Citrus Sinensis ID: 024048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDGRALHGMRDKGRRQARNGGNNNGVPEYNNGHWDGGAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Secondary Structure (PSIPRED)
ccccEEcccccccccccccEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEcEEEEEEEccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHccHcHHHHHHHHHHHHHHEEEccccccc
Coil and Loop (DISEMBL)
mdryqkvekpktetaiseNELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVglhqntstgsiditdvwepleegllplettrHVSAITITLSRkeldssslgyqppvptdqvkpladyddgralhgmrdkgrrqarnggnnngvpeynnghwdggagyggrgrgraagrsfwghgrrydgnmqqeseyyngyggsgalppqgrgncllafscSYSLSFILAKQLHGVDKFVFLLFYYFCGLlfvylpfpfff
Flexible Loop (DISEMBL)
mdryqkvekpktetaisenelritaqgrLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRvvglhqntstgsiditdvwePLEEGLLPLETTRHVSAITITLsrkeldssslgyqppvptdqvkplaDYDDGRALHGmrdkgrrqarnggnnngvpeynnghWDGGAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Low Complexity Region (SEG)
MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWepleegllpleTTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDGRALHGMRDKgrrqarnggnnngVPEYNNGHWDggagyggrgrgraagrSFWGHGRRYDGNMQQeseyyngyggsgALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKfvfllfyyfcgllfvylpfpfff
Disordered region (IsUnstruct)
********************LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITL***********************************************************HWDGGAGYGGRGRGRAAGRSFWGHGRRYD*******EYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFF*
Disordered Region (DISOPRED)
**RYQK**************LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQP*V************************************************************************************************GNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Disordered Region (DISEMBL)
**************AISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDGRALHGMRDKGRRQARNGGNNNGVPEYNNGHWDGGAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Disordered Region (DISPRO)
**RYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQV*********************************************Y**RGR*RAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDGRALHGMRDKGRRQARNGGNNNGVPEYNNGHWDGGAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQGRGNCLLAFSCSYSLSFILAKQLHGVDKFVFLLFYYFCGLLFVYLPFPFFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.465	0.779	0.375	8e-17
Q99JH1	163	Ribonuclease P protein su	yes	no	0.395	0.662	0.427	2e-16
Q2KIR4	163	Ribonuclease P protein su	yes	no	0.479	0.803	0.368	1e-15
Q9BUL9	199	Ribonuclease P protein su	no	no	0.399	0.547	0.336	1e-12
Q5PPN2	199	Ribonuclease P protein su	no	no	0.391	0.537	0.324	2e-12
Q91WE3	199	Ribonuclease P protein su	no	no	0.391	0.537	0.324	2e-12
P60851	90	DNA/RNA-binding protein A	yes	no	0.289	0.877	0.363	0.0002
Q2NHL8	90	DNA/RNA-binding protein A	yes	no	0.274	0.833	0.357	0.0009

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 1   MDRYQKV-------EKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKAT 53
           M+ Y+K          P  +      E+R+    ++RN +  A+  LE   A  VV   +
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query: 54  GRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPL--EEGLLPLETTRHVSAITIT 111
           GRA  K V  AE++KRRV GLHQ T    +   D W P   + GL PL   RHV A+ + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 112 LSRKELDSSSLGYQPP 127
           LSR  LD +  GYQPP
Sbjct: 121 LSRDPLDPNECGYQPP 136

May be a component of ribonuclease P or MRP.
Homo sapiens (taxid: 9606)

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 20  ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
           E+R+    ++RN +  A+  LE      VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct: 27  EMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query: 80  TGSIDITDVWEPL--EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
              +   D W P   + GL PL   RHV A+ + LSR  LD S  GYQPP
Sbjct: 87  LRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.

Mus musculus (taxid: 10090)

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 70/141 (49%), Gaps = 10/141 (7%)

Query: 1   MDRYQKV-------EKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKAT 53
           M+ Y+K          P  +      E+R+ A  ++RN +  A+  LE   A  VV   +
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60

Query: 54  GRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPL--EEGLLPLETTRHVSAITIT 111
           GRA  K V  AE++KRRV GL+Q T    +   D W P   + GL PL    HV A+ + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 112 LSRKELDSSSLGYQPP-VPTD 131
           LSR  LD +  GYQPP  P D
Sbjct: 121 LSRDPLDPNEYGYQPPGAPPD 141

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 21  LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
           +R+    ++RN +++A + + +     +V    GRA  KTV  AE+LKRR+ GLHQ T  
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSIDITDVWEPLE----EGLLP------LETTRHVSAITITLSRKELDSSSLGYQPPVP 129
               + +VW+ L     +G  P      L   ++V  + I LS+  LD    GYQPP P
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 21  LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
           +R+    ++RN +++A + + +     +V    GRA  KTV  AE+LKRR+ GLHQ T  
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSIDITDVWEPL----------EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
               + +VW+ L           +    L   ++V ++ I LS+  LD   LGYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 21  LRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST 80
           +R+    ++RN +++A + + +     +V    GRA  KTV  AE+LKRR+ GLHQ T  
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  GSIDITDVWEPL----------EEGLLPLETTRHVSAITITLSRKELDSSSLGYQPP 127
               + +VW+ L           +    L   ++V ++ I LS+  LD   LGYQPP
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain Kin4-M) GN=albA PE=3 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 29  LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDV 88
           L NY+  A+ +   +GANEVV+KA GR I++ V +AE +++R +        G +D+ D+
Sbjct: 11  LTNYV-MAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA-------GQVDVGDI 62

Query: 89  WEPLEEGLLPLE-TTRHVSAITITLSRK 115
               EE + P     R VS I I L +K
Sbjct: 63  KIDSEEVVDPATGQKRTVSTIEIKLVKK 90

Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.

Nanoarchaeum equitans (strain Kin4-M) (taxid: 228908)

>sp|Q2NHL8|ALBA_METST DNA/RNA-binding protein Alba OS=Methanosphaera stadtmanae (strain DSM 3091) GN=albA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 9/84 (10%)

Query: 31  NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
           NY+   ++ +   G  EV+LKA GRAI++ V +AE+++ R +    +    SIDI+    
Sbjct: 16  NYVLAVVTQMNS-GVTEVILKARGRAISRAVDVAEIVRNRFI---SDVDVKSIDIST--- 68

Query: 91  PLEEGLLPLETTRHVSAITITLSR 114
             EE +    T+ +VSAI I LS+
Sbjct: 69  --EEIVGNEGTSSNVSAIEIRLSK 90

Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.

Methanosphaera stadtmanae (strain DSM 3091) (taxid: 339860)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
255574044	237	conserved hypothetical protein [Ricinus	0.754	0.869	0.672	9e-75
296082548	282	unnamed protein product [Vitis vinifera]	0.512	0.496	0.778	3e-60
225438471	255	PREDICTED: uncharacterized protein LOC10	0.512	0.549	0.778	4e-60
356509014	261	PREDICTED: uncharacterized protein LOC10	0.516	0.540	0.773	6e-60
242050024	267	hypothetical protein SORBIDRAFT_02g03145	0.538	0.550	0.734	1e-59
224062870	249	predicted protein [Populus trichocarpa]	0.512	0.562	0.764	3e-59
358248282	249	uncharacterized protein LOC100818986 [Gl	0.512	0.562	0.771	4e-59
222642011	671	hypothetical protein OsJ_30189 [Oryza sa	0.516	0.210	0.751	6e-59
357464479	351	Ribonuclease P protein subunit p25 [Medi	0.421	0.327	0.751	7e-59
225460634	259	PREDICTED: uncharacterized protein LOC10	0.809	0.853	0.6	8e-59

