Citrus Sinensis ID: 024038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTSDP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEEEEEccEEEEccccccccccEEEEEEEEccccccccccEEEEEEEEccccccccEEEEccccEEEEccEEEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEccEEEcccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHcccccccccccccccccccccccccccccccccEEccEEEEEEEEEEcEEEEcccccccccccEEEEEEEccccccHHHHEEEEEEEEccccccccEEEEcccEEEEEcccEEEEEEEEEEEEcccccccEEEEEEEEEccccccccccccccEEEEEEcEEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccc
Coil and Loop (DISEMBL)
mtnsssskkhgpgqpeesgptlklqrikmskpeeAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKaseyqshkwTVYVRGATNEDLGVVIKRAVFQLhssfnnptravesppfelsesgwgEFEIAITLYFHadvcdkplnlyhhlklypedesgsmstkkpvvvesydeivfpepsdsflarvqnhpavtlprlpvgftlpppvpiedtskrkrgdtkdhplaQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISlidgqqqqlrstsdp
Flexible Loop (DISEMBL)
mtnsssskkhgpgqpeesgptlklqrikmskpeeaekknlnkklkdveisIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHssfnnptravesppFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLypedesgsmstKKPVVVESYDEIVFPEPSDSFLARVQNHPAvtlprlpvgftlpppvpiedtskrkrgdtKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQIslidgqqqqlrstsdp
Low Complexity Region (SEG)
MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEkknlnkklkDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADEllqlaaarqqvqaHIAKLKRQISLIDGQQQQLRSTSDP
Disordered region (IsUnstruct)
*******************************************LKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN***********ELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP************VVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTL*********************LAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISL**************
Disordered Region (DISOPRED)
***********************************************EISIPIVYGNVAFWLGK*ASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPED************VESYDEIVFPEPSDSFL******************************************************LLQLAAA************************L******
Disordered Region (DISEMBL)
*********************LKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPE**********PVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLID************
Disordered Region (DISPRO)
****************************************NKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTL***************************DHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQ*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADExxxxxxxxxxxxxxxxxxxxxISLIDGQQQQLRSTSDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q755P0	208	Protein AF-9 homolog OS=A	yes	no	0.556	0.730	0.439	1e-33
P53930	226	Protein AF-9 homolog OS=S	yes	no	0.564	0.681	0.397	4e-31
Q6FXM4	221	Protein AF-9 homolog OS=C	yes	no	0.556	0.687	0.372	1e-29
Q6CIV8	220	Protein AF-9 homolog OS=K	yes	no	0.560	0.695	0.408	3e-29
Q10319	217	Protein AF-9 homolog OS=S	yes	no	0.736	0.926	0.350	5e-29
O95619	227	YEATS domain-containing p	yes	no	0.487	0.585	0.463	2e-26
Q9CR11	227	YEATS domain-containing p	yes	no	0.487	0.585	0.463	2e-26
Q5BC71	275	Protein AF-9 homolog OS=E	yes	no	0.509	0.505	0.417	1e-25
Q4WPM8	252	Protein AF-9 homolog OS=N	yes	no	0.542	0.587	0.374	2e-23
Q6CF24	202	Protein AF-9 homolog OS=Y	yes	no	0.593	0.801	0.325	9e-22

>sp|Q755P0|AF9_ASHGO Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 5/157 (3%)

Query: 42  KKLKDVEISIPIVYGNVAFWLGKK----ASEYQSHKWTVYVRGATNEDLGVVIKRAVFQL 97
           K++K + ++ PIVYGN A  +G      A    +H WT++VRG   ED+   IK+ VF+L
Sbjct: 7   KRIKTLSVARPIVYGNTAKKMGDVRPAIAPSEHTHMWTIFVRGPQGEDISYFIKKVVFKL 66

Query: 98  HSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP-EDESGS 156
           H ++ NP R V++PPFEL+E+GWGEFEI + ++F  +  +K LN YHHL+L+P  +E G 
Sbjct: 67  HETYPNPVRVVDAPPFELTETGWGEFEINVKVHFVDEANEKMLNFYHHLRLHPYTEEDGR 126

Query: 157 MSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLP 193
            S    V    YDEIVF EP+++F A++   P   LP
Sbjct: 127 RSDGDEVSSVFYDEIVFNEPNEAFFAKMIEQPGNLLP 163

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P53930|AF9_YEAST Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 102/171 (59%), Gaps = 17/171 (9%)

Query: 40  LNKKLKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVF 95
           ++K++K + +S PI+YGN A  +G      A    +H WT++VRG  NED+   IK+ VF
Sbjct: 5   ISKRIKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVF 64

Query: 96  QLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP----- 150
           +LH ++ NP R++E+PPFEL+E+GWGEF+I I +YF  +  +K LN YH L+L+P     
Sbjct: 65  KLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPV 124

Query: 151 -------EDESGSMSTKKPVVVESY-DEIVFPEPSDSFLARVQNHPAVTLP 193
                  E  +   ++K   V   Y DEIVF EP++ F   + + P   LP
Sbjct: 125 PNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLP 175

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FXM4|AF9_CANGA Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 17/169 (10%)

Query: 42  KKLKDVEISIPIVYGNVAFWLGKK----ASEYQSHKWTVYVRGATNEDLGVVIKRAVFQL 97
           K++K + +S  ++YGN A  +G+     A    +H WT++VR  T +D+   IK+ VF+L
Sbjct: 7   KRIKTLSVSRAVIYGNTAKKIGENRPPNAPSEHTHLWTIFVRSPTGDDISYFIKKVVFKL 66

Query: 98  HSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP------- 150
           H ++ NP R +E+PPFEL+E+GWGEF+I I +YF  +  +K +N YH L+L+P       
Sbjct: 67  HETYPNPVRTIEAPPFELTETGWGEFDINIKIYFVEESNEKFINFYHRLRLHPYVNVNPP 126

Query: 151 ------EDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLP 193
                 ++E+G+ +T   +    YDEIVF EP + F   + + P   LP
Sbjct: 127 MSTEVKKEETGNATTSDEISSIFYDEIVFNEPYEDFFKILVSKPGNLLP 175

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6CIV8|AF9_KLULA Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 101/169 (59%), Gaps = 16/169 (9%)

Query: 40  LNKKLKDVEISIPIVYGNVAFWLGKK----ASEYQSHKWTVYVRGATNEDLGVVIKRAVF 95
           + K++K + ++ PI+YGN A  +G      A +  +H WT++VR    ED+   IK+ VF
Sbjct: 6   VTKRIKTLSVTRPIIYGNTAKKMGDNIPPNAPKDHTHLWTIFVRDPRGEDISYFIKKVVF 65

Query: 96  QLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCD-KPLNLYHHLKLYP---- 150
           +LH ++ NP R +E+PPFEL+E+GWGEFEI I +YF ADV + K LN YHHL+L+P    
Sbjct: 66  KLHETYPNPVRVIEAPPFELTETGWGEFEINIKIYF-ADVSNEKMLNFYHHLRLHPYINP 124

