++.........+  .++.++.+|+.+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d  118 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRD  118 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence            446778888876653   234555689999999886            555555554444433  468888999875

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=81.88  E-value=5.4  Score=32.85  Aligned_cols=112  Identities=9%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             CeEEEEcCCcch--hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGY--DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~--~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      ++|.=||+|.=.  ++..+++.|.+|+++|.+++.++.+.+.    +    ......+..+..  ...|+|+..     +
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----g----~~~~~~~~~e~~--~~aDvvi~~-----v   72 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE----G----ACGAAASAREFA--GVVDALVIL-----V   72 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CSEEESSSTTTT--TTCSEEEEC-----C
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc----C----CccccCCHHHHH--hcCCEEEEE-----C
Confidence            578888776421  2234445889999999999887776543    1    111233333322  346988853     2


Q ss_pred             Ch-hHHHHHH---HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          188 EP-EMRAAWA---QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       188 ~~-~~~~~~l---~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +. .....++   +.+...+++|..++-.. +.        ...+..++.+.+++.|...+.
T Consensus        73 p~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~--------~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           73 VNAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TI--------SSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             SSHHHHHHHHC--CCCGGGSCTTCEEEECS-CC--------CHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCHHHHHHHHhChhhHHhhCCCCCEEEecC-CC--------CHHHHHHHHHHHHHcCCeEEe
Confidence            32 2344454   56667788877654322 11        011345666777777766554

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=81.86  E-value=12  Score=30.00  Aligned_cols=104  Identities=12%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCC-cchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021          108 PKGRALVPGCG-TGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       108 ~~~~vLDiG~G-~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  171 (274)
                      .++++|=.|++ +|..+    ..|++.|++|+.++.+++..+..++.....   .++.++.+|+.+..           .
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45788888875 24444    345558999999998875212222221112   23678889988621           0


Q ss_pred             CCCeeEEEeccccc----------ccChhHHH-----------HHHHHHHhcccCCcEEEEEEc
Q 024021          172 TELFDLIFDYTFFC----------AIEPEMRA-----------AWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       172 ~~~~D~v~~~~~~~----------~~~~~~~~-----------~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .++.|+++.+..+.          ..+.+.+.           .+++.+...++++|.++.+.-
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            14689999875432          22223222           233455566665777776553

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=81.81  E-value=16  Score=29.42  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.+++..+.....+...+  .++.++.+|+.+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d   88 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--LEGRGAVLNVND   88 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--CCCEEEECCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEEeCCC
Confidence            345677777765542   234455589999999999887777666554433  357788888765

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=81.60  E-value=18  Score=28.71  Aligned_cols=61  Identities=18%  Similarity=0.115  Sum_probs=44.2

Q ss_pred             CCCCeEEEEcC-Ccch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGC-GTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~-G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|+ |.|.   .+..+++.|++|+.++.+++..+.....+...+ ..++.++.+|+.+
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~   84 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTS   84 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTC
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCC
Confidence            44678888887 5543   345666689999999999988877776664432 2468899999875

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=81.27  E-value=6.5  Score=32.01  Aligned_cols=73  Identities=12%  Similarity=0.079  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D  176 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.++.++...+.+.+..     ..++.++.+|+.+..       .-++.|
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD   88 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGAD   88 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCC
Confidence            456788888876542   23344558999999999988766655443     257999999998721       114789


Q ss_pred             EEEecccc
Q 024021          177 LIFDYTFF  184 (274)
Q Consensus       177 ~v~~~~~~  184 (274)
                      +++.+..+
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99987543

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=81.25  E-value=12  Score=30.44  Aligned_cols=85  Identities=13%  Similarity=0.211  Sum_probs=53.2

Q ss_pred             CeEEEEcC-Cc-ch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          110 GRALVPGC-GT-GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~-G~-G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .+|.=||+ |. |. ++..+++.|.+|+++|.+++.++.+.+    .+    +..  .+..+..  ...|+|+..     
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~g----~~~--~~~~~~~--~~aDvVi~a-----   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG----MG----IPL--TDGDGWI--DEADVVVLA-----   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----TT----CCC--CCSSGGG--GTCSEEEEC-----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----cC----CCc--CCHHHHh--cCCCEEEEc-----
Confidence            47888988 64 22 233445578899999999987776654    12    111  1222211  357988843     


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +++.....+++.+...+++|..++-
T Consensus        75 v~~~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           75 LPDNIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEEE
Confidence            3445567788888888888765543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=81.24  E-value=19  Score=28.83  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeC-------------ChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEI-------------SDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ..++++|=.|++.|.   .+..|++.|++|+.+|.             +++.++...+.....+  .++.++.+|+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~   84 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRD   84 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence            456788888877653   23455568999999998             5666666555544433  468888888875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=81.19  E-value=8  Score=31.30  Aligned_cols=109  Identities=13%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024021          111 RALVPGCGT-GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~  188 (274)
                      +|.=+|+|. |. ++..+++ |.+|+.+|.+++..+...+.-        +...  +..+..  ...|+|+..-.    +
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g--------~~~~--~~~~~~--~~~D~vi~~v~----~   65 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEF--------GSEA--VPLERV--AEARVIFTCLP----T   65 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHH--------CCEE--CCGGGG--GGCSEEEECCS----S
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCC--------Cccc--CHHHHH--hCCCEEEEeCC----C
Confidence            577788875 32 3345667 889999999988777665431        1111  111111  35798885322    1


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +.....+++.+...+++|..++... ..        ...+.+++.+.+...|...+.
T Consensus        66 ~~~~~~v~~~l~~~l~~~~~vv~~s-~~--------~~~~~~~l~~~~~~~g~~~~~  113 (289)
T 2cvz_A           66 TREVYEVAEALYPYLREGTYWVDAT-SG--------EPEASRRLAERLREKGVTYLD  113 (289)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECS-CC--------CHHHHHHHHHHHHTTTEEEEE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECC-CC--------CHHHHHHHHHHHHHcCCEEEE
Confidence            2234567778888888877655432 11        011345677777776755543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=81.11  E-value=4.2  Score=32.52  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ...++++|=.|++.|.   .+..|++.|++|+.++.+++..+.....+...+  .++.++.+|+.+...           
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3456788888776653   234455589999999999988777766665543  568999999987211           


Q ss_pred             CCCeeEEEecccc
Q 024021          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~~D~v~~~~~~  184 (274)
                      .++.|+++.+...
T Consensus        87 ~g~id~lv~nAg~   99 (256)
T 3gaf_A           87 FGKITVLVNNAGG   99 (256)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1368999987543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=81.08  E-value=11  Score=30.25  Aligned_cols=89  Identities=10%  Similarity=0.066  Sum_probs=54.2

Q ss_pred             CCeEEEEcCCc-chh-HHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          109 KGRALVPGCGT-GYD-VVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~-G~~-~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ..+|.=+|||. |.. +..+++.|.+ |+.+|.+++.++.+.+..   +    +.. ..|..+..  ...|+|+..    
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g----~~~-~~~~~~~~--~~~Dvvi~a----   75 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---E----AEY-TTDLAEVN--PYAKLYIVS----   75 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---T----CEE-ESCGGGSC--SCCSEEEEC----
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---C----Cce-eCCHHHHh--cCCCEEEEe----
Confidence            35788898863 222 2333446777 899999998877766543   1    222 22333222  357988853    


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                       .++.....+++.+...+++|..++..
T Consensus        76 -v~~~~~~~v~~~l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           76 -LKDSAFAELLQGIVEGKREEALMVHT  101 (266)
T ss_dssp             -CCHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             -cCHHHHHHHHHHHHhhcCCCcEEEEC
Confidence             34444567778888888887765543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=81.06  E-value=5  Score=32.15  Aligned_cols=75  Identities=15%  Similarity=-0.001  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------  171 (274)
                      ..+++||=.|++.| ++.    .|++.|++|+.++.+++.++.....+...+  .++.++.+|+.+...           
T Consensus        27 l~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            44678888876554 443    444589999999999988877776665543  468999999987211           


Q ss_pred             CCCeeEEEecccc
Q 024021          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~~D~v~~~~~~  184 (274)
                      .++.|+++.+...
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1468999987554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.00  E-value=8.6  Score=29.56  Aligned_cols=93  Identities=14%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             eEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024021          111 RALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF  184 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~  184 (274)
                      +||=.|+ +|..+..++    +.|.+|++++.++......   .     ..+++++.+|+.+...  -..+|+|+.....
T Consensus         2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~-----~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR---L-----GATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---T-----CTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc---c-----CCCceEEecccccccHhhcccCCEEEECCcc
Confidence            5666664 566665544    4789999999988754422   1     1358999999987422  2368999977654


Q ss_pred             ccc--ChhHHHHHHHHHHhcccC-CcEEEEE
Q 024021          185 CAI--EPEMRAAWAQKIKDFLKP-DGELITL  212 (274)
Q Consensus       185 ~~~--~~~~~~~~l~~~~~~L~p-gG~~~~~  212 (274)
                      .+-  ...........+.+.++. |+.+++.
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            311  112223344566666654 4555554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=80.59  E-value=5  Score=35.49  Aligned_cols=90  Identities=9%  Similarity=0.015  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~  179 (274)
                      .++|+=+|||.  .+..++    ..|..|+.+|.+++.++.+...+       .+..+.||..++     ..-+..|+++
T Consensus         3 ~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~i   73 (461)
T 4g65_A            3 AMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLV   73 (461)
T ss_dssp             CEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred             cCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence            35777777764  544444    46889999999999998887665       367889999872     2235689888


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      +.-     +.+....+...+.+.+.+.-..+..
T Consensus        74 a~t-----~~De~Nl~~~~~Ak~~~~~~~~iar  101 (461)
T 4g65_A           74 AVT-----NTDETNMAACQVAFTLFNTPNRIAR  101 (461)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred             EEc-----CChHHHHHHHHHHHHhcCCccceeE
Confidence            521     2233344555666666555444443

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=80.26  E-value=5.9  Score=31.67  Aligned_cols=75  Identities=20%  Similarity=0.076  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCC-cchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------
Q 024021          107 LPKGRALVPGCG-TGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G-~G~~~~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  171 (274)
                      ..++++|=.|++ +|..+..    |++.|++|+.++.++...+...+.....   ..+.++.+|+.+...          
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHHHH
Confidence            345788888875 2445444    4447999999998875222222222212   237888999987211          


Q ss_pred             -CCCeeEEEecccc
Q 024021          172 -TELFDLIFDYTFF  184 (274)
Q Consensus       172 -~~~~D~v~~~~~~  184 (274)
                       .++.|+++.+...
T Consensus        83 ~~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           83 AFGGLDYLVHAIAF   96 (261)
T ss_dssp             HHSSEEEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1368999987543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=80.20  E-value=12  Score=29.04  Aligned_cols=68  Identities=7%  Similarity=-0.008  Sum_probs=45.9

Q ss_pred             eEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--------CCCCCeeEE
Q 024021          111 RALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------CPTELFDLI  178 (274)
Q Consensus       111 ~vLDiG~G~G~~~----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~~D~v  178 (274)
                      ++|=.|++.| .+    ..|++.|++|+.++.+++.++......     ..++.++.+|+.+.        .....+|++
T Consensus         3 ~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~l   76 (230)
T 3guy_A            3 LIVITGASSG-LGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPSTV   76 (230)
T ss_dssp             CEEEESTTSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSEE
T ss_pred             EEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCEE
Confidence            4666776544 43    344558999999999988777665544     24688899999872        112346999


Q ss_pred             Eecccc
Q 024021          179 FDYTFF  184 (274)
Q Consensus       179 ~~~~~~  184 (274)
                      +.+...
T Consensus        77 v~~Ag~   82 (230)
T 3guy_A           77 VHSAGS   82 (230)
T ss_dssp             EECCCC
T ss_pred             EEeCCc
Confidence            876543

>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U

Probab=80.18  E-value=2.7  Score=40.74  Aligned_cols=96  Identities=17%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~  183 (274)
                      ...+.++||+|+|.=.=...|..+...|+.+|.-|-+       .....+....+|++.|+..  .....++|.|.|...
T Consensus       819 ~~~~~~~lDlGTGPE~RiLsLiP~~~pvtm~D~RP~a-------e~~~~w~~~T~f~~~DyL~~~~~~~~~~D~vt~i~S  891 (1289)
T 1ej6_A          819 VYDGDVVLDLGTGPEAKILELIPATSPVTCVDIRPTA-------QPSGCWNVRTTFLELDYLSDGWITGVRGDIVTCMLS  891 (1289)
T ss_dssp             CCTTCCEEEESCCSSCGGGGTSCTTSCEEEEESSCCC-------SCSTTBSSCEEEEESCTTSSSCGGGCCCSEEEECSC
T ss_pred             ecccceEEEccCCCcceeeeecCCCCceEEecccCch-------hhhccccccceeeEccccccceeecCCCcEEEEEee
Confidence            4556899999998877777777788899999997742       1112234568999999987  333457999999888


Q ss_pred             ccccCh---hHHHHHHHHHHhcccCCcE
Q 024021          184 FCAIEP---EMRAAWAQKIKDFLKPDGE  208 (274)
Q Consensus       184 ~~~~~~---~~~~~~l~~~~~~L~pgG~  208 (274)
                      ++..-.   -.+...++++.+.+++.|.
T Consensus       892 LGAA~A~a~~tl~~~~~q~l~~~~~~~~  919 (1289)
T 1ej6_A          892 LGAAAAGKSMTFDAAFQQLIKVLSKSTA  919 (1289)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHTSCC
T ss_pred             chhhhhccCCcHHHHHHHHHHHHHhcCc
Confidence            765311   1245677777777777663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	6e-26
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-17
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	1e-10
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	2e-09
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	7e-07
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	6e-06
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	7e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-05
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	7e-05
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-04
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	5e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	0.001
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.004

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 6e-26
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 21/182 (11%)

Query: 78  WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
           W+  W  G T +   Q   ++  HL        G R   P CG   ++   A     VVG
Sbjct: 13  WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVG 72

Query: 136 LEISDIAIKKAEELSSSLP----------------NAKFVSFLKADFFTWCPTELFD--L 177
           +EIS++ I++     +                   ++  +S      F    T +    +
Sbjct: 73  VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDM 132

Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISDHVGGPPYKVSVSDYEEVL 236
           I+D     AI P  R  +A  +   L    + +  +         GPP+ V  ++ E + 
Sbjct: 133 IWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLF 192

Query: 237 QP 238
             
Sbjct: 193 GK 194

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 76.7 bits (187), Expect = 2e-17
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           +      +P  R LVP CG   D+  ++    +VVG E+S+ A+++        P+    
Sbjct: 12  YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQ 71

Query: 160 SFLKADFFTWC-------------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD 206
              K                            +D     A+  +MR  + Q ++  +   
Sbjct: 72  GDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131

Query: 207 GE-LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK 261
              L+  +      + GPP+ V  +    V+    ++   +          +G + 
Sbjct: 132 CSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDTLHSSARGLKA 186

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 10/158 (6%)

Query: 95  APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS 152
           A II  L         + L  G   G     +A    +  V  +E +   +++  +  + 
Sbjct: 61  AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120

Query: 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWA--QKIKDFLKPDGELI 210
             N   +           P E  +++           +   A    +  K FLK  G  +
Sbjct: 121 RENIIPI-----LGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

Query: 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248
             +   S  V   P K    + +E+L+  GF+ +  VD
Sbjct: 176 IAIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVD 212

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 4/140 (2%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
           L  +  +  GR L  GCG G + + +A+    V   + +  ++   E + ++       +
Sbjct: 23  LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82

Query: 161 FLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF---PIS 217
            L          E +D I        +E +        ++   KP G  + +     P  
Sbjct: 83  DLVDLNTLTFDGE-YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF 141

Query: 218 DHVGGPPYKVSVSDYEEVLQ 237
               G P+     +     +
Sbjct: 142 PCTVGFPFAFKEGELRRYYE 161

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
           P  R L  G G+G  +   A        G+++S +   +A+  +  L  ++ V F+  D 
Sbjct: 33  PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-----------TLMFP 215
             +   E  D+               A   + +   LKP G ++           T    
Sbjct: 93  AGYVANEKCDVAA--CVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIA 150

Query: 216 ISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
            +  V      +++         +G+  + +V        R    K    +R
Sbjct: 151 QACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEGWDRYEAAKWLTMRR 202

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 28/165 (16%), Positives = 50/165 (30%), Gaps = 26/165 (15%)

Query: 86  LTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIA 142
           ++  D      II+     G  P    L  G G+G     +      +  +  +E  +  
Sbjct: 69  ISEIDASY---IIMRC---GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDF 202
           +KKA +  S   +   V   ++D   +    + D ++D       +P       QKI   
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRSDIADF----ISDQMYDAVIADIPDPWN---HVQKIASM 175

Query: 203 LKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247
           +KP       +          P           L   G   +  V
Sbjct: 176 MKPGSVATFYL----------PNFDQSEKTVLSLSASGMHHLETV 210

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 44.1 bits (103), Expect = 7e-06
 Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 38/164 (23%)

Query: 78  WEKCWEEGLTPWDIG--------------------QPAPIIVHLHQSGA----------- 106
           W + W   L P                        +P       H               
Sbjct: 59  WLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL 118

Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
            P  + L  G G+G   +A        +G++I  + + +AE   ++  N     FL+   
Sbjct: 119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA--NAKRNGVRPRFLEGSL 176

Query: 167 FTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
               P               +  E+ AA A + ++ L P G  +
Sbjct: 177 EAALPF-----GPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 20/139 (14%), Positives = 44/139 (31%), Gaps = 5/139 (3%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
            + R L  G G G+  +A +   +  +G++ +   ++ A   +                 
Sbjct: 16  AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 75

Query: 168 TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV 227
              P + FD+I                  +++   LK DG  + +     +    P    
Sbjct: 76  LPFPDDSFDIITCRYAAHHF--SDVRKAVREVARVLKQDGRFLLVDHYAPED---PVLDE 130

Query: 228 SVSDYEEVLQPMGFQAISI 246
            V+    +  P   +  S+
Sbjct: 131 FVNHLNRLRDPSHVRESSL 149

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%)

Query: 98  IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157
           I+       L     L   CGTG     +    +    +++S   + +AE    S     
Sbjct: 27  IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKP 86

Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
            ++                     +    I+ +    + + + + LK  G  I
Sbjct: 87  RLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159
           L +         L  GCG G D++    +      G++I++++I  A   + ++     V
Sbjct: 17  LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV 76

Query: 160 SFLKADFFTWCP---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
            F   D +        E   +   ++F  A         AQ+        G    +  P 
Sbjct: 77  FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136

Query: 217 SDHV 220
            D +
Sbjct: 137 RDVI 140

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 24/136 (17%), Positives = 39/136 (28%), Gaps = 17/136 (12%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           I  P  I + L      P    L  G G+G   + ++     +  V+  E+       A+
Sbjct: 81  ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 140

Query: 148 E----------LSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQ 197
           +          LS        V F+  D       ++  L FD      + P        
Sbjct: 141 KNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDIKSLTFDAVALDMLNPH---VTLP 196

Query: 198 KIKDFLKPDGELITLM 213
                LK  G     +
Sbjct: 197 VFYPHLKHGGVCAVYV 212

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF 167
               A+  GCGTG   + +A   R V  ++ +  AI   E           V+ ++ D  
Sbjct: 33  KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92

Query: 168 -TWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
              C     D+         ++  +R    +     LKP G +I
Sbjct: 93  EALCKIPDIDIAVVGGSGGELQEILRIIKDK-----LKPGGRII 131

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL--------PNAK 157
                +  G G G  V+ +A  +  ++  G+E +DI  K AE +                
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 158 FVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
             +  + DF +      + +    +    A  PE+     ++    +K  G +++ 
Sbjct: 211 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQ-LKERFANMKEGGRIVSS 265

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 11/126 (8%)

Query: 91  IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAE 147
           +  P      +H+    P  R L  G G+G   +++     P   V+  E      + A 
Sbjct: 79  VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHAR 138

Query: 148 ELSSSLPNAKF--VSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205
              S            + +D      +EL D   D      + P         +   L  
Sbjct: 139 RNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVDRAVLDMLAPW---EVLDAVSRLLVA 192

Query: 206 DGELIT 211
            G L+ 
Sbjct: 193 GGVLMV 198

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 16/138 (11%)

Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEI----SDIAIKKAEELSSSLPNAKFV- 159
                 R L   CGTG D + +      V  ++        A+K+           K+V 
Sbjct: 53  RQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI 112

Query: 160 ---SFLKADFFTWCPTELFDLIFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELIT 211
              ++L  D           +I     F  +     +        + I   ++P G L+ 
Sbjct: 113 EEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 172

Query: 212 LMF---PISDHVGGPPYK 226
                  I      PP K
Sbjct: 173 DHRNYDYILSTGCAPPGK 190

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 24/143 (16%), Positives = 38/143 (26%), Gaps = 23/143 (16%)

Query: 108 PKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSL---------PNA 156
                +  G G G  VV  A         G EI D A          L            
Sbjct: 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275

Query: 157 KFVSFLKADFFTWCPTEL----FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212
                LK  F             D+I    F    + ++      KI    K   ++I+ 
Sbjct: 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNF--LFDEDLNKKVE-KILQTAKVGCKIIS- 331

Query: 213 MFPISDHVGGPPYKVSVSDYEEV 235
                  +    Y+++  + E +
Sbjct: 332 ----LKSLRSLTYQINFYNVENI 350

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165
              R L  G  +G  V  +A    E  +  +E S    +K  EL     N   +     D
Sbjct: 56  GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPL---LFD 112

Query: 166 FFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225
                         D  +    +           + FLK  GE++ ++   S      P 
Sbjct: 113 ASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPE 172

Query: 226 KVSVSDYEEVLQPMGFQAISIVD 248
           +  V           F+ +    
Sbjct: 173 E--VFKSVLKEMEGDFKIVKHGS 193

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 17/188 (9%)

Query: 98  IVHLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA 156
           +  L Q  AL      L    G G+   A A   + VV  ++++  +K A        + 
Sbjct: 4   LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQ 63

Query: 157 KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216
           +               E F ++                   +    LK  G+L+ +    
Sbjct: 64  QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVS--EAYRVLKKGGQLLLVDNSA 121

Query: 217 SDHVGGPPYK--------------VSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL 262
            ++     +                  SD+ ++L+  GF+   +             +++
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM 181

Query: 263 GRWKRSVR 270
                  +
Sbjct: 182 NVTTEKKQ 189

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 4/135 (2%)

Query: 101 LHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVS 160
             +       R L   CGTG   + +A     VVG  +             +      + 
Sbjct: 34  FKEDAKREVRRVLDLACGTGIPTLELAERGYEVVG--LDLHEEMLRVARRKAKERNLKIE 91

Query: 161 FLKADFFTWCPTELFD-LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219
           FL+ D         FD +   ++     + E       K+ + LKP G  I   FP   +
Sbjct: 92  FLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI-TDFPCWFY 150

Query: 220 VGGPPYKVSVSDYEE 234
            G     V      E
Sbjct: 151 GGRDGPVVWNEQKGE 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.92
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.89
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.88
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.88
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.88
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.87
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.86
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.85
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.85
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.85
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.85
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.85
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.84
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.84
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.83
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.82
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.81
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.8
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.79
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.79
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.77
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.74
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.73
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.69
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.68
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.68
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.65
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.65
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.65
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.64
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.59
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.59
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.56
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.56
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.55
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.55
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.54
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.53
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.52
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.51
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.51
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.49
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.48
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.46
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.42
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.41
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.38
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.37
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.36
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.32
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.32
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.31
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.31
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.29
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.24
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.23
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.21
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.2
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.98
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.97
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.96
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.94
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.9
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.82
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.78
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.77
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.77
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.76
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.76
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.76
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.74
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.72
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.7
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.56
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.51
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.5
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.47
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.45
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.33
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.24
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.19
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.19
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.1
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.04
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.84
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.63
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.28
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.25
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.23
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.16
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.1
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.1
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.85
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.69
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.59
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.59
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.55
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.54
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.44
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.38
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.32
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.79
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.48
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.44
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.29
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.22
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.12
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.07
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.03
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.77
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.72
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.36
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.22
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.98
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.95
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.94
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.9
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.86
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.68
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.68
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.66
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.57
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.56
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.49
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.27
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.06
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.97
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.87
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.6
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.36
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	92.26
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.23
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.16
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.15
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	91.98
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.95
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	91.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.85
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.8
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	90.47
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.46
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.33
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.2
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.88
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	89.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.6
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.42
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.38
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.02
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	88.95
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.83
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.71
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.62
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.6
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.13
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	87.58
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.53
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.23
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.2
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	86.99
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	86.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.75
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.9
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	85.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.76
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	84.67
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.35
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.28
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.94
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	82.63
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.01
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	81.88
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.3
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	80.33
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	80.22