>gi|255574044|ref|XP_002527938.1| conserved hypothetical protein [Ricinus communis] gi|223532642|gb|EEF34427.1| conserved hypothetical protein [Ricinus communis]

 Score =  286 bits (731), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 150/223 (67%), Positives = 166/223 (74%), Gaps = 17/223 (7%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQKVEKPK ETAI+ENELRITAQGR+RNYISYA+SLL+EKG +EVVLKATGRAINKT
Sbjct: 1   MDRYQKVEKPKAETAINENELRITAQGRMRNYISYALSLLQEKGTDEVVLKATGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAELLKRR+VGLHQNTS GSIDITD WEPLEEGLLPLETTRHVS +TITLS+KEL+ S
Sbjct: 61  VMIAELLKRRIVGLHQNTSIGSIDITDTWEPLEEGLLPLETTRHVSVVTITLSKKELNLS 120

Query: 121 SLGYQPPVPTDQVKPLADYDDGRALHGMRDKGRRQARNGGNNNGVPEYNNGHWD-GGAGY 179
           S+GYQPP+P DQVKPLA+YDD R                GN+NGV E+ NG WD G    
Sbjct: 121 SIGYQPPIPADQVKPLAEYDDER----------------GNSNGVAEHTNGVWDGGRGYG 164

Query: 180 GGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQ 222
                                GNM+QES YYNGYGGS  +P Q
Sbjct: 165 NRGRGRGRGRGFRGRGRGYGGGNMKQESGYYNGYGGSAGMPAQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082548|emb|CBI21553.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 129/140 (92%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+TET I+ENE+RIT QGR+RNYI+YA +LL+EKG+NE+VLKA GRAINKT
Sbjct: 28  MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 87

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMI+EL+KRR+VGLHQNTS GS DITD+WEPLE+GLLPLETTRHVS ITITLS+KELD+S
Sbjct: 88  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 147

Query: 121 SLGYQPPVPTDQVKPLADYD 140
           S GYQPP+P DQVKPL + +
Sbjct: 148 STGYQPPIPVDQVKPLNELE 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438471|ref|XP_002277849.1| PREDICTED: uncharacterized protein LOC100254260 [Vitis vinifera] gi|147856397|emb|CAN82465.1| hypothetical protein VITISV_002662 [Vitis vinifera]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 129/140 (92%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+TET I+ENE+RIT QGR+RNYI+YA +LL+EKG+NE+VLKA GRAINKT
Sbjct: 1   MDRYQRVEKPRTETPINENEIRITTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMI+EL+KRR+VGLHQNTS GS DITD+WEPLE+GLLPLETTRHVS ITITLS+KELD+S
Sbjct: 61  VMISELIKRRIVGLHQNTSIGSTDITDMWEPLEDGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SLGYQPPVPTDQVKPLADYD 140
           S GYQPP+P DQVKPL + +
Sbjct: 121 STGYQPPIPVDQVKPLNELE 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509014|ref|XP_003523247.1| PREDICTED: uncharacterized protein LOC100792158 [Glycine max]

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 128/141 (90%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKPK E+ I+ENE+R+T+QGR RNYI+YA +LL+EKG++E+VLKA GRAINKT
Sbjct: 1   MDRYQRVEKPKAESPINENEIRVTSQGRTRNYITYATTLLQEKGSSEIVLKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAEL+KRR+VGLHQNT  GS DITD WEPLEEGLLPLETTRHVS ITITLS+KELD+S
Sbjct: 61  VMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SLGYQPPVPTDQVKPLADYDD 141
           S GYQPP+P DQVKPL +YD+
Sbjct: 121 STGYQPPLPVDQVKPLNEYDE 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050024|ref|XP_002462756.1| hypothetical protein SORBIDRAFT_02g031450 [Sorghum bicolor] gi|241926133|gb|EER99277.1| hypothetical protein SORBIDRAFT_02g031450 [Sorghum bicolor]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 129/147 (87%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+ E  I ENE+RIT QGR+RNYI+YA +LL++KG++EVV KA GRAINKT
Sbjct: 1   MDRYQRVEKPREEAPIKENEIRITTQGRMRNYITYATALLQDKGSDEVVFKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAEL+KRR+VGLHQNT+TGS DITD+WEPLEEGLLPLETTRHVS ITITLS+KELD+S
Sbjct: 61  VMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SLGYQPPVPTDQVKPLADYDDGRALHG 147
           S+GYQ P+P D+VKPL +YD+    H 
Sbjct: 121 SIGYQSPLPADEVKPLVEYDNDEDAHS 147

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062870|ref|XP_002300911.1| predicted protein [Populus trichocarpa] gi|222842637|gb|EEE80184.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 125/140 (89%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+ ET I+ENE+RIT QGR+RNYI+YA +L +EKG++E+ LKA GRAINKT
Sbjct: 1   MDRYQRVEKPRNETPINENEIRITTQGRMRNYITYATTLFQEKGSDEISLKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAEL+KRR+ GLHQNTS GS DITD WEPLEEGLLPLETTRHVS IT+TLS+KELD+S
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSVITVTLSKKELDTS 120

Query: 121 SLGYQPPVPTDQVKPLADYD 140
           S GYQ P+P DQVKPLA+YD
Sbjct: 121 STGYQSPIPADQVKPLAEYD 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248282|ref|NP_001239854.1| uncharacterized protein LOC100818986 [Glycine max] gi|255639553|gb|ACU20071.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 125/140 (89%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQKVEKP+ ET I ENE+RIT+QGR+RNYI+YA+SLL+EKG+NE+V KA GRAINKT
Sbjct: 1   MDRYQKVEKPRAETPIDENEIRITSQGRMRNYITYAMSLLQEKGSNEIVFKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           V I EL+KRR+VGLHQNT+ GS DITD WEPLEEGLLPLETTRHVS ITITLS+KELD+S
Sbjct: 61  VTIVELIKRRIVGLHQNTAIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SLGYQPPVPTDQVKPLADYD 140
           S+GYQPP+P DQVK   D+D
Sbjct: 121 SVGYQPPLPADQVKAATDFD 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222642011|gb|EEE70143.1| hypothetical protein OsJ_30189 [Oryza sativa Japonica Group]

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 128/141 (90%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+ E  I ENE+RIT QGR+RNYI+YA +LL++KG++EVV KA GRAINKT
Sbjct: 403 MDRYQRVEKPREEAPIKENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKT 462

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAEL+KRR+VGLHQNT+TGS DITD+WEPLEEGLLPLETTRHVS ITITLS+KELD+S
Sbjct: 463 VMIAELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKELDTS 522

Query: 121 SLGYQPPVPTDQVKPLADYDD 141
           S+GYQ P+P D+VKPL +Y++
Sbjct: 523 SIGYQSPLPADKVKPLVEYEN 543

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464479|ref|XP_003602521.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355491569|gb|AES72772.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 126/141 (89%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKPK ++ I+ENE+RIT QGR+RNYI+YA +L +EKG++E+V+KA GRAINKT
Sbjct: 107 MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 166

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMI EL+KRR+VGLHQNT  GS DITD WEPLEEGLLPLETTRHVS ITITLS+KELD+S
Sbjct: 167 VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 226

Query: 121 SLGYQPPVPTDQVKPLADYDD 141
           S GYQPP+P DQVKPL +Y+D
Sbjct: 227 STGYQPPLPADQVKPLNEYED 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460634|ref|XP_002264932.1| PREDICTED: uncharacterized protein LOC100265751 [Vitis vinifera] gi|296081198|emb|CBI18224.3| unnamed protein product [Vitis vinifera]

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 162/230 (70%), Gaps = 9/230 (3%)