Query: 151 ---EDESGSMSTKKP---VVVESYDEIVFPEPSDSFLARVQNHPAVTLP 193
              E E  +  ++ P   V    +DEIVF EP + F   + + P    P
Sbjct: 125 ETKEIERSNDESEVPEDEVKAVYFDEIVFNEPVEQFFQLLMSKPGNLFP 173

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q10319|AF9_SCHPO Protein AF-9 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yaf9 PE=3 SV=1

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 118/231 (51%), Gaps = 30/231 (12%)

Query: 41  NKKLKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQ 96
           N ++   +IS PI+ GN A  L K    KA    +H W ++V G   ED+   +++ VF+
Sbjct: 4   NTRVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFK 63

Query: 97  LHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGS 156
           LH ++NNPTR +ESPPFE+ E+GWGEF+I + ++F  +  +K L  YHHLKL+P      
Sbjct: 64  LHDTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPYGPRME 123

Query: 157 MSTKKPVVVES--YDEIVFPEPSD-SFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKR 213
                  +VES  Y+EIVF EP + ++    QN                   PI D    
Sbjct: 124 EMKASGGLVESVQYEEIVFNEPFEYTYKLLSQN-------------------PIGDGHGL 164

Query: 214 KRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQ 264
                 DHP +Q      E DE  +L  A Q+V+  I   K+Q+  + GQ+
Sbjct: 165 AVESEPDHPFSQQL----EQDEADKLDFAIQEVKKTIEMYKQQVQSLQGQK 211

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O95619|YETS4_HUMAN YEATS domain-containing protein 4 OS=Homo sapiens GN=YEATS4 PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 3/136 (2%)

Query: 43  KLKDVEISIPIVYGNVAFWLGKKASE-YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSF 101
           ++K V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 102 NNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKK 161
            NP R V  PP+E++E+GWGE    I   F  D  ++P+ LYH LKL+  D + +M  KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLFQSD-TNAMLGKK 132

Query: 162 PVVVESYDEIVFPEPS 177
            VV E YDE++F +P+
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q9CR11|YETS4_MOUSE YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 88/136 (64%), Gaps = 3/136 (2%)

Query: 43  KLKDVEISIPIVYGNVAFWLGKKASE-YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSF 101
           ++K V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+
Sbjct: 15  RVKGVTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESY 74

Query: 102 NNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKK 161
            NP R V  PP+E++E+GWGE    I   F  D  ++P+ LYH LKL+  D + +M  KK
Sbjct: 75  GNPLRVVTKPPYEITETGWGE-FEIIIKIFFIDPNERPVTLYHLLKLFQSD-TNAMLGKK 132

Query: 162 PVVVESYDEIVFPEPS 177
            VV E YDE++F +P+
Sbjct: 133 TVVSEFYDEMIFQDPT 148

Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage.

Mus musculus (taxid: 10090)

>sp|Q5BC71|AF9_EMENI Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 7/146 (4%)

Query: 42  KKLKDVEISIPIVYGNVA--FWLGKKASEYQS---HKWTVYVRGATNEDLGVVIKRAVFQ 96
           K+++ V I  P V+G+ A  F    K S   S   H+W VYVRG   ED+   IK+  F+
Sbjct: 8   KRVRGVSIFRPFVFGSEAQPFDPATKPSNVSSDHTHQWRVYVRGVNGEDISYWIKKVQFK 67

Query: 97  LHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPE--DES 154
           LH ++    R VE PP+E++E+GWGEFEI I +YF  +  +KP  L+H LKL+P   D  
Sbjct: 68  LHETYVQNVRTVEHPPYEVTETGWGEFEIQIKIYFVPESMEKPQTLWHSLKLHPYGPDAE 127

Query: 155 GSMSTKKPVVVESYDEIVFPEPSDSF 180
           G    ++ VV ++Y+E+VF EP + F
Sbjct: 128 GKKERREVVVSQNYEEVVFNEPVEQF 153

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4WPM8|AF9_ASPFU Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 7/155 (4%)

Query: 42  KKLKDVEISIPIVYGNVA--FWLGKKASEY---QSHKWTVYVRGATNEDLGVVIKRAVFQ 96
           K+++ V I  P V+G+ A  F   KK        +H+W V+V+G  +ED+   +K+  F+
Sbjct: 8   KRVRGVSIFRPFVFGSEARPFDPEKKPPHVPADHTHQWRVFVKGVNDEDISYWLKKVQFK 67

Query: 97  LHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGS 156
           LH ++    R +E PPFE++E+GWGEFEI I LYF  +  +KP  L+H LKL+P      
Sbjct: 68  LHETYAQNVRTIEQPPFEVTETGWGEFEIQIKLYFVPESGEKPQTLWHSLKLHPFGPGAE 127

Query: 157 MSTKKPVVV--ESYDEIVFPEPSDSFLARVQNHPA 189
           +  ++  VV  ++Y+EIVF EP + F   +   P 
Sbjct: 128 VKKERREVVISQNYEEIVFNEPMEPFYDLLTGGPT 162

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q6CF24|AF9_YARLI Protein AF-9 homolog OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YAF9 PE=3 SV=1

 Score =  103 bits (258), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 44/206 (21%)

Query: 82  TNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLN 141
           TN +LG  IK+ VF+LH ++ N TR +E PPFE++E+GWGEFEI+I ++F  ++ +K + 
Sbjct: 19  TNHELGF-IKKVVFKLHDTYANSTRTIEEPPFEVTETGWGEFEISIRIFFPTEMGEKNIL 77

Query: 142 LYHHLKLYP--------------------EDESGSMSTKKPVVVESYDEIVFPEPSDSFL 181
           LYHHLKL+P                    EDE  + +  +PV    YDE+VF EPS+   
Sbjct: 78  LYHHLKLHPYKKDNIPAQIGAPGGAPNANEDEENT-NVPQPVDSYVYDELVFNEPSEQMF 136

Query: 182 ARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAA 241
             + + P   LP                     + D  D P   + +  +EA+EL +L A
Sbjct: 137 ELLTSRPGALLP--------------------AKSDPND-PSKSYSLQ-TEAEELDRLTA 174

Query: 242 ARQQVQAHIAKLKRQISLIDGQQQQL 267
             + V   + K K  I  ++ +++ L
Sbjct: 175 GLETVYQQVQKTKEYILQLEKEKETL 200

Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histones H4 and H2A. The NuA4 complex is also involved in DNA repair. Yaf9 may also be required for viability in conditions in which the structural integrity of the spindle is compromised.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
356545002	273	PREDICTED: protein AF-9 homolog [Glycine	0.996	0.996	0.841	1e-135
224080520	271	predicted protein [Populus trichocarpa]	0.930	0.937	0.871	1e-130
225427812	273	PREDICTED: protein AF-9 homolog [Vitis v	0.989	0.989	0.819	1e-127
297794703	268	hypothetical protein ARALYDRAFT_494425 [	0.978	0.996	0.757	1e-122
15242448	268	YEATS family protein [Arabidopsis thalia	0.978	0.996	0.757	1e-121
334188213	267	YEATS family protein [Arabidopsis thalia	0.974	0.996	0.757	1e-121
297744708	246	unnamed protein product [Vitis vinifera]	0.879	0.975	0.85	1e-120
357473621	245	YEATS domain-containing protein [Medicag	0.893	0.995	0.799	1e-118
224103299	282	predicted protein [Populus trichocarpa]	0.893	0.865	0.754	1e-117
255543907	227	YEATS domain-containing protein, putativ	0.794	0.955	0.903	1e-115