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=177.08  Aligned_cols=175  Identities=19%  Similarity=0.299  Sum_probs=146.9

Q ss_pred             cccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024021           74 SSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        74 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~  151 (274)
                      ..+.|++.|..+..+|+...+.+.+.+++...  ..++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|++...
T Consensus         9 ~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1           9 TLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             CHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTT
T ss_pred             CHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhh
Confidence            34789999999999999999999888777543  3456899999999999999999999999999999999999998765


Q ss_pred             cCC----------------CCcceEEEEcccCC--CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          152 SLP----------------NAKFVSFLKADFFT--WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       152 ~~~----------------~~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...                ...+++++++|+.+  ....+.||+|+...++++++++.+..++..+.++|+|||.+++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1          89 LSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             CCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            421                12478999999987  345678999999999999999899999999999999999988777


Q ss_pred             ccCC-CCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          214 FPIS-DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       214 ~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      +... ....|+|+..+.+++.+++.. +|.+..++..
T Consensus       169 ~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le~~  204 (229)
T d2bzga1         169 LSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLEKV  204 (229)
T ss_dssp             EECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             cccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEEEe
Confidence            6543 345678888999999999976 7877666543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.89  E-value=6.5e-23  Score=166.24  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=119.7

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCee
Q 024021           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFD  176 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D  176 (274)
                      .++++... .++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....+. ++++|+++|..+. .++++||
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-ccccccccccccccccccccc
Confidence            33444333 4458999999999999999999999999999999999999999877654 5799999999984 5678999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~Gf~  242 (274)
                      +|++..+++|+++  ...++.++.++|+|||++++.++.....              .......++.+++.++++++||+
T Consensus        84 ~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  161 (231)
T d1vl5a_          84 IVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE  161 (231)
T ss_dssp             EEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred             cccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCE
Confidence            9999999999964  4578999999999999999977654322              11122335789999999999999


Q ss_pred             EEEEeecc
Q 024021          243 AISIVDNK  250 (274)
Q Consensus       243 ~~~~~~~~  250 (274)
                      ++++....
T Consensus       162 ~~~~~~~~  169 (231)
T d1vl5a_         162 LEELHCFH  169 (231)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEee
Confidence            98876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=7.5e-22  Score=156.39  Aligned_cols=140  Identities=15%  Similarity=0.223  Sum_probs=116.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      ..++++|||+|||+|..+..+++.|.+|+|+|+|+.+++.++++....+. +++.+...|+....++++||+|++..+++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeee
Confidence            34567999999999999999999999999999999999999999887765 46999999999877788999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++++....+++++.++|+|||++++..+.....   ..+.++.++..++.+.+  +||+++...+
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~--~~~~i~~~~e  170 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY--EGWDMLKYNE  170 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHHHT--TTSEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHHHh--CCCeEEEeee
Confidence            9998888999999999999999999877654322   22334556778888887  4788876543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=5.8e-22  Score=161.06  Aligned_cols=145  Identities=16%  Similarity=0.184  Sum_probs=119.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+. +++.++++|+.+ +.++++||+|++..++
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccccccceeeeecee
Confidence            45678999999999999999999889999999999999999999877654 569999999988 4567899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +++++  ...+++++.++|+|||++++.++.....              ........+..++..+++.+||.+..+....
T Consensus        93 ~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~  170 (234)
T d1xxla_          93 HHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN  170 (234)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEEEEee
Confidence            99864  4689999999999999999876554321              1111223478899999999999988877655


Q ss_pred             ccc
Q 024021          251 LAI  253 (274)
Q Consensus       251 ~~~  253 (274)
                      .+.
T Consensus       171 ~~~  173 (234)
T d1xxla_         171 LPI  173 (234)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.88  E-value=2.4e-22  Score=158.79  Aligned_cols=158  Identities=19%  Similarity=0.320  Sum_probs=126.4

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-----------CcceE
Q 024021           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-----------AKFVS  160 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~  160 (274)
                      +..+.+.+++..+ ..++.+|||+|||+|..+..|++.|++|+|+|+|+.+++.|+++....+.           ...++
T Consensus         4 ~~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           4 EVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             SSTHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            4456677766665 44567999999999999999999999999999999999999998865431           23468


Q ss_pred             EEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCCCCCcccCHHHHHHHHh
Q 024021          161 FLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVGGPPYKVSVSDYEEVLQ  237 (274)
Q Consensus       161 ~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  237 (274)
                      |+.+|+.++.+  ...||+|++..++++++++....+++++.++|||||.+++..+... ....++++..+.+++.+++.
T Consensus        84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~  163 (201)
T d1pjza_          84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS  163 (201)
T ss_dssp             EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC
T ss_pred             eecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhC
Confidence            88999887443  3579999999999999988889999999999999999887665543 33456777889999998886


Q ss_pred             cCCCcEEEEeeccc
Q 024021          238 PMGFQAISIVDNKL  251 (274)
Q Consensus       238 ~~Gf~~~~~~~~~~  251 (274)
                      . +|.+..+.....
T Consensus       164 ~-~~~i~~~~~~~~  176 (201)
T d1pjza_         164 G-NWEVTKVGGQDT  176 (201)
T ss_dssp             S-SEEEEEEEESSC
T ss_pred             C-CcEEEEEEEecc
Confidence            4 788766665443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=158.30  Aligned_cols=140  Identities=13%  Similarity=0.137  Sum_probs=116.5

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      +..+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+. .+++|.++|+.+. .+.++||+|++..+++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence            3479999999999999988764 44899999999999999999876543 4689999999884 4567999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      |++++....++.++.++|+|||.+++.+....+.    .....+..+.+++.++++++||++++...
T Consensus       139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            9998877889999999999999999987554432    11223335789999999999999988765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.87  E-value=9.4e-22  Score=164.24  Aligned_cols=142  Identities=17%  Similarity=0.179  Sum_probs=119.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||||||+|..+..+++ .+.+|+|+|+++.+++.|+++....++.++++|..+|+.+ +.++++||+|++..++
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            3568999999999999999987 5789999999999999999999888888899999999998 4567899999999999


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-----------CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-----------PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      +|+++  ...++.++.++|+|||++++.++...+....           .+...+.+++.++++++||..+.+.+..
T Consensus       146 ~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~  220 (282)
T d2o57a1         146 LHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP  220 (282)
T ss_dssp             GGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred             hhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEECc
Confidence            99964  4678999999999999999977654432111           1122478999999999999998887643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.2e-21  Score=160.24  Aligned_cols=151  Identities=16%  Similarity=0.136  Sum_probs=122.1

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024021           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL  174 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  174 (274)
                      .+..+.... ..++.+|||||||+|..+..+++ .+.+|+|+|+|+.+++.|+++....++.++++|+.+|+.+..++++
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~  100 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEK  100 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCc
Confidence            344444444 34568999999999999999877 5789999999999999999999988888899999999999777889


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------CCCCcccCHHHHHHHHhcCCCcE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------GGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ||+|++..+++|+++  ...++++++++|||||++++.........           .......+..++...++++||.+
T Consensus       101 fD~v~~~~~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~~  178 (245)
T d1nkva_         101 CDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDV  178 (245)
T ss_dssp             EEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCC
T ss_pred             eeEEEEEehhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHcCCEE
Confidence            999999999999964  36789999999999999999765322210           01112347889999999999998


Q ss_pred             EEEeec
Q 024021          244 ISIVDN  249 (274)
Q Consensus       244 ~~~~~~  249 (274)
                      +.....
T Consensus       179 v~~~~~  184 (245)
T d1nkva_         179 VEMVLA  184 (245)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            876554

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.86  E-value=1.3e-20  Score=154.76  Aligned_cols=145  Identities=15%  Similarity=0.092  Sum_probs=120.4

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      ..+|||||||+|.++..+++  ++.+++++|+ +++++.++++....+..++++++.+|+++..+ .+||+|++..++++
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~-~~~D~v~~~~vlh~  158 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP-RKADAIILSFVLLN  158 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-SCEEEEEEESCGGG
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc-cchhheeecccccc
Confidence            47999999999999999987  5779999998 77999999999888888899999999987544 56999999999999


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC---------------CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP---------------PYKVSVSDYEEVLQPMGFQAISIVDNKL  251 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~Gf~~~~~~~~~~  251 (274)
                      ++++....++++++++|+|||++++.+..........               ....+.+++.++++++||+++++.....
T Consensus       159 ~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~  238 (253)
T d1tw3a2         159 WPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS  238 (253)
T ss_dssp             SCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred             CCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence            9988888999999999999999999886543321111               0113789999999999999999887655


Q ss_pred             ccCC
Q 024021          252 AIGP  255 (274)
Q Consensus       252 ~~~~  255 (274)
                      +..+
T Consensus       239 p~~~  242 (253)
T d1tw3a2         239 PTIP  242 (253)
T ss_dssp             SSSS
T ss_pred             CCCC
Confidence            4443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=3.4e-20  Score=154.42  Aligned_cols=166  Identities=14%  Similarity=0.133  Sum_probs=132.8

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..+++... .++.+|||||||+|..+..+++ .|++|+|+++|+++++.++++....++.+++++...|..  .++++|
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~--~~~~~f  127 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--EFDEPV  127 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG--GCCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc--cccccc
Confidence            444555553 4568999999999999998886 688999999999999999999999888888999998875  345789


Q ss_pred             eEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------CC-----------------CC
Q 024021          176 DLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHV-------GG-----------------PP  224 (274)
Q Consensus       176 D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~-------~~-----------------~~  224 (274)
                      |.|++..+++|+++       +..+.+++++.++|+|||++++..+...+..       ..                 ..
T Consensus       128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg  207 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  207 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence            99999999999865       4678999999999999999998776543210       00                 01


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhhc
Q 024021          225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVR  270 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (274)
                      ...+..++...++.+||++..+......+     .+++..|++.+.
T Consensus       208 ~lps~~~~~~~~e~~gl~v~~~~~~~~hY-----a~TL~~W~~~f~  248 (291)
T d1kpia_         208 RLPRISQVDYYSSNAGWKVERYHRIGANY-----VPTLNAWADALQ  248 (291)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGGGH-----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHhhhcccccccceeeeccccH-----HHHHHHHHHHHH
Confidence            22478999999999999999887765544     478888887653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=7.7e-21  Score=157.92  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=131.5

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..+++.+. .++.+|||||||+|.++..+++ .|.+|+|+|+|+++++.|+++....++..++.+...|....  +++|
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~f  118 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPV  118 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccch
Confidence            455555554 4568999999999999999887 58899999999999999999999988888888888887654  4689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------------CCCCCcccCHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------------VGGPPYKVSVS  230 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------------------~~~~~~~~~~~  230 (274)
                      |.|++..+++|++......+++++.++|||||++++......+.                         -.+ ....+.+
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPg-g~lPS~~  197 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPG-GRLPSTE  197 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT-CCCCCHH
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCC-CcccchH
Confidence            99999999999988888899999999999999999865332211                         001 1224789


Q ss_pred             HHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhh
Q 024021          231 DYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSV  269 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (274)
                      ++.+.++++||+++.+......     ..+++..|++.+
T Consensus       198 ~l~~~~e~aGf~v~~~~~~~~h-----Ya~TL~~W~~~f  231 (280)
T d2fk8a1         198 MMVEHGEKAGFTVPEPLSLRPH-----YIKTLRIWGDTL  231 (280)
T ss_dssp             HHHHHHHHTTCBCCCCEECHHH-----HHHHHHHHHHHH
T ss_pred             hhhhhHHhhccccceeeecccC-----HHHHHHHHHHHH
Confidence            9999999999999888775433     346788887765

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=4.8e-21  Score=154.68  Aligned_cols=152  Identities=17%  Similarity=0.170  Sum_probs=120.9

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE  173 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  173 (274)
                      +..++.....++.+|||+|||+|..+..+++    ++.+|+|+|+|+.|++.|+++....+...++.+..+|..+.. .+
T Consensus        29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~-~~  107 (225)
T d1im8a_          29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK  107 (225)
T ss_dssp             HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC-CC
T ss_pred             HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc-cc
Confidence            3334443356778999999999999988874    678999999999999999999887766677888888887643 46


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------CC---------------
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------GG---------------  222 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~----------------~~---------------  222 (274)
                      .+|+|++..++++++.++...++++++++|+|||.+++.+.......                .+               
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALEN  187 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHH
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence            79999999999999888888999999999999999999875543220                00               


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .....+.+++.++|+++||+.+++....
T Consensus       188 ~~~~~s~~~~~~~L~~aGF~~v~~~~~~  215 (225)
T d1im8a_         188 VMRTDSIETHKVRLKNVGFSQVELWFQC  215 (225)
T ss_dssp             HCCCCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             ccCCCCHHHHHHHHHHcCCCceEEeeee
Confidence            0123478899999999999988875433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=2.9e-20  Score=154.41  Aligned_cols=165  Identities=19%  Similarity=0.193  Sum_probs=132.7

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +..+++.+. .++.+|||||||+|..+..+++ .|++|+|+++|+++++.|+++....++.+++++..+|.....  ++|
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--~~f  128 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPV  128 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCC
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--ccc
Confidence            344444443 4568999999999999998877 789999999999999999999989888899999999987553  689


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----C---------------------CCCCcccCHH
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----V---------------------GGPPYKVSVS  230 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~----~---------------------~~~~~~~~~~  230 (274)
                      |.|++..+++|+.......+++++.++|+|||++++..+.....    .                     .+ ....+..
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpg-g~lPsl~  207 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPG-GRLPSIP  207 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTT-CCCCCHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccC-CCCCChh
Confidence            99999999999977777889999999999999999866542211    0                     01 1124789


Q ss_pred             HHHHHHhcCCCcEEEEeecccccCCccchhHHHHhhhhhc
Q 024021          231 DYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVR  270 (274)
Q Consensus       231 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (274)
                      ++.++++++||.++++......+     .+++..|.+.+.
T Consensus       208 ~~~~~~e~agf~v~~~~~~~~hY-----arTl~~W~~~f~  242 (285)
T d1kpga_         208 MVQECASANGFTVTRVQSLQPHY-----AKTLDLWSAALQ  242 (285)
T ss_dssp             HHHHHHHTTTCEEEEEEECHHHH-----HHHHHHHHHHHH
T ss_pred             hHHHHHHHhchhhcccccchhhH-----HHHHHHHHHHHH
Confidence            99999999999999988765444     478888876653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=7.9e-21  Score=156.03  Aligned_cols=147  Identities=16%  Similarity=0.089  Sum_probs=117.2

Q ss_pred             HHHHhcCCC-CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCe
Q 024021           99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELF  175 (274)
Q Consensus        99 ~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  175 (274)
                      ..++..... ...+|||+|||+|..+..++.+ ..+|+++|+++.+++.|+++....   ++++|.++|+.++. +.++|
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCcc
Confidence            445554433 4479999999999999988764 448999999999999999987654   46899999998854 45789


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      |+|++.++++|+++++...+++++.++|+|||.+++.+......     ........+.+++.++++++||++++...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF  237 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence            99999999999998888899999999999999999876433211     11122335789999999999999988654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.84  E-value=7.3e-21  Score=155.63  Aligned_cols=149  Identities=18%  Similarity=0.133  Sum_probs=117.8

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  177 (274)
                      +..++.....++.+|||+|||+|..+..+++.|.+|+|+|+|+.|++.|+++....+  .+++++++|+.+....++||+
T Consensus        27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~--~~v~~~~~d~~~~~~~~~fD~  104 (246)
T d1y8ca_          27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQG--LKPRLACQDISNLNINRKFDL  104 (246)
T ss_dssp             HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECCCGGGCCCSCCEEE
T ss_pred             HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccC--ccceeeccchhhhcccccccc
Confidence            445555555667899999999999999999999999999999999999999887765  369999999998766789999


Q ss_pred             EEec-cccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCC------C-C-----------------------------
Q 024021          178 IFDY-TFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPIS------D-H-----------------------------  219 (274)
Q Consensus       178 v~~~-~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~------~-~-----------------------------  219 (274)
                      |+|. .+++++ +.+++..+++.++++|+|||.+++...+..      . .                             
T Consensus       105 i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (246)
T d1y8ca_         105 ITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFF  184 (246)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred             cceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEE
Confidence            9986 577776 456788999999999999999887432210      0 0                             


Q ss_pred             --CCC---------CCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          220 --VGG---------PPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       220 --~~~---------~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                        ..+         ....++.+++.++++++||+.+.+..
T Consensus       185 ~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~  224 (246)
T d1y8ca_         185 VRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD  224 (246)
T ss_dssp             EECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEe
Confidence              000         01124789999999999999887754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.84  E-value=2.8e-20  Score=150.12  Aligned_cols=135  Identities=17%  Similarity=0.152  Sum_probs=111.5

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      .++.+|||+|||+|.++..+++.|.+|+|+|+|+++++.|+++..     .++.++.+|+.+..++++||+|++..+++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh   93 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH   93 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccceeEe
Confidence            446799999999999999999999999999999999999998853     359999999988767789999999999999


Q ss_pred             cChhHHHHHHHHHH-hcccCCcEEEEEEccCCCC----------------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024021          187 IEPEMRAAWAQKIK-DFLKPDGELITLMFPISDH----------------------VGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       187 ~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ++++  ..++.++. ++|+|||.+++........                      ..+....++.+++.++++++||++
T Consensus        94 ~~d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i  171 (225)
T d2p7ia1          94 IDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV  171 (225)
T ss_dssp             CSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred             cCCH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence            9654  57788887 7999999999976532210                      011223468999999999999999


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      +....
T Consensus       172 ~~~~~  176 (225)
T d2p7ia1         172 TYRSG  176 (225)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88664

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=4e-20  Score=151.42  Aligned_cols=115  Identities=22%  Similarity=0.316  Sum_probs=98.1

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      .+..++... ..++.+|||+|||+|..+..+++.|.+|+|+|+|+.|++.|+++.+..+  .++++.++|+.+...+++|
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~--~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERN--LKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccccc--ccchheehhhhhccccccc
Confidence            355555444 3445799999999999999999999999999999999999999987765  3699999999997666899


Q ss_pred             eEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|++. .++++++.++...++++++++|+|||++++..
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            999986 57888887788899999999999999998743

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=2.5e-20  Score=150.04  Aligned_cols=116  Identities=24%  Similarity=0.286  Sum_probs=99.1

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCee
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFD  176 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D  176 (274)
                      +..++.....+..+|||||||+|..+..+++.+.+|+|+|+|+.+++.|+++....+  .++.++.+|+.+ ..+.++||
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCce
Confidence            344444333456899999999999999999999999999999999999999887665  457889999988 45668999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      +|++..+++|+++.+...+++++.++|+|||++++....
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999999999998778889999999999999999887643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.82  E-value=3.1e-19  Score=146.54  Aligned_cols=149  Identities=17%  Similarity=0.096  Sum_probs=119.9

Q ss_pred             HHhcCCCCC-CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024021          101 LHQSGALPK-GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus       101 ~~~~~~~~~-~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  177 (274)
                      ++...+.++ .+|||||||+|..+..+++  ++.+++++|+ |++++.+++++...+..+++.+..+|+++..+ .+||+
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~D~  150 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTADV  150 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCEEE
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccchh
Confidence            333334444 6899999999999999987  6789999997 88999999999888888899999999987554 46999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC----------------CcccCHHHHHHHHhcCCC
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP----------------PYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~Gf  241 (274)
                      |++.+++++++++....++++++++|+|||++++.++.........                ....+.+++.++++++||
T Consensus       151 v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf  230 (256)
T d1qzza2         151 VLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL  230 (256)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred             hhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCC
Confidence            9999999999988888999999999999999999876432211110                112378999999999999


Q ss_pred             cEEEEeeccc
Q 024021          242 QAISIVDNKL  251 (274)
Q Consensus       242 ~~~~~~~~~~  251 (274)
                      +++++.....
T Consensus       231 ~~~~~~~~~~  240 (256)
T d1qzza2         231 ALASERTSGS  240 (256)
T ss_dssp             EEEEEEEECC
T ss_pred             ceeEEEEeCC
Confidence            9998876443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=1.8e-19  Score=143.47  Aligned_cols=128  Identities=23%  Similarity=0.279  Sum_probs=104.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC  185 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~  185 (274)
                      .+..+|||+|||+|.++..+.    +++|+|+|+.+++.|+++        ++.++++|+.+ +.++++||+|++..+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccccc
Confidence            345689999999999988885    468999999999999875        38899999988 45668999999999999


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      |+++  ...+++++.++|+|||.+++........             .......++.+++.++|+++||+.+++..
T Consensus       103 h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         103 FVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             GSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence            9964  4678999999999999999988654321             11112236899999999999999888765

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1e-19  Score=148.50  Aligned_cols=135  Identities=19%  Similarity=0.235  Sum_probs=110.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD  176 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  176 (274)
                      .+.+.+.....++.+|||+|||+|.++..+++.|.+|+|+|+++.+++.|++++..++.  +++++.+|+.+..+.++||
T Consensus       109 l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         109 LALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHHHGGGCCEE
T ss_pred             HHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccccccccccc
Confidence            34445555567889999999999999999999999999999999999999999988875  4678899987766678999


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +|+++...+     ....+++.+.++|||||++++..+-.          ...+++.+.++.+||.+++...
T Consensus       187 ~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~----------~~~~~v~~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         187 LLVANLYAE-----LHAALAPRYREALVPGGRALLTGILK----------DRAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             EEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG----------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred             hhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecch----------hhHHHHHHHHHHCCCEEEEEEE
Confidence            999875543     34577899999999999999865322          1468899999999999887654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=148.53  Aligned_cols=179  Identities=15%  Similarity=0.088  Sum_probs=122.2

Q ss_pred             ccchhHhhhcCCCCccCCCccHH----HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHH
Q 024021           75 SGGWEKCWEEGLTPWDIGQPAPI----IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEEL  149 (274)
Q Consensus        75 ~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~  149 (274)
                      ..||+.+|......+........    +.+.+.....++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++
T Consensus        14 ~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~   93 (257)
T d2a14a1          14 RDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKW   93 (257)
T ss_dssp             HHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHH
Confidence            36777777655443222211222    2222232345567999999999999887777655 799999999999999998


Q ss_pred             hhcCCCCcc----------------------------e-EEEEcccCC-----CCCCCCeeEEEecccccccCh--hHHH
Q 024021          150 SSSLPNAKF----------------------------V-SFLKADFFT-----WCPTELFDLIFDYTFFCAIEP--EMRA  193 (274)
Q Consensus       150 ~~~~~~~~~----------------------------~-~~~~~d~~~-----~~~~~~~D~v~~~~~~~~~~~--~~~~  193 (274)
                      +........                            + .....+...     +.+.++||+|++..++++++.  +...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~  173 (257)
T d2a14a1          94 LKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYR  173 (257)
T ss_dssp             HHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHH
T ss_pred             HhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHH
Confidence            765532110                            0 112222211     345678999999999999853  4667


Q ss_pred             HHHHHHHhcccCCcEEEEEEccCCCCC-----CCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024021          194 AWAQKIKDFLKPDGELITLMFPISDHV-----GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI  253 (274)
Q Consensus       194 ~~l~~~~~~L~pgG~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  253 (274)
                      .+++++.++|||||.+++..+......     .-..+.++.+++.++++++||+++++.......
T Consensus       174 ~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~  238 (257)
T d2a14a1         174 AALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSY  238 (257)
T ss_dssp             HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             HHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence            899999999999999999876543210     011334689999999999999998886654443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.79  E-value=5.8e-19  Score=144.70  Aligned_cols=143  Identities=18%  Similarity=0.213  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++....+...++.|.++|+...  ...++||+|++..
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            45678999999999999998888654 89999999999999999988776667899999999763  3466899999999


Q ss_pred             ccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------------CCC-----CCC-----------
Q 024021          183 FFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------------DHV-----GGP-----------  223 (274)
Q Consensus       183 ~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------------------~~~-----~~~-----------  223 (274)
                      +++|+  +.+....++..+.++|+|||++++......                     ...     .+.           
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~  181 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN  181 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccccc
Confidence            99987  345678899999999999999988643210                     000     000           