Query: 1   MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
           MDRYQ+VEKP+ ET I+ENE+RITAQGR+RNYI+YA +LL++KG++E+ LKA GRAINKT
Sbjct: 1   MDRYQRVEKPRPETPINENEIRITAQGRMRNYITYATTLLQDKGSDEIALKAMGRAINKT 60

Query: 61  VMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSS 120
           VMIAEL+KRR+ GLHQNTS GS DITD+WEPLEEGLLPLETTRHVS I ITLS+KELD S
Sbjct: 61  VMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITLSKKELDIS 120

Query: 121 SLGYQPPVPTDQVKPLADYD-DGRALHGM----RDKGRRQARNGGNNNGVPEYN-NGHWD 174
           S GYQPP+P DQV+P  +YD +G     M    R    R    G NNNG+ EYN +G WD
Sbjct: 121 STGYQPPIPADQVRPWTEYDYEGEGSPAMRGRGRSGRGRGRGRGNNNNGMVEYNGDGGWD 180

Query: 175 G--GAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQ 222
           G  G   G                    G+MQQE   YN Y GSGA+P Q
Sbjct: 181 GVRGGYGGRARGRGRGRGYRGRGRGYGGGDMQQEMGGYNDY-GSGAVPAQ 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.512	0.444	0.607	2.9e-44
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.523	0.408	0.611	3.7e-44
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.523	0.353	0.545	9.2e-36
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.479	0.803	0.358	5.4e-15
UNIPROTKB|E2RC74	163	C11H9orf23 "Uncharacterized pr	0.479	0.803	0.358	5.4e-15
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.479	0.803	0.358	5.4e-15
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.395	0.662	0.390	6.9e-15
RGD|1306576	163	Rpp25l "ribonuclease P/MRP 25	0.395	0.662	0.390	6.9e-15
UNIPROTKB|E1BQE8	164	RPP25 "Uncharacterized protein	0.479	0.798	0.302	8.8e-15
MGI|MGI:1917211	163	Rpp25l "ribonuclease P/MRP 25	0.395	0.662	0.390	8.8e-15

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 85/140 (60%), Positives = 109/140 (77%)

Query:     1 MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
             MD+YQ+VEKPK +T I+ENE+RIT+ GR RNYI+YA++LL+E  +NEV+ KA GRAINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTTRHVSAITITLSRKELDSS 120
             V I EL+KRR+ GLHQ TS GS DITD W           TTRHVS ITITLS+++L++S
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 SLGYQPPVPTDQVKPLADYD 140
             S+GYQ P+P + VKPLA+ D
Sbjct:   121 SVGYQCPIPIEMVKPLAEID 140

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 88/144 (61%), Positives = 109/144 (75%)

Query:     1 MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
             MD+YQ+V KPK +T I  NE+RIT+QGR RNYI+YA++LL++KG+ EVV KA GRAINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTTRHVSAITITLSRKELDSS 120
             V I EL+KRR+  LHQNTS GS DITD W           TTRHVS ITITLS+ EL++S
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 SLGYQPPVPTDQVKPLADYD-DGR 143
             S+GYQ P+P + VKP+ D D +GR
Sbjct:   121 SVGYQCPIPIELVKPMGDIDYEGR 144

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 78/143 (54%), Positives = 99/143 (69%)

Query:     1 MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKT 60
             MDRYQ+V KPK E+ I+ENE+RIT++G +RNYISYA SLL+EK   ++VLKA G+AI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VMIAELLKRRVVGLHQNTSTGSIDITDVWXXXXXXXXXXXTTRHVSAITITLSRKELDSS 120
             V I+E+LK ++ GLHQ+ +  SI ITDVW            TRHVS I+ITLS  EL+  
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 SLGYQPPVPTDQVKPLADYDDGR 143
             S GYQ P  +DQ KP      GR
Sbjct:   121 SPGYQAPAQSDQSKPQYQPQQGR 143

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 48/134 (35%), Positives = 64/134 (47%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLA 137
                +   D W            T  RHV A+ + LSR  LD +  GYQPP     + P +
Sbjct:    87 LHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGPTS 146

Query:   138 DYDDG-RALHGMRD 150
                 G R    +RD
Sbjct:   147 SSSCGPRPRRRVRD 160

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RC74 C11H9orf23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 48/134 (35%), Positives = 64/134 (47%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLA 137
                +   D W            T  RHV A+ + LSR  LD +  GYQPP     + P +
Sbjct:    87 LRFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGPTS 146

Query:   138 DYDDG-RALHGMRD 150
                 G R    +RD
Sbjct:   147 SSSCGPRPRRRVRD 160

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 48/134 (35%), Positives = 63/134 (47%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLA 137
                +   D W            T  RHV A+ + LSR  LD +  GYQPP     + P+ 
Sbjct:    87 LRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPPGAPPGLGPMP 146

Query:   138 DYDDG-RALHGMRD 150
                 G R     RD
Sbjct:   147 SSSCGPRPRRRARD 160

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/110 (39%), Positives = 56/110 (50%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A+  LE   A  VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 127
                +   D W            T  RHV A+ + LSR  LD +  GYQPP
Sbjct:    87 LRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1306576 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/110 (39%), Positives = 56/110 (50%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A++ LE      VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALARLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 127
                +   D W            T  RHV A+ + LSR  LD S  GYQPP
Sbjct:    87 LRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1BQE8 RPP25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 43/142 (30%), Positives = 75/142 (52%)

Query:     1 MDRYQKVEKPKTETAIS-EN------ELRITAQGRLRNYISYAISLLEEKGANEVVLKAT 53
             M+ ++KV   + E+ +   N      E+++    ++RN +S+A++ +E KG+ ++V    
Sbjct:     1 MENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGC 60

Query:    54 GRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWXXXX----XXXXXXXTTRHVSAIT 109
             GRA+ KT+   E++KR++ GLHQ T      + +VW                 ++V +I 
Sbjct:    61 GRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSIC 120

Query:   110 ITLSRKELDSSSLGYQPPVPTD 131
             I LSR  LD +  GYQPP P +
Sbjct:   121 ILLSRDPLDPNQTGYQPPEPRE 142

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

MGI|MGI:1917211 Rpp25l "ribonuclease P/MRP 25 subunit-like" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 43/110 (39%), Positives = 55/110 (50%)

Query:    20 ELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTS 79
             E+R+    ++RN +  A+  LE      VV   +GRA  K V  AE++KRRV GLHQ T 
Sbjct:    27 EMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTK 86

Query:    80 TGSIDITDVWXXXXXXXXXXXTT--RHVSAITITLSRKELDSSSLGYQPP 127
                +   D W            T  RHV A+ + LSR  LD S  GYQPP
Sbjct:    87 LRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam01918	67	pfam01918, Alba, Alba	2e-19
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	5e-11
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	5e-11
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	8e-10
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	3e-07

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 19 NELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLHQ- 76
          N + ++++  + NY+  A+ LLE  GA+EVVLK  GRAI+K V +AE+LKRR   GLHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 77 NTSTGSI 83
          N  T ++
Sbjct: 61 NVITSTV 67

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 31  NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
           NY+   ++   E GA+EV++KA GRAI+K V +AE+++ R +          + I D+  
Sbjct: 16  NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFI--------PDVQIKDIKI 66

Query: 91  PLEEGLLPLETTRHVSAITITLSRK 115
             EE       TR+VS I I L++K
Sbjct: 67  GTEELEGEDGRTRNVSTIEIVLAKK 91

Length = 91

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 11/86 (12%)

Query: 31  NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDI-TDVW 89
           NY+   ++   + GA EVV+KA GRAI+K V +AE+++ R +    +     I I T+  
Sbjct: 16  NYVLAVLTQFNQ-GAKEVVIKARGRAISKAVDVAEIVRNRFL---PDVEIKEIKIGTEEV 71