>gi|356545002|ref|XP_003540935.1| PREDICTED: protein AF-9 homolog [Glycine max]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/272 (84%), Positives = 248/272 (91%)

Query: 1   MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAF 60
           MTNSSSS KHG  QP+ SGPT K QR KM K E+ +KKNL KKLKDVEISIPIVYGNVAF
Sbjct: 1   MTNSSSSTKHGQDQPDLSGPTPKSQRTKMGKSEDNDKKNLGKKLKDVEISIPIVYGNVAF 60

Query: 61  WLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGW 120
           WLGKKASEYQSHKWTVYVRGATNEDLG +IK AVFQLHSSFNNPTR VESPPFELSESGW
Sbjct: 61  WLGKKASEYQSHKWTVYVRGATNEDLGTIIKHAVFQLHSSFNNPTRVVESPPFELSESGW 120

Query: 121 GEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSF 180
           GEFE++ITLYFH+DVCDKPLNLYHHLKLYPEDE+ SMSTKKPVVVE YDEIVFP+PS++F
Sbjct: 121 GEFEVSITLYFHSDVCDKPLNLYHHLKLYPEDENSSMSTKKPVVVEFYDEIVFPDPSEAF 180

Query: 181 LARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLA 240
           LARVQNHPAV LPRLP G TLPP +P+ED SKR++GDTKDH L+QWFMNFSEADELLQLA
Sbjct: 181 LARVQNHPAVNLPRLPAGLTLPPSIPVEDASKRRKGDTKDHSLSQWFMNFSEADELLQLA 240

Query: 241 AARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           AARQQVQAHIAKL+RQISLIDGQ QQ +S+SD
Sbjct: 241 AARQQVQAHIAKLRRQISLIDGQHQQFKSSSD 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080520|ref|XP_002306148.1| predicted protein [Populus trichocarpa] gi|222849112|gb|EEE86659.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/257 (87%), Positives = 240/257 (93%), Gaps = 3/257 (1%)

Query: 16  EESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWT 75
           E SGP  K QRIKMSK EE  +K   KKLKDVEIS+PIVYGN+AFWLGKKA+EYQSHKWT
Sbjct: 18  EISGPIPKSQRIKMSKTEENTEK---KKLKDVEISVPIVYGNIAFWLGKKANEYQSHKWT 74

Query: 76  VYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADV 135
           VYVRGATNEDLGVVIKRAVFQLHSSFNNPTR +E+PPFELSE+GWGEFEIAITLYFH+DV
Sbjct: 75  VYVRGATNEDLGVVIKRAVFQLHSSFNNPTRVIEAPPFELSEAGWGEFEIAITLYFHSDV 134

Query: 136 CDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRL 195
           CDKPLNLYHHLKLYPEDESGS+S KKPVVVESYDEIVFPEPS+ FLAR+Q+HPAV LPRL
Sbjct: 135 CDKPLNLYHHLKLYPEDESGSLSMKKPVVVESYDEIVFPEPSEGFLARIQSHPAVNLPRL 194

Query: 196 PVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKR 255
           P GFTLPPPVP+EDTSKRKRGDTKDHPL+QWFMNFSEADELLQLAAARQQVQAHIAKL+R
Sbjct: 195 PSGFTLPPPVPVEDTSKRKRGDTKDHPLSQWFMNFSEADELLQLAAARQQVQAHIAKLRR 254

Query: 256 QISLIDGQQQQLRSTSD 272
           QISLIDGQ QQL+S SD
Sbjct: 255 QISLIDGQNQQLKSPSD 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427812|ref|XP_002275472.1| PREDICTED: protein AF-9 homolog [Vitis vinifera]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/271 (81%), Positives = 243/271 (89%), Gaps = 1/271 (0%)

Query: 3   NSSSSKKHGPGQPEESGPTLKLQRIKMSKP-EEAEKKNLNKKLKDVEISIPIVYGNVAFW 61
           +S S+KKHGP QP+  GPT K QR KM K  E+ EKKNLNK+LKDVEIS+PIVYGN+AFW
Sbjct: 2   HSLSTKKHGPDQPDIVGPTPKSQRSKMVKSTEDGEKKNLNKRLKDVEISVPIVYGNIAFW 61

Query: 62  LGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWG 121
           LGKKASEYQSHKWTVYVR  TNEDLGVVIKRAVFQLHSSFNNPTR VESPPFELSE+GWG
Sbjct: 62  LGKKASEYQSHKWTVYVRSPTNEDLGVVIKRAVFQLHSSFNNPTRVVESPPFELSEAGWG 121

Query: 122 EFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFL 181
           EFEIAITLYF +DVCDKPLNLYHHLKLYPEDESG MS KKPVVVESYDEIVF EPS+ F 
Sbjct: 122 EFEIAITLYFQSDVCDKPLNLYHHLKLYPEDESGPMSAKKPVVVESYDEIVFSEPSEGFF 181

Query: 182 ARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAA 241
           ARVQNHPAV +PRLP GF+LPPPVP+ED +++KR D+KD+PL QWF NFSEADELLQLAA
Sbjct: 182 ARVQNHPAVIVPRLPAGFSLPPPVPLEDVNEKKRFDSKDNPLNQWFKNFSEADELLQLAA 241

Query: 242 ARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           ARQQVQAHIAKL+RQIS+IDGQ QQL+ TSD
Sbjct: 242 ARQQVQAHIAKLRRQISVIDGQHQQLKPTSD 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794703|ref|XP_002865236.1| hypothetical protein ARALYDRAFT_494425 [Arabidopsis lyrata subsp. lyrata] gi|297311071|gb|EFH41495.1| hypothetical protein ARALYDRAFT_494425 [Arabidopsis lyrata subsp. lyrata]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 206/272 (75%), Positives = 238/272 (87%), Gaps = 5/272 (1%)

Query: 1   MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAF 60
           MTNSSSSKK    QPE S PTLK  + KM+K +E +KK     LKD+EIS+PIVYGNVAF
Sbjct: 1   MTNSSSSKKQAQDQPETSEPTLKSLKAKMTKSDEKQKK-----LKDIEISVPIVYGNVAF 55

Query: 61  WLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGW 120
           WLGKKASEYQSHKW VYVRGATNED+ VV+K+ VFQLHSSFNNPTR +E PPFE+SESGW
Sbjct: 56  WLGKKASEYQSHKWAVYVRGATNEDISVVVKKVVFQLHSSFNNPTRVIEEPPFEVSESGW 115

Query: 121 GEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSF 180
           GEFEIA+TL+FH+DVCDKPL+LYHHLKLYPEDESG ++ KKPVVVESYDEIVFP+PS+SF
Sbjct: 116 GEFEIAMTLHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 175