Q ss_pred             ---CcccCHHHHHHHHhcCCCcEEEEee
Q 024021          224 ---PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       224 ---~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                         .+....+.+.++++++||+.+....
T Consensus       182 ~~~E~l~~~~~l~~~~~~~g~~lv~~~~  209 (252)
T d1ri5a_         182 NCIEYFVDFTRMVDGFKRLGLSLVERKG  209 (252)
T ss_dssp             SEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             cCcccccCHHHHHHHHHHcCCEEEEEec
Confidence               1123578999999999999887654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-18  Score=142.11  Aligned_cols=189  Identities=12%  Similarity=0.073  Sum_probs=127.7

Q ss_pred             HHHHhhc-ccccchhHhhhcCCCCccCC-Ccc----HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeC
Q 024021           66 LQQLMHI-ESSGGWEKCWEEGLTPWDIG-QPA----PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEI  138 (274)
Q Consensus        66 ~~~~~~~-~~~~~w~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~  138 (274)
                      +...+.+ ....||+.+|.......... ...    ..+.+.+......+.+|||+|||+|......+. ...+|+++|+
T Consensus         6 ~~~~~~~f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~   85 (263)
T d2g72a1           6 VASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDF   85 (263)
T ss_dssp             HHHHGGGCCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECS
T ss_pred             HHHHHhhcCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeC
Confidence            3444443 34468888887643321111 121    223344444566678999999999987755544 4558999999


Q ss_pred             ChHHHHHHHHHhhcCCCCc-----------------------------ceEEEEcccCCC-------CCCCCeeEEEecc
Q 024021          139 SDIAIKKAEELSSSLPNAK-----------------------------FVSFLKADFFTW-------CPTELFDLIFDYT  182 (274)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~d~~~~-------~~~~~~D~v~~~~  182 (274)
                      |+.+++.++++.......-                             .......|+...       ...++||+|++..
T Consensus        86 S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~  165 (263)
T d2g72a1          86 LEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF  165 (263)
T ss_dssp             CHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES
T ss_pred             CHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHH
Confidence            9999999998875432110                             123455676541       2235799999999


Q ss_pred             cccccCh--hHHHHHHHHHHhcccCCcEEEEEEccCCCC--CCC---CCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          183 FFCAIEP--EMRAAWAQKIKDFLKPDGELITLMFPISDH--VGG---PPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       183 ~~~~~~~--~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      +++++++  +....+++++.++|||||.+++........  ...   ..+.++.+++.++++++||++++++....+..
T Consensus       166 ~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~~  244 (263)
T d2g72a1         166 CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAH  244 (263)
T ss_dssp             CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGG
T ss_pred             HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccCc
Confidence            9999863  467889999999999999999876543321  111   12346999999999999999988776544433

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.77  E-value=2.6e-18  Score=143.00  Aligned_cols=138  Identities=18%  Similarity=0.196  Sum_probs=108.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .++.+|||+|||+|.++..+++   .+.+|+|+|+|+.+++.|+++....+  .+++|..+|+.+....++||+|++..+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELNDKYDIAICHAF  103 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--ccccccccccccccccCCceEEEEehh
Confidence            3467999999999999999887   46799999999999999999987765  369999999988655678999999999


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------CC--------------------CCCCCcccCHHHHHH
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------DH--------------------VGGPPYKVSVSDYEE  234 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~---------~~--------------------~~~~~~~~~~~~~~~  234 (274)
                      ++|+++.  ..+++++.++|||||.+++.+....         ..                    ..+... ....++..
T Consensus       104 l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~~  180 (281)
T d2gh1a1         104 LLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDG-NIGMKIPI  180 (281)
T ss_dssp             GGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCT-TGGGTHHH
T ss_pred             hhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence            9999644  5789999999999999998774210         00                    000000 01246778


Q ss_pred             HHhcCCCcEEEEeec
Q 024021          235 VLQPMGFQAISIVDN  249 (274)
Q Consensus       235 ~l~~~Gf~~~~~~~~  249 (274)
                      +|+++||+.+++...
T Consensus       181 ~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         181 YLSELGVKNIECRVS  195 (281)
T ss_dssp             HHHHTTCEEEEEEEC
T ss_pred             HHHHcCCeEEEEEEe
Confidence            899999999887543

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=4.6e-18  Score=132.92  Aligned_cols=123  Identities=23%  Similarity=0.242  Sum_probs=103.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.|++++...++.++++++++|+.+ ....+.||+|++....
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence            456789999999999999999998889999999999999999999999888899999999887 4455789999988766


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      .++     ..+++.+.+.|+|||++++......          +...+.+.++..||..
T Consensus       111 ~~~-----~~~~~~~~~~LkpgG~lvi~~~~~e----------~~~~~~~~l~~~~~~~  154 (186)
T d1l3ia_         111 GEL-----QEILRIIKDKLKPGGRIIVTAILLE----------TKFEAMECLRDLGFDV  154 (186)
T ss_dssp             TCH-----HHHHHHHHHTEEEEEEEEEEECBHH----------HHHHHHHHHHHTTCCC
T ss_pred             ccc-----hHHHHHHHHHhCcCCEEEEEeeccc----------cHHHHHHHHHHcCCCe
Confidence            543     4678999999999999988663221          4566778888888854

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=5.1e-18  Score=137.99  Aligned_cols=110  Identities=21%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL  174 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~  174 (274)
                      ..+..++.....++.+|||+|||+|..+..+++.|.+|+|+|+|+.+++.|+++..       ..++.+|+.+ ..+.++
T Consensus        30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~~~~~  102 (246)
T d2avna1          30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPFPSGA  102 (246)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCSCTTC
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc-------ccccccccccccccccc
Confidence            33445555445567899999999999999999999999999999999999998752       2356788887 455689


Q ss_pred             eeEEEec-ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDY-TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ||+|++. .+++|+++.  ..+++++.++|+|||.+++...
T Consensus       103 fD~ii~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         103 FEAVLALGDVLSYVENK--DKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEEECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeeecchhhhhhhH--HHHHHHHHhhcCcCcEEEEEEC
Confidence            9999986 578888654  5689999999999999998764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=2e-17  Score=133.08  Aligned_cols=138  Identities=17%  Similarity=0.121  Sum_probs=106.7

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~  181 (274)
                      ..++.+|||+|||+|..+..+++  ++..|+|+|+|+.+++.++++....   +++..+.+|...+  .....+|++++.
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccccccceeEEee
Confidence            34568999999999999999987  5569999999999999999987665   5688888888773  334567777766


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ..+++.  ++...++.++.+.|||||.+++..........+++ ....++..+.|+++||++++..+.
T Consensus       149 ~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~-~~~~~e~~~~L~~aGF~ive~idL  213 (230)
T d1g8sa_         149 EDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDP-KEIFKEQKEILEAGGFKIVDEVDI  213 (230)
T ss_dssp             ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCH-HHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             ccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCH-HHHHHHHHHHHHHcCCEEEEEecC
Confidence            666655  35567899999999999999988765544333332 224577888999999999887654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.9e-18  Score=136.60  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=102.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|.++..+++   ++.+|+++|.++++++.|++++...+...++++..+|+.+..+++.||.|++. 
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld-  161 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD-  161 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC-
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec-
Confidence            45678999999999999999886   56799999999999999999998876678899999999987778899999853 


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                          ++++  ..+++.+.++|||||++++.....          -..+++.+.++++||..+++.+
T Consensus       162 ----~p~p--~~~l~~~~~~LKpGG~lv~~~P~i----------~Qv~~~~~~l~~~gf~~i~~~E  211 (250)
T d1yb2a1         162 ----IPDP--WNHVQKIASMMKPGSVATFYLPNF----------DQSEKTVLSLSASGMHHLETVE  211 (250)
T ss_dssp             ----CSCG--GGSHHHHHHTEEEEEEEEEEESSH----------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred             ----CCch--HHHHHHHHHhcCCCceEEEEeCCc----------ChHHHHHHHHHHCCCceeEEEE
Confidence                2222  367899999999999998865322          1356777888889998766543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=5.1e-17  Score=127.71  Aligned_cols=107  Identities=21%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+++.+++.+++++..++.. .++++..+|+.+..++++||+|+++.++
T Consensus        50 ~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          50 VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccE
Confidence            345689999999999999999998889999999999999999998877664 3689999999887777899999999887


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++. .+....+++.+.++|+|||.+++..
T Consensus       130 ~~~-~~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         130 RAG-KEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             TTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence            754 3445788999999999999988765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-17  Score=134.58  Aligned_cols=154  Identities=18%  Similarity=0.119  Sum_probs=106.3

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCC
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCP  171 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~  171 (274)
                      +.+..+......++++|||||||+|..+..+++. +.+++++|+|+.+++.|+++....+  .++.++..|...   ..+
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~  118 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP  118 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc
Confidence            3444454444566789999999999999999885 4589999999999999999987764  457777777654   456


Q ss_pred             CCCeeEEEec-----ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc----cCHHHHHHHHhcCCCc
Q 024021          172 TELFDLIFDY-----TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK----VSVSDYEEVLQPMGFQ  242 (274)
Q Consensus       172 ~~~~D~v~~~-----~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~Gf~  242 (274)
                      .++||.|+..     ..+.++  .....+++.+.++|||||++++.............+.    ...+.+...+.++||+
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~agF~  196 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFR  196 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCC
T ss_pred             cccccceeecccccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHHHHHHHCCCe
Confidence            6789999843     333444  4567899999999999999877432211100001111    1245666777889998


Q ss_pred             EEEEeeccccc
Q 024021          243 AISIVDNKLAI  253 (274)
Q Consensus       243 ~~~~~~~~~~~  253 (274)
                      ...++......
T Consensus       197 ~~~i~~~~~~~  207 (229)
T d1zx0a1         197 RENIRTEVMAL  207 (229)
T ss_dssp             GGGEEEEEEEC
T ss_pred             eEEEEEEEecc
Confidence            76665543333

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.1e-16  Score=129.77  Aligned_cols=138  Identities=17%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF  175 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  175 (274)
                      +...+......+.+|||+|||+|..+..++.  +..+|+++|+|+.+++.|++|+...+. .+++|+.+|+++..+.++|
T Consensus        98 v~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~~f  176 (274)
T d2b3ta1          98 VEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQQF  176 (274)
T ss_dssp             HHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTCCE
T ss_pred             hhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCCce
Confidence            3344454455567999999999999998876  678999999999999999999988876 4699999999987777899


Q ss_pred             eEEEecccccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH
Q 024021          176 DLIFDYTFFCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY  232 (274)
Q Consensus       176 D~v~~~~~~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~  232 (274)
                      |+|+++.++..-.+                       .....++....++|+|||.+++.. +..          ..+.+
T Consensus       177 DlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~~----------q~~~v  245 (274)
T d2b3ta1         177 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GWQ----------QGEAV  245 (274)
T ss_dssp             EEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CSS----------CHHHH
T ss_pred             eEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-Cch----------HHHHH
Confidence            99999977642110                       224578899999999999998854 111          46789


Q ss_pred             HHHHhcCCCcEEEEe
Q 024021          233 EEVLQPMGFQAISIV  247 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~~  247 (274)
                      .++++.+||..+++.
T Consensus       246 ~~~l~~~gf~~i~~~  260 (274)
T d2b3ta1         246 RQAFILAGYHDVETC  260 (274)
T ss_dssp             HHHHHHTTCTTCCEE
T ss_pred             HHHHHHCCCCeEEEE
Confidence            999999999865543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=6.5e-17  Score=132.69  Aligned_cols=126  Identities=19%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~  182 (274)
                      ..++.+|||+|||+|.++..+++   ++.+|+++|+++++++.|++++...++.+++.+...|+....+...||.|+.  
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~--  178 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL--  178 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE--
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe--
Confidence            45678999999999999999986   5679999999999999999999998887889999999877666778999874  


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                         ++++  ...+++.+.++|||||.+++.....          -..+++.+.+++.||..+++.+
T Consensus       179 ---d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~----------~Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         179 ---DVPD--PWNYIDKCWEALKGGGRFATVCPTT----------NQVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             ---CCSC--GGGTHHHHHHHEEEEEEEEEEESSH----------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred             ---cCCC--HHHHHHHHHhhcCCCCEEEEEeCcc----------cHHHHHHHHHHHCCceeEEEEE
Confidence               3332  2468899999999999999876322          1456778888999998777654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=129.36  Aligned_cols=135  Identities=18%  Similarity=0.154  Sum_probs=100.0

Q ss_pred             CeEEEEcCCcchhHHHhhC------C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccC-------CCCCC
Q 024021          110 GRALVPGCGTGYDVVAMAS------P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFF-------TWCPT  172 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~~~d~~-------~~~~~  172 (274)
                      .+|||+|||+|..+..+++      +  +..++|+|+|+.+++.+++++.......++.+  ...++.       ...+.
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            4899999999999877654      2  33789999999999999999866543334444  333332       23456


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcC
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPM  239 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~  239 (274)
                      ++||+|++.++++|+++  ...+++.+.++|+|||.+++..+.....             .......++.+++.++|++.
T Consensus       122 ~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~  199 (280)
T d1jqea_         122 QKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL  199 (280)
T ss_dssp             CCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHHHH
T ss_pred             CceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHHHC
Confidence            78999999999999964  3679999999999999999887654321             11112235788999999999


Q ss_pred             CCcEEEE
Q 024021          240 GFQAISI  246 (274)
Q Consensus       240 Gf~~~~~  246 (274)
                      ||..+..
T Consensus       200 G~~~~~~  206 (280)
T d1jqea_         200 GLKYECY  206 (280)
T ss_dssp             TCCEEEE
T ss_pred             CCceEEE
Confidence            9986543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=4.5e-16  Score=128.33  Aligned_cols=100  Identities=28%  Similarity=0.319  Sum_probs=84.4

Q ss_pred             hcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024021          103 QSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       103 ~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~  179 (274)
                      .....++.+|||+|||+|..+..+++  ++.+++|+|+|+.+++.|+++.      ++++|.++|+.+ +.++++||+|+
T Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~  152 (268)
T d1p91a_          79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAII  152 (268)
T ss_dssp             HHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             HhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEe
Confidence            33355678999999999999999987  4679999999999999999875      468999999988 55678999999


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS  217 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  217 (274)
                      +..+++++         +++.++|||||.+++...+..
T Consensus       153 ~~~~~~~~---------~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         153 RIYAPCKA---------EELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             EESCCCCH---------HHHHHHEEEEEEEEEEEECTT
T ss_pred             ecCCHHHH---------HHHHHHhCCCcEEEEEeeCCc
Confidence            98877653         578999999999999886553

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.6e-16  Score=129.88  Aligned_cols=115  Identities=19%  Similarity=0.206  Sum_probs=88.5

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCC---cceEEEEcccCC----CC
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNA---KFVSFLKADFFT----WC  170 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~----~~  170 (274)
                      +..++..  .++.+|||+|||+|..+..|++.|.+|+|+|+|+.|++.|+++....+..   ....+...|+..    ..
T Consensus        48 l~~~l~~--~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T d1xvaa_          48 LLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP  125 (292)
T ss_dssp             HHHHHHH--TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred             HHHHhhh--cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence            4444442  34579999999999999999999999999999999999999987655432   124455555543    34


Q ss_pred             CCCCeeEEEec-ccccccCh-----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          171 PTELFDLIFDY-TFFCAIEP-----EMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       171 ~~~~~D~v~~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +.++||+|++. .+++|+++     +....+++++.++|+|||++++..+
T Consensus       126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence            45789999976 47888753     4567899999999999999988553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.64  E-value=5.3e-15  Score=119.72  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=105.2

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|||||||+|..+..+++  ++.+++.+|+ |+.++       .....++++++.+|+++..|  ..|+|++.++++++
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFASVP--QGDAMILKAVCHNW  152 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTCCC--CEEEEEEESSGGGS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccccc--cceEEEEehhhhhC
Confidence            7999999999999999987  7889999998 55432       33344789999999988655  45999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEEee
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++....+++++++.|+|||.+++.++...+....+.                  ...+.+|+.++++++||+.+++..
T Consensus       153 ~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         153 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEe
Confidence            9999999999999999999999998875433322111                  113689999999999999998864

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=4.6e-16  Score=126.90  Aligned_cols=125  Identities=16%  Similarity=0.169  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~-~~~~~~~D~v~  179 (274)
                      ..|+.+|||+|||+|.++..|++   +..+|+++|+++++++.|++++...  ....++.+..+|+.+ ..+++.||.|+
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~  173 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  173 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence            45678999999999999999987   5679999999999999999988653  345789999999987 46678999998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcEEEEe
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQAISIV  247 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gf~~~~~~  247 (274)
                      +     +++++  ..++..+.++|||||.+++......          ......+.++ ..||..+++.
T Consensus       174 l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i~----------Qv~~~~~~l~~~~~f~~i~~~  225 (264)
T d1i9ga_         174 L-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATVT----------QLSRIVEALRAKQCWTEPRAW  225 (264)
T ss_dssp             E-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSHH----------HHHHHHHHHHHHSSBCCCEEE
T ss_pred             E-----ecCCH--HHHHHHHHhccCCCCEEEEEeCccC----------hHHHHHHHHHHcCCeecceEE
Confidence            5     34433  4678999999999999988763221          3455555664 5678765543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=1.8e-15  Score=119.81  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCC---CCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT---ELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~---~~~D~v~  179 (274)
                      ..|+.+|||+|||+|..+..+++  +..+|+|+|+++.+++.|+++....   +++.++.+|...+ ...   ..+|+|+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEEEEE
Confidence            45678999999999999999887  4459999999999999999988765   4799999998873 222   3455554


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      .  .+.+.  .+...++.++.++|||||++++...........++.. ...+..+.++ +||++++...
T Consensus       131 ~--~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~-~~~~~~~~l~-~gf~i~E~i~  193 (209)
T d1nt2a_         131 Q--DIAQK--NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEE-VFKSVLKEME-GDFKIVKHGS  193 (209)
T ss_dssp             E--CCCST--THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHH-HHHHHHHHHH-TTSEEEEEEE
T ss_pred             e--cccCh--hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHH-HHHHHHHHHH-cCCEEEEEEc
Confidence            3  23332  3556789999999999999998775432221111111 1223333343 6999988665

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=3.9e-15  Score=118.32  Aligned_cols=107  Identities=22%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024021           98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT  172 (274)
Q Consensus        98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~  172 (274)
                      +..+++.. ..++.+|||+|||+|..+..+++   +..+|+++|+++++++.|+++....+. .++.++.+|..+ ....
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCGGG
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccccc
Confidence            33455554 44568999999999999998876   566999999999999999999987765 568889999877 4445


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++||+|++..+++++++        .+.+.|+|||++++..
T Consensus       143 ~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEEB
T ss_pred             cchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEEE
Confidence            68999999999988863        3567899999998854

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=9.2e-15  Score=115.06  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=99.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      ...|||||||+|..+..+++  ++..++|+|+++.++..|.++....++ .|+.++.+|+..   ..+++.+|.|++.++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence            45899999999999999987  778999999999999999999988876 579999999876   367788999998877


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ..+.....      ...+++.++++|||||.|++.+-..          .-.+.+.+.+.+.|+......
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~----------~y~~~~~~~~~~~~~~~~~~~  168 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR----------GLFEYSLKSFSEYGLLLTYVS  168 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH----------HHHHHHHHHHHHHTCEEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh----------HHHHHHHHHHHHCCCccccCC
Confidence            66543221      1478999999999999998876100          013556677777777654443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=115.75  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCC-CCCCCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~-~~~~~~~D~  177 (274)
                      ..++.+|||+|||+|+.+..+++   +..+|+++|.++++++.|++++...+.    ..++.+..+|... .....+||+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            35678999999999999887776   567999999999999999998865432    2478999999887 444568999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |++..++.++++        .+.+.|||||++++...
T Consensus       154 I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         154 IHVGAAAPVVPQ--------ALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEECSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred             hhhhcchhhcCH--------HHHhhcCCCcEEEEEEc
Confidence            999999888763        46788999999998663

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.2e-14  Score=122.09  Aligned_cols=126  Identities=15%  Similarity=0.141  Sum_probs=90.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcC----------CCCcceEEEEcccCCC---
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSL----------PNAKFVSFLKADFFTW---  169 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~~~~~~d~~~~---  169 (274)
                      ..++.+|||+|||+|.++..|++   +..+|+++|+++++++.|++++...          ...+++++..+|+...   
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            45778999999999999999987   5679999999999999999987642          3346899999999763   


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc--CCCcEEEEe
Q 024021          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP--MGFQAISIV  247 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~Gf~~~~~~  247 (274)
                      .+...||.|+..     ++.+  ..++.++.++|||||++++......          ......+.++.  .||..+++.
T Consensus       176 ~~~~~fD~V~LD-----~p~P--~~~l~~~~~~LKpGG~lv~~~P~i~----------Qv~~~~~~l~~~~~~f~~i~~~  238 (324)
T d2b25a1         176 IKSLTFDAVALD-----MLNP--HVTLPVFYPHLKHGGVCAVYVVNIT----------QVIELLDGIRTCELALSCEKIS  238 (324)
T ss_dssp             -----EEEEEEC-----SSST--TTTHHHHGGGEEEEEEEEEEESSHH----------HHHHHHHHHHHHTCCEEEEEEE
T ss_pred             cCCCCcceEeec-----CcCH--HHHHHHHHHhccCCCEEEEEeCCHH----------HHHHHHHHHHHcCCCceeeEEE
Confidence            345679999852     3222  3578999999999999988662221          23344444553  357666554


Q ss_pred             e
Q 024021          248 D  248 (274)
Q Consensus       248 ~  248 (274)
                      +
T Consensus       239 E  239 (324)
T d2b25a1         239 E  239 (324)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.55  E-value=2.4e-14  Score=115.89  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=104.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|||||||+|..+..+++  ++.+++..|+ |+.++       ..+..++++++.+|+++..+  .+|++++..++|++
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLHdw  151 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTSIP--NADAVLLKYILHNW  151 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccCCC--CCcEEEEEeecccC
Confidence            6899999999999999987  7889999998 55443       33345789999999987543  57999999999999


Q ss_pred             ChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCC-----------------CcccCHHHHHHHHhcCCCcEEEEe
Q 024021          188 EPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGP-----------------PYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pg---G~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      +++....+|+++++.|+||   |++++.+....+....+                 ....+.+++.++++++||+.+++.
T Consensus       152 ~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~  231 (244)
T d1fp2a2         152 TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS  231 (244)
T ss_dssp             CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred             ChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence            9999999999999999998   77888775443321110                 112378999999999999999986


Q ss_pred             ec
Q 024021          248 DN  249 (274)
Q Consensus       248 ~~  249 (274)
                      ..
T Consensus       232 ~~  233 (244)
T d1fp2a2         232 PL  233 (244)
T ss_dssp             EE
T ss_pred             EC
Confidence            53

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=6e-14  Score=112.04  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v  178 (274)
                      ..|+.+|||+|||+|..+..+++   +..+|+++|+++.+++.++.+....   .++..+..|...+    .....+|+|
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccceEEE
Confidence            34678999999999999999987   5679999999999999999998765   4577888887652    234678888


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++..  .+.  +....++..+.+.|+|||++++............+.. -..++.+++ +.||++++...
T Consensus       148 ~~d~--~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~-v~~~v~~l~-~~gf~iie~i~  211 (227)
T d1g8aa_         148 FEDV--AQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ-VFREVEREL-SEYFEVIERLN  211 (227)
T ss_dssp             EECC--CST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH-HHHHHHHHH-HTTSEEEEEEE
T ss_pred             EEEc--ccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHH-HHHHHHHHH-HcCCEEEEEEc
Confidence            7532  222  4556789999999999999998876543322221111 123344444 56999987655

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.54  E-value=1.6e-14  Score=115.13  Aligned_cols=102  Identities=20%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             HHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEE
Q 024021          101 LHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLI  178 (274)
Q Consensus       101 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v  178 (274)
                      +++.+ ..++.+|||||||+|+.+..+++.+.+|+++|+++++++.|+++....   .++.++.+|... ....++||.|
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pfD~I  138 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPYDRV  138 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhHHHH
Confidence            44444 445689999999999999999988889999999999999999987654   589999999877 4445689999


Q ss_pred             EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++...+.++++        .+.+.|+|||++++..
T Consensus       139 iv~~a~~~ip~--------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         139 VVWATAPTLLC--------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             HhhcchhhhhH--------HHHHhcCCCCEEEEEE
Confidence            99988888763        4667899999998854

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=4.2e-14  Score=115.40  Aligned_cols=132  Identities=12%  Similarity=0.024  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|++|.+++.+++++..+++.++++++++|..+..+.+.||.|++....
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~  184 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV  184 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCC
Confidence            4567899999999999999988755 599999999999999999999999988999999999998777889999976443