Query: 90  EPLEEGLLPLETTRHVSAITITLSRK 115
              E+G        +VS I I L +K
Sbjct: 72  TS-EDG-----RESNVSTIEIVLEKK 91

Length = 91

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 41  EEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITD---VWEPLEEGLL 97
           E     EVV+K  G+AI K + +A   +R       +  TG++++ D     E  ++   
Sbjct: 36  EGLKLEEVVVKGMGKAIEKALSLALHFQRE-KNYKVDVRTGTVEVVDEIVEDEDDDDDEE 94

Query: 98  PLETTRHVSAITI 110
           P    R VSA+ +
Sbjct: 95  PETRKRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 31  NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWE 90
           NY+   ++ L   GA+EV++KA GRAI++ V +AE+++ R +          I I  +  
Sbjct: 13  NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFI--------PDIKIKKIKI 63

Query: 91  PLEEGLLPLETTRHVSAITITLSR 114
             EE         +VS I I L++
Sbjct: 64  GTEEIKSEQGREVNVSTIEIVLAK 87

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.83
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.79
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.78
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.67
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.37
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	97.13
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	95.94
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	95.62
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	93.37
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.59
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	87.54
PTZ00146	293	fibrillarin; Provisional	84.13

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.3e-46  Score=322.35  Aligned_cols=142  Identities=44%  Similarity=0.642  Sum_probs=136.9

Q ss_pred             CCCcccccCCCCCCCCCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEE
Q 024048            1 MDRYQKVEKPKTETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTST   80 (273)
Q Consensus         1 MD~Y~rV~kp~~e~p~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~I   80 (273)
                      ||.|++|.||.++.|++.|+|||+.+++++|||.||+.+|+++..+.|||+|||+||+|||+||||||||++||||+|.|
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeeeeeccCCCccceeeeeeeeEEEEEecccCCCCCCCcCCCCCCCCCccCCCcCcc
Q 024048           81 GSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKELDSSSLGYQPPVPTDQVKPLADYDDG  142 (273)
Q Consensus        81 ssv~I~De~EP~eEGL~~l~~tR~VS~I~ItLSk~~LD~~~pGYQ~Plp~~qvk~~~~~~~~  142 (273)
                      .+++|+|.|+|.+|||++++++||||+|+|+||+++||++++|||+|.|..+.+.+..-++.
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~  142 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYS  142 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcc
Confidence            99999999999999999999999999999999999999999999999998887776655553

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.83  E-value=4.3e-20  Score=146.70  Aligned_cols=90  Identities=33%  Similarity=0.462  Sum_probs=74.2

Q ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCC
Q 024048           16 ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEG   95 (273)
Q Consensus        16 ~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEG   95 (273)
                      ..+|+|+|++|+ +.+||.+++.+|+ ++.++|+|||+|+||+|||+|||+||+|+...+   ++..+++.++-...++|
T Consensus         2 ~~en~i~Ig~kp-vmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v---~v~~I~i~se~i~~~~g   76 (91)
T PRK04015          2 AEENVVLVGKKP-VMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDV---EIKEIKIGTEEVTSEDG   76 (91)
T ss_pred             CCCCEEEEcCCc-HHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCe---EEEEEEeccEEeecCCC
Confidence            468999999985 5599999999998 589999999999999999999999999985445   45555554443333466


Q ss_pred             CccceeeeeeeeEEEEEecc
Q 024048           96 LLPLETTRHVSAITITLSRK  115 (273)
Q Consensus        96 L~~l~~tR~VS~I~ItLSk~  115 (273)
                           .+|+||+|+|+|+++
T Consensus        77 -----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         77 -----RESNVSTIEIVLEKK   91 (91)
T ss_pred             -----cEEEEEEEEEEEecC
Confidence                 789999999999874

>TIGR00285 DNA-binding protein Alba

Probab=99.79  E-value=1e-18  Score=137.69  Aligned_cols=87  Identities=33%  Similarity=0.471  Sum_probs=75.7

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL   97 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~   97 (273)
                      +|.|+|++|+-| |||..++.+|++ +.++|+|||+|+||+|||+|||+||+|+...+   ++..+++.++-.+.++|  
T Consensus         1 e~~i~vG~KPvm-nYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v---~v~~I~i~te~~~~~~G--   73 (87)
T TIGR00285         1 ENVVYIGNKPVM-NYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDI---KIKKIKIGTEEIKSEQG--   73 (87)
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCc---eEEEEEeccEEeecCCC--
Confidence            589999999766 999999999984 89999999999999999999999999985544   67777776666666778  


Q ss_pred             cceeeeeeeeEEEEEec
Q 024048           98 PLETTRHVSAITITLSR  114 (273)
Q Consensus        98 ~l~~tR~VS~I~ItLSk  114 (273)
                         .+|+||+|+|+|++
T Consensus        74 ---~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 ---REVNVSTIEIVLAK   87 (87)
T ss_pred             ---ceeeEEEEEEEEeC
Confidence               78999999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.78  E-value=3.2e-18  Score=134.72  Aligned_cols=88  Identities=36%  Similarity=0.524  Sum_probs=76.6

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCceeeeEEEEEEeeeeeeeccCC
Q 024048           17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLHQNTSTGSIDITDVWEPLEEG   95 (273)
Q Consensus        17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLhQ~t~Issv~I~De~EP~eEG   95 (273)
                      ++|+|+|++|+-+ |||-.++++|++ +.++|+|||+|+||||||++|||+|.|| |+    ++|..+++.++-...++|
T Consensus         3 ~envV~vG~KPvm-NYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p~----v~ik~Iki~se~~~~~~g   76 (91)
T COG1581           3 EENVVLVGKKPVM-NYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPD----VQIKDIKIGTEELEGEDG   76 (91)
T ss_pred             CccEEEEcCcchH-HHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCCC----ceEEEEEecceeeecCCC
Confidence            4699999999777 999999999986 7999999999999999999999999998 44    478888887665556677


Q ss_pred             CccceeeeeeeeEEEEEecc
Q 024048           96 LLPLETTRHVSAITITLSRK  115 (273)
Q Consensus        96 L~~l~~tR~VS~I~ItLSk~  115 (273)
                           .+++||+|+|.|.+.
T Consensus        77 -----r~~~VS~IeI~L~k~   91 (91)
T COG1581          77 -----RTRNVSTIEIVLAKK   91 (91)
T ss_pred             -----ceeeEEEEEEEEecC
Confidence                 688999999999873

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.67  E-value=4.9e-16  Score=115.65  Aligned_cols=64  Identities=41%  Similarity=0.639  Sum_probs=57.4

Q ss_pred             CEEEEcCCCchHHHHHHHHHHH---hhcCCCEEEEEEcchhHHHHHHHHHHHHHHhC-CceeeeEEEE
Q 024048           19 NELRITAQGRLRNYISYAISLL---EEKGANEVVLKATGRAINKTVMIAELLKRRVV-GLHQNTSTGS   82 (273)
Q Consensus        19 NeIrVt~k~~irnYV~yA~~LL---~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~-GLhQ~t~Iss   82 (273)
                      |+|+|++++++++||.+|+++|   ++.+.++|+|+|+|+||+|||+|||+||+++. +|||++.+.+
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~   68 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS   68 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence            7999999999999999999999   44579999999999999999999999999994 8999988765

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.37  E-value=3.2e-12  Score=109.07  Aligned_cols=93  Identities=25%  Similarity=0.381  Sum_probs=67.2

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhc-------------------C------------CCEEEEEEcchhHHHHHHHHHH
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEK-------------------G------------ANEVVLKATGRAINKTVMIAEL   66 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~-------------------g------------~~eVvIkA~GkAIsKAV~VAEI   66 (273)
                      ++.|+|+++++|-..|..+.++|...                   +            .++|+|||||+||+||++||.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            68999999999999999999999621                   1            2799999999999999999999