Query: 181 LARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLA 240
           L+RVQNHPA+T PRLP G+ LP P+ +EDT K+KRGDTKDH L QWFM+FSEADELLQLA
Sbjct: 176 LSRVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLGQWFMSFSEADELLQLA 235

Query: 241 AARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           AARQQVQAHIAKL+RQISL++GQ Q +++ SD
Sbjct: 236 AARQQVQAHIAKLRRQISLLEGQNQTVKTGSD 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242448|ref|NP_199373.1| YEATS family protein [Arabidopsis thaliana] gi|10177934|dbj|BAB11199.1| unnamed protein product [Arabidopsis thaliana] gi|18175886|gb|AAL59945.1| unknown protein [Arabidopsis thaliana] gi|20465403|gb|AAM20126.1| unknown protein [Arabidopsis thaliana] gi|39545912|gb|AAR28019.1| TAF14b [Arabidopsis thaliana] gi|332007890|gb|AED95273.1| YEATS family protein [Arabidopsis thaliana]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/272 (75%), Positives = 238/272 (87%), Gaps = 5/272 (1%)

Query: 1   MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAF 60
           MTNSSSSKK    QPE S PTLK  + KM+K +E +KK     LKD+EIS+PIVYGNVAF
Sbjct: 1   MTNSSSSKKQAQDQPETSEPTLKSLKTKMTKSDEKQKK-----LKDIEISVPIVYGNVAF 55

Query: 61  WLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGW 120
           WLGKKASEYQSHKW VYVRGATNED+ VV+K+ VFQLHSSFN+PTR +E PPFE+SESGW
Sbjct: 56  WLGKKASEYQSHKWAVYVRGATNEDISVVVKKVVFQLHSSFNSPTRVIEEPPFEVSESGW 115

Query: 121 GEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSF 180
           GEFEIA+TL+FH+DVCDKPL+LYHHLKLYPEDESG ++ KKPVVVESYDEIVFP+PS+SF
Sbjct: 116 GEFEIAMTLHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 175

Query: 181 LARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLA 240
           LARVQNHPA+T PRLP G+ LP P+ +EDT K+KRGDTKDH L QWFM+FSEADELLQLA
Sbjct: 176 LARVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLGQWFMSFSEADELLQLA 235

Query: 241 AARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           AARQQVQAHIAKL+RQISL++GQ Q +++ SD
Sbjct: 236 AARQQVQAHIAKLRRQISLLEGQNQTVKTGSD 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188213|ref|NP_001190475.1| YEATS family protein [Arabidopsis thaliana] gi|332007891|gb|AED95274.1| YEATS family protein [Arabidopsis thaliana]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/272 (75%), Positives = 237/272 (87%), Gaps = 6/272 (2%)

Query: 1   MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEKKNLNKKLKDVEISIPIVYGNVAF 60
           MTNSSSSKK    QPE S PTLK  + KM+K +E       KKLKD+EIS+PIVYGNVAF
Sbjct: 1   MTNSSSSKKQAQDQPETSEPTLKSLKTKMTKSDE------KKKLKDIEISVPIVYGNVAF 54

Query: 61  WLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGW 120
           WLGKKASEYQSHKW VYVRGATNED+ VV+K+ VFQLHSSFN+PTR +E PPFE+SESGW
Sbjct: 55  WLGKKASEYQSHKWAVYVRGATNEDISVVVKKVVFQLHSSFNSPTRVIEEPPFEVSESGW 114

Query: 121 GEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSF 180
           GEFEIA+TL+FH+DVCDKPL+LYHHLKLYPEDESG ++ KKPVVVESYDEIVFP+PS+SF
Sbjct: 115 GEFEIAMTLHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 174

Query: 181 LARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLA 240
           LARVQNHPA+T PRLP G+ LP P+ +EDT K+KRGDTKDH L QWFM+FSEADELLQLA
Sbjct: 175 LARVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLGQWFMSFSEADELLQLA 234

Query: 241 AARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           AARQQVQAHIAKL+RQISL++GQ Q +++ SD
Sbjct: 235 AARQQVQAHIAKLRRQISLLEGQNQTVKTGSD 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744708|emb|CBI37970.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/240 (85%), Positives = 222/240 (92%)

Query: 33  EEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKR 92
           E+ EKKNLNK+LKDVEIS+PIVYGN+AFWLGKKASEYQSHKWTVYVR  TNEDLGVVIKR
Sbjct: 6   EDGEKKNLNKRLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRSPTNEDLGVVIKR 65

Query: 93  AVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPED 152
           AVFQLHSSFNNPTR VESPPFELSE+GWGEFEIAITLYF +DVCDKPLNLYHHLKLYPED
Sbjct: 66  AVFQLHSSFNNPTRVVESPPFELSEAGWGEFEIAITLYFQSDVCDKPLNLYHHLKLYPED 125

Query: 153 ESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSK 212
           ESG MS KKPVVVESYDEIVF EPS+ F ARVQNHPAV +PRLP GF+LPPPVP+ED ++
Sbjct: 126 ESGPMSAKKPVVVESYDEIVFSEPSEGFFARVQNHPAVIVPRLPAGFSLPPPVPLEDVNE 185

Query: 213 RKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           +KR D+KD+PL QWF NFSEADELLQLAAARQQVQAHIAKL+RQIS+IDGQ QQL+ TSD
Sbjct: 186 KKRFDSKDNPLNQWFKNFSEADELLQLAAARQQVQAHIAKLRRQISVIDGQHQQLKPTSD 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473621|ref|XP_003607095.1| YEATS domain-containing protein [Medicago truncatula] gi|355508150|gb|AES89292.1| YEATS domain-containing protein [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 226/244 (92%)

Query: 29  MSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGV 88
           M K E+ +KKN  KKLKDVEIS+PIVYGNV+FWLGKKASEYQSHKWT+YVRGA+NEDLGV
Sbjct: 1   MGKSEDNDKKNSGKKLKDVEISVPIVYGNVSFWLGKKASEYQSHKWTIYVRGASNEDLGV 60

Query: 89  VIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKL 148
           ++KR VFQLH+SFNNPTR V++PPFELSE+GWGEFEIAITLYFH+DVCDKP+NLYH L+L
Sbjct: 61  IVKRVVFQLHTSFNNPTRIVDAPPFELSEAGWGEFEIAITLYFHSDVCDKPVNLYHQLRL 120

Query: 149 YPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIE 208
           YP+DES S STKKPVVVE YDE+VFP+PS++FLAR+QNHP V +PRLP G TLPPP+PIE
Sbjct: 121 YPDDESSSYSTKKPVVVEFYDEVVFPDPSEAFLARLQNHPVVNMPRLPAGLTLPPPIPIE 180

Query: 209 DTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLR 268
           D SKR+RGDTKD+PL+QWF+NFSEADELLQLAAARQQVQAHI+KLKRQISLIDGQ +QL+
Sbjct: 181 DASKRRRGDTKDNPLSQWFLNFSEADELLQLAAARQQVQAHISKLKRQISLIDGQHKQLK 240