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      ..      ..+++.+.+.|++||++.+..+.......    ....+.+.++.+..||.+..+.
T Consensus       185 ~~------~~~l~~a~~~l~~gG~lh~~~~~~~~~~~----~~~~e~~~~~~~~~g~~v~~~~  237 (260)
T d2frna1         185 RT------HEFIPKALSIAKDGAIIHYHNTVPEKLMP----REPFETFKRITKEYGYDVEKLN  237 (260)
T ss_dssp             SG------GGGHHHHHHHEEEEEEEEEEEEEEGGGTT----TTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ch------HHHHHHHHhhcCCCCEEEEEeccccccch----hhHHHHHHHHHHHcCCceEEEE
Confidence            22      24667788899999998765543322111    1135677888889999876543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.2e-14  Score=121.49  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.+++.+++.|+ +|+++|.++ ++..|++....++..++++++.+|+.+. .+.++||+|++..+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            3578999999999999999999886 899999986 6788998888888888999999999984 566899999998777


Q ss_pred             cccCh-hHHHHHHHHHHhcccCCcEEE
Q 024021          185 CAIEP-EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       185 ~~~~~-~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      +.+.. .....++..+.++|||||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            66543 456678888999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.5e-14  Score=120.47  Aligned_cols=102  Identities=23%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024021          108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC  185 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~  185 (274)
                      ++.+|||+|||+|.+++.+++.|+ +|+++|.++. ...+++....+++.++++++.+|+.+. .+.++||+|++..+.+
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            578999999999999999999886 7999999975 567777777777888999999999984 4567899999987776


Q ss_pred             ccCh-hHHHHHHHHHHhcccCCcEEE
Q 024021          186 AIEP-EMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       186 ~~~~-~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      .+.. .....++..+.++|+|||.++
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            6543 356788999999999999987

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=5.2e-14  Score=118.72  Aligned_cols=133  Identities=17%  Similarity=0.068  Sum_probs=102.0

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----C
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----C  170 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~  170 (274)
                      ....++.....++.+|||+|||+|.++..++..|+ +|+++|+++.+++.+++++..+++.++++++.+|+++.     .
T Consensus       134 ~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         134 ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             HHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             hHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh
Confidence            34445554455678999999999999999988776 89999999999999999999999888999999998762     2


Q ss_pred             CCCCeeEEEecccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024021          171 PTELFDLIFDYTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP  238 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (274)
                      ...+||+|++..+......       .....++..+.++|+|||++++.+.+.         .++.+++.+++.+
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~---------~~~~~~f~~~v~~  279 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ---------HVDLQMFKDMIIA  279 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT---------TSCHHHHHHHHHH
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc---------cCCHHHHHHHHHH
Confidence            3568999998765433222       123567888899999999999887443         2356666555443

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.1e-14  Score=116.73  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF  184 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~  184 (274)
                      .++.+|||+|||+|.+++.+++.|+ +|+++|.++.+. .+++....++..++++++.+|+.+. .+.++||+|++..+.
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            4678999999999999999999886 899999999876 4566666666778899999999984 556799999998776


Q ss_pred             cccCh-hHHHHHHHHHHhcccCCcEEEE
Q 024021          185 CAIEP-EMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       185 ~~~~~-~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      +++.. .....++....++|+|||+++-
T Consensus       113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         113 YFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eecccccccHHHHHHHHhcCCCCcEEec
Confidence            66543 4567788888999999999873

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.49  E-value=2e-13  Score=110.48  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=103.3

Q ss_pred             CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      .+|||||||+|.++..+++  ++.+++++|+.+ .+       +.....+++.+..+|+++..|.  .|+++..++++.+
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P~--ad~~~l~~vlh~~  152 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIPK--ADAVFMKWICHDW  152 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCCC--CSCEECSSSSTTS
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hh-------hhcccCCceEEecccccccCCC--cceEEEEEEeecC
Confidence            6899999999999999988  788999999944 32       2333347899999999886553  5888999999999


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCC-------------------CcccCHHHHHHHHhcCCCcEEEEee
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGP-------------------PYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      +++....+++++++.|+|||.+++.+....+....+                   ....+.+++.++++++||+.+++..
T Consensus       153 ~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~  232 (243)
T d1kyza2         153 SDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHC  232 (243)
T ss_dssp             CHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEE
Confidence            999999999999999999999999876433221111                   1123689999999999999998865


Q ss_pred             c
Q 024021          249 N  249 (274)
Q Consensus       249 ~  249 (274)
                      .
T Consensus       233 ~  233 (243)
T d1kyza2         233 N  233 (243)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.48  E-value=2.3e-13  Score=106.89  Aligned_cols=128  Identities=14%  Similarity=0.070  Sum_probs=96.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF  183 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~~  183 (274)
                      ...|||||||+|..+..+++  +...++|+|+++.++..|..+....++ .|+.++.+|+..   ..+..++|.|++..+
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence            45899999999999999987  688999999999999999998877765 479999999876   356778999987665


Q ss_pred             ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024021          184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV  247 (274)
Q Consensus       184 ~~~~~~~~------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  247 (274)
                      -.+.-...      ...+++.+.++|+|||.+++.+-..       .   -.+++.+.+...++......
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~-------~---Y~~~~le~~~~~~~~~~~~~  170 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR-------G---LFEYSLVSFSQYGMKLNGVW  170 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH-------H---HHHHHHHHHHHHTCEEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCc-------c---HHHHHHHHHHHCCccccccc
Confidence            43321111      1578999999999999998865100       0   12345566667777655443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.47  E-value=1.2e-13  Score=103.73  Aligned_cols=104  Identities=19%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~  183 (274)
                      ..+.+|||+|||+|.++..++.+|+ +|+++|.++.+++.+++++...+..++++++.+|+.+.  ...++||+|++..+
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            4678999999999999998888776 99999999999999999999988888899999999772  34578999998766


Q ss_pred             ccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024021          184 FCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~  213 (274)
                      +..   ......++.+.  ++|+|||.+++..
T Consensus        93 y~~---~~~~~~l~~i~~~~~L~~~g~iiiE~  121 (152)
T d2esra1          93 YAK---ETIVATIEALAAKNLLSEQVMVVCET  121 (152)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             hcc---chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence            542   33445566664  5699999988754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=1.5e-13  Score=108.59  Aligned_cols=110  Identities=20%  Similarity=0.184  Sum_probs=89.4

Q ss_pred             cHHH-HHHHhcC-CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC
Q 024021           95 APII-VHLHQSG-ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC  170 (274)
Q Consensus        95 ~~~~-~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~  170 (274)
                      .+.+ ..+++.+ ..++.+|||||||+|+.+..+++ .+.+|+++|.++..++.|++++...+. .++.++.+|... ..
T Consensus        63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP  141 (215)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG
T ss_pred             hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc
Confidence            4443 3344443 45568999999999999998887 467899999999999999999988765 579999999988 55


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...+||.|++......+|.        .+.+.|+|||++++..
T Consensus       142 ~~~pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             ccCcceeEEeecccccCCH--------HHHHhcCCCCEEEEEE
Confidence            5678999999999888763        3667899999998865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.42  E-value=1.9e-13  Score=114.77  Aligned_cols=131  Identities=21%  Similarity=0.070  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~  181 (274)
                      .++.+|||++||+|.++..++..+.+|+++|+|+.+++.|++++..+++ .+++++.+|.++.     ...++||+|++.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            3578999999999999999887667999999999999999999999887 4699999998762     234689999987


Q ss_pred             ccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH----HhcCCCcEEEEe
Q 024021          182 TFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV----LQPMGFQAISIV  247 (274)
Q Consensus       182 ~~~~~~~~-------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~Gf~~~~~~  247 (274)
                      ........       .....++..+.++|+|||.+++.+.+.         .++.+++.++    +..+|-+...+.
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~---------~~~~~~f~~~v~~a~~~a~~~~~~~~  290 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH---------HMTEPLFYAMVAEAAQDAHRLLRVVE  290 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT---------TSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------ccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            65332211       223567889999999999998877543         2355555554    456675554443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=1.9e-13  Score=104.66  Aligned_cols=106  Identities=18%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT  182 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~~  182 (274)
                      ...+.+|||+|||+|.++..++..|++++++|.++.+++.+++++...+...++....+|...   ....++||+|++..
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            345789999999999999998889999999999999999999999888776666666666532   23456899999987


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++..=.......+++  ..+|+|||++++..
T Consensus       119 PY~~~~~~~l~~l~~--~~ll~~~g~ivie~  147 (171)
T d1ws6a1         119 PYAMDLAALFGELLA--SGLVEAGGLYVLQH  147 (171)
T ss_dssp             CTTSCTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred             ccccCHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence            765411122222322  35799999887754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.2e-12  Score=103.54  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCeeEEE
Q 024021          109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFDLIF  179 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~D~v~  179 (274)
                      ..++||+|||+|..+..++.  ++++++|+|+++++++.|++++..+++.+++.+...+....       ...++||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            36999999999999998887  68899999999999999999999999989999988765542       1245799999


Q ss_pred             ecccccccChh---------------------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc
Q 024021          180 DYTFFCAIEPE---------------------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK  226 (274)
Q Consensus       180 ~~~~~~~~~~~---------------------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~  226 (274)
                      |+.++..-...                                 ....++++....++..|++.......          
T Consensus       142 sNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~----------  211 (250)
T d2h00a1         142 CNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKK----------  211 (250)
T ss_dssp             ECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESST----------
T ss_pred             ecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecch----------
Confidence            99988642110                                 12345566667788888776544211          


Q ss_pred             cCHHHHHHHHhcCCCcEEEEee
Q 024021          227 VSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       227 ~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      -+.+++.+.+++.|+..+.+.+
T Consensus       212 ~~l~~i~~~L~~~g~~~i~~ie  233 (250)
T d2h00a1         212 CSLAPLKEELRIQGVPKVTYTE  233 (250)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEE
T ss_pred             hhHHHHHHHHHHcCCCeEEEEE
Confidence            1578899999999998766554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=5.4e-13  Score=106.16  Aligned_cols=100  Identities=17%  Similarity=0.230  Sum_probs=80.4

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC----C----CCeEEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCC-CCCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS----P----ERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFT-WCPT  172 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~----~----~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~-~~~~  172 (274)
                      ..++.+|||||||+|+.+..+++    .    +.+|+++|.++++++.|+++......    ..++.+..+|..+ ..+.
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            34678999999999999987765    2    34899999999999999987643211    1479999999987 4455


Q ss_pred             CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+||.|++...+..+|.        .+.+.|+|||++++..
T Consensus       158 ~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         158 APYNAIHVGAAAPDTPT--------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             CSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             cceeeEEEEeechhchH--------HHHHhcCCCcEEEEEE
Confidence            68999999999888763        4678999999998865

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=110.18  Aligned_cols=116  Identities=16%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcC-------C-CCcceEEEE
Q 024021           95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSL-------P-NAKFVSFLK  163 (274)
Q Consensus        95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~-------~-~~~~~~~~~  163 (274)
                      ...+.++++.... ++.+|||+|||+|..+..+++ .+ .+++|+|+++.+++.|++.....       + ...+++|++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            4556667776654 458999999999999998876 44 48999999999999998865431       1 124699999


Q ss_pred             cccCCCCC-CC--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          164 ADFFTWCP-TE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       164 ~d~~~~~~-~~--~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+.+... ..  .+|+|+++... +.  +.....+.++.+.|||||++++..
T Consensus       217 gd~~~~~~~~~~~~advi~~~~~~-f~--~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEECCTT-TC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             CcccccccccccCcceEEEEccee-cc--hHHHHHHHHHHHhCCCCcEEEEec
Confidence            99987321 11  35788876543 33  455678899999999999998754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.37  E-value=3e-12  Score=107.13  Aligned_cols=134  Identities=12%  Similarity=0.026  Sum_probs=101.2

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-----~~~~~D~v  178 (274)
                      ..++.+|||++||+|.++..++..|+ .|+++|+++.+++.++++...+++. .+++++.+|+++..     ..++||+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            34578999999999999998888777 7999999999999999999888874 57999999998732     34689999


Q ss_pred             Eecccccc-----cCh--hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEe
Q 024021          179 FDYTFFCA-----IEP--EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIV  247 (274)
Q Consensus       179 ~~~~~~~~-----~~~--~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~Gf~~~~~~  247 (274)
                      ++..+-..     ...  .....++..+.++|+|||++++.+.+..         ++.+++    .+.+..+|..+..+.
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~---------~~~~~f~~~v~~a~~~~~~~~~~~~  292 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN---------MTVSQFKKQIEKGFGKQKHTYLDLQ  292 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT---------SCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CCHHHHHHHHHHHHHHcCCeEEEec
Confidence            98754211     110  2345788999999999999999775432         244444    445566677776665


Q ss_pred             e
Q 024021          248 D  248 (274)
Q Consensus       248 ~  248 (274)
                      .
T Consensus       293 ~  293 (317)
T d2b78a2         293 Q  293 (317)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.36  E-value=1.7e-12  Score=107.48  Aligned_cols=107  Identities=15%  Similarity=0.047  Sum_probs=85.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC-----CCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC-----PTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~-----~~~~~D~v~~  180 (274)
                      .++.+|||++||+|.++..++..|++|++||.|+.+++.|++|+..+++.+ +++|+.+|+++..     ..++||+|++
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            346799999999999999999999999999999999999999998877654 6999999998732     3468999998


Q ss_pred             ccccccc-C-------hhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          181 YTFFCAI-E-------PEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~-~-------~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ...-..- .       ......++..+..+|+|||.+++.+
T Consensus       211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            7552111 0       1344567788889999999766554

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=1.9e-11  Score=95.67  Aligned_cols=127  Identities=12%  Similarity=0.057  Sum_probs=89.6

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF  184 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  184 (274)
                      +..+.+|||+|||+|.++..++..|+ +|+|+|+++.+++.+++++...+  .+.+++.+|..+.  .++||+|+++.++
T Consensus        44 dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~~--~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          44 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSEF--NSRVDIVIMNPPF  119 (201)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGGC--CCCCSEEEECCCC
T ss_pred             CCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhhh--CCcCcEEEEcCcc
Confidence            56788999999999999998888775 89999999999999999988765  4688999998765  4679999999887


Q ss_pred             cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      .......-..++..   .+.+++.++.......         .....+..+....|+.+.....
T Consensus       120 ~~~~~~~d~~~l~~---~~~~~~~v~~ih~~~~---------~~~~~i~~~~~~~g~~i~~~~~  171 (201)
T d1wy7a1         120 GSQRKHADRPFLLK---AFEISDVVYSIHLAKP---------EVRRFIEKFSWEHGFVVTHRLT  171 (201)
T ss_dssp             SSSSTTTTHHHHHH---HHHHCSEEEEEEECCH---------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccccccccHHHHHH---HHhhcccchhcccchH---------HHHHHHHHHHhhcCceEEEEEE
Confidence            65422111123333   3334555444332110         1234466777888988766544

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.32  E-value=5e-12  Score=98.18  Aligned_cols=74  Identities=20%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          105 GALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      .+..+++|||+|||+|.++..++..|+ +|+++|+++.+++.|+++.      .+++++.+|+.+..  ++||+|+++.+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~--~~fD~Vi~NPP  116 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS--GKYDTWIMNPP  116 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC--CCEEEEEECCC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC--CcceEEEeCcc
Confidence            467789999999999999988888775 7999999999999999987      45889999997643  68999999988


Q ss_pred             ccc
Q 024021          184 FCA  186 (274)
Q Consensus       184 ~~~  186 (274)
                      +..
T Consensus       117 fg~  119 (197)
T d1ne2a_         117 FGS  119 (197)
T ss_dssp             C--
T ss_pred             cch
Confidence            754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.31  E-value=5.4e-12  Score=98.26  Aligned_cols=105  Identities=21%  Similarity=0.285  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCcchhHHH----hhC----C--CCeEEEEeCChHHHHHHHHHhhcC------------------CC----
Q 024021          108 PKGRALVPGCGTGYDVVA----MAS----P--ERYVVGLEISDIAIKKAEELSSSL------------------PN----  155 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~----l~~----~--~~~v~~vD~~~~~~~~a~~~~~~~------------------~~----  155 (274)
                      ++.+|+++|||+|.-...    +.+    .  ..+++|+|+++.+++.|+...-..                  ..    
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            346999999999985432    222    1  237999999999999997532111                  00    


Q ss_pred             --------CcceEEEEcccCC--CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          156 --------AKFVSFLKADFFT--WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       156 --------~~~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                              ...+.+...+...  ..+.++||+|+|.+++.+++++....+++.+++.|+|||++++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                    0124555555554  23457899999999999999999999999999999999998874

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-11  Score=97.73  Aligned_cols=103  Identities=20%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCee
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~D  176 (274)
                      ..+++|||+|||+|+.+.++++   .+.+++.+|.+++..+.|++++...+..++++++.+|..+.       ...++||
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            4568999999999999999987   46799999999999999999999999889999999998662       2356899


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..+-     .+....+++.+.+.|+|||.+++-..
T Consensus       138 ~ifiD~d-----k~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         138 VAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEeCC-----HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            9996432     23445778899999999999998553

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=7.8e-12  Score=101.89  Aligned_cols=122  Identities=11%  Similarity=0.106  Sum_probs=93.3

Q ss_pred             CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024021          109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC  185 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~  185 (274)
                      ..+++|+|||+|..+..+++ +..+|+++|+|+.+++.|++|+..++..+++.+..+|+.+..+  .++||+|+++.++-
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV  190 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence            46899999999999988876 7789999999999999999999999888889999999988443  36899999997753


Q ss_pred             cc----Ch-----hH---------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          186 AI----EP-----EM---------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       186 ~~----~~-----~~---------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      .-    +.     +.         +..+-+-+.++|+|||.+++.. +..          ..+.+.+++++.||
T Consensus       191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei-g~~----------Q~~~v~~l~~~~g~  253 (271)
T d1nv8a_         191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI-GED----------QVEELKKIVSDTVF  253 (271)
T ss_dssp             CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC-CTT----------CHHHHTTTSTTCEE
T ss_pred             CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE-CHH----------HHHHHHHHHHhCCE
Confidence            21    10     00         1112223567899999877755 211          46788888988887

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.27  E-value=6.9e-12  Score=96.65  Aligned_cols=104  Identities=16%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      ..+.+|||++||+|.++..++..|+ .|+++|.++.+++.+++++...+..++++++.+|+.+.     ....+||+|++
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            4678999999999999999999888 79999999999999999998777667899999998762     23458999999


Q ss_pred             cccccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~~~~~~  213 (274)
                      ..++..-   .....++.+.  .+|+++|++++..
T Consensus       120 DPPY~~~---~~~~~l~~i~~~~~L~~~giIi~E~  151 (182)
T d2fhpa1         120 DPPYAKQ---EIVSQLEKMLERQLLTNEAVIVCET  151 (182)
T ss_dssp             CCCGGGC---CHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhhhhh---HHHHHHHHHHHCCCCCCCEEEEEEc
Confidence            8876532   2345667665  4699999887654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=1.5e-11  Score=105.55  Aligned_cols=116  Identities=23%  Similarity=0.135  Sum_probs=82.0

Q ss_pred             cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC-------C-CcceEE-E
Q 024021           95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP-------N-AKFVSF-L  162 (274)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-------~-~~~~~~-~  162 (274)
                      ...+.++++... .++.++||+|||+|..+..++.  .+.+++|+|+++.+++.|+++....+       . ...+.+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            445777777765 4558999999999999999887  34589999999999999998775421       1 112333 3


Q ss_pred             EcccCCCC----CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       163 ~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      .+++....    .-..+|+|+++... +.  +.....+.++.+.|||||+|++..
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~~-f~--~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhccccccccccceEEEEeccc-Cc--hHHHHHHHHHHHhcCCCcEEEEec
Confidence            34444311    11357888876543 22  566788999999999999998753

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=1.5e-11  Score=97.18  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----
Q 024021           97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----  169 (274)
Q Consensus        97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----  169 (274)
                      .+..++.  ...+.+|||+|||+|..+..+++   .+.+++++|.+++.++.|++++...++.++++++.+|..+.    
T Consensus        47 lL~~lv~--~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          47 IMDAVIR--EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             HHHHHHH--HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGH
T ss_pred             HHHHHHH--hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccch
Confidence            3444444  23468999999999999999987   46799999999999999999999888888999999998762    


Q ss_pred             ---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          170 ---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       170 ---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                         ...++||+|+..+.-...   .....+....++|+|||++++
T Consensus       125 ~~~~~~~~~D~ifiD~~~~~~---~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDHWKDRY---LPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHSCCCCEEEEEECSCGGGH---HHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhcccccccceeeeccccccc---ccHHHHHHHhCccCCCcEEEE
Confidence               234679999975432211   122346677789999998766

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=4.9e-11  Score=92.32  Aligned_cols=120  Identities=19%  Similarity=0.239  Sum_probs=91.2

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--  168 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--  168 (274)
                      .....+..++.  ..++..+||++||+|..+..+++  ++.+|+|+|.++++++.|+++....+  .++.++.+++.+  
T Consensus        10 Vll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~   85 (192)
T d1m6ya2          10 VMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREAD   85 (192)
T ss_dssp             TTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHH
T ss_pred             hHHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHH
Confidence            33344444443  56678999999999999988877  67899999999999999999987754  679999999876  


Q ss_pred             ----CCCCCCeeEEEecccccc--c-----ChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          169 ----WCPTELFDLIFDYTFFCA--I-----EPEMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       169 ----~~~~~~~D~v~~~~~~~~--~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                          ....++||.|+....+..  +     .-......+..+.++|+|||.+++..+..
T Consensus        86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence                233478999986543321  1     11345678899999999999999888543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=3.3e-11  Score=92.89  Aligned_cols=103  Identities=10%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~  183 (274)
                      ..+.+|||++||+|.+++.++.+|+ +|+.||.++.+++.+++++...+. .++.++..|+.+.  ....+||+|++..+
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPP  120 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP  120 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCc
Confidence            4568999999999999999888887 899999999999999999887654 5689999998872  34568999999888


Q ss_pred             ccccChhHHHHHHHHHHh--cccCCcEEEEEE
Q 024021          184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~  213 (274)
                      +..-   .....+..+.+  +|+++|.+++..
T Consensus       121 Y~~~---~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         121 FRRG---LLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             SSTT---THHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cccc---hHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            6642   23455666654  699999988865

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.20  E-value=3.1e-11  Score=95.90  Aligned_cols=102  Identities=14%  Similarity=0.187  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--------CCCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------PTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~  175 (274)
                      ..+.+|||+|+++|+.+..+++   .+.+++.+|.+++..+.|++++...+..++++++.+|..+..        ..++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            4568999999999999999986   467999999999999999999999998899999999997621        14579


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|+...     +......+++.+.++|+|||.+++-.
T Consensus       138 D~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         138 DFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             SEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             eEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence            9999643     22345678899999999999998854

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=7.1e-09  Score=87.97  Aligned_cols=141  Identities=18%  Similarity=0.176  Sum_probs=101.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY  181 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~  181 (274)
                      .++.+|||+-||+|.++..|++.+.+|+|+|.++.+++.|+++...++. .+++|+.+|..+..     ....+|+|+..
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            3457999999999999999999999999999999999999999988876 47999999987732     23569999965


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK  261 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~  261 (274)
                      ..=..+     ...+..+.+ ++|.-++++.+.+.           +...=...|.+.||++.++...+. ++.-...|.
T Consensus       290 PPR~G~-----~~~~~~l~~-~~~~~ivYVSCnp~-----------TlaRDl~~l~~~gy~l~~i~~~D~-FP~T~HvE~  351 (358)
T d1uwva2         290 PARAGA-----AGVMQQIIK-LEPIRIVYVSCNPA-----------TLARDSEALLKAGYTIARLAMLDM-FPHTGHLES  351 (358)
T ss_dssp             CCTTCC-----HHHHHHHHH-HCCSEEEEEESCHH-----------HHHHHHHHHHHTTCEEEEEEEECC-STTSSCCEE
T ss_pred             CCCccH-----HHHHHHHHH-cCCCEEEEEeCCHH-----------HHHHHHHHHHHCCCeEeEEEEEec-CCCCccEEE
Confidence            443333     235566665 46777888877322           333333455567999998887543 333334555


Q ss_pred             HHHhh
Q 024021          262 LGRWK  266 (274)
Q Consensus       262 ~~~~~  266 (274)
                      +.++.
T Consensus       352 v~~l~  356 (358)
T d1uwva2         352 MVLFS  356 (358)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.97  E-value=2.5e-09  Score=89.81  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~  179 (274)
                      .++.+|||.|||+|.++..+.+       ...+++|+|+++.++..|+.+....+  ....+..+|.....+..+||+|+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~fD~vi  193 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR--QKMTLLHQDGLANLLVDPVDVVI  193 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT--CCCEEEESCTTSCCCCCCEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh--hhhhhhccccccccccccccccc
Confidence            3457999999999999987753       23379999999999999998876654  35778888887777778999999