Q ss_pred             HHHHhCCceeeeEEEEEEeeeeeeecc------------------CCCccceeeeeeeeEEEE
Q 024048           67 LKRRVVGLHQNTSTGSIDITDVWEPLE------------------EGLLPLETTRHVSAITIT  111 (273)
Q Consensus        67 LKrRi~GLhQ~t~Issv~I~De~EP~e------------------EGL~~l~~tR~VS~I~It  111 (273)
                      +++.- ++-..+.++||.+.|++++.+                  +..++..++|+||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98876 566679999999999999653                  456778899999999984

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=97.13  E-value=0.0012  Score=64.46  Aligned_cols=13  Identities=23%  Similarity=0.064  Sum_probs=6.9

Q ss_pred             eeeeeeeEEEEEe
Q 024048          101 TTRHVSAITITLS  113 (273)
Q Consensus       101 ~tR~VS~I~ItLS  113 (273)
                      .+|..|.|+=.+.
T Consensus       287 Re~Taski~k~~i  299 (465)
T KOG3973|consen  287 RERTASKIHKLSI  299 (465)
T ss_pred             hhhhhhhhccccc
Confidence            3455566655443

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=95.94  E-value=0.031  Score=60.39  Aligned_cols=11  Identities=18%  Similarity=0.166  Sum_probs=6.0

Q ss_pred             CccccCCCCCC
Q 024048          190 RSFWGHGRRYD  200 (273)
Q Consensus       190 ~~~~g~grg~~  200 (273)
                      +||||-|+|++
T Consensus      1233 gGfrnnggGdy 1243 (1282)
T KOG0921|consen 1233 GGFRNNGGGDY 1243 (1282)
T ss_pred             CccccCCCCCC
Confidence            34666566544

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=95.62  E-value=0.035  Score=60.01  Aligned_cols=8  Identities=38%  Similarity=0.596  Sum_probs=4.0

Q ss_pred             eeeeeeec
Q 024048           85 ITDVWEPL   92 (273)
Q Consensus        85 I~De~EP~   92 (273)
                      ..|+|.-+
T Consensus      1081 ~VDdWIkl 1088 (1282)
T KOG0921|consen 1081 RVDDWIKL 1088 (1282)
T ss_pred             EeeceeeE
Confidence            34555544

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=93.37  E-value=0.16  Score=49.92  Aligned_cols=7  Identities=43%  Similarity=0.881  Sum_probs=3.3

Q ss_pred             cCCCCCC
Q 024048          194 GHGRRYD  200 (273)
Q Consensus       194 g~grg~~  200 (273)
                      |.|+||-
T Consensus       379 GGGggyq  385 (465)
T KOG3973|consen  379 GGGGGYQ  385 (465)
T ss_pred             CCCCCCc
Confidence            4444554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.59  E-value=0.086  Score=54.22  Aligned_cols=12  Identities=25%  Similarity=0.263  Sum_probs=7.5

Q ss_pred             hHHHHHHHHHHH
Q 024048           29 LRNYISYAISLL   40 (273)
Q Consensus        29 irnYV~yA~~LL   40 (273)
                      ++.||..+..-|
T Consensus       390 ~q~yikkl~~~l  401 (556)
T PF05918_consen  390 TQAYIKKLKQAL  401 (556)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            456666666666

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=87.54  E-value=13  Score=29.70  Aligned_cols=51  Identities=20%  Similarity=0.314  Sum_probs=35.1

Q ss_pred             CEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHHh
Q 024048           19 NELRITAQGRLRNYISYAISLLEEKGANEVVLKATG-RAINKTVMIAELLKRRV   71 (273)
Q Consensus        19 NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G-kAIsKAV~VAEILKrRi   71 (273)
                      +.++|+++++....-..-...|.+  ...+.|.|+| .|+++||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~p~~vAgAIa~~lre--~~~v~lqaiGa~AvnqAvKAIAiAR~~l   53 (86)
T PF04232_consen    2 EVLKVSSKSNPNAVAGAIAGVLRE--GGKVELQAIGAGAVNQAVKAIAIARGYL   53 (86)
T ss_dssp             -EEEE-TT--HHHHHHHHHHHHHH--TSEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHhc--CCcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence            468999999997766666667765  3699999999 78888887766666554

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

>PTZ00146 fibrillarin; Provisional

Probab=84.13  E-value=1.8  Score=41.44  Aligned_cols=20  Identities=10%  Similarity=0.109  Sum_probs=8.2

Q ss_pred             CCeeeeeeecc-hhHHHHHhh
Q 024048          225 GNCLLAFSCSY-SLSFILAKQ  244 (273)
Q Consensus       225 g~~~~~~~~~~-~~~~~~~~~  244 (273)
                      |..++-.-|+. .++..||+.
T Consensus       133 G~~VLDLGaG~G~~t~~lAdi  153 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDL  153 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHH
Confidence            34444444443 233344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
2h9u_A	102	Crystal Structure Of The Archaea Specific Dna Bindi		3e-04

>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding Protein Length = 102

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 31  NYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWX 90
           NY+   ++ L E+G N+VV+KA GR IN+ V   E++++R     +N     I I D   
Sbjct: 18  NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIEIKDIKI-DSQE 73
Query: 91  XXXXXXXXXXTTRHVSAITITLSR 114
                      TR VS+I I L +
Sbjct: 74  IEVQTPEGQTRTRRVSSIEICLEK 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	1e-33
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	4e-26
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	5e-26
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	5e-24
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	1e-21
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	6e-10
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	4e-06
1vm0_A	130	Unknown protein; structural genomics, protein stru	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A* Length = 102

 Score =  117 bits (294), Expect = 1e-33
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 14  TAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVG 73
                 E+RI  +  + NY+   ++ L E+G N+VV+KA GR IN+ V   E++++R   
Sbjct: 2   ACEGAPEVRIGRKP-VMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAK 60

Query: 74  LHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKE 116
             +      I I D  E   +       TR VS+I I L +  
Sbjct: 61  NIE---IKDIKI-DSQEIEVQTPEGQTRTRRVSSIEICLEKAG 99

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A Length = 97

 Score = 97.7 bits (243), Expect = 4e-26
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 12  TETAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV 71
           + T    N + I  +  + NY+  A++LL + G +E+V+KA GRAI+K V   E+++ R 
Sbjct: 3   SGTPTPSNVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF 60

Query: 72  VGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRK 115
             L        I +       ++G         VS I I + +K
Sbjct: 61  --LPDKIEIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 97

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A* Length = 89

 Score = 96.9 bits (241), Expect = 5e-26
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 16  ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLH 75
           ++E+ + +  +  + NY+   ++ L E GA+EVV+KA GRAI++ V +AE+++ R     
Sbjct: 1   MAEHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FM 55

Query: 76  QNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSR 114
                  I I       E+G        +VS I I L++
Sbjct: 56  PGVKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 89

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 91

 Score = 91.9 bits (228), Expect = 5e-24
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 18  ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77
           EN + I  +  + NY+   ++ +   G +EV+LKA G AI++ V +AE+++ R      +
Sbjct: 4   ENVVYIGNKP-VMNYVLAVVTQMNG-GTSEVILKARGIAISRAVDVAEIVRNR---FIPD 58

Query: 78  TSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSR 114
               +IDI        EG     T  +VSAI I L +
Sbjct: 59  IQIENIDICTEEIIGNEG-----TATNVSAIEIQLRK 90

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1 Length = 87

 Score = 85.3 bits (211), Expect = 1e-21
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 18  ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77
           +N + I  +  + NY+   ++ L     +EV++KA G+AINK V +AE+++ R     ++
Sbjct: 2   DNVVLIGKKP-VMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSR 114
                I+I        +G        +VS I I L++
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A Length = 89