Query: 269 STSD 272
           S+ D
Sbjct: 241 SSPD 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103299|ref|XP_002313001.1| predicted protein [Populus trichocarpa] gi|222849409|gb|EEE86956.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/281 (75%), Positives = 231/281 (82%), Gaps = 37/281 (13%)

Query: 29  MSKPEE-AEKKN----LNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATN 83
           MSKPEE  EKK     LNKKLKDVEISIPIVYGN+AFWLGKK++EYQSHKWT+YVRGATN
Sbjct: 1   MSKPEENTEKKESAQILNKKLKDVEISIPIVYGNIAFWLGKKSNEYQSHKWTIYVRGATN 60

Query: 84  EDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNL- 142
           EDLGVVIKRAVFQLHSSFNNPTR +E+PPFELSE+GWGEFEIAITLYFH+DVCDKPLNL 
Sbjct: 61  EDLGVVIKRAVFQLHSSFNNPTRVIEAPPFELSEAGWGEFEIAITLYFHSDVCDKPLNLK 120

Query: 143 -------------------------------YHHLKLYPEDESGSMSTKKPVVVESYDEI 171
                                          YHHLKLYPEDE G +S KKPVVVESYDEI
Sbjct: 121 ILLSFIFFSSLCMIVIYMLCSLDMVDSSAARYHHLKLYPEDEPGPVSMKKPVVVESYDEI 180

Query: 172 VFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFS 231
           VFPEPS+ FLARVQ+HPAV LPRLP GFTLPPP+P+EDTSKRKRGDTKD+PLAQWFM FS
Sbjct: 181 VFPEPSEGFLARVQSHPAVNLPRLPAGFTLPPPMPVEDTSKRKRGDTKDNPLAQWFMKFS 240

Query: 232 EADELLQLAAARQQVQAHIAKLKRQISLIDGQQQQLRSTSD 272
           EAD+LLQLAAARQQVQAHIAKL+RQISLI+GQ Q L+S S+
Sbjct: 241 EADKLLQLAAARQQVQAHIAKLRRQISLINGQDQHLKSPSN 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543907|ref|XP_002513016.1| YEATS domain-containing protein, putative [Ricinus communis] gi|223548027|gb|EEF49519.1| YEATS domain-containing protein, putative [Ricinus communis]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 207/217 (95%)

Query: 29  MSKPEEAEKKNLNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGV 88
           MSKPEE EKK LNKKLKDVEIS+PIVYGN++FWLGKKA+EYQSHKWTVYVRGATNEDLGV
Sbjct: 1   MSKPEEPEKKILNKKLKDVEISVPIVYGNISFWLGKKANEYQSHKWTVYVRGATNEDLGV 60

Query: 89  VIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKL 148
           VIKRAVFQLHSSFNNPTR +ESPPFELSE+GWGEFEIAITLYFH DVCDKPLNLYHHLKL
Sbjct: 61  VIKRAVFQLHSSFNNPTRVIESPPFELSEAGWGEFEIAITLYFHHDVCDKPLNLYHHLKL 120

Query: 149 YPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLPVGFTLPPPVPIE 208
           YPEDESG MS KKPVVVESYDEIVFPEPS+ F ARVQ+HPAVTLPRLP GF+LPPPVP+E
Sbjct: 121 YPEDESGPMSIKKPVVVESYDEIVFPEPSEGFFARVQSHPAVTLPRLPAGFSLPPPVPVE 180

Query: 209 DTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQ 245
           D SKRKRGDTKDHPL+QWFMNFSEADELLQLAAARQQ
Sbjct: 181 DASKRKRGDTKDHPLSQWFMNFSEADELLQLAAARQQ 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2157156	268	GAS41 "GLIOMAS 41" [Arabidopsi	0.978	0.996	0.694	3.7e-103
UNIPROTKB|Q32LE1	227	YEATS4 "Uncharacterized protei	0.472	0.568	0.492	1.8e-30
UNIPROTKB|E2QSI2	227	YEATS4 "Uncharacterized protei	0.472	0.568	0.492	1.8e-30
UNIPROTKB|O95619	227	YEATS4 "YEATS domain-containin	0.472	0.568	0.492	1.8e-30
MGI|MGI:1927224	227	Yeats4 "YEATS domain containin	0.472	0.568	0.492	1.8e-30
RGD|1305741	227	Yeats4 "YEATS domain containin	0.472	0.568	0.492	1.8e-30
UNIPROTKB|Q8UVS4	227	GAS41 "GAS41" [Gallus gallus (	0.472	0.568	0.477	4.9e-30
UNIPROTKB|E1BU44	224	YEATS4 "Uncharacterized protei	0.472	0.575	0.481	1.6e-29
ZFIN|ZDB-GENE-040718-252	226	yeats4 "YEATS domain containin	0.468	0.566	0.477	2.1e-29
UNIPROTKB|F8W1B9	211	YEATS4 "YEATS domain-containin	0.336	0.436	0.457	5.9e-29

TAIR|locus:2157156 GAS41 "GLIOMAS 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 189/272 (69%), Positives = 221/272 (81%)

Query:     1 MTNSSSSKKHGPGQPEESGPTLKLQRIKMSKPEEAEXXXXXXXXXDVEISIPIVYGNVAF 60
             MTNSSSSKK    QPE S PTLK  + KM+K +E +         D+EIS+PIVYGNVAF
Sbjct:     1 MTNSSSSKKQAQDQPETSEPTLKSLKTKMTKSDEKQKKLK-----DIEISVPIVYGNVAF 55

Query:    61 WLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGW 120
             WLGKKASEYQSHKW VYVRGATNED+ VV+K+ VFQLHSSFN+PTR +E PPFE+SESGW
Sbjct:    56 WLGKKASEYQSHKWAVYVRGATNEDISVVVKKVVFQLHSSFNSPTRVIEEPPFEVSESGW 115

Query:   121 GEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSF 180
             GEFEIA+TL+FH+DVCDKPL+LYHHLKLYPEDESG ++ KKPVVVESYDEIVFP+PS+SF
Sbjct:   116 GEFEIAMTLHFHSDVCDKPLSLYHHLKLYPEDESGPLTMKKPVVVESYDEIVFPDPSESF 175

Query:   181 LARVQNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADEXXXXX 240
             LARVQNHPA+T PRLP G+ LP P+ +EDT K+KRGDTKDH L QWFM+FSEADE     
Sbjct:   176 LARVQNHPALTFPRLPSGYNLPAPMQVEDTGKKKRGDTKDHSLGQWFMSFSEADELLQLA 235

Query:   241 XXXXXXXXHIAKLKRQISLIDGQQQQLRSTSD 272
                     HIAKL+RQISL++GQ Q +++ SD
Sbjct:   236 AARQQVQAHIAKLRRQISLLEGQNQTVKTGSD 267

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0090239 "regulation of histone H4 acetylation" evidence=IMP