Q ss_pred             ecccccccChhH----------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          180 DYTFFCAIEPEM----------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       180 ~~~~~~~~~~~~----------------~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      ++.++.......                ...++..+.+.|+|||++.++.....-.      .-..+.+++.+.+. +.+
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~------~~~~~~lR~~L~~~-~~i  266 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG------TSDFAKVDKFIKKN-GHI  266 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG------STTHHHHHHHHHHH-EEE
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCcccc------CchhHHHHHHHHhC-CcE
Confidence            999885432211                2346899999999999987766433111      11456677776665 344


Q ss_pred             EEEee
Q 024021          244 ISIVD  248 (274)
Q Consensus       244 ~~~~~  248 (274)
                      ..+..
T Consensus       267 ~~ii~  271 (328)
T d2f8la1         267 EGIIK  271 (328)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=1.3e-09  Score=83.68  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCC----CCCCCCeeEEEe
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFT----WCPTELFDLIFD  180 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~----~~~~~~~D~v~~  180 (274)
                      ..+.+|||+.||||.++..++.+|+ .|+.||.++.++...+++++..+..+ ...+...|..+    .....+||+|++
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            3567999999999999999999988 89999999999999999998776533 46666666544    223457999999


Q ss_pred             cccccccChhHHHHHHHHHHh--cccCCcEEEEEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKD--FLKPDGELITLM  213 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~--~L~pgG~~~~~~  213 (274)
                      ..++..   ......++.+..  +|+++|++++..
T Consensus       122 DPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         122 DPPFHF---NLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             chhHhh---hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            888764   234556676654  799999888855

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=2.6e-09  Score=87.21  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEEEEcccCCC-CCCCCe
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKADFFTW-CPTELF  175 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~~-~~~~~~  175 (274)
                      ..+.+||-+|+|.|..+..+.+ ...+|+++|+++.+++.|++..+...         ..++++++.+|.... ...++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            4568999999999999998777 44589999999999999998765332         247899999999762 234689


Q ss_pred             eEEEecccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024021          176 DLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |+|+....-..-+...  ..++++.+.+.|+|||++++..
T Consensus       151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            9999754322111111  2578999999999999988765

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.6e-08  Score=78.60  Aligned_cols=129  Identities=14%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             CCCCCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024021          106 ALPKGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  183 (274)
                      ..++.+|+|+|||.|.-+..++  .+..+++.+|.+..-+...++.....++ .+++++...+.+.....+||+|++..+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhccccccceehhhhh
Confidence            3456799999999999987765  4888999999999999999998887776 479999999988777778999998877


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG  254 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~  254 (274)
                      -.      ...+++-....++++|.+++.-.        ..   ..+|+..+  ..+|....+.....+..
T Consensus       142 ~~------~~~ll~~~~~~l~~~g~~~~~KG--------~~---~~eEl~~~--~~~~~~~~~~~~~~p~~  193 (207)
T d1jsxa_         142 AS------LNDMVSWCHHLPGEQGRFYALKG--------QM---PEDEIALL--PEEYQVESVVKLQVPAL  193 (207)
T ss_dssp             SS------HHHHHHHHTTSEEEEEEEEEEES--------SC---CHHHHHTS--CTTEEEEEEEEEECC--
T ss_pred             cC------HHHHHHHHHHhcCCCcEEEEECC--------CC---HHHHHHhh--hcCCEEEEEEEecCCCC
Confidence            33      24677888999999999988762        11   34555332  34787766666554433

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=5.9e-09  Score=86.46  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC----CCCcceEEEEcccCCC--CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL----PNAKFVSFLKADFFTW--CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~--~~~~~~D~v  178 (274)
                      ..+++||.+|+|.|..+..+++  +..+|+++|+++++++.|++.++..    ...++++++.+|..+.  ...++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4468999999999999998876  3559999999999999999987431    1246899999999882  334689999


Q ss_pred             Eeccc--ccc-cChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          179 FDYTF--FCA-IEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       179 ~~~~~--~~~-~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++...  +.. .+..  ...++++.+.+.|+|||++++..
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            96432  211 1111  12578899999999999988754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=3.3e-08  Score=75.31  Aligned_cols=125  Identities=16%  Similarity=0.232  Sum_probs=95.0

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLIF  179 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D~v~  179 (274)
                      ..++..++|+.+|.|+.+..+++.+.+|+|+|.++.++..++...     ..++.+++.++.+.      ...+.+|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            567789999999999999999988889999999999999998753     25799999988761      2246799999


Q ss_pred             eccccccc--Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          180 DYTFFCAI--EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       180 ~~~~~~~~--~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      ...-+...  +.     ......|+...+.|++||.+++..+..          .....+.+.+++.++..+.
T Consensus        91 ~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs----------~Ed~ivk~~~~e~~~k~i~  153 (182)
T d1wg8a2          91 ADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS----------LEDRVVKRFLRESGLKVLT  153 (182)
T ss_dssp             EECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH----------HHHHHHHHHHHHHCSEESC
T ss_pred             EEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc----------chhHHHHHHHhhccceecc
Confidence            75433221  10     233567888999999999999888533          1345688888888776543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.77  E-value=1.9e-08  Score=79.94  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=66.9

Q ss_pred             HHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCC
Q 024021           96 PIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE  173 (274)
Q Consensus        96 ~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~  173 (274)
                      ..+..+++... .++.+|||||||+|.++..+++.+.+++++|+++.+++.++++....   ++++++.+|+.+.. +..
T Consensus         8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_           8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhcccccc
Confidence            33455555543 45689999999999999999998899999999999999999987654   57999999999843 333


Q ss_pred             CeeEEEeccccc
Q 024021          174 LFDLIFDYTFFC  185 (274)
Q Consensus       174 ~~D~v~~~~~~~  185 (274)
                      ....|+++..++
T Consensus        85 ~~~~vv~NLPYn   96 (235)
T d1qama_          85 QSYKIFGNIPYN   96 (235)
T ss_dssp             CCCEEEEECCGG
T ss_pred             ccceeeeeehhh
Confidence            334556555544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=2.8e-08  Score=78.80  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             CCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEEecc
Q 024021          109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYT  182 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v~~~~  182 (274)
                      ..+++|+|+|.|.-++.++  .+..+++.+|.+..-+.+.+......++ .++.++...+...    ...++||+|++..
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEEhh
Confidence            4799999999999887665  5888999999999999998887777666 4688888777552    2245799999987


Q ss_pred             cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024021          183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP  255 (274)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~  255 (274)
                      +-.      ...+++-....+++||.+++.-        |..+.-..++..+.++..|+.+..+..+..+...
T Consensus       150 va~------l~~ll~~~~~~l~~~g~~i~~K--------G~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~  208 (239)
T d1xdza_         150 VAR------LSVLSELCLPLVKKNGLFVALK--------AASAEEELNAGKKAITTLGGELENIHSFKLPIEE  208 (239)
T ss_dssp             CSC------HHHHHHHHGGGEEEEEEEEEEE--------CC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTC
T ss_pred             hhC------HHHHHHHHhhhcccCCEEEEEC--------CCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCC
Confidence            643      2467888999999999998876        3332223455566778889999888776655443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=1.9e-08  Score=82.41  Aligned_cols=107  Identities=16%  Similarity=0.113  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      ..+.+||-||.|.|..+..+++  +..+|+++|+++.+++.+++..+...   ..++++++.+|..+.  ...++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            3468999999999999999987  34589999999999999999765321   246899999999872  3356899999


Q ss_pred             ecccccc-cChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCA-IEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~-~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +...-.. .+..  ...++++.+.+.|+|||++++..
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            7533211 1111  12578899999999999998865

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=3.4e-08  Score=80.90  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCCC---CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTW---CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~---~~~~~~D~v  178 (274)
                      ..+.+||-+|.|.|..+..+.+ .+ .+++++|+++++++.+++..+..   ...++++++.+|....   ...++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4457999999999999999887 34 48999999999999999976431   1247899999998872   334689999


Q ss_pred             EecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024021          179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS  245 (274)
Q Consensus       179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  245 (274)
                      +....-..-+..  ....+++.+.+.|+|||++++...+....      .-....+.+.+++....++.
T Consensus       159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~------~~~~~~i~~~l~~vF~~~~~  221 (290)
T d1xj5a_         159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH------MDIIEDIVSNCREIFKGSVN  221 (290)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC------HHHHHHHHHHHHHHCSSCEE
T ss_pred             EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHH------HHHHHHHHhhhhhhccccee
Confidence            974331111111  12578899999999999999875322110      00123455566666544444

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=4.5e-08  Score=79.52  Aligned_cols=133  Identities=15%  Similarity=0.112  Sum_probs=92.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhc---CCCCcceEEEEcccCC--CCCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSS---LPNAKFVSFLKADFFT--WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~--~~~~~~~D~v~  179 (274)
                      ..+.+||-+|.|.|..+..+.+ . ..+++.+|+++++++.|++..+.   ....++++++.+|...  ....++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4468999999999999999887 3 45999999999999999998743   1124789999999987  23456899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      ....-..-+..  ...++++.+.+.|+|||+++....+....      .-....+.+.+++. |..+..
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~------~~~~~~i~~tl~~~-F~~v~~  215 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT------PELITNVQRDVKEI-FPITKL  215 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC------HHHHHHHHHHHHTT-CSEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcccc------HHHHHHHHHhhhhh-cCceEE
Confidence            75332111100  12578899999999999988765221100      01234566667766 555444

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.1e-08  Score=80.13  Aligned_cols=133  Identities=19%  Similarity=0.191  Sum_probs=90.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCCC--CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      ..+++||-+|.|.|..+..+.+  ...+++.+|+++.+++.|++..+..   ...++++++.+|....  ...++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            3458999999999999999987  3459999999999999999976431   1247899999998872  3356899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                      +...-..-+..  ....+++.+++.|+|||++++...+....      .-....+.+.+++. |..+..
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~------~~~~~~~~~tl~~~-F~~v~~  218 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH------LDLIKEMRQFCQSL-FPVVAY  218 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC------HHHHHHHHHHHHHH-CSEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhh------HHHHHHHHHHHHhc-CCeeeE
Confidence            75321111111  12467899999999999998875332110      00124445556553 666554

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.72  E-value=2e-08  Score=82.75  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEE
Q 024021          107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~--~~~~~~D~v~  179 (274)
                      ..+.+||-+|.|.|..+..+++ .. .+|+++|+++.+++.+++..+...   ..++++++.+|..+.  ...++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4468999999999999999988 33 599999999999999999876532   137899999999872  2456899999


Q ss_pred             ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....-..-+..  ....+++.+.+.|+|||+++...
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            75432111111  23678899999999999998865

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.70  E-value=1.6e-08  Score=79.73  Aligned_cols=130  Identities=25%  Similarity=0.349  Sum_probs=87.4

Q ss_pred             HHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           96 PIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        96 ~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ....-++... ..++.+|||.|||+|.++..+.+   ....++|+|+++.++..          ..+..++.+|......
T Consensus         6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~~~   75 (223)
T d2ih2a1           6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLWEP   75 (223)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGCCC
T ss_pred             HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcccc
Confidence            3333344433 33457999999999999887765   45689999999864322          2346788888888777


Q ss_pred             CCCeeEEEecccccccCh---------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024021          172 TELFDLIFDYTFFCAIEP---------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~---------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~  224 (274)
                      ...||+|+++..+.....                           .....++.+..+.|++||++.++.....-.     
T Consensus        76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~-----  150 (223)
T d2ih2a1          76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLV-----  150 (223)
T ss_dssp             SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGT-----
T ss_pred             ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeecc-----
Confidence            789999999987643210                           012356788999999999988876432111     


Q ss_pred             cccCHHHHHHHHhcCCC
Q 024021          225 YKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~Gf  241 (274)
                       .-..+.+++.+.+.+.
T Consensus       151 -~~~~~~lR~~l~~~~~  166 (223)
T d2ih2a1         151 -LEDFALLREFLAREGK  166 (223)
T ss_dssp             -CGGGHHHHHHHHHHSE
T ss_pred             -CcchHHHHHHHHhcCC
Confidence             1134566677766543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.56  E-value=9.1e-09  Score=82.32  Aligned_cols=91  Identities=12%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCe
Q 024021           98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELF  175 (274)
Q Consensus        98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~  175 (274)
                      +..+++... .++.+|||||||+|.++..|++.+.+|+++|+++.+++.++++....   ++++++.+|+.+.. +...+
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccccccee
Confidence            455555443 35579999999999999999998899999999999988887666443   58999999999843 34556


Q ss_pred             eEEEecccccccChhHH
Q 024021          176 DLIFDYTFFCAIEPEMR  192 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~  192 (274)
                      +.|+++..++ +..+..
T Consensus        95 ~~vv~NLPY~-Ist~il  110 (245)
T d1yuba_          95 YKIVGNIPYH-LSTQII  110 (245)
T ss_dssp             EEEEEECCSS-SCHHHH
T ss_pred             eeEeeeeehh-hhHHHH
Confidence            6677766654 554433

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.2e-06  Score=66.48  Aligned_cols=120  Identities=13%  Similarity=0.169  Sum_probs=86.9

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCC
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~~  173 (274)
                      ..++.+|||+||+.|.++..+.+   ....++++|+.+-         ..   .+++.++.+|+.+.         ....
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~---i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP---IVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC---CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc---cCCceEeecccccchhhhhhhhhccCc
Confidence            35678999999999999998876   4468999998662         11   25689999999761         2346


Q ss_pred             CeeEEEecccccccCh---------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          174 LFDLIFDYTFFCAIEP---------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~---------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++|+|++......-..         ......+.-+.++|++||.+++-.|...          ...++...++.. |+.+
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~----------~~~~l~~~l~~~-F~~V  156 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRSL-FTKV  156 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST----------THHHHHHHHHHH-EEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc----------cHHHHHHHHHhh-cCEE
Confidence            7999999877544211         1124666778899999999999887542          456777777764 7766


Q ss_pred             EEee
Q 024021          245 SIVD  248 (274)
Q Consensus       245 ~~~~  248 (274)
                      .+..
T Consensus       157 ~~~K  160 (180)
T d1ej0a_         157 KVRK  160 (180)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.50  E-value=2.6e-07  Score=79.90  Aligned_cols=151  Identities=15%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             CCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC----C-----------CCeEEEEeCChHHHHHHHHHhhcCCC
Q 024021           92 GQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS----P-----------ERYVVGLEISDIAIKKAEELSSSLPN  155 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~----~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~  155 (274)
                      -+|...+.-++.... .++.+|+|.+||+|.++..+.+    .           ...++|+|+++.+...|+.+....+.
T Consensus       145 ~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         145 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            345555555554433 3457999999999999977754    1           13599999999999999988776654


Q ss_pred             C-cceEEEEcccCCCCCCCCeeEEEecccccccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024021          156 A-KFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDH  219 (274)
Q Consensus       156 ~-~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~---------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~  219 (274)
                      . .+..+...|.....+..+||+|+++.++..-..               ..-..++.++.+.|++||++.++.....-.
T Consensus       225 ~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~  304 (425)
T d2okca1         225 GTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF  304 (425)
T ss_dssp             CSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH
T ss_pred             ccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhh
Confidence            2 346788888887767788999999999854211               112458899999999999988776432110


Q ss_pred             CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          220 VGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ..     -....+++.+-+. +.+..+..
T Consensus       305 ~~-----~~~~~iR~~Ll~~-~~i~aIi~  327 (425)
T d2okca1         305 EA-----GAGETIRKRLLQD-FNLHTILR  327 (425)
T ss_dssp             CS-----THHHHHHHHHHHH-EEEEEEEE
T ss_pred             hh-----hhHHHHHHHHHHh-cchhHhhc
Confidence            00     0234566666654 33444433

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.3e-06  Score=69.16  Aligned_cols=86  Identities=20%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024021           99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL  177 (274)
Q Consensus        99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  177 (274)
                      ...++... .++.+|||||+|+|.++..|++.+.+++++|+++.+++..++........++++++.+|+.+...+. ++.
T Consensus        11 ~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-~~~   89 (278)
T d1zq9a1          11 NSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-FDT   89 (278)
T ss_dssp             HHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-CSE
T ss_pred             HHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-hhh
Confidence            33444333 3567999999999999999999889999999999999999998876655578999999998855433 467


Q ss_pred             EEeccccc
Q 024021          178 IFDYTFFC  185 (274)
Q Consensus       178 v~~~~~~~  185 (274)
                      |+++..++
T Consensus        90 vV~NLPY~   97 (278)
T d1zq9a1          90 CVANLPYQ   97 (278)
T ss_dssp             EEEECCGG
T ss_pred             hhcchHHH
Confidence            77766654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.45  E-value=1e-06  Score=72.79  Aligned_cols=135  Identities=12%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~  181 (274)
                      ..++.+|||++||.|.=+..++.   ....++++|.++..+...+.+....+. .++.+...|.... .....||.|++.
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEc
Confidence            56778999999999998777764   556899999999999999998887765 4577777776653 335679999973


Q ss_pred             cc------ccccC-------hh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024021          182 TF------FCAIE-------PE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF  241 (274)
Q Consensus       182 ~~------~~~~~-------~~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  241 (274)
                      ..      +..-+       .+       ....++....+.|+|||.++..+.+....       -..+.+...++..+|
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e-------ENE~VV~~~L~~~~~  265 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE-------ENEFVIQWALDNFDV  265 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHSSE
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH-------hHHHHHHHHHhcCCC
Confidence            22      21111       11       12577889999999999988877655321       246777888888887


Q ss_pred             cEEEEee
Q 024021          242 QAISIVD  248 (274)
Q Consensus       242 ~~~~~~~  248 (274)
                      +++.+..
T Consensus       266 ~~~~~~~  272 (313)
T d1ixka_         266 ELLPLKY  272 (313)
T ss_dssp             EEECCCS
T ss_pred             EEeeccc
Confidence            7765543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.33  E-value=1e-06  Score=69.46  Aligned_cols=104  Identities=12%  Similarity=0.076  Sum_probs=67.6

Q ss_pred             HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--
Q 024021           98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--  169 (274)
Q Consensus        98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--  169 (274)
                      +.+++.  ..++.+|||+|++.|..+..++.      ...+++++|+++........      ...+++++.+|..+.  
T Consensus        72 ~~eli~--~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          72 YHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGG
T ss_pred             HHHHHH--HhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecccccHHH
Confidence            444444  34578999999999988776653      45799999998753322211      126799999998652  


Q ss_pred             ---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          170 ---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       170 ---~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                         .....+|+|+.-.. | ........+  .+...|++||++++.+
T Consensus       144 ~~~l~~~~~dlIfID~~-H-~~~~v~~~~--~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         144 FEHLREMAHPLIFIDNA-H-ANTFNIMKW--AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             GGGGSSSCSSEEEEESS-C-SSHHHHHHH--HHHHTCCTTCEEEECS
T ss_pred             HHHHHhcCCCEEEEcCC-c-chHHHHHHH--HHhcccCcCCEEEEEc
Confidence               22345788775443 2 222233232  3568999999998865

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=6.5e-06  Score=66.90  Aligned_cols=132  Identities=15%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~  181 (274)
                      ..++.+|||+++|.|.=+..++.  .+..++++|.++..+...+++....+.. ++.....|...  ....+.||.|++.
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEe
Confidence            45678999999999999988876  4468999999999999999999888754 34444444433  2345679999974


Q ss_pred             cc------ccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-C
Q 024021          182 TF------FCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-G  240 (274)
Q Consensus       182 ~~------~~~~~~-------~-------~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G  240 (274)
                      ..      +..-|+       .       ....++..+.+.|+|||+++..+.+....       -+.+.+.+.++.+ +
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-------ENE~vv~~~l~~~~~  251 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-------ENSLQIKAFLQRTAD  251 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-------GTHHHHHHHHHHCTT
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh-------hCHHHHHHHHHhCCC
Confidence            22      221111       1       12578899999999999998877655321       1456777777774 4


Q ss_pred             CcEEE
Q 024021          241 FQAIS  245 (274)
Q Consensus       241 f~~~~  245 (274)
                      |+++.
T Consensus       252 ~~~~~  256 (284)
T d1sqga2         252 AELCE  256 (284)
T ss_dssp             CEECS
T ss_pred             cEEec
Confidence            65543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.19  E-value=7.9e-06  Score=64.03  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             cHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024021           95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP  171 (274)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  171 (274)
                      ...+..+.+.. ..+..+|+|+|||.|.++.+++..  ...+.|+++--...+.. ......+ .+-+++...+-....+
T Consensus        52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~-~ni~~~~~~~dv~~l~  129 (257)
T d2p41a1          52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYG-WNLVRLQSGVDVFFIP  129 (257)
T ss_dssp             HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTT-GGGEEEECSCCTTTSC
T ss_pred             HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-ccccccc-cccccchhhhhHHhcC
Confidence            44455555444 345579999999999999999874  35788888832210000 0001111 1234555554444555


Q ss_pred             CCCeeEEEecccccccCh----hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          172 TELFDLIFDYTFFCAIEP----EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       172 ~~~~D~v~~~~~~~~~~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                      ++.+|+|+|...-..-..    ...-.+++.+.++|+|||-|++-.+.+
T Consensus       130 ~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p  178 (257)
T d2p41a1         130 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  178 (257)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence            678999999765432111    122367788889999999999877654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.2e-06  Score=69.95  Aligned_cols=60  Identities=8%  Similarity=-0.022  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW  169 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  169 (274)
                      .++..|||||||+|.++..|++.+.+++++|+++.+++..+......   ++++++.+|+.+.
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~   79 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhh
Confidence            45679999999999999999999999999999999999998754332   6899999999874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.6e-05  Score=62.66  Aligned_cols=126  Identities=9%  Similarity=0.058  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v  178 (274)
                      ..++.+|||++||.|.-+..++.   ....++++|+++..+...++++...+. .++.+...|.....+    .++||.|
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceeeEE
Confidence            46678999999999998877765   566999999999999999999988876 468899998876332    2579999


Q ss_pred             Eecccccc------cCh------------hH----HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024021          179 FDYTFFCA------IEP------------EM----RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL  236 (274)
Q Consensus       179 ~~~~~~~~------~~~------------~~----~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (274)
                      ++...-..      -++            ..    ...++.... .++|||.++..+.+....       -+.+.+...+
T Consensus       171 L~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~-------ENe~vV~~~L  242 (293)
T d2b9ea1         171 LLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQE-------ENEDVVRDAL  242 (293)
T ss_dssp             EECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGG-------GTHHHHHHHH
T ss_pred             eecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChh-------HhHHHHHHHH
Confidence            97533111      110            00    123444444 478999888777554321       1456677777


Q ss_pred             hcCC
Q 024021          237 QPMG  240 (274)
Q Consensus       237 ~~~G  240 (274)
                      +.++
T Consensus       243 ~~~~  246 (293)
T d2b9ea1         243 QQNP  246 (293)
T ss_dssp             TTST
T ss_pred             HhCC
Confidence            7654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.2e-06  Score=72.93  Aligned_cols=122  Identities=15%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhC----CC----------------CeEEEEeCChHHHHHHHHHhh
Q 024021           93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS----PE----------------RYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~----~~----------------~~v~~vD~~~~~~~~a~~~~~  151 (274)
                      +|...+.-++... ..++.+|+|..||+|.++..+.+    ..                ..++|+|+++.+...|+-+.-
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            4555544444433 34457999999999999876543    11                258999999999999998876


Q ss_pred             cCCCCc----ceEEEEcccCC--CCCCCCeeEEEecccccccCh------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024021          152 SLPNAK----FVSFLKADFFT--WCPTELFDLIFDYTFFCAIEP------------EMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       152 ~~~~~~----~~~~~~~d~~~--~~~~~~~D~v~~~~~~~~~~~------------~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..+...    ...+..++...  .....+||+|+++.++..-..            ..-..++.++.+.|++||++.++.
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence            554321    22344455443  223467999999998853210            112358999999999999988876


Q ss_pred             c
Q 024021          214 F  214 (274)
Q Consensus       214 ~  214 (274)
                      .
T Consensus       308 P  308 (524)
T d2ar0a1         308 P  308 (524)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.04  E-value=5.5e-06  Score=69.85  Aligned_cols=101  Identities=16%  Similarity=-0.023  Sum_probs=74.7