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 16/88 (18%)

Query: 29  LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDI-TD 87
           + +++   I L  + G +EV+LK TGR I+K V +   LK R   L       ++   ++
Sbjct: 16  VEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDR---LGDGVQLVNVQTGSE 71

Query: 88  VWEPLEEGLLPLETTRHVSAITITLSRK 115
           V +            R +S I + L R 
Sbjct: 72  VRD-----------RRRISYILLRLKRV 88

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae} Length = 140

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 41  EEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLLPLE 100
            ++G++ V +   G+A+ KT+ +    + +         T +I++ D      +  + +E
Sbjct: 56  HKQGSSYVAVLGMGKAVEKTLALGCHFQDQ-KNKKIEVYTKTIEVLDEVITEGQADIDME 114

Query: 101 T------------TRHVSAITI 110
           +             R VS + +
Sbjct: 115 SDVEDDDKETQLKKRAVSGVEL 136

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 12  TETAISENELRITAQGR-LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRR 70
              +  +N ++++   + L  Y++ A   +++    +V L A G AI   V + E+LK  
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN--DVELSALGMAIATVVTVTEILKNN 71

Query: 71  VVGLHQNTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKE 116
              + +   T  +DI D                  + I ITL + E
Sbjct: 72  GFAVEKKIMTSIVDIKDD---------ARGRPVQKAKIEITLVKSE 108

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 40/261 (15%), Positives = 74/261 (28%), Gaps = 61/261 (23%)

Query: 2   DRYQKVEKPKTETAIS-------ENELRITAQGRLRNYISYAISLLEEKGAN--EVVLKA 52
           D ++ V   K  T I          E R       + +   ++       A+   ++L  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYR-------KMFDRLSVF---PPSAHIPTILLSL 394

Query: 53  TGRAINKTV---MIAELLKRRVVGLHQNTSTGSI-DITDVWEPLEEGLLPLETTRHVSAI 108
               + K+    ++ +L K  +V      ST SI  I             LE    +   
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY------------LELKVKLENE 442

Query: 109 TITLSRKELDSSSLGYQPPVPTDQVKPLADYDDG-----RALHGMRDKGRRQARNGGNNN 163
              L R  +D     Y  P   D    +  Y D         H +     +   +     
Sbjct: 443 Y-ALHRSIVDH----YNIPKTFDSDDLIPPYLDQYFYSHIGHH-L-----KNIEHPERMT 491

Query: 164 GVPE-YNNGHWDGGAGYGGRGRGRAAGRSFWGHGRRYDGNMQQESEYYNGYGGSGALPPQ 222
                + +  +          + R    ++   G     N  Q+ ++Y  Y        +
Sbjct: 492 LFRMVFLDFRFL-------EQKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYE 542

Query: 223 GRGNCLLAFSCSYSLSFILAK 243
              N +L F      + I +K
Sbjct: 543 RLVNAILDFLPKIEENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.93
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.92
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.91
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.87
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.83
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.73
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.69
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.12
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	88.94
2ek0_A	90	Stage V sporulation protein S (spovs) related Pro;	80.61

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.93  E-value=2.6e-25  Score=178.46  Aligned_cols=92  Identities=34%  Similarity=0.492  Sum_probs=84.8

Q ss_pred             CCEEEEcCCCchHHHHHHHH-HHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccC
Q 024048           18 ENELRITAQGRLRNYISYAI-SLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEE   94 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~-~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eE   94 (273)
                      +|+|+|++|+. .|||.+|+ .+|+ ++.++|+|||+|+||+|||+||||||+|+ ++|| |.++|++.++.|++|   +
T Consensus         6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            69999999988 59999999 9998 58999999999999999999999999999 8999 999999999999855   5


Q ss_pred             CCccceeeeeeeeEEEEEecccC
Q 024048           95 GLLPLETTRHVSAITITLSRKEL  117 (273)
Q Consensus        95 GL~~l~~tR~VS~I~ItLSk~~L  117 (273)
                      |++   ++|+||+|+|+|+++|.
T Consensus        81 g~~---~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           81 GQT---RTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             SCE---EEEEEEEEEEEEEECSS
T ss_pred             Ccc---ceeEeeeEEEEEEccCC
Confidence            633   79999999999999875

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.92  E-value=1.6e-24  Score=169.80  Aligned_cols=86  Identities=31%  Similarity=0.570  Sum_probs=78.8

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccC
Q 024048           17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEE   94 (273)
Q Consensus        17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eE   94 (273)
                      ++|+|+|++|+ +.+||.+|+.+|+ ++.++|+|||+|+||+|||+||||||+|+ +||| |.++|+|.++.|     +|
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999998 7799999999998 58999999999999999999999999999 8999 999999888866     36


Q ss_pred             CCccceeeeeeeeEEEEEec
Q 024048           95 GLLPLETTRHVSAITITLSR  114 (273)
Q Consensus        95 GL~~l~~tR~VS~I~ItLSk  114 (273)
                      |     .+|+||+|+|+|+|
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            6     78999999999986

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.91  E-value=2.8e-24  Score=171.03  Aligned_cols=90  Identities=33%  Similarity=0.527  Sum_probs=80.0

Q ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCC--c-eeeeEEEEEEeeeeee
Q 024048           14 TAISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVG--L-HQNTSTGSIDITDVWE   90 (273)
Q Consensus        14 ~p~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~G--L-hQ~t~Issv~I~De~E   90 (273)
                      .+.++|+|+|++++ +.+||.+|+.||+ ++.++|+|||+|+||+|||+||||||+|+.+  | ||.++|++.++.|+  
T Consensus         5 ~~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e--   80 (97)
T 2bky_A            5 TPTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ--   80 (97)
T ss_dssp             ----CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET--
T ss_pred             cCCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC--
Confidence            36678999999998 8899999999999 5899999999999999999999999999954  8 89999999999874  


Q ss_pred             eccCCCccceeeeeeeeEEEEEecc
Q 024048           91 PLEEGLLPLETTRHVSAITITLSRK  115 (273)
Q Consensus        91 P~eEGL~~l~~tR~VS~I~ItLSk~  115 (273)
                         ||     .+|+||+|+|+|+++
T Consensus        81 ---~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           81 ---DG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             ---TS-----CEEEEEEEEEEEEEC
T ss_pred             ---CC-----cEEEeeEEEEEEEcC
Confidence               66     799999999999974

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=3.3e-24  Score=167.42  Aligned_cols=84  Identities=30%  Similarity=0.534  Sum_probs=73.5

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHh-CCce-eeeEEEEEEeeeeeeeccCC
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRV-VGLH-QNTSTGSIDITDVWEPLEEG   95 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi-~GLh-Q~t~Issv~I~De~EP~eEG   95 (273)
                      +|+|+|++| ++.+||.+|+.+|++ + ++|+|||+|+||+|||+||||||+|+ ++|| |.++|++.++.|+     ||
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-----~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-----DG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-----CC
Confidence            699999999 899999999999995 6 99999999999999999999999999 8899 9999999988874     56


Q ss_pred             CccceeeeeeeeEEEEEec
Q 024048           96 LLPLETTRHVSAITITLSR  114 (273)
Q Consensus        96 L~~l~~tR~VS~I~ItLSk  114 (273)
                           .+|+||+|+|+|++
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 78999999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.87  E-value=8.4e-22  Score=155.32  Aligned_cols=89  Identities=34%  Similarity=0.475  Sum_probs=80.1