UNIPROTKB|Q32LE1 YEATS4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 65/132 (49%), Positives = 90/132 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D + +M  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSD-TNAMLGKKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2QSI2 YEATS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 65/132 (49%), Positives = 90/132 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D + +M  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSD-TNAMLGKKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O95619 YEATS4 "YEATS domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 65/132 (49%), Positives = 90/132 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D + +M  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSD-TNAMLGKKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0040008 "regulation of growth" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0007067 "mitosis" evidence=NAS

GO:0016363 "nuclear matrix" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IDA

GO:0043968 "histone H2A acetylation" evidence=IDA

GO:0043967 "histone H4 acetylation" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1927224 Yeats4 "YEATS domain containing 4" [Mus musculus (taxid:10090)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 65/132 (49%), Positives = 90/132 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D + +M  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSD-TNAMLGKKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0040008 "regulation of growth" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

RGD|1305741 Yeats4 "YEATS domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 65/132 (49%), Positives = 90/132 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIVYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D + +M  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSD-TNAMLGKKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA;ISO

GO:0043967 "histone H4 acetylation" evidence=IEA;ISO

GO:0043968 "histone H2A acetylation" evidence=IEA;ISO

UNIPROTKB|Q8UVS4 GAS41 "GAS41" [Gallus gallus (taxid:9031)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 63/132 (47%), Positives = 89/132 (67%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  P+VYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPVVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D +  +  KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSDTNAILG-KKTVVS 136

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   137 EFYDEMIFQDPT 148

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

UNIPROTKB|E1BU44 YEATS4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 64/133 (48%), Positives = 91/133 (68%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  P+VYGNVA + GKK  E   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    17 VTIVKPVVYGNVARYFGKKREEDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 76

Query:   106 RAVES-PPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVV 164
             RAV + PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D +  +  KK VV
Sbjct:    77 RAVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSDTNAILG-KKTVV 134

Query:   165 VESYDEIVFPEPS 177
              E YDE++F +P+
Sbjct:   135 SEFYDEMIFQDPT 147

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-040718-252 yeats4 "YEATS domain containing 4" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 63/132 (47%), Positives = 88/132 (66%)

Query:    47 VEISIPIVYGNVAFWLGKKASEY-QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPT 105
             V I  PIV+GNVA + GKK  +   +H+WTVYV+   NED+   +K+  F+LH S+ NP 
Sbjct:    19 VTIVKPIVFGNVARYFGKKREDDGHTHQWTVYVKPYRNEDMSAYVKKIQFKLHESYGNPL 78

Query:   106 RAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVV 165
             R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LYH LKL+  D S     KK VV 
Sbjct:    79 RVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLYHLLKLFQSDSSAM--PKKTVVS 135

Query:   166 ESYDEIVFPEPS 177
             E YDE++F +P+
Sbjct:   136 EFYDEMIFQDPT 147

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F8W1B9 YEATS4 "YEATS domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 43/94 (45%), Positives = 65/94 (69%)

Query:    84 EDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLY 143
             +D+   +K+  F+LH S+ NP R V  PP+E++E+GWGEFEI I ++F  D  ++P+ LY
Sbjct:    98 KDMSAYVKKIQFKLHESYGNPLRVVTKPPYEITETGWGEFEIIIKIFF-IDPNERPVTLY 156

Query:   144 HHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPS 177
             H LKL+  D + +M  KK VV E YDE++F +P+
Sbjct:   157 HLLKLFQSD-TNAMLGKKTVVSEFYDEMIFQDPT 189

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam03366	84	pfam03366, YEATS, YEATS family	1e-35
COG5033	225	COG5033, TFG3, Transcription initiation factor IIF	1e-23

>gnl|CDD|190614 pfam03366, YEATS, YEATS family

 Score =  122 bits (308), Expect = 1e-35
 Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 2/83 (2%)

Query: 71  SHKWTVYVRGATNE-DLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITL 129
           +HKWTV+VRG  NE DL   IK+  F+LH SF NP R V  PPFE++E+GWGEFEI I +
Sbjct: 1   THKWTVFVRGLDNEGDLSYFIKKVTFKLHESFPNPVRTVTKPPFEVTETGWGEFEIPIKI 60

Query: 130 YFHADVCDKPLNLYHHLKLYPED 152
           YF  D  +KP+ + H LKL+PE 
Sbjct: 61  YFV-DSNEKPVTIQHDLKLHPEG 82

We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity. Length = 84

>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary subunit [Transcription]

 Score = 95.3 bits (237), Expect = 1e-23
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 16/163 (9%)

Query: 41  NKKLKDVEISIPIVYGNVAFWLG--KKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLH 98
            K+ + ++    I+ G     LG  ++     +H W V+VR    ED+  ++K+ +F+LH
Sbjct: 4   VKRTERLKTQRVIIPGEAKP-LGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLH 62

Query: 99  SSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP-------- 150
            +F+NPTR +ESPPFE+ E+GWGEF+I I ++F     +K ++ Y H    P        
Sbjct: 63  PTFSNPTRTIESPPFEIKETGWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVD 122

Query: 151 ----EDESGSMSTKKPVV-VESYDEIVFPEPSDSFLARVQNHP 188
                 +  S  +K   V      E  F EP+   L  +    
Sbjct: 123 IPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLNGAK 165

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG3149	249	consensus Transcription initiation factor IIF, aux	100.0
COG5033	225	TFG3 Transcription initiation factor IIF, auxiliar	100.0
PF03366	84	YEATS: YEATS family; InterPro: IPR005033 Named the	100.0

>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=1.2e-42  Score=317.59  Aligned_cols=228  Identities=36%  Similarity=0.582  Sum_probs=184.4

Q ss_pred             cccceeceEEEEEEEEccceEEcCCCCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEeee
Q 024038           40 LNKKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG  119 (273)
Q Consensus        40 ~~kR~k~~~I~~pIv~Gn~A~~l~kk~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  119 (273)
                      +.+|++.++|+++|+|||.|.+++++.++.+||.|+|||||.+++|++.||+||+|+||+||+||+|+|++|||+|+|+|
T Consensus         5 ~~~~~~~~~~~~~iv~G~~a~~~~~~~~~~~th~w~v~v~~~~~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~EtG   84 (249)
T KOG3149|consen    5 SIKRTKECTISVPIVPGNRAAILGKRLPDGFTHIWEVYVRGPGKEDISAFVDKVVFKLHESFPNPRRVVESPPFEITETG   84 (249)
T ss_pred             CcceeeeeeEEeeeecCccccccCCCCCcccceeeEEEecCcCccccceeeeeeeeecccccccccccccCCCceEEeec
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEEEeecCCCCCEEEEEEeecCCCCCC---C-----------CCcCCCCeEEEeee-EEEeeCCCHHHHHHH
Q 024038          120 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDES---G-----------SMSTKKPVVVESYD-EIVFPEPSDSFLARV  184 (273)
Q Consensus       120 WGEFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~---~-----------~~~~~~~V~~e~yd-EIvF~nPse~f~~~L  184 (273)
                      ||+|+|.|+|||.++.+++++.++|+|.|++++..   .           ....+.+|+++.|+ +++|++|++.++..+
T Consensus        85 wgeF~i~i~i~f~d~~~~~~v~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~r~~v~~~~~~~e~~f~~~~~~~~~~~  164 (249)
T KOG3149|consen   85 WGEFEIQIEIFFTDDANEKKVTLYHDLKLHSYGAPPVPHEESTKKTFVNPTISLRIPVVREGVDVEIVFPDPTESTSIEA  164 (249)
T ss_pred             cccceEEEEEEeccCCCCceeeeeeeEEeeccCCCCccchhhhcccccccchhcccccccccccceeecCCCCccccccc
Confidence            99999999999999999999999999999987431   1           12347799999999 999999999999999