Q ss_pred             CCCeEEEEcCCcchhHHHhh-CCCC-eEEEEeCChHHHHHHHHHhhcCCCC--------------cceEEEEcccCCC--
Q 024021          108 PKGRALVPGCGTGYDVVAMA-SPER-YVVGLEISDIAIKKAEELSSSLPNA--------------KFVSFLKADFFTW--  169 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~-~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~d~~~~--  169 (274)
                      .+.+|||..||+|..++..+ +.+. +|++.|+|+.+++.+++++..++..              ..+.+...|....  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            46799999999999998554 4444 8999999999999999998776532              1355566665442  


Q ss_pred             CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          170 CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       170 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .....||+|.... +.. +    ..+++...+.++.||.+.++.-
T Consensus       125 ~~~~~fDvIDiDP-fGs-~----~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP-FGS-P----MEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC-SSC-C----HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCC-CCC-c----HHHHHHHHHHhccCCEEEEEec
Confidence            2345799988654 331 1    3578889999999999998763

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.84  E-value=0.00013  Score=60.61  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             CeEEEEcCCcchhHHHhhC------------------CCCeEEEEeCChHHHHHHHHHhhcCCCCcc---eEEEEcccCC
Q 024021          110 GRALVPGCGTGYDVVAMAS------------------PERYVVGLEISDIAIKKAEELSSSLPNAKF---VSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~------------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~---~~~~~~d~~~  168 (274)
                      .+|.|+||.+|.+++.+..                  +..+|.--|+-..-.+..-+.++.......   +..+.+.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            5899999999999853332                  234788888866555555555544322111   3335567766


Q ss_pred             -CCCCCCeeEEEecccccccCh-------------------------------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024021          169 -WCPTELFDLIFDYTFFCAIEP-------------------------------EMRAAWAQKIKDFLKPDGELITLMFPI  216 (274)
Q Consensus       169 -~~~~~~~D~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~  216 (274)
                       ..|.++.|+++++..+|+++.                               .++..+|+.=.+-|+|||++++..++.
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence             788899999999999988741                               123567777788899999999988765


Q ss_pred             CCCC----------------------------------CCCCcccCHHHHHHHHhcCC-CcEEEEeeccc
Q 024021          217 SDHV----------------------------------GGPPYKVSVSDYEEVLQPMG-FQAISIVDNKL  251 (274)
Q Consensus       217 ~~~~----------------------------------~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~  251 (274)
                      .+..                                  .-|.|..+.+|+.+.++..| |.+..++....
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~  282 (359)
T d1m6ex_         213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEI  282 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeec
Confidence            4320                                  11344568999999998877 88877765443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.63  E-value=2.6e-05  Score=61.59  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=60.6

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC---C-----CCcceEEEEcccCCCC--CCCCeeEEE
Q 024021          110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL---P-----NAKFVSFLKADFFTWC--PTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~-----~~~~~~~~~~d~~~~~--~~~~~D~v~  179 (274)
                      .+|||+-||.|..+..++..|++|+++|.+|......+..+...   .     ...+++++.+|..+..  ..+.||+|+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIY  169 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEEE
Confidence            58999999999999999999999999999998877666544321   1     1247999999987632  345799999


Q ss_pred             ecccccc
Q 024021          180 DYTFFCA  186 (274)
Q Consensus       180 ~~~~~~~  186 (274)
                      .-..|..
T Consensus       170 lDPMFp~  176 (250)
T d2oyra1         170 LDPMFPH  176 (250)
T ss_dssp             ECCCCCC
T ss_pred             ECCCCcc
Confidence            9888754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.28  E-value=0.00025  Score=55.88  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=52.9

Q ss_pred             CccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024021           93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS  151 (274)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~  151 (274)
                      .|...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|++++-++.|++++.
T Consensus       197 kP~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45667778887777888999999999999999999999999999999999999999874

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.25  E-value=0.00036  Score=56.77  Aligned_cols=64  Identities=9%  Similarity=-0.044  Sum_probs=56.6

Q ss_pred             cCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           90 DIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ....|...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|++++.++.|+.++...
T Consensus       232 pt~kP~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         232 PARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             SSCCCTHHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCcCchHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            3456678888888877788899999999999999999999999999999999999999987554

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.23  E-value=0.011  Score=47.42  Aligned_cols=136  Identities=6%  Similarity=-0.045  Sum_probs=93.3

Q ss_pred             CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC---------CCCCCeeE
Q 024021          110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW---------CPTELFDL  177 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~---------~~~~~~D~  177 (274)
                      ..|+.+|||-=.-...+.. .+.+++=+|. |++++.-++.+...+.  ..+..++..|+.+.         ......-+
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl  169 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  169 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence            5677798887655555532 4568888886 8888777777665432  34678888888751         11234567


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CC----C--CCcccCHHHH
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VG----G--PPYKVSVSDY  232 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~-------------------~~----~--~~~~~~~~~~  232 (274)
                      +++-+++.|++++....+++.+.+...||+.+++...+....                   ..    .  ..+.....+.
T Consensus       170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (297)
T d2uyoa1         170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAVV  249 (297)
T ss_dssp             EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCCH
T ss_pred             EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhhH
Confidence            888899999999999999999999999999988754332211                   00    0  0112245678


Q ss_pred             HHHHhcCCCcEEEE
Q 024021          233 EEVLQPMGFQAISI  246 (274)
Q Consensus       233 ~~~l~~~Gf~~~~~  246 (274)
                      .++|+.+||++...
T Consensus       250 ~~~l~~~Gw~~~~~  263 (297)
T d2uyoa1         250 ADWLNRHGWRATAQ  263 (297)
T ss_dssp             HHHHTTTTEEEEEE
T ss_pred             HHHHHhCCCEEEEe
Confidence            89999999987654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.16  E-value=0.0023  Score=47.01  Aligned_cols=95  Identities=17%  Similarity=0.098  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------CCCCC
Q 024021          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----------WCPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----------~~~~~  173 (274)
                      ..++.+||-+||| .|..+.++++ .|++|+++|.+++.++.|++...      ...+...+...          .....
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga------~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------DVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC------cEEEeccccccccchhhhhhhccccc
Confidence            4567899999988 4555556665 78899999999999999987542      12222111111          01134


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+|+|+..-.     .   ...++...++++++|.+++...
T Consensus        98 g~D~vid~~g-----~---~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          98 LPNVTIDCSG-----N---EKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceeeecCC-----C---hHHHHHHHHHHhcCCceEEEec
Confidence            6899984321     1   2456788899999999888654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00043  Score=51.13  Aligned_cols=96  Identities=13%  Similarity=0.062  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC--CCCCCCeeEEEe
Q 024021          106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT--WCPTELFDLIFD  180 (274)
Q Consensus       106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~D~v~~  180 (274)
                      ..++.+||-+|+| .|..+..+++ .|++++++|.+++.++.+++.-..       .++.. +-.+  ....+.+|+|+.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEeeccchHHHHHhhhcccceEEE
Confidence            4567899999998 5566666665 789999999999999999876311       12221 1111  122357998886


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .-.-..-      ..+....++++|+|++++...
T Consensus        98 ~~~~~~~------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          98 CASSLTD------IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CCSCSTT------CCTTTGGGGEEEEEEEEECCC
T ss_pred             EecCCcc------chHHHHHHHhhccceEEEecc
Confidence            4221110      013457889999999988653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.10  E-value=0.00041  Score=54.53  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCcchhHHHhhC------CC------------------------------------CeEEEEeCChHHHHHH
Q 024021          109 KGRALVPGCGTGYDVVAMAS------PE------------------------------------RYVVGLEISDIAIKKA  146 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~------~~------------------------------------~~v~~vD~~~~~~~~a  146 (274)
                      +..++|..||+|.+.+..+-      +|                                    ..++|.|+++.+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            35799999999999876542      11                                    2467888889888888


Q ss_pred             ---HHHhhcCCCCcceEEEEcccCCCC------CCCCeeEEEecccccc-c------ChhHHHHHHHHHHhcccCCcEEE
Q 024021          147 ---EELSSSLPNAKFVSFLKADFFTWC------PTELFDLIFDYTFFCA-I------EPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       147 ---~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~D~v~~~~~~~~-~------~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                         ++++...++...+++...|+++..      ++...++|+++..+.. +      ..+....+...+.+.+.....++
T Consensus       131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~  210 (249)
T d1o9ga_         131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA  210 (249)
T ss_dssp             HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEE
Confidence               457778888888999999998732      3456899999988765 3      12345677778888887666666


Q ss_pred             EEE
Q 024021          211 TLM  213 (274)
Q Consensus       211 ~~~  213 (274)
                      ++.
T Consensus       211 it~  213 (249)
T d1o9ga_         211 VTD  213 (249)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.85  E-value=0.00069  Score=53.95  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=54.0

Q ss_pred             CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024021           92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ..|...+..++.....++..|||.-||+|..+.+..+.|.+.+|+|+++..++.|++++...
T Consensus       191 ~kP~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         191 QKPAAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCCHHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             ccchhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34566677888776778899999999999999999999999999999999999999988653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.84  E-value=0.00033  Score=52.18  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC----CCCCCCCe
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~----~~~~~~~~  175 (274)
                      ..++.+||=+|||. |..+..+++ .|+ +|+++|.+++.++.+++.-.       ..++..   +..    +......+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i~~~~~~~~~~v~~~t~g~G~   97 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDILNYKNGHIEDQVMKLTNGKGV   97 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEECGGGSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccccccchhHHHHHHHHhhccCc
Confidence            45667898899986 677777776 676 79999999999999987531       112211   111    12233569


Q ss_pred             eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+|+..-.-        ...++...++++|+|.+++.-.
T Consensus        98 D~vid~~g~--------~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          98 DRVIMAGGG--------SETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             EEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEccCC--------HHHHHHHHHHHhcCCEEEEEee
Confidence            998843221        1345778899999999988654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00044  Score=51.75  Aligned_cols=93  Identities=18%  Similarity=0.126  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---ccc-------CCCCCCC
Q 024021          107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADF-------FTWCPTE  173 (274)
Q Consensus       107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~-------~~~~~~~  173 (274)
                      .++.+||-+|||. |..+..+++ .|+ +|+++|.+++.++.+++.-..       ..+.   .|.       .+.....
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-------LTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-------EEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccccce-------EEEeccccchHHHHHHHHHhhCCC
Confidence            4568999999874 555666666 787 899999999999999775311       1111   111       1112234


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      .+|+|+..-.-        ...++...+++++||.+++...
T Consensus       100 g~Dvvid~vG~--------~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATGD--------SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSSC--------TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEeecCCc--------hhHHHHHHHHhcCCCEEEEEee
Confidence            69999843211        1245778899999999987653

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.59  E-value=0.0064  Score=49.36  Aligned_cols=131  Identities=14%  Similarity=-0.043  Sum_probs=82.6

Q ss_pred             CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~  183 (274)
                      ..+.+|||+-||.|.+...|.+.|.+ +.++|+++.+++..+.+.+..        ..+|+.+...  -..+|+++....
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~~~~~~Dll~ggpP   80 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEKTIPDHDILCAGFP   80 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGGGSCCCSEEEEECC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchhhcceeeeeecccc
Confidence            34689999999999999999888884 566999999999999888532        2467766322  246899998655


Q ss_pred             ccccCh------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          184 FCAIEP------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       184 ~~~~~~------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      -..++.            .....+ -++.+.++|.  +++.+....-.  ........+.+.+.|++.||.+....-..
T Consensus        81 Cq~fS~ag~~~g~~d~r~~l~~~~-~~~i~~~kP~--~~~lENV~~~~--~~~~~~~~~~i~~~l~~lGY~~~~~vl~a  154 (327)
T d2c7pa1          81 CQAFSISGKQKGFEDSRGTLFFDI-ARIVREKKPK--VVFMENVKNFA--SHDNGNTLEVVKNTMNELDYSFHAKVLNA  154 (327)
T ss_dssp             CTTTCTTSCCCGGGSTTSCHHHHH-HHHHHHHCCS--EEEEEEEGGGG--TGGGGHHHHHHHHHHHHTTBCCEEEEEEG
T ss_pred             cchhhhhhhhcCCcccchhHHHHH-HHHHhccCCc--EEecccchhhh--hhccchhhHHhhhHHHhcCCcceeeEecH
Confidence            433311            122333 3455667875  33333222100  00011135788889999999876544333

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0023  Score=52.30  Aligned_cols=57  Identities=18%  Similarity=0.032  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .+..|||||+|.|.++..+.+. + .+++++|.++...+..++....    ++++++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~----~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG----SPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT----SSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC----CCcEEEeCchhh
Confidence            3568999999999999999874 3 4899999999999999887642    468999999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.55  E-value=0.014  Score=48.27  Aligned_cols=43  Identities=21%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             CeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhc
Q 024021          110 GRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSS  152 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~  152 (274)
                      .+|+|+|+|+|.++..+++         ....++.+|.|+.....-+++...
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            5899999999999876654         234799999999988777776554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.54  E-value=0.00035  Score=53.07  Aligned_cols=102  Identities=16%  Similarity=0.088  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC----CCCCCCe
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT----WCPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~----~~~~~~~  175 (274)
                      ..++.+||-+|||. |..+..+++ .++ +|+++|.++..++.|++.-..       ..+.   .|+.+    ......+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-------IADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-------EEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcccc-------EEEeCCCcCHHHHHHHHhCCCCc
Confidence            45678999999998 445556665 555 899999999999999876311       1111   11111    1223468


Q ss_pred             eEEEecccccc-------cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          176 DLIFDYTFFCA-------IEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       176 D~v~~~~~~~~-------~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+++..--...       +........++...++++|||.+++.-.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            99995422111       1111123578999999999999988754

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0019  Score=52.92  Aligned_cols=127  Identities=17%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             CCeEEEEcCCcchhHHHhhCCCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEec
Q 024021          109 KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~D~v~~~  181 (274)
                      +.+|+|+.||.|.+...+...|.   .+.++|+++.+++..+.+.+      ...++.+|+.+...    ...+|+++..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~~~~~Dll~gg   75 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcCCCCccEEEee
Confidence            56899999999999888876665   36789999999998888863      34566777765321    2368999987


Q ss_pred             ccccccCh--------hHHHHHHHHHHhc---c--cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          182 TFFCAIEP--------EMRAAWAQKIKDF---L--KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       182 ~~~~~~~~--------~~~~~~l~~~~~~---L--~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ..-..++.        +.+..++-.+.++   +  +|.  +++.+....-.     ..-..+.+.+.|+..||.+....-
T Consensus        76 pPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~-----~~~~~~~i~~~l~~~GY~v~~~vl  148 (343)
T d1g55a_          76 PPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFE-----VSSTRDLLIQTIENCGFQYQEFLL  148 (343)
T ss_dssp             CC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGG-----GSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcc-----cchhhHHHHhhhhccccccceeee
Confidence            66544421        1122233333333   3  453  44444332111     011357888999999998865433

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.44  E-value=0.021  Score=39.74  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024021          111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY  181 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~  181 (274)
                      +|+=+|+  |..+..+++    .|..|+.+|.+++.++.+....       ...++.+|..+.     ..-..+|.+++.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            5666665  667666654    7899999999999998876653       367889998871     233568888853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                           .+++.....+..+.+.+.+...+.. .              ...+..+.++..|-..
T Consensus        73 -----t~~d~~N~~~~~~~k~~~~~~iI~~-~--------------~~~~~~~~l~~~G~d~  114 (132)
T d1lssa_          73 -----TGKEEVNLMSSLLAKSYGINKTIAR-I--------------SEIEYKDVFERLGVDV  114 (132)
T ss_dssp             -----CSCHHHHHHHHHHHHHTTCCCEEEE-C--------------SSTTHHHHHHHTTCSE
T ss_pred             -----CCcHHHHHHHHHHHHHcCCceEEEE-e--------------cCHHHHHHHHHCCCCE
Confidence                 2223333455666677777744432 2              2335566778888754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0013  Score=48.73  Aligned_cols=91  Identities=15%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC----CCCCCCee
Q 024021          107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~----~~~~~~~D  176 (274)
                      .++.+||-.|+  |.|..+..+++ .|+++++++-+++..+.+++.-.       ..++.   .|+.+    ......+|
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA-------HEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------SEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc-------ccccccccccHHHHhhhhhccCCce
Confidence            46689999996  45666777776 78999999999988888876421       11221   12211    12345799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+....         ...++...++|+|+|.++..-
T Consensus       100 ~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         100 IIIEMLA---------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             EEEESCH---------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEeeccc---------HHHHHHHHhccCCCCEEEEEe
Confidence            9995321         135678889999999988753

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.32  E-value=0.013  Score=47.10  Aligned_cols=128  Identities=13%  Similarity=0.019  Sum_probs=78.8

Q ss_pred             CeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccc
Q 024021          110 GRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCA  186 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~  186 (274)
                      ++|||+-||.|.+..-+...|.+ +.++|+++.+.+..+.+.+       ..++.+|+.+...  -..+|+++....-..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g~PCq~   73 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPCQS   73 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEECCCCTT
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeecccccc
Confidence            47999999999999888777885 5599999999988888863       3457789887422  246899998755443


Q ss_pred             cC--------hhHHHHH---HHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024021          187 IE--------PEMRAAW---AQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD  248 (274)
Q Consensus       187 ~~--------~~~~~~~---l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  248 (274)
                      ++        .+.+..+   +-++.+.++|.  +++.+....-.  ..........+...+...||.+....-
T Consensus        74 fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk--~~~lENV~~~~--~~~~~~~~~~~l~~l~~lGY~v~~~vl  142 (324)
T d1dcta_          74 WSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMM--AQRHNKAVQEFIQEFDNAGYDVHIILL  142 (324)
T ss_dssp             TSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS--EEEEEEEGGGG--SGGGHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccccchHHHHHHHHHhhCCc--eeecccccccc--ccccchhhHHHHhHHhhCCCccceeee
Confidence            31        1222122   23355667885  33333221100  000111345666777777887655433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.037  Score=40.07  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEec
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~D~v~~~  181 (274)
                      ..++.+||=+|||. |..+.++++ .|++++++|.+++..+.+++.-.       ..++...-..  ....+.+|+++..
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa-------d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA-------DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC-------cEEEECchhhHHHHhcCCCceeeee
Confidence            45678898898864 445556665 78899999999998888876532       1222211111  2233579998854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      -.-.        ..+....+.++++|++++.-.
T Consensus       101 ~g~~--------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         101 VAAP--------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CSSC--------CCHHHHHTTEEEEEEEEECCC
T ss_pred             eecc--------hhHHHHHHHHhcCCEEEEecc
Confidence            2211        124667889999999988643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.79  E-value=0.026  Score=40.74  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=57.0

Q ss_pred             CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024021          110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI  187 (274)
Q Consensus       110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  187 (274)
                      ++|.=||+|.  +.++..+.+.|.+|+++|.+++.++.+++...       +.-...+. +.  -...|+|+.     ..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-------~~~~~~~~-~~--~~~~DiIil-----av   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-------VDEAGQDL-SL--LQTAKIIFL-----CT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-------CSEEESCG-GG--GTTCSEEEE-----CS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-------cceeeeec-cc--ccccccccc-----cC
Confidence            3566777752  23345566689999999999998888776431       11111222 11  245798884     24


Q ss_pred             ChhHHHHHHHHHHhcccCCcEEEE
Q 024021          188 EPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       188 ~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      |......+++++...++++.+++-
T Consensus        66 p~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          66 PIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cHhhhhhhhhhhhhhcccccceee
Confidence            556778899999999998886654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.52  E-value=0.029  Score=41.12  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CCCCCC
Q 024021          106 ALPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~  174 (274)
                      ..++.+||=+|||. |..+.++++ .|+ .|+.+|.+++.++.+++.-.       ...+...-.+        ......
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-------TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-------CcccCCccchhhhhhhHhhhhcCC
Confidence            34568999999988 777777777 676 79999999999999987632       1122111111        112357


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  214 (274)
                      +|+|+-.--     .   ...++...+.+++| |.+++.-.
T Consensus        99 ~d~vie~~G-----~---~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          99 VDYSLDCAG-----T---AQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             BSEEEESSC-----C---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CcEEEEecc-----c---chHHHHHHHHhhcCCeEEEecCC
Confidence            899984211     1   24578899999996 99888654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.045  Score=39.42  Aligned_cols=92  Identities=14%  Similarity=0.052  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeE
Q 024021          106 ALPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D~  177 (274)
                      ..++.+||=+|+|.= ..+..+++ .|.+|+++|.+++.++.+++.-.       ..++..+-.+.      ...+.+|.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA-------SLTVNARQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC-------SEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc-------cccccccchhHHHHHHHhhcCCccc
Confidence            456788888988653 33345555 78899999999999999886531       12222211110      11122344


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      |++...         ...++...++|+++|++++.-
T Consensus        98 i~~~~~---------~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          98 LVTAVS---------NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EECCSC---------HHHHHHHHTTEEEEEEEEECC
T ss_pred             cccccc---------chHHHHHHHHhcCCcEEEEEE
Confidence            443222         234677889999999988864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.44  E-value=0.17  Score=39.33  Aligned_cols=60  Identities=20%  Similarity=0.115  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=.|+..|.   .+..+++.|++|+.++.+++.++.+.+.....+  .++.++.+|+.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~   66 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLS   66 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCC
Confidence            567889999987663   345666699999999999998888888776655  457788888754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.098  Score=37.79  Aligned_cols=95  Identities=19%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCC
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTE  173 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---------~~~~~  173 (274)
                      ..++.+||=+|||..... ..+++ .|+ +|+++|.++..++.|++.-..       .++..+-.+         .....
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~~~~~~~~~~~~~~~~g~   96 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGC   96 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------ccccccccccccccccccccCCC
Confidence            455689999999765554 34444 677 899999999999999875311       112211111         01134


Q ss_pred             CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       174 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      .+|+|+..-.     .   ...++...+++++||.+++....
T Consensus        97 g~Dvvid~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          97 KPEVTIECTG-----A---EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             CCSEEEECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CceEEEeccC-----C---chhHHHHHHHhcCCCEEEEEecC
Confidence            6899884221     1   24578899999999999886543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.085  Score=37.39  Aligned_cols=110  Identities=11%  Similarity=-0.013  Sum_probs=67.3

Q ss_pred             CeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024021          110 GRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD  180 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~  180 (274)
                      .+|+=+|+  |..+..+++    .+..++.+|.+++......+....    ..+.++.+|..+.     ..-+..|.|++
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            35666655  556555544    788999999998754444333322    2488999999872     12346788875


Q ss_pred             cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ..     +++.....+....+-+.|...+++..              ...+..+.++.+|-..+
T Consensus        78 ~~-----~~d~~n~~~~~~~r~~~~~~~iia~~--------------~~~~~~~~l~~~Gad~v  122 (153)
T d1id1a_          78 LS-----DNDADNAFVVLSAKDMSSDVKTVLAV--------------SDSKNLNKIKMVHPDII  122 (153)
T ss_dssp             CS-----SCHHHHHHHHHHHHHHTSSSCEEEEC--------------SSGGGHHHHHTTCCSEE
T ss_pred             cc-----ccHHHHHHHHHHHHHhCCCCceEEEE--------------cCHHHHHHHHHCCCCEE
Confidence            32     22333344455666677887777755              33455566777776543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.12  E-value=0.026  Score=39.16  Aligned_cols=100  Identities=12%  Similarity=0.039  Sum_probs=59.5

Q ss_pred             CcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecccccccC
Q 024021          118 GTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYTFFCAIE  188 (274)
Q Consensus       118 G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~D~v~~~~~~~~~~  188 (274)
                      |-|.++..+++    .|..|+.+|.+++.++.++...        ...+.+|..+..     .-...|.+++.     ++
T Consensus         7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~--------~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~~   73 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA--------THAVIANATEENELLSLGIRNFEYVIVA-----IG   73 (134)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC--------SEEEECCTTCTTHHHHHTGGGCSEEEEC-----CC
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC--------CcceeeecccchhhhccCCccccEEEEE-----cC
Confidence            44666665554    7899999999999888774321        456778887621     12357776642     22


Q ss_pred             hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024021          189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI  244 (274)
Q Consensus       189 ~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~  244 (274)
                      ++.....+-.+.+.+.+...++...              ...+..+.|+..|-..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~v  115 (134)
T d2hmva1          74 ANIQASTLTTLLLKELDIPNIWVKA--------------QNYYHHKVLEKIGADRI  115 (134)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEEC--------------CSHHHHHHHHHHTCSEE
T ss_pred             chHHhHHHHHHHHHHcCCCcEEeec--------------ccHhHHHHHHHCCCCEE
Confidence            2222233334444455666666544              34556677888886543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.07  E-value=0.087  Score=37.97  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCC--cchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-------CCCCCC
Q 024021          106 ALPKGRALVPGCG--TGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G--~G~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~  174 (274)
                      ..++.+||=+||+  .|..+..+++ .| ..|+++|.++..++.+++.-.       ...+..+-.+       ......
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA-------DYVINASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC-------ceeeccCCcCHHHHHHHHhhccc
Confidence            4556799999973  4455555554 45 599999999999999987631       1222222111       123456