Q ss_pred             CCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCC
Q 024048           17 SENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGL   96 (273)
Q Consensus        17 ~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL   96 (273)
                      ++|.|+|++| ++.+||.+|+.+|+ ++.++|+|||+|+||+|||++||+||+|+..   .++++++++.++|.+.++| 
T Consensus         3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~~---~v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFIP---DIQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTCT---TCEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhccC---CcEEEEEEeeeEEeecCCC-
Confidence            4789999988 56699999999998 5899999999999999999999999999843   4689999999999999999 


Q ss_pred             ccceeeeeeeeEEEEEecc
Q 024048           97 LPLETTRHVSAITITLSRK  115 (273)
Q Consensus        97 ~~l~~tR~VS~I~ItLSk~  115 (273)
                          .+|+||+|+|+|+++
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                899999999999984

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.83  E-value=1.4e-20  Score=147.65  Aligned_cols=85  Identities=26%  Similarity=0.307  Sum_probs=71.1

Q ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCC
Q 024048           16 ISENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEG   95 (273)
Q Consensus        16 ~~~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEG   95 (273)
                      .++|+|+|+++ ++.|||.+|+.+|+ ++.++|+|||+|+||+|||+|||+||+|+.+.||   +.++++..+     + 
T Consensus         4 ~~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~---i~~i~i~se-----~-   72 (89)
T 2bky_X            4 KLNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ---LVNVQTGSE-----V-   72 (89)
T ss_dssp             CCEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEE---EEEEEEEEE-----E-
T ss_pred             CCCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceE---EEEEEeccc-----c-
Confidence            35677788776 78899999999999 5899999999999999999999999999987765   444444433     2 


Q ss_pred             CccceeeeeeeeEEEEEecc
Q 024048           96 LLPLETTRHVSAITITLSRK  115 (273)
Q Consensus        96 L~~l~~tR~VS~I~ItLSk~  115 (273)
                          .++|+||+|+|+|+++
T Consensus        73 ----~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ----RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ----ETTEEEEEEEEEEEEC
T ss_pred             ----CcceEeeeEEEEEEec
Confidence                3789999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.73  E-value=1.4e-17  Score=138.78  Aligned_cols=91  Identities=26%  Similarity=0.365  Sum_probs=71.2

Q ss_pred             CCCCCEEEEcC-CCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeecc
Q 024048           15 AISENELRITA-QGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLE   93 (273)
Q Consensus        15 p~~~NeIrVt~-k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~e   93 (273)
                      +.++|+|+|+. +.++.+||.+|+.+|+  ++++|+|||||+||++||+||||||+|+-..++.+.|++.++.++     
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~-----   89 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-----   89 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence            46799999996 3677799999999997  589999999999999999999999999755556666677776544     


Q ss_pred             CCCccceeeeeeeeEEEEEeccc
Q 024048           94 EGLLPLETTRHVSAITITLSRKE  116 (273)
Q Consensus        94 EGL~~l~~tR~VS~I~ItLSk~~  116 (273)
                      ++    .+..++|.|+|+|.+.+
T Consensus        90 ~~----~r~v~~skIEI~L~k~~  108 (130)
T 1vm0_A           90 AR----GRPVQKAKIEITLVKSE  108 (130)
T ss_dssp             --------CEEEEEEEEEEEECT
T ss_pred             CC----CcccccceEEEEEEecC
Confidence            11    14556799999999864

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3e-16  Score=132.02  Aligned_cols=108  Identities=14%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             ccccCCCCCCCCC----CCEEEEcCCCchHHHHHHHHHHHhh---cCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceee
Q 024048            5 QKVEKPKTETAIS----ENELRITAQGRLRNYISYAISLLEE---KGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN   77 (273)
Q Consensus         5 ~rV~kp~~e~p~~----~NeIrVt~k~~irnYV~yA~~LL~e---~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~   77 (273)
                      +.+.++.+..|..    +|+|+|++++++...+..|.+||+.   .+.++|+|||||+||+||+++|..++++. ++...
T Consensus        13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~   91 (140)
T 3iab_B           13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIE   91 (140)
T ss_dssp             -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEE
T ss_pred             CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEE
Confidence            4455554445544    8999999999999999999999974   16899999999999999999999999974 57788


Q ss_pred             eEEEEEEeeeeeeeccCC------------CccceeeeeeeeEEEEEe
Q 024048           78 TSTGSIDITDVWEPLEEG------------LLPLETTRHVSAITITLS  113 (273)
Q Consensus        78 t~Issv~I~De~EP~eEG------------L~~l~~tR~VS~I~ItLS  113 (273)
                      +.++||++.|+++|.++.            .+...++|+||+|||.|+
T Consensus        92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy  139 (140)
T 3iab_B           92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY  139 (140)
T ss_dssp             EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred             EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence            999999999999998664            577889999999999986

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.12  E-value=2.6e-05  Score=66.69  Aligned_cols=90  Identities=19%  Similarity=0.165  Sum_probs=70.3

Q ss_pred             EEEcCCCchHHHHHHHHHHHhh-----cCCCEEEEEEcchhHHHHHHHHHHHHHHh----CCceeeeEEEEEEeeeeeee
Q 024048           21 LRITAQGRLRNYISYAISLLEE-----KGANEVVLKATGRAINKTVMIAELLKRRV----VGLHQNTSTGSIDITDVWEP   91 (273)
Q Consensus        21 IrVt~k~~irnYV~yA~~LL~e-----~g~~eVvIkA~GkAIsKAV~VAEILKrRi----~GLhQ~t~Issv~I~De~EP   91 (273)
                      +.|+++..|+..|+.-.++|+.     ...+.|.|.+.|..|.|++++.||+|+++    +.|||++++++.....+   
T Consensus        47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~~---  123 (158)
T 3iab_A           47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKRE---  123 (158)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred             EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCCc---
Confidence            4599999999999999998851     25689999999999999999999999987    34999999998755432   


Q ss_pred             ccCCC-ccceeeeeeeeEEEEEeccc
Q 024048           92 LEEGL-LPLETTRHVSAITITLSRKE  116 (273)
Q Consensus        92 ~eEGL-~~l~~tR~VS~I~ItLSk~~  116 (273)
                         |- +-++++-+||-+-+.+++++
T Consensus       124 ---grNELle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          124 ---GRNELQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             --------CCCCEEEEEEEEEEESSS
T ss_pred             ---cccHHHHhhcCCCEEEEEEeccc
Confidence               22 22456668888777778764

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=88.94  E-value=0.077  Score=42.73  Aligned_cols=8  Identities=13%  Similarity=0.422  Sum_probs=3.8

Q ss_pred             eeeeeEEE
Q 024048          103 RHVSAITI  110 (273)
Q Consensus       103 R~VS~I~I  110 (273)
                      +++..|.|
T Consensus        53 ~~lg~v~I   60 (119)
T 1b34_A           53 VQLETLSI   60 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEcceEEE
Confidence            44554444

>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A

Probab=80.61  E-value=18  Score=28.09  Aligned_cols=51  Identities=22%  Similarity=0.382  Sum_probs=37.8

Q ss_pred             CEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHHh
Q 024048           19 NELRITAQGRLRNYISYAISLLEEKGANEVVLKATG-RAINKTVMIAELLKRRV   71 (273)
Q Consensus        19 NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~G-kAIsKAV~VAEILKrRi   71 (273)
                      +.+.|.++++....-..--..+.+  ...|.|.++| .|++.||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l   53 (90)
T 2ek0_A            2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI   53 (90)
T ss_dssp             CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence            468999999996666665666665  3699999999 68998887555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	2e-30
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	5e-30
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	9e-28
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	1e-25
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	4e-24

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score =  107 bits (268), Expect = 2e-30
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 19  NELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNT 78
           N + I  +  + NY+  A++LL + G +E+V+KA GRAI+K V   E+++ R   L    
Sbjct: 2   NVVLIGKKP-VMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  STGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRK 115
               I +       ++G         VS I I + +K
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIRKK 89