Q ss_pred             hcCCCccCCCCCCCCCCCCCCCCcccccccCCCCCCCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024038          185 QNHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLIDGQQ  264 (273)
Q Consensus       185 ~~~~~~~~p~~p~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~f~~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~  264 (273)
                      ...+..+..+.+....++............+.++++.-...+.-...|..+.++++.+.+.++.++.++++++..++++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (249)
T KOG3149|consen  165 SSRPVGPGSNLAAVTDLKQVKSKTLPSLLSKESSKDVKTEKSSERPNEIDEVDRLEKKIKELKKEINKVRKDIEKLEGEI  244 (249)
T ss_pred             CCCCCcCCccccccccccccccccCcccccccccccccccccccccccchhhhhhhhhhhhhhhHHHHHHHhhhhccccc
Confidence            98875443332222222211111111111222232322334445566899999999999999999999999999999886


Q ss_pred             hhc
Q 024038          265 QQL  267 (273)
Q Consensus       265 ~~~  267 (273)
                      ...
T Consensus       245 ~~~  247 (249)
T KOG3149|consen  245 DLQ  247 (249)
T ss_pred             ccc
Confidence            543

>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]

Probab=100.00  E-value=2.4e-38  Score=282.10  Aligned_cols=198  Identities=27%  Similarity=0.455  Sum_probs=165.5

Q ss_pred             ccceeceEEEEEEEEccceEEcCCC--CCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEee
Q 024038           41 NKKLKDVEISIPIVYGNVAFWLGKK--ASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSES  118 (273)
Q Consensus        41 ~kR~k~~~I~~pIv~Gn~A~~l~kk--~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~  118 (273)
                      .+|+.++.++++|++| .|..++..  .+-.+||-|.||||++.+||+++||+||+|+|||||+||+|++++|||+|.|+
T Consensus         4 ~krt~r~~t~r~Iipg-ea~~~~~e~~~P~r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~Et   82 (225)
T COG5033           4 VKRTERLKTQRVIIPG-EAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKET   82 (225)
T ss_pred             ceeeEeeeeeceeccC-ccccCCccccCCchhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEEec
Confidence            5899999999999999 99999864  78889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCCC-------------CcCCCCeEEEeeeEEEeeCCCHHHHHHHh
Q 024038          119 GWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGS-------------MSTKKPVVVESYDEIVFPEPSDSFLARVQ  185 (273)
Q Consensus       119 GWGEFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~~~-------------~~~~~~V~~e~ydEIvF~nPse~f~~~L~  185 (273)
                      |||||+|.|+|||.++++++.+.++|++.++++....+             .+....|-+..+++++|++|...++++|+
T Consensus        83 GWGEF~i~I~iff~~~age~~~~fyl~f~~~~Y~v~~~v~~~~~~~~l~~elsk~geve~~~~~~~~~nep~i~~~k~~~  162 (225)
T COG5033          83 GWGEFDIQIKIFFAEKAGEKTIHFYLHFGDEPYAVDEPVDIPVNRPDLTSELSKSGEVESVYKREKRFNEPNIQALKLLN  162 (225)
T ss_pred             ccccceEEEEEEEecCCCceEeehhhhcccccccccccccccccccchhhhhhhcCcccceeeeeecccCchhHHHHhhh
Confidence            99999999999999999999777777777777642111             12345677778999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCcccccccCCCCCCCCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024038          186 NHPAVTLPRLPVGFTLPPPVPIEDTSKRKRGDTKDHPLAQWFMNFSEADELLQLAAARQQVQAHIAKLKRQISLID  261 (273)
Q Consensus       186 ~~~~~~~p~~p~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~f~~~~E~~El~~l~~a~~kV~~~i~~lk~~l~~~e  261 (273)
                      ..+..      .+..|+.-            .+.    ...|+.+.++++++++..+.+++...|+.++.....+-
T Consensus       163 ~~~~~------~a~gl~~~------------~ed----d~~~v~Ql~~d~~~~v~~~ie~~~~~id~y~~~~~~L~  216 (225)
T COG5033         163 GAKMK------LAIGLHKL------------RED----DLVFVVQLVQDPIMAVLNLIEKGEFKIDLYKLPSDLLH  216 (225)
T ss_pred             cCccc------ccccCccc------------ccc----cceeeEecCcCHHHHHHhccccCceEeeehhCchhhhh
Confidence            87631      12233321            011    35688999999999999999999999999887666543

>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein

Probab=100.00  E-value=1e-35  Score=232.20  Aligned_cols=82  Identities=54%  Similarity=1.007  Sum_probs=70.5

Q ss_pred             eeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEeeeEEEEEEEEEEEEeecCCCCCEEEEEEeecCC
Q 024038           71 SHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP  150 (273)
Q Consensus        71 tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWGEFeI~IkI~F~~~~~ekp~~l~H~L~L~~  150 (273)
                      ||+|+||||+.+++|++++|+||+|+|||||+||+|+|++|||+|+|+|||||+|.|+|||+++++++++++.|+|+|++
T Consensus         1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L~l~~   80 (84)
T PF03366_consen    1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDLKLHQ   80 (84)
T ss_dssp             -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE--SSS
T ss_pred             CcEEEEEEEeCCCCCccceEEEEEEECCCCCCCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEEEcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999877899999999999997


Q ss_pred             CC
Q 024038          151 ED  152 (273)
Q Consensus       151 ~~  152 (273)
                      ++
T Consensus        81 ~~   82 (84)
T PF03366_consen   81 DG   82 (84)
T ss_dssp             CE
T ss_pred             CC
Confidence            54

All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
3rls_A	175	Crystal Structure Of Yeast Af-9 Homolog Protein Yaf		2e-30
3fk3_A	164	Structure Of The Yeats Domain, Yaf9 Length = 164		4e-28
3qrl_A	140	Crystal Structure Of The Taf14 Yeats Domain Length		3e-05
2l7e_A	131	The Structure Of A Domain From Yeast Length = 131		3e-05

>pdb|3RLS|A Chain A, Crystal Structure Of Yeast Af-9 Homolog Protein Yaf9 Length = 175

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 17/166 (10%)
Query: 47  VEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102
           + +S PI+YGN A  +G      A    +H WT++VRG  NED+   IK+ VF+LH ++ 
Sbjct: 4   LSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYP 63
Query: 103 NPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP------------ 150
           NP R++E+PPFEL+E+GWGEF+I I +YF  +  +K LN YH L+L+P            
Sbjct: 64  NPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGN 123
Query: 151 EDESGSMSTKKPVVVESY-DEIVFPEPSDSFLARVQNHPAVTLPRL 195
           E  +   ++K   V   Y DEIVF EP++ F   + + P   LP L
Sbjct: 124 EQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSL 169