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ||+|+....-        ...++...++++|||.+++...
T Consensus        98 ~d~vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          98 VDAVIDLNNS--------EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             EEEEEESCCC--------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             chhhhccccc--------chHHHhhhhhcccCCEEEEecc
Confidence            9999953221        2356778899999999988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.18  Score=39.06  Aligned_cols=62  Identities=19%  Similarity=0.115  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++.+|=.|++.|.-   +..|++.|++|+.++.+++.++.+.+.+...+...++.++.+|+.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~   72 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN   72 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence            4578899999887743   3455568999999999999998888877766555678889999875

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.011  Score=43.56  Aligned_cols=94  Identities=12%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024021          107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF  179 (274)
Q Consensus       107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~  179 (274)
                      .++.+||=.|+|  .|..+.++++ .|++|++++.+++..+.+++.-...    -++.-..|+.+    ......+|+|+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~----vi~~~~~d~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQ----VINYREEDLVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSE----EEETTTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeE----EEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            456788888665  4566677777 7899999999999999988753110    01111122221    12345799988


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ....-         ..+.....+++++|.+++..
T Consensus       103 d~~g~---------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         103 DSVGR---------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             ECSCG---------GGHHHHHHTEEEEEEEEECC
T ss_pred             eCccH---------HHHHHHHHHHhcCCeeeecc
Confidence            54322         13467888999999887643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.72  E-value=0.055  Score=37.25  Aligned_cols=100  Identities=13%  Similarity=0.019  Sum_probs=65.3

Q ss_pred             CCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEecccccccCh
Q 024021          117 CGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAIEP  189 (274)
Q Consensus       117 ~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v~~~~~~~~~~~  189 (274)
                      ||.|..+..+++  .+..++.+|.++...+..+..        .+.++.+|..+.     ..-++.+.+++.     .++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~-----~~~   72 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKANVRGARAVIVN-----LES   72 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHTTCTTCSEEEEC-----CSS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHhhhhcCcEEEEe-----ccc
Confidence            466778877776  566899999999988766433        378899998872     223467777742     233


Q ss_pred             hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024021          190 EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA  243 (274)
Q Consensus       190 ~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  243 (274)
                      +.....+-...+.+.|...+++..              ...+..+.++.+|-..
T Consensus        73 d~~n~~~~~~~r~~~~~~~iia~~--------------~~~~~~~~l~~~G~d~  112 (129)
T d2fy8a1          73 DSETIHCILGIRKIDESVRIIAEA--------------ERYENIEQLRMAGADQ  112 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEC--------------SSGGGHHHHHHHHCSE
T ss_pred             hhhhHHHHHHHHHHCCCceEEEEE--------------cCHHHHHHHHHCCCCE
Confidence            333445556667788888877765              2334445566666553

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.36  E-value=0.48  Score=36.54  Aligned_cols=60  Identities=18%  Similarity=0.165  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~   65 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTS   65 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            457888888877663   345666699999999999999998888877655  468888999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.22  E-value=0.11  Score=37.31  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             eEEEEcCCc-ch-hHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024021          111 RALVPGCGT-GY-DVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA  186 (274)
Q Consensus       111 ~vLDiG~G~-G~-~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  186 (274)
                      +|+=+|||. |. ++..|.+.|  .+|+++|.+++.++.+++...       +.....+... ......|+|+..     
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------~~~~~~~~~~-~~~~~~dlIila-----   69 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------IDEGTTSIAK-VEDFSPDFVMLS-----   69 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------CSEEESCGGG-GGGTCCSEEEEC-----
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------chhhhhhhhh-hhcccccccccc-----
Confidence            577788865 32 233454555  489999999999999987631       2122222221 112346888843     


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                      .|+.....+++.+...++++..+.-
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCchhhhhhhhhhhccccccccccc
Confidence            3455667888999999998876654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.98  E-value=0.036  Score=40.73  Aligned_cols=94  Identities=13%  Similarity=0.018  Sum_probs=60.6

Q ss_pred             CCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024021          108 PKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY  181 (274)
Q Consensus       108 ~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~~  181 (274)
                      ++.+||=-|+  |.|..+.++++ .|++|+++--+++-.+.+++.-....    +. ...+..+   ....+.+|+|+..
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v----i~-~~~~~~~~~~~~~~~gvD~vid~  105 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV----LA-REDVMAERIRPLDKQRWAAAVDP  105 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE----EE-CC---------CCSCCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee----ee-cchhHHHHHHHhhccCcCEEEEc
Confidence            3578888885  44566677776 89999999999888888876532211    11 1111111   2234579999854


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                      -.-         ..+....++|++||+++.+...
T Consensus       106 vgg---------~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         106 VGG---------RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             STT---------TTHHHHHHTEEEEEEEEECSCC
T ss_pred             CCc---------hhHHHHHHHhCCCceEEEeecc
Confidence            221         2357889999999999887654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.95  E-value=0.036  Score=42.81  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             EEEEcccCC---CCCCCCeeEEEeccccccc--------Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024021          160 SFLKADFFT---WCPTELFDLIFDYTFFCAI--------EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP  224 (274)
Q Consensus       160 ~~~~~d~~~---~~~~~~~D~v~~~~~~~~~--------~~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~  224 (274)
                      +++.+|..+   ..+++++|+|+....+..-        +.    +....++.++.++|+|||.+++....         
T Consensus         6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------   76 (256)
T d1g60a_           6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------   76 (256)
T ss_dssp             SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------
T ss_pred             EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------
Confidence            467888876   4677899999999876421        11    12356788999999999988765421         


Q ss_pred             cccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          225 YKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       225 ~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                        .....+...+...||.......+.
T Consensus        77 --~~~~~~~~~~~~~g~~~~~~iiW~  100 (256)
T d1g60a_          77 --FNCAFICQYLVSKGMIFQNWITWD  100 (256)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             --hhhhhhhhhhhcccceeeeeeEee
Confidence              134567778888999987755443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.35  Score=36.97  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024021          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  175 (274)
                      .+.++++|=.|++.|   ..+..+++.|++|+.+|.+++.++...+..      .++..+..|+.+.       ..-++.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            456889999998876   334566669999999999998877766554      2477888898762       223579


Q ss_pred             eEEEecccc
Q 024021          176 DLIFDYTFF  184 (274)
Q Consensus       176 D~v~~~~~~  184 (274)
                      |+++.+...
T Consensus        78 DilVnnAg~   86 (244)
T d1pr9a_          78 DLLVNNAAV   86 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEecccc
Confidence            999976543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.92  E-value=0.76  Score=35.14  Aligned_cols=60  Identities=18%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++.+|=.|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~   70 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSK   70 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            456778888877662   245566689999999999999988888876654  468889999876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.90  E-value=0.016  Score=42.78  Aligned_cols=91  Identities=18%  Similarity=0.138  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCCc--chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---C----CCCCCCee
Q 024021          107 LPKGRALVPGCGT--GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---T----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~----~~~~~~~D  176 (274)
                      .++.+||=.|++.  |..+.++++ .|++|+++.-+++..+.+++.-.       ...+..+-.   +    ......+|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga-------~~vi~~~~~~~~~~~~~~~~~~Gvd  100 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF-------DAAFNYKTVNSLEEALKKASPDGYD  100 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------SEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh-------hhhcccccccHHHHHHHHhhcCCCc
Confidence            4568898777754  455567766 78999999999988888877631       111221111   1    12345699


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+..     +.    ...++...++|+++|.++..-
T Consensus       101 ~v~D~-----vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2         101 CYFDN-----VG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEEES-----SC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             eeEEe-----cC----chhhhhhhhhccCCCeEEeec
Confidence            99942     22    235688999999999988754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.90  E-value=0.096  Score=40.79  Aligned_cols=90  Identities=11%  Similarity=0.051  Sum_probs=59.8

Q ss_pred             ceEEEEcccCC---CCCCCCeeEEEeccccccc--------C-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024021          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCAI--------E-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY  225 (274)
Q Consensus       158 ~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~--------~-~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~  225 (274)
                      +--|+.+|..+   ..+++++|+|+...++..-        + .+....++.++.++|+|+|.+++........  ....
T Consensus         4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~--~~~~   81 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQG--EAGS   81 (279)
T ss_dssp             EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCC--CTTB
T ss_pred             cceEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccc--cccc
Confidence            34577788876   5678999999999876421        0 1335677899999999999988865322211  1111


Q ss_pred             ccCHHHHHHHHhcCCCcEEEEeec
Q 024021          226 KVSVSDYEEVLQPMGFQAISIVDN  249 (274)
Q Consensus       226 ~~~~~~~~~~l~~~Gf~~~~~~~~  249 (274)
                      ......+..+++..||.......+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~i~~  105 (279)
T d1eg2a_          82 GDLISIISHMRQNSKMLLANLIIW  105 (279)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEEEE
T ss_pred             cchhhHHHHHHhccCceeeeeeee
Confidence            123456667788889998766543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.86  E-value=0.22  Score=35.91  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=60.1

Q ss_pred             CCCCCeEEEEcCCcchh-HHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCee
Q 024021          106 ALPKGRALVPGCGTGYD-VVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~-~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~D  176 (274)
                      ..++.+||=+|||.-.. +..+++ .|. .++++|.++..++.+++.-.       ..++..+-.+      ....+.||
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            44567899999875433 344444 455 77889999999999987631       2233222211      11235799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|+..-.     .   ...++...++++|+|.+++.-.
T Consensus        99 ~vid~~G-----~---~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTG-----S---PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEECSC-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCC-----c---HHHHHHHHhcccCceEEEEEee
Confidence            9984321     1   2456788999999999987643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.68  E-value=0.012  Score=43.33  Aligned_cols=90  Identities=21%  Similarity=0.208  Sum_probs=58.2

Q ss_pred             CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCC----CCCCCCee
Q 024021          107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFT----WCPTELFD  176 (274)
Q Consensus       107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~----~~~~~~~D  176 (274)
                      .++.+||=.|  .|.|..+.++++ .|++++++.-+++..+.+++.-    . +  ..+.   .|+.+    ......||
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G----a-~--~vi~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG----V-E--YVGDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC----C-S--EEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccc----c-c--ccccCCccCHHHHHHHHhCCCCEE
Confidence            4567888876  345566677766 7889999988888787776532    1 1  1222   12211    12346799


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      +|+..-.     .    ..++.+.++|+++|+++..
T Consensus        97 ~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          97 VVLNSLA-----G----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEECCC-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEeccc-----c----hHHHHHHHHhcCCCEEEEE
Confidence            9995332     1    2456778999999998875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.68  E-value=0.97  Score=34.83  Aligned_cols=59  Identities=22%  Similarity=0.188  Sum_probs=44.9

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++.+|=.|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...   .++.++.+|+.+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~   65 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTK   65 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCC
Confidence            4578889999877632   3455568999999999999888877776543   457888888875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.66  E-value=0.21  Score=35.59  Aligned_cols=92  Identities=18%  Similarity=0.144  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc----ccCC---CCCCCCee
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD  176 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~---~~~~~~~D  176 (274)
                      ..++.+||=.|+|.-..+ ..+++ .|++|+++|.+++.++.+++.-.        +.+..    |...   ....+.+|
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga--------~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA--------DLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC--------SEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc--------ceecccccchhhhhcccccCCCce
Confidence            456788988998775544 34444 78899999999999998877431        11111    1111   01123344


Q ss_pred             EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       177 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      +|++..     .    ...++...++++|+|.+++...
T Consensus        97 ~v~~~~-----~----~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          97 AVVTAV-----S----KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             EEESSC-----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EEeecC-----C----HHHHHHHHHHhccCCceEeccc
Confidence            444321     1    2456889999999999888653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.24  Score=37.99  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  171 (274)
                      .+.++.+|=-|++.|.   .+..+++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            3567788888888873   345666799999999999999988888776654  56889999987621           1


Q ss_pred             CCCeeEEEeccccc
Q 024021          172 TELFDLIFDYTFFC  185 (274)
Q Consensus       172 ~~~~D~v~~~~~~~  185 (274)
                      .+..|+++.+....
T Consensus        82 ~g~idilinnag~~   95 (244)
T d1yb1a_          82 IGDVSILVNNAGVV   95 (244)
T ss_dssp             TCCCSEEEECCCCC
T ss_pred             cCCCceeEeecccc
Confidence            24567766654443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.56  E-value=0.014  Score=42.76  Aligned_cols=92  Identities=16%  Similarity=0.093  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024021          106 ALPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY  181 (274)
Q Consensus       106 ~~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~  181 (274)
                      ..++.+||=.|+  |.|..+.++++ .|++|++++-+++..+.+++.-.     +.+ +-..+... ......+|+|+..
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa-----~~~-i~~~~~~~~~~~~~g~D~v~d~   98 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA-----EEA-ATYAEVPERAKAWGGLDLVLEV   98 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC-----SEE-EEGGGHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc-----cee-eehhhhhhhhhccccccccccc
Confidence            356788988874  33566667776 78999999999988888876421     111 11111111 1223569999852


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                        ..    +    .+....++|+|+|.++..-
T Consensus        99 --~G----~----~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          99 --RG----K----EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --SC----T----THHHHHTTEEEEEEEEEC-
T ss_pred             --cc----h----hHHHHHHHHhcCCcEEEEe
Confidence              12    1    1356788999999988753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.49  E-value=0.63  Score=35.83  Aligned_cols=76  Identities=16%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T  172 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-----------~  172 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.......+...++.++.+|+.+...           -
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            456788888887774   34566779999999999999888877765443333468889999876211           1


Q ss_pred             CCeeEEEecc
Q 024021          173 ELFDLIFDYT  182 (274)
Q Consensus       173 ~~~D~v~~~~  182 (274)
                      ++.|+++.+.
T Consensus        82 G~iDiLVnnA   91 (258)
T d1iy8a_          82 GRIDGFFNNA   91 (258)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4577777654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.27  E-value=0.83  Score=35.09  Aligned_cols=61  Identities=21%  Similarity=0.052  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~   68 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSS   68 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCC
Confidence            3567889988887663   345566689999999999999988887776654  468888888865

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.06  E-value=0.59  Score=35.60  Aligned_cols=72  Identities=21%  Similarity=0.250  Sum_probs=51.8

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-------CCCCCe
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-------CPTELF  175 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-------~~~~~~  175 (274)
                      ++.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+..      .++..+.+|+.+.       ..-++.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~i   75 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPV   75 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence            3567889988887763   24555669999999999988776665554      3477888999862       223678


Q ss_pred             eEEEeccc
Q 024021          176 DLIFDYTF  183 (274)
Q Consensus       176 D~v~~~~~  183 (274)
                      |+++.+..
T Consensus        76 DilVnnAg   83 (242)
T d1cyda_          76 DLLVNNAA   83 (242)
T ss_dssp             SEEEECCC
T ss_pred             eEEEECCc
Confidence            99997643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.97  E-value=0.037  Score=40.13  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024021          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF  183 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~  183 (274)
                      .++.+|+=+|+|.-.. +...+. .|++|+.+|.+++.++..+.....     +++....+-... ..-...|+|+..-.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEeee
Confidence            3568999999997544 334443 899999999999999888877643     244444332221 11135799997654


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                      +..-..+  .-+-+++.+.+|||..++
T Consensus       105 ipG~~aP--~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         105 VPGRRAP--ILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CTTSSCC--CCBCHHHHTTSCTTCEEE
T ss_pred             cCCcccC--eeecHHHHhhcCCCcEEE
Confidence            3222111  122367889999999775

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.87  E-value=1.1  Score=32.30  Aligned_cols=89  Identities=11%  Similarity=0.002  Sum_probs=55.4

Q ss_pred             CeEEEEc--CCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC---CCCCCCeeEEE
Q 024021          110 GRALVPG--CGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDLIF  179 (274)
Q Consensus       110 ~~vLDiG--~G~G~~~~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~---~~~~~~~D~v~  179 (274)
                      .+||=.|  .|.|..+.++++ .|+ .|+++.-+++...........      ...+..   |+.+   ...++.+|+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga------d~vi~~~~~~~~~~~~~~~~~GvDvv~  105 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF------DAAVNYKTGNVAEQLREACPGGVDVYF  105 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC------SEEEETTSSCHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc------eEEeeccchhHHHHHHHHhccCceEEE
Confidence            5788866  577888999988 676 577777777665554433311      112221   1211   11235699998


Q ss_pred             ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ..-     -    ...++...++|+++|+++.+-
T Consensus       106 D~v-----G----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         106 DNV-----G----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             ESS-----C----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             ecC-----C----chhHHHHhhhccccccEEEec
Confidence            432     1    135688999999999998753

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.60  E-value=0.6  Score=35.95  Aligned_cols=61  Identities=15%  Similarity=-0.012  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.   .+..|++.|++|+.++.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~   68 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASL   68 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCC
Confidence            3567889988887774   345666699999999999998888877776554  468888888865

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.36  E-value=1.2  Score=33.79  Aligned_cols=58  Identities=26%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .+.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+...     .++.++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~   63 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQ   63 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCC
Confidence            3567888888988773   345666799999999999988777766543     457888888865

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.26  E-value=0.41  Score=34.28  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             CCCCeEEEEcCCcchhH-HHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC--C----CCCCCCeeE
Q 024021          107 LPKGRALVPGCGTGYDV-VAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF--T----WCPTELFDL  177 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~~-~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~--~----~~~~~~~D~  177 (274)
                      .++.+||-+|+|..... ..+++ .| ..++++|.+++.++.+++...       ..++..+-.  +    ......+|+
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-------~~~i~~~~~~~~~~~~~~~~~g~d~  103 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-------DHVVDARRDPVKQVMELTRGRGVNV  103 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-------SEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-------ceeecCcccHHHHHHHhhCCCCceE
Confidence            56689999998765554 45544 45 488999999999998887532       122222111  1    122356999


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      |+..-.-        ...++...+.+++||++++.-.
T Consensus       104 vid~~g~--------~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         104 AMDFVGS--------QATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEESSCC--------HHHHHHGGGGEEEEEEEEECCC
T ss_pred             EEEecCc--------chHHHHHHHHHhCCCEEEEEeC
Confidence            8843221        2356888999999999998653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.23  E-value=1.1  Score=34.18  Aligned_cols=59  Identities=15%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.....   .++.++.+|+.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~   65 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSD   65 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCC
Confidence            457788888876663   23455668999999999999888877766432   468889999875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=1.8  Score=32.94  Aligned_cols=61  Identities=20%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.-   +..|++.|++|+.++.+++.++.+.+.+...+  .++.++.+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~   71 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITS   71 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCC
Confidence            45678888887766632   35566699999999999999888887776654  468889999876

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.15  E-value=1.6  Score=33.68  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=54.6

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCCC-----------
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWCP-----------  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~-----------  171 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+...           
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            456788888887763   3456666999999999999988888877766543 3478999999876211           


Q ss_pred             CCCeeEEEecc
Q 024021          172 TELFDLIFDYT  182 (274)
Q Consensus       172 ~~~~D~v~~~~  182 (274)
                      -++.|+++.+.
T Consensus        82 ~G~iDilVnnA   92 (274)
T d1xhla_          82 FGKIDILVNNA   92 (274)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCceEEEeec
Confidence            13567777654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=1.8  Score=32.87  Aligned_cols=56  Identities=20%  Similarity=0.137  Sum_probs=42.2

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+..      .++.++.+|+.+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~   62 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQ   62 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCC
Confidence            457888999987763   23555668999999999998887776554      347788888865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.95  E-value=0.091  Score=38.53  Aligned_cols=102  Identities=15%  Similarity=0.135  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCCcchh-HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCC--cc-eEEE--EcccCCCC----C----
Q 024021          107 LPKGRALVPGCGTGYD-VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNA--KF-VSFL--KADFFTWC----P----  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~-~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~-~~~~--~~d~~~~~----~----  171 (274)
                      .++.+|+=+|+|.-.. +...+. .|++|+.+|.++..++..+......-..  .. ....  .+......    .    
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            4568999999997554 334443 8999999999999888888765332100  00 0000  00000000    0    


Q ss_pred             -----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024021          172 -----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI  210 (274)
Q Consensus       172 -----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~  210 (274)
                           -...|+|+..-.+..-..+.  -+-+.+.+.+|||..++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~--lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPV--LITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCC--CSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccce--eehHHHHHhcCCCcEEE
Confidence                 12579999764433221111  13367889999999776

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.87  E-value=0.16  Score=36.59  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             CCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024021          109 KGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY  181 (274)
Q Consensus       109 ~~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~D~v~~~  181 (274)
                      +..||=-|+  |.|..+.++++ .|++|+++.-+++-.+.+++.-...     + +-..|...    ....+.+|+|+..
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~-----v-i~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE-----V-ISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSE-----E-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccc-----e-EeccchhchhhhcccCCCceEEEec
Confidence            456877663  45566677777 7999999999988888887764221     2 11122221    2334579998843


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP  215 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  215 (274)
                           +.    ...+....++|+++|++++.-..
T Consensus        98 -----vg----g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          98 -----VG----GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             -----CC----THHHHHHHTTEEEEEEEEECCCS
T ss_pred             -----Cc----HHHHHHHHHHhccCceEEEeecc
Confidence                 22    13467899999999999886533

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=91.48  E-value=0.12  Score=40.99  Aligned_cols=93  Identities=15%  Similarity=0.070  Sum_probs=59.9

Q ss_pred             ceEEEEcccCC---CCCCCCeeEEEeccccccc-----C---h----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024021          158 FVSFLKADFFT---WCPTELFDLIFDYTFFCAI-----E---P----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGG  222 (274)
Q Consensus       158 ~~~~~~~d~~~---~~~~~~~D~v~~~~~~~~~-----~---~----~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~  222 (274)
                      .-.++.+|..+   ..+++++|+|+...++...     +   .    +.+...+..++++|+|+|.+++...........
T Consensus        12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~   91 (320)
T d1booa_          12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP   91 (320)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred             CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchhhcccc
Confidence            35788998876   5678899999999876421     1   0    224677899999999999998866432211000


Q ss_pred             CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024021          223 PPYKVSVSDYEEVLQPMGFQAISIVDNK  250 (274)
Q Consensus       223 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  250 (274)
                      .........+...+...|+.........
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (320)
T d1booa_          92 ARSIYNFRVLIRMIDEVGFFLAEDFYWF  119 (320)
T ss_dssp             EECCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             cccchhHHHHHHHHHhcCceEeeeeecc
Confidence            0111234566677888888766654433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.85  E-value=0.32  Score=35.17  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=56.6

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~D~  177 (274)
                      ..++.+|+=+|||..... ..+++ .| .+|+++|.+++.++.|++.-...-    ++....|...     ......+|+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~----in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATEC----ISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEE----ECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEE----ECccccchHHHHHHHHhccccceE
Confidence            355689999999865444 34444 66 489999999999999998853210    1111111110     112356898


Q ss_pred             EEecccccccChhHHHHHHHHHH-hcccCCcEEEEEEcc
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIK-DFLKPDGELITLMFP  215 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~-~~L~pgG~~~~~~~~  215 (274)
                      ++..-.-        ...+.... .+++.+|.+++.-..
T Consensus       103 vi~~~g~--------~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         103 TFEVIGH--------LETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             EEECSCC--------HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             EEEeCCc--------hHHHHHHHHHhhcCCeEEEEEEcc
Confidence            8842221        12233444 444555888886543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.80  E-value=1.4  Score=33.63  Aligned_cols=60  Identities=18%  Similarity=0.056  Sum_probs=44.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-CCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.... .+  .++.++.+|+.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~   66 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSN   66 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCC
Confidence            557888999987763   3456666999999999998887776654432 22  458888999875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.47  E-value=1.9  Score=32.53  Aligned_cols=55  Identities=18%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+..       +..++.+|+.+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~   60 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVAD   60 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCC
Confidence            4567888888877632   3455568999999999998877766543       36677888765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.46  E-value=2  Score=32.78  Aligned_cols=58  Identities=12%  Similarity=0.080  Sum_probs=43.3

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+..   +  .++.++.+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~   62 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTI   62 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEcccCC
Confidence            3567889999988773   34566669999999999988776655443   2  468889999875

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.33  E-value=1.8  Score=33.01  Aligned_cols=57  Identities=18%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+...     .++.++.+|+.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~~Dvt~   62 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG-----PAACAIALDVTD   62 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEeeCCC
Confidence            456788888877763   345556689999999999887777665542     457888899875