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  105 bits (265), Expect = 5e-30
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 18  ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77
           E+ + +  +  + NY+   ++ L E GA+EVV+KA GRAI++ V +AE+++ R       
Sbjct: 1   EHVVYVGNKP-VMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSR 114
                I I       E+G        +VS I I L++
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLAK 87

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  100 bits (250), Expect = 9e-28
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 18  ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77
           +N + I  +  + NY+   ++ L     +EV++KA G+AINK V +AE+++ R     ++
Sbjct: 2   DNVVLIGKKP-VMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSR 114
                I+I        +G        +VS I I L++
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLAK 87

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 94.4 bits (235), Expect = 1e-25
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 18  ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQN 77
            NE+ +     + +++   I L  + G +EV+LK TGR I+K V +   LK R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ- 59

Query: 78  TSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRK 115
               ++         E         R +S I + L R 
Sbjct: 60  --LVNVQTGS-----EVR-----DRRRISYILLRLKRV 85

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.4 bits (227), Expect = 4e-24
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 18  ENELRITAQGR-LRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQ 76
           +N ++++   + L  Y++ A   +++   N+V L A G AI   V + E+LK     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  NTSTGSIDITDVWEPLEEGLLPLETTRHVSAITITLSRKE 116
              T  +DI D                  + I ITL + E
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEITLVKSE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.93
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.91
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.89
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.84
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.76

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.93  E-value=1.3e-25  Score=174.63  Aligned_cols=89  Identities=31%  Similarity=0.496  Sum_probs=84.3

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL   97 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~   97 (273)
                      .|+|+|++|+.| |||.+|+.+|++ +.++|+|||+|+||+|||+|||++|+|+  |||.++|++++|.++|+|.+||  
T Consensus         1 ~n~I~IG~Kp~m-nYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSSCHH-HHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCCcHH-HHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            489999999866 999999999984 8999999999999999999999999998  8999999999999999999999  


Q ss_pred             cceeeeeeeeEEEEEecc
Q 024048           98 PLETTRHVSAITITLSRK  115 (273)
Q Consensus        98 ~l~~tR~VS~I~ItLSk~  115 (273)
                         ++|+||+|+|+|+|+
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               799999999999985

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.4e-24  Score=168.05  Aligned_cols=87  Identities=33%  Similarity=0.508  Sum_probs=81.6

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL   97 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~   97 (273)
                      +|+|+|++|+.| +||.+|+.+|++ +.++|+|||+|+||+|||+|||+||+|   +||.++|+++++.++|+|.+||  
T Consensus         1 en~I~Ig~Kp~~-~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r---~~~~~~i~~i~i~se~~~~e~g--   73 (87)
T d1nfja_           1 EHVVYVGNKPVM-NYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPGVKVKEIKIDTEELESEQG--   73 (87)
T ss_dssp             CEEEECCSSCHH-HHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHH---TCTTCEEEEEEEEEEECCCBTT--
T ss_pred             CCEEEEcCCcHH-HHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHh---ccCCcEEEEEEEccEEEecCCC--
Confidence            699999999755 999999999985 889999999999999999999999999   4788999999999999999999  


Q ss_pred             cceeeeeeeeEEEEEec
Q 024048           98 PLETTRHVSAITITLSR  114 (273)
Q Consensus        98 ~l~~tR~VS~I~ItLSk  114 (273)
                         ++|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~K   87 (87)
T d1nfja_          74 ---RRSNVSTIEIVLAK   87 (87)
T ss_dssp             ---BCCEEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               78999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.89  E-value=3.3e-23  Score=160.31  Aligned_cols=86  Identities=30%  Similarity=0.445  Sum_probs=72.4

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL   97 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~   97 (273)
                      +|+|+|++|+-| +||.+|+.+|++ + ++|+|||+|+||+|||+|||+||+|+.+.|   +|.+++|.++|.|.+||  
T Consensus         2 en~I~Ig~KP~m-~YV~~~~~~~~~-~-~eV~lKArG~aIsrAVdVaEiik~R~~~~~---~i~~i~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKKPVM-NYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDI---KIKKIEIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSSCHH-HHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC---EEEEEEEEEEC--------
T ss_pred             CCEEEEcCCCHH-HHHHHHHHHhcc-C-CeEEEEEcchhhhHHHHHHHHHHHhccCCe---EEEEEEecceEEecCCC--
Confidence            799999999766 999999999997 4 899999999999999999999999986555   67888899999999999  


Q ss_pred             cceeeeeeeeEEEEEec
Q 024048           98 PLETTRHVSAITITLSR  114 (273)
Q Consensus        98 ~l~~tR~VS~I~ItLSk  114 (273)
                         ++|+||+|+|+|+|
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               79999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.84  E-value=2.9e-21  Score=148.93  Aligned_cols=84  Identities=29%  Similarity=0.349  Sum_probs=73.7

Q ss_pred             CCEEEEcCCCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCCCc
Q 024048           18 ENELRITAQGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEGLL   97 (273)
Q Consensus        18 ~NeIrVt~k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEGL~   97 (273)
                      .|+|+|+.+.++.|||.+|+.||++ +.++|+|||+|+||+|||++||+||+|+++.||+++|   ++.++     +|  
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I---~i~sE-----~~--   70 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNV---QTGSE-----VR--   70 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEE---EEEEE-----EE--
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEE---Eeccc-----cC--
Confidence            6999999999999999999999985 8999999999999999999999999999888865544   45444     23  


Q ss_pred             cceeeeeeeeEEEEEecc
Q 024048           98 PLETTRHVSAITITLSRK  115 (273)
Q Consensus        98 ~l~~tR~VS~I~ItLSk~  115 (273)
                         .+|+||+|+|+|.+.
T Consensus        71 ---~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          71 ---DRRRISYILLRLKRV   85 (86)
T ss_dssp             ---TTEEEEEEEEEEEEC
T ss_pred             ---CceEEEEEEEEEEec
Confidence               689999999999874

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.76  E-value=2.2e-18  Score=135.81  Aligned_cols=91  Identities=29%  Similarity=0.422  Sum_probs=76.2

Q ss_pred             CCCEEEEcC-CCchHHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHHhCCceeeeEEEEEEeeeeeeeccCC
Q 024048           17 SENELRITA-QGRLRNYISYAISLLEEKGANEVVLKATGRAINKTVMIAELLKRRVVGLHQNTSTGSIDITDVWEPLEEG   95 (273)
Q Consensus        17 ~~NeIrVt~-k~~irnYV~yA~~LL~e~g~~eVvIkA~GkAIsKAV~VAEILKrRi~GLhQ~t~Issv~I~De~EP~eEG   95 (273)
                      .+|+|+|+. +.++.+||.+|+.+|++  .++|+|||+|+||++||+|||+||+|....|+.++|++.++.++-    +|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~--~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~----~g   74 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQ--YNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDA----RG   74 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHH--HSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhcc--CCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCC----CC
Confidence            479999997 55688999999999986  389999999999999999999999998888898999888886542    23


Q ss_pred             CccceeeeeeeeEEEEEeccc-CC
Q 024048           96 LLPLETTRHVSAITITLSRKE-LD  118 (273)
Q Consensus        96 L~~l~~tR~VS~I~ItLSk~~-LD  118 (273)
                           .+++||.|+|.|.+.+ +|
T Consensus        75 -----r~~~vs~IEI~L~K~~~F~   93 (99)
T d1vm0a_          75 -----RPVQKAKIEITLVKSEKFD   93 (99)
T ss_dssp             ------CEEEEEEEEEEEECTTHH
T ss_pred             -----cccccceEEEEEeeCccHH
Confidence                 6899999999999974 44