>pdb|3FK3|A Chain A, Structure Of The Yeats Domain, Yaf9 Length = 164

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 90/152 (59%), Gaps = 17/152 (11%)
Query: 47  VEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102
           + +S PI+YGN A   G      A    +H WT++VRG  NED+   IK+ VF+LH ++ 
Sbjct: 7   LSVSRPIIYGNTAKKXGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYP 66
Query: 103 NPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYP------------ 150
           NP R++E+PPFEL+E+GWGEF+I I +YF  +  +K LN YH L+L+P            
Sbjct: 67  NPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGN 126
Query: 151 EDESGSMSTKKPVVVESY-DEIVFPEPSDSFL 181
           E  +   ++K   V   Y DEIVF EP++ F 
Sbjct: 127 EQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFF 158

>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain Length = 140

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 87  GVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYF 131
             +  + ++ LH +F NP R    PPF + E GWG F + I+++ 
Sbjct: 51  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 95

>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast Length = 131

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 87  GVVIKRAVFQLHSSFNNPTRAVESPPFELSESGWGEFEIAITLYF 131
             +  + ++ LH +F NP R    PPF + E GWG F + I+++ 
Sbjct: 48  ATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFL 92
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	4e-52
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	1e-37

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A Length = 175

 Score =  167 bits (423), Expect = 4e-52
 Identities = 66/170 (38%), Positives = 95/170 (55%), Gaps = 17/170 (10%)

Query: 44  LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHS 99
           +K + +S PI+YGN A  +G      A    +H WT++VRG  NED+   IK+ VF+LH 
Sbjct: 1   IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHD 60

Query: 100 SFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG---- 155
           ++ NP R++E+PPFEL+E+GWGEF+I I +YF  +  +K LN YH L+L+P         
Sbjct: 61  TYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSD 120

Query: 156 ---------SMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPAVTLPRLP 196
                      S    V    +DEIVF EP++ F   + + P   LP L 
Sbjct: 121 NGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMSRPGNLLPSLE 170

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A Length = 140

 Score =  128 bits (324), Expect = 1e-37
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 42  KKLKDVEISIPIVYGNVAFWLGKKASEYQSHKWTVYVRGA---TNEDLGVVIKRAVFQLH 98
             +  V+ +I I               +   +W++ +        E    +  + ++ LH
Sbjct: 3   HMVATVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLH 62

Query: 99  SSFNNPTRAVESPPFELSESGWGEFEIAITLYFHADVCDKPL--NLYHHLKLYPEDESGS 156
            +F NP R    PPF + E GWG F + I+++      ++ +  +L    + Y  +    
Sbjct: 63  PTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHDLNFLQESYEVEHVIQ 122

Query: 157 MSTKKPVVVESYDE 170
           +   KP++ E   +
Sbjct: 123 IPLNKPLLTEELAK 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
3rls_A	175	YAF9, protein AF-9 homolog; yeats domain, histone,	100.0
3qrl_A	140	Transcription initiation factor TFIID subunit 14;	100.0
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	83.09

>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A

Probab=100.00  E-value=6.2e-56  Score=385.31  Aligned_cols=151  Identities=43%  Similarity=0.833  Sum_probs=135.4

Q ss_pred             eeceEEEEEEEEccceEEcCC----CCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceeecCCcEEEeee
Q 024038           44 LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG  119 (273)
Q Consensus        44 ~k~~~I~~pIv~Gn~A~~l~k----k~~~~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G  119 (273)
                      |||++|+|||||||+|+++++    +++++|||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus         1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G   80 (175)
T 3rls_A            1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG   80 (175)
T ss_dssp             CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred             CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence            689999999999999999996    3567899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCC-------C------CcCCCCeEEEeeeEEEeeCCCHHHHHHHhc
Q 024038          120 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG-------S------MSTKKPVVVESYDEIVFPEPSDSFLARVQN  186 (273)
Q Consensus       120 WGEFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~~-------~------~~~~~~V~~e~ydEIvF~nPse~f~~~L~~  186 (273)
                      ||||+|.|+|||++++++|+++|+|+|+||+++.+.       .      ..+++||++|+||||||+||+|.||++|++
T Consensus        81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~  160 (175)
T 3rls_A           81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS  160 (175)
T ss_dssp             SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred             EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence            999999999999988899999999999999986441       1      124789999999999999999999999999


Q ss_pred             CCCccCCC
Q 024038          187 HPAVTLPR  194 (273)
Q Consensus       187 ~~~~~~p~  194 (273)
                      +|++++|.
T Consensus       161 ~p~~~lp~  168 (175)
T 3rls_A          161 RPGNLLPS  168 (175)
T ss_dssp             STTCCSCS
T ss_pred             CCCccCCC
Confidence            99988763

>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A

Probab=100.00  E-value=4.8e-37  Score=258.45  Aligned_cols=127  Identities=20%  Similarity=0.486  Sum_probs=108.4

Q ss_pred             eEEEEEEEEccceEEcCCCC--CCCCeeeEE--EEEeCCCCCCcc-cceeeeEEEeCCCCCCCcceeecCCcEEEeeeEE
Q 024038           47 VEISIPIVYGNVAFWLGKKA--SEYQSHKWT--VYVRGATNEDLG-VVIKRAVFQLHSSFNNPTRAVESPPFELSESGWG  121 (273)
Q Consensus        47 ~~I~~pIv~Gn~A~~l~kk~--~~~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG  121 (273)
                      |...+.|+-+..  .+++..  .+.++|+|+  |||||.+++|++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus         8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG   85 (140)
T 3qrl_A            8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG   85 (140)
T ss_dssp             EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred             eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence            444455555554  565543  345779999  899999999885 8999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCCCCcCCCCeEEEeeeEEEeeCCCHHHHHHHhcCCC
Q 024038          122 EFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPA  189 (273)
Q Consensus       122 EFeI~IkI~F~~~~~ekp~~l~H~L~L~~~~~~~~~~~~~~V~~e~ydEIvF~nPse~f~~~L~~~~~  189 (273)
                      ||+|.|+|||++++  ++++|.|+|+|+++.            ++.+++|+|+||+++|+++|+.+|+
T Consensus        86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp  139 (140)
T 3qrl_A           86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS  139 (140)
T ss_dssp             CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred             eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence            99999999999764  578999999999643            6678899999999999999999864

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=83.09  E-value=2.1  Score=28.99  Aligned_cols=32  Identities=16%  Similarity=0.288  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024038          233 ADELLQLAAARQQVQAHIAKLKRQISLIDGQQ  264 (273)
Q Consensus       233 ~~El~~l~~a~~kV~~~i~~lk~~l~~~e~~~  264 (273)
                      -.-++|++.-..++.+.|.+|+.+++.+|...
T Consensus         8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a   39 (42)
T 2l5g_B            8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34578888888999999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00