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.20  E-value=2  Score=32.44  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..+++.|++|+.+|.+++.++...+...     .+..++.+|+.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~   61 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTD   61 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecC
Confidence            456778888877663   334556689999999999988877766553     346777888764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.15  Score=37.18  Aligned_cols=89  Identities=17%  Similarity=0.157  Sum_probs=57.6

Q ss_pred             CeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEeccc
Q 024021          110 GRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFDYTF  183 (274)
Q Consensus       110 ~~vLDiG~--G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~D~v~~~~~  183 (274)
                      .+||=.|+  |.|..+.++++ .|++|+++.-+++..+.+++.-.       ..++.-+   ..+......+|.|+.   
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa-------d~vi~~~~~~~~~~l~~~~~~~vvD---  102 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA-------SRVLPRDEFAESRPLEKQVWAGAID---  102 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE-------EEEEEGGGSSSCCSSCCCCEEEEEE---
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc-------ccccccccHHHHHHHHhhcCCeeEE---
Confidence            47776553  24455667766 89999999999998888876532       1222222   222333456888762   


Q ss_pred             ccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                        .+.    ...+....+.|+++|+++.+-.
T Consensus       103 --~Vg----g~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         103 --TVG----DKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             --SSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             --Ecc----hHHHHHHHHHhccccceEeecc
Confidence              222    2356889999999999988653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=89.86  E-value=0.81  Score=32.67  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             CeEEEEcCCcchhHH--HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE------EEcccCCCCCCCCeeEEEec
Q 024021          110 GRALVPGCGTGYDVV--AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSF------LKADFFTWCPTELFDLIFDY  181 (274)
Q Consensus       110 ~~vLDiG~G~G~~~~--~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~------~~~d~~~~~~~~~~D~v~~~  181 (274)
                      ++|-=+|+|.-..+.  .|++.|.+|+.+|.+++.++..++........+....      ...|..+..  ..+|+|+..
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh--cCCCEEEEE
Confidence            467778887765543  4455899999999999988887765321100001111      111111111  357988853


Q ss_pred             ccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024021          182 TFFCAIEPEMRAAWAQKIKDFLKPDGELIT  211 (274)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~  211 (274)
                           .+......+++++...++++..+++
T Consensus        80 -----v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 -----VPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             -----SCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -----EchhHHHHHHHHhhhccCCCCEEEE
Confidence                 2334456788999999999886654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.60  E-value=0.61  Score=33.50  Aligned_cols=99  Identities=13%  Similarity=-0.031  Sum_probs=57.8

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC--C---CCCCCCeeE
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF--T---WCPTELFDL  177 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~--~---~~~~~~~D~  177 (274)
                      ..++.+||=+|||..... ..+++ .|+ +|+++|.+++.++.+++.-...    -++....|..  .   ....+.+|+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~----~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE----CLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcE----EEcCCCchhHHHHHHHHhcCCCCcE
Confidence            456789999999865544 34444 565 8999999999999998753211    0111112211  0   112346898


Q ss_pred             EEecccccccChhHHHHHHHHHHhcccC-CcEEEEEEccC
Q 024021          178 IFDYTFFCAIEPEMRAAWAQKIKDFLKP-DGELITLMFPI  216 (274)
Q Consensus       178 v~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~~~~~~~~~  216 (274)
                      |+..-..        ...+......+++ +|.+++.-...
T Consensus       101 vid~~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2         101 AVECAGR--------IETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             EEECSCC--------HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             EEEcCCC--------chHHHHHHHHHHHhcCceEEEEEec
Confidence            8843221        1334556655654 68888766433

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.42  E-value=1.3  Score=33.90  Aligned_cols=57  Identities=12%  Similarity=-0.011  Sum_probs=42.0

Q ss_pred             CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.+|=-|++.|.   .+..|++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~   62 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRS   62 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCC
Confidence            445666766553   234555689999999999999988887776654  468889999865

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=3.4  Score=32.18  Aligned_cols=63  Identities=19%  Similarity=0.087  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcC---CCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~  168 (274)
                      .++++++|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...   ....++.++.+|+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~   77 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN   77 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC
Confidence            35678889888777633   3455568999999999998887776654322   112468888888875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.02  E-value=0.3  Score=35.83  Aligned_cols=75  Identities=12%  Similarity=-0.074  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024021          106 ALPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI  178 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~D~v  178 (274)
                      .+++++||=.|++.|.-   +..+++.|++|+.++.+++.++...+.+...   .++.+...|+.+.    ..-+..|++
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCee
Confidence            56789999998766532   3455668999999999998888877766543   2355666776651    112568999


Q ss_pred             Eeccc
Q 024021          179 FDYTF  183 (274)
Q Consensus       179 ~~~~~  183 (274)
                      +.+..
T Consensus        97 in~Ag  101 (191)
T d1luaa1          97 FTAGA  101 (191)
T ss_dssp             EECCC
T ss_pred             eecCc
Confidence            97754

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.95  E-value=1.3  Score=35.40  Aligned_cols=115  Identities=11%  Similarity=0.186  Sum_probs=73.6

Q ss_pred             HHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC--------------------
Q 024021           96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL--------------------  153 (274)
Q Consensus        96 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--------------------  153 (274)
                      ..+.+++..  .+...|+-+|||.=.....+..  ++..++=+|+ |+.++.=++.+...                    
T Consensus        86 ~~v~~Fl~~--~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~  162 (328)
T d1rjda_          86 AAILEFLVA--NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFL  162 (328)
T ss_dssp             HHHHHHHHH--CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred             HHHHHHHHH--CCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence            335555543  2346899999998777766654  4445666666 44443322222110                    


Q ss_pred             CCCcceEEEEcccCCC----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024021          154 PNAKFVSFLKADFFTW----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF  214 (274)
Q Consensus       154 ~~~~~~~~~~~d~~~~----------~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  214 (274)
                      ..+++.+++.+|+.+.          ......-++++=.++.|++++....+++.+.+... ++.+++.+.
T Consensus       163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~  232 (328)
T d1rjda_         163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDP  232 (328)
T ss_dssp             EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEE
T ss_pred             CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEecc
Confidence            0135688899998861          12234568888899999999988999998888775 566666554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.83  E-value=0.41  Score=39.54  Aligned_cols=46  Identities=11%  Similarity=0.123  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcC
Q 024021          108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSL  153 (274)
Q Consensus       108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~  153 (274)
                      ++..++|+|+-.|..+..++.    ...+|+++|++|...+..++++..+
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            457999999999988876654    3459999999999999999887654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.82  Score=34.98  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCC
Q 024021          109 KGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTEL  174 (274)
Q Consensus       109 ~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~  174 (274)
                      ++.+|=-|++.|.-   +..+++.|++|+.+|.+++.++.+...........++.++.+|+.+..           .-++
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            56778888776632   345556899999999999988888777655433357899999998721           1257


Q ss_pred             eeEEEecccccc
Q 024021          175 FDLIFDYTFFCA  186 (274)
Q Consensus       175 ~D~v~~~~~~~~  186 (274)
                      .|+++.+.....
T Consensus        83 iDilVnnAg~~~   94 (254)
T d2gdza1          83 LDILVNNAGVNN   94 (254)
T ss_dssp             CCEEEECCCCCC
T ss_pred             cCeecccccccc
Confidence            899998765544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=0.85  Score=35.26  Aligned_cols=103  Identities=14%  Similarity=0.044  Sum_probs=68.1

Q ss_pred             CCeE-EEEcCCcchh---HHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024021          109 KGRA-LVPGCGTGYD---VVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT  172 (274)
Q Consensus       109 ~~~v-LDiG~G~G~~---~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~  172 (274)
                      +++| |=-|++.|.-   +..|++ .|.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..           ..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4566 4445554431   234454 47899999999999988888876655  46889999998721           12


Q ss_pred             CCeeEEEeccccccc---C---hhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024021          173 ELFDLIFDYTFFCAI---E---PEMR-----------AAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       173 ~~~D~v~~~~~~~~~---~---~~~~-----------~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      ++.|+++.+..+...   .   ++.+           ..+.+.+...|+++|.++.+.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            579999988654321   1   1121           234566778888899877654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.60  E-value=2.4  Score=32.20  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.+|.+++.++...+...     .+..++.+|+.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~   63 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSS   63 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEeecCC
Confidence            456788888876662   334556689999999999988877766542     346777788765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.13  E-value=3.6  Score=31.12  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=48.3

Q ss_pred             EEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCeeE
Q 024021          112 ALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELFDL  177 (274)
Q Consensus       112 vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~D~  177 (274)
                      +|=-|++.|.-   +..+++.|++|+.+|.+++.++...+.+...+  .++.++.+|+.+..           .-++.|+
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            46667665532   34555689999999999999888887776654  46888999997621           1246777


Q ss_pred             EEecc
Q 024021          178 IFDYT  182 (274)
Q Consensus       178 v~~~~  182 (274)
                      ++.+.
T Consensus        82 lVnnA   86 (255)
T d1gega_          82 IVNNA   86 (255)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            77653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.96  E-value=2.1  Score=32.62  Aligned_cols=61  Identities=21%  Similarity=0.110  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEE-eCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGL-EISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      .+.++++|=.|++.|   ..+..|++.|++|+.. .-+++..+.+.+.+...+  .++.++.+|+.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~   67 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISK   67 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCC
Confidence            356788897776655   3445566689988875 566777777777776655  468889999875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=87.58  E-value=3.3  Score=31.26  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=-|++.|.   .+..|++.|++|+.+|.+++..+.++..        +..++.+|+.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~   59 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQVDLED   59 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH--------TCEEEECCTTC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCeEEEEeCCC
Confidence            457888888877663   2345566899999999998876655432        24567777765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.53  E-value=3.4  Score=31.01  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +.++++|=.|++.|.-   +..|++.|++|+..+.+.+.++...+..   +  .++.++.+|+.+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dls~   62 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---E--AEAIAVVADVSD   62 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---C--SSEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CceEEEEecCCC
Confidence            5678888888887633   3455569999999999998766554433   2  457888888865

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.23  E-value=2.1  Score=32.54  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=42.4

Q ss_pred             CCCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHh-hcCCCCcceEEEEcccCC
Q 024021          106 ALPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELS-SSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~  168 (274)
                      .+.++++|=-|++.|.   .+..|++.|++|+.+|.+++.++.+.+.. ...+  .++.++.+|+.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~   70 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSN   70 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCC
Confidence            3567888888877663   34556668999999999887665554443 2222  458888999875

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.20  E-value=3.9  Score=31.18  Aligned_cols=60  Identities=17%  Similarity=0.076  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.++.+ ++.++...+.+...+  .++.++.+|+.+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~   79 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGV   79 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCC
Confidence            557888888887763   445666699999999986 455666665555554  457888888765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.99  E-value=4.9  Score=30.28  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=40.6

Q ss_pred             CCCeEEEEcCCcch---hHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC
Q 024021          108 PKGRALVPGCGTGY---DVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF  167 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  167 (274)
                      .++.+|=-|++.|.   .+..|++   .|++|+.++.+++.++.+.+.+...+...++.++.+|+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs   70 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLG   70 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCC
Confidence            34555555666653   2344443   688999999999998888776654433346888888875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.94  E-value=0.97  Score=34.93  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~-----------~  171 (274)
                      ++++++|=.|++.|.   .+..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            456788888877663   3455666999999999999999988887766543 346899999998721           1


Q ss_pred             CCCeeEEEecc
Q 024021          172 TELFDLIFDYT  182 (274)
Q Consensus       172 ~~~~D~v~~~~  182 (274)
                      -++.|+++.+.
T Consensus        83 ~g~iDilvnnA   93 (272)
T d1xkqa_          83 FGKIDVLVNNA   93 (272)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCceEEEeCC
Confidence            24789999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.75  E-value=1.9  Score=30.49  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcCCcchhH-HHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cccCC-------CCCCCC
Q 024021          106 ALPKGRALVPGCGTGYDV-VAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFT-------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G~~~-~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~-------~~~~~~  174 (274)
                      ..++.+||=+|+|.+... ..+++ .+ .+|+++|.+++-.+.+++.-..       ..+. .+..+       ....+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYKKPIQEVLTEMSNGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCchhHHHHHHHHHhcCC
Confidence            456689999999754433 33333 55 5999999999999998876421       1121 11111       122357


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCC-cEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~  213 (274)
                      +|+|+......        ..++.....++++ |.+++..
T Consensus        99 ~D~vid~~G~~--------~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          99 VDFSFEVIGRL--------DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             BSEEEECSCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred             CCEEEecCCch--------hHHHHHHHHHhcCCcceEEec
Confidence            99998543322        2345666777776 4555543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.90  E-value=4.1  Score=30.61  Aligned_cols=58  Identities=19%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++.+|=-|++.|.   .+..|++.|++|+.+|.++..  .+.......+  .++.++.+|+.+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g--~~~~~~~~Dvs~   63 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLG--RRVLTVKCDVSQ   63 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTT--CCEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcC--CcEEEEEeeCCC
Confidence            456788888876663   345556689999999987642  2222333333  468889999876

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.67  E-value=1.7  Score=33.33  Aligned_cols=60  Identities=18%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++++++|=-|++.|.   .+..|++.|++|+.++.+. ..++...+.+...+  .++.++.+|+.+
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~   68 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTV   68 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence            557788888887763   3355666899999999875 45665555555544  468888999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.57  E-value=1.3  Score=33.99  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCCCC-----------C
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~-----------~  171 (274)
                      ++++.+|=-|++.|.-   +..|++.|++|+.+|.+++.++.+.+.+...+. ..++.++.+|+.+..           .
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            4567778888776632   345566899999999999999888877665543 346899999998621           1


Q ss_pred             CCCeeEEEeccc
Q 024021          172 TELFDLIFDYTF  183 (274)
Q Consensus       172 ~~~~D~v~~~~~  183 (274)
                      -++.|+++.+..
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            257899987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.76  E-value=0.84  Score=29.32  Aligned_cols=66  Identities=11%  Similarity=0.060  Sum_probs=39.0

Q ss_pred             CeEEEEc-CCcchh--HHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024021          110 GRALVPG-CGTGYD--VVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       110 ~~vLDiG-~G~G~~--~~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  185 (274)
                      .+|.=+| ||+|-.  +..|.+.|+.|+|.|.... .....    ...+    +.+..+...+..  ...|+|+.+..+.
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L----~~~G----i~v~~g~~~~~i--~~~d~vV~S~AI~   78 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRL----AQAG----AKIYIGHAEEHI--EGASVVVVSSAIK   78 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHH----HHTT----CEEEESCCGGGG--TTCSEEEECTTSC
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHH----HHCC----CeEEECCccccC--CCCCEEEECCCcC
Confidence            5677775 445533  4566669999999998632 22222    2232    555555443332  3479888777654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=84.67  E-value=0.72  Score=33.52  Aligned_cols=94  Identities=10%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCC---cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCC---------C
Q 024021          107 LPKGRALVPGCG---TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTW---------C  170 (274)
Q Consensus       107 ~~~~~vLDiG~G---~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~---------~  170 (274)
                      .++.+||=+.+|   .|..+.++++ .|++++++--++...+...+.+...+-   -..+..   |..+.         .
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa---d~vi~~~~~~~~~~~~~v~~~~~~  103 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA---TQVITEDQNNSREFGPTIKEWIKQ  103 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC---SEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc---cEEEeccccchhHHHHHHHHHHhh
Confidence            345677777433   3556667776 788888875444333333333333221   112221   22111         0


Q ss_pred             CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024021          171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL  212 (274)
Q Consensus       171 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~  212 (274)
                      ....+|+|+..     +..    ..+....++|+++|.++..
T Consensus       104 ~g~~vdvv~D~-----vg~----~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2         104 SGGEAKLALNC-----VGG----KSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HTCCEEEEEES-----SCH----HHHHHHHHTSCTTCEEEEC
T ss_pred             ccCCceEEEEC-----CCc----chhhhhhhhhcCCcEEEEE
Confidence            13468998832     222    2346778999999998865

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.35  E-value=1.7  Score=30.94  Aligned_cols=118  Identities=11%  Similarity=0.017  Sum_probs=65.1

Q ss_pred             EEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-c-cCCCCCCCCeeEEEeccccc
Q 024021          112 ALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D-FFTWCPTELFDLIFDYTFFC  185 (274)
Q Consensus       112 vLDiG~G~G~~~~----~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d-~~~~~~~~~~D~v~~~~~~~  185 (274)
                      |==||+  |.++.    .|++.|++|++.|.+++..+...+.........+...... | +.....  ..+.+....   
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---   76 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLK--KPRKALILV---   76 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBC--SSCEEEECC---
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcc--cceEEEEee---
Confidence            334544  44544    4445899999999999988877666543322222221111 0 111111  122222111   


Q ss_pred             ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                       .+.......+..+...+++|..++-..  .       ...-...++.+.++..|+..++.
T Consensus        77 -~~~~~~~~~~~~~~~~~~~~~iii~~s--t-------~~~~~~~~~~~~l~~~~~~~lda  127 (178)
T d1pgja2          77 -QAGAATDSTIEQLKKVFEKGDILVDTG--N-------AHFKDQGRRAQQLEAAGLRFLGM  127 (178)
T ss_dssp             -CCSHHHHHHHHHHHHHCCTTCEEEECC--C-------CCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             -cCcchhhhhhhhhhhhccccceecccC--c-------cchhHHHHHHHHHhhcceeEecc
Confidence             122445677788999999988765432  1       11113567778888888887765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.28  E-value=3.7  Score=28.75  Aligned_cols=93  Identities=14%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             CCCCCeEEEEcCCcc-hhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-------CCCCCC
Q 024021          106 ALPKGRALVPGCGTG-YDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT-------WCPTEL  174 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G-~~~~~l~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-------~~~~~~  174 (274)
                      ..++.+||=.|||.. ..+.++++ .| ..|+++|.+++..+.+++.-..       .++.. +-.+       ....+.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            456789998888732 33344444 55 4899999999999999876421       12211 1111       112356


Q ss_pred             eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024021          175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM  213 (274)
Q Consensus       175 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  213 (274)
                      +|+|+..-.     .   ...++....++++||.+++..
T Consensus        99 ~D~vid~~G-----~---~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          99 VDYSFECIG-----N---VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             BSEEEECSC-----C---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEeeecCC-----C---HHHHHHHHHhhcCCceeEEEE
Confidence            999995322     1   235677888999998776654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=3.4  Score=31.03  Aligned_cols=75  Identities=21%  Similarity=0.072  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCc--c---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------CC
Q 024021          107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------WC  170 (274)
Q Consensus       107 ~~~~~vLDiG~G~--G---~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----------~~  170 (274)
                      +.++++|=.|++.  |   ..+..|++.|++|+..+.+++..+.+.+.....+   +......|..+           ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcC---CcceeecccchHHHHHHHHHHhhh
Confidence            4578889888765  5   2456777799999999999887777766655443   35566666654           12


Q ss_pred             CCCCeeEEEecccc
Q 024021          171 PTELFDLIFDYTFF  184 (274)
Q Consensus       171 ~~~~~D~v~~~~~~  184 (274)
                      ..+..|+.+.+..+
T Consensus        80 ~~~~~d~~v~~a~~   93 (258)
T d1qsga_          80 VWPKFDGFVHSIGF   93 (258)
T ss_dssp             TCSSEEEEEECCCC
T ss_pred             cccccceEEEeecc
Confidence            23568888876433

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=82.63  E-value=3.8  Score=31.02  Aligned_cols=60  Identities=20%  Similarity=0.114  Sum_probs=40.3

Q ss_pred             CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC-hHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEIS-DIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      +++++|=-|++.|.   .+..|++.|++|+.++.+ +..++.+........ ..++.++.+|+.+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~   66 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSK   66 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence            46778877777664   344566699999999986 455666555443221 1468888999876

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.01  E-value=0.73  Score=36.22  Aligned_cols=71  Identities=18%  Similarity=0.151  Sum_probs=42.7

Q ss_pred             eEEEEcCCcchhHHHhhC----CCCeEEEEe-CChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEEE
Q 024021          111 RALVPGCGTGYDVVAMAS----PERYVVGLE-ISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLIF  179 (274)
Q Consensus       111 ~vLDiG~G~G~~~~~l~~----~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~D~v~  179 (274)
                      +||=. .|+|..+..+.+    .|.+|+++| ++..............   .+++++.+|+.+.      ....++|.|+
T Consensus         2 KILVT-GatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLLIT-GGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEEEE-CCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence            56644 467888765544    899999998 3322222111222222   4699999999872      1123579998


Q ss_pred             eccccc
Q 024021          180 DYTFFC  185 (274)
Q Consensus       180 ~~~~~~  185 (274)
                      -.....
T Consensus        78 h~aa~~   83 (338)
T d1orra_          78 HLAGQV   83 (338)
T ss_dssp             ECCCCC
T ss_pred             eecccc
Confidence            765543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.88  E-value=3.6  Score=30.83  Aligned_cols=56  Identities=21%  Similarity=0.346  Sum_probs=37.9

Q ss_pred             CeEEEEcCCcchh---HHHhh---CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024021          110 GRALVPGCGTGYD---VVAMA---SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT  168 (274)
Q Consensus       110 ~~vLDiG~G~G~~---~~~l~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  168 (274)
                      ++||=-|++.|.-   +..|+   +.|++|+.++.+++.++..++.....   .++.++.+|+.+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~   64 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRN   64 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEecc
Confidence            4688778776632   22232   47889999999887776665544433   468889999865

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.30  E-value=1.6  Score=33.79  Aligned_cols=78  Identities=17%  Similarity=0.044  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEcCCcc---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024021          106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P  171 (274)
Q Consensus       106 ~~~~~~vLDiG~G~G---~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  171 (274)
                      .++++++|=-|++.|   ..+..|++.|++|+.+|.++..++.+.+.+.... ..++.++.+|+.+..           .
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            456788999988776   3345556699999999999988776665543221 146888999998721           1


Q ss_pred             CCCeeEEEecccc
Q 024021          172 TELFDLIFDYTFF  184 (274)
Q Consensus       172 ~~~~D~v~~~~~~  184 (274)
                      .+..|+++.+...
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            3578999876543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.33  E-value=4.3  Score=30.18  Aligned_cols=65  Identities=11%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024021          107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI  178 (274)
Q Consensus       107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~D~v  178 (274)
                      ++++++|=-|++.|.-   +..|++.|++|+.+|.+++.++..           ..+++.+|+.+.     ..-++.|++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-----------~~~~~~~Dv~~~~~~~~~~~g~iD~l   70 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-----------GHRYVVCDLRKDLDLLFEKVKEVDIL   70 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-----------CSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-----------CCcEEEcchHHHHHHHHHHhCCCcEE
Confidence            4567888888776632   345566899999999998755432           245677888652     122578998


Q ss_pred             Eecc
Q 024021          179 FDYT  182 (274)
Q Consensus       179 ~~~~  182 (274)
                      +.+.
T Consensus        71 VnnA   74 (234)
T d1o5ia_          71 VLNA   74 (234)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            8764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=80.22  E-value=2.3  Score=30.26  Aligned_cols=116  Identities=9%  Similarity=-0.111  Sum_probs=64.8

Q ss_pred             EEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccccc
Q 024021          112 ALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA  186 (274)
Q Consensus       112 vLDiG~G~G~~~~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~  186 (274)
                      |==||+  |..+..++    +.|++|++.|.+++.++...+......   ... ......+. ......|.++..-.   
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~---~~~-~a~~~~~~~~~~~~~~~ii~~~~---   75 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGT---KVL-GAHSLEEMVSKLKKPRRIILLVK---   75 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTS---SCE-ECSSHHHHHHHBCSSCEEEECSC---
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccc---ccc-chhhhhhhhhhhcccceEEEecC---
Confidence            444555  55554444    489999999999998887766532211   011 11111110 11123466664221   


Q ss_pred             cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024021          187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI  246 (274)
Q Consensus       187 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  246 (274)
                       +.+....++..+...+++|.+++-..  ..       ......++.+.+++.|...++.
T Consensus        76 -~~~~v~~v~~~l~~~~~~g~iiid~s--T~-------~~~~~~~~~~~~~~~g~~~lda  125 (176)
T d2pgda2          76 -AGQAVDNFIEKLVPLLDIGDIIIDGG--NS-------EYRDTMRRCRDLKDKGILFVGS  125 (176)
T ss_dssp             -TTHHHHHHHHHHHHHCCTTCEEEECS--CC-------CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -chHHHHHHHHHHHhccccCcEEEecC--cc-------hhHHHHHHHHHHHhcCCceecc
Confidence             22455667888999999887554432  11       1113467777888888887764