Citrus Sinensis ID: 024061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEHHcccccHHHHHHHHHcEEEEccccccEEEEEEEccEEEEEEccccEEEEcccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEccccEEEEccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnqqqadhqietkassethhmqqqqephssdyapypkidpndvapppqnwsnvstatgpapinesaattmpaesnpyvspspiepsssknkLESVKGALSNWGKKAAEATKRAEDLAGNMwqhlktgpsladAAVGRIAQRTKVLAEGGYEKIFrqsfdtvpeeQLLKTYACYlstsagpvVGVLYLSTAklafcsddplsykvgdetqwSYYKVViplsqlkavnpstskakpaekYIQVISVDNHEFWFMGFVHYDSAVKNLLgalgprsl
Flexible Loop (DISEMBL)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKavnpstskakpaEKYIQVISVDNHEFWFMGFVHYDSAVKNLLgalgprsl
Low Complexity Region (SEG)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Disordered region (IsUnstruct)
*********************************************************************************************************************GNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAV**********EKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA******
Disordered Region (DISOPRED)
******************************************************************************************************************DLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLS******************IQVISVDNHEFWFMGFVHYDSAVKNLL*A******
Disordered Region (DISEMBL)
******************************DYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTM*****************************************RAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Disordered Region (DISPRO)
***************************************************************************P***PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9SE96	259	GEM-like protein 1 OS=Ara	yes	no	0.831	0.876	0.692	3e-88
Q8S8F8	299	GLABRA2 expression modula	no	no	0.710	0.648	0.719	9e-82
Q9M063	239	Putative GEM-like protein	no	no	0.728	0.832	0.573	6e-63
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.813	0.816	0.427	2e-51
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.710	0.832	0.408	2e-41
Q9FMW4	219	Putative GEM-like protein	no	no	0.641	0.799	0.379	4e-31
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.641	0.802	0.390	6e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.567	0.738	0.401	3e-30
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.666	0.819	0.366	1e-29

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 197/241 (81%), Gaps = 14/241 (5%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HSSDYAPYPK+DP DV PP          TG      +AATTMPAESNPYVSPSP    +
Sbjct: 28  HSSDYAPYPKLDPTDVTPP----PPQPIPTG------AAATTMPAESNPYVSPSP----A 73

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
            +N ++SVK  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAE
Sbjct: 74  PRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAE 133

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G++
Sbjct: 134 GGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQ 193

Query: 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 267
           T WSYYKVV+P +QLKAVNPSTS+   ++KYIQVIS+DNHEFWFMGFV Y+SAVK+L  A
Sbjct: 194 TLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEA 253

Query: 268 L 268
           +
Sbjct: 254 V 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  303 bits (776), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 141/196 (71%), Positives = 165/196 (84%), Gaps = 2/196 (1%)

Query: 75  NPYVSPSPIEPS--SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLAD 132
           NPY++ SP E S  S K+ +E+VKG L  WGK+ AEA K+ E LAGN WQHL+T PS AD
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 133 AAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKL 192
           AA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKL
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 193 AFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 252
           A+CSD+PLSYK GD+T+WSYYKVVIPL QLKAVNPS S   PAEKYIQVISVDNHEFWFM
Sbjct: 216 AYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFM 275

Query: 253 GFVHYDSAVKNLLGAL 268
           GF++YD AV +L  +L
Sbjct: 276 GFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  240 bits (613), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 157/223 (70%), Gaps = 24/223 (10%)

Query: 49  NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKA 106
           +W+    +  PAP  ++ +++  A SNPYV+ +P E S  S K  +ESVKG L  WG++ 
Sbjct: 29  HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRV 88

Query: 107 AEATKRAEDLAGNMWQH-LKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQ 165
            EA  +AE LAGN WQH L+       AA+GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQ
Sbjct: 89  GEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQ 141

Query: 166 LLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAV 225
           L  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L              VVIPL QLK+V
Sbjct: 142 LQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSV 187

Query: 226 NPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268
           NPS S   PAEKYIQVISVD+HEFWFMGF++Y+ AV +L   L
Sbjct: 188 NPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/241 (42%), Positives = 147/241 (60%), Gaps = 19/241 (7%)

Query: 39  DPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIEPSSSK 89
           +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E  ++ 
Sbjct: 28  EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTN 87

Query: 90  NKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 149
           N LE V G    W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG
Sbjct: 88  NPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGG 140

Query: 150 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV--GDE 207
           +E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +    G E
Sbjct: 141 FESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQE 200

Query: 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 267
           + WSYY+VV+PL+ +  VNP   K  P EKYIQ+ +VD H+FWFMGFV+Y+ A  +LL +
Sbjct: 201 S-WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTS 259

Query: 268 L 268
           +
Sbjct: 260 V 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 125/196 (63%), Gaps = 2/196 (1%)

Query: 75  NPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 134
           NPYV  +    +S K   + V   L+  GKK  +AT++AE L G +  HLK  PS++DAA
Sbjct: 29  NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAA 88

Query: 135 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 194
           + R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AF
Sbjct: 89  MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query: 195 CSDDPLSY--KVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 252
           CSD  +      G     +YYKVV+   ++ +++ ST+  KP+E+Y+ +++ D  EFWFM
Sbjct: 149 CSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Query: 253 GFVHYDSAVKNLLGAL 268
           GFV Y  A   L  AL
Sbjct: 209 GFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 107/187 (57%), Gaps = 12/187 (6%)

Query: 85  PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKV 144
           P+SSK    + KG       K+    K+ +     +    K GP L +    +++   ++
Sbjct: 36  PTSSKFSFLTGKG-------KSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARI 88

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV
Sbjct: 89  LQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSER--SIKV 146

Query: 205 GD---ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAV 261
                E    +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A 
Sbjct: 147 ASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAF 206

Query: 262 KNLLGAL 268
             L  AL
Sbjct: 207 NCLEQAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 106/187 (56%), Gaps = 12/187 (6%)

Query: 85  PSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKV 144
           P+SSK    + KG      KK    T  A D         K GP L +    +++   K+
Sbjct: 36  PTSSKVSYLTGKGKSMLRKKKTDSFTNGARD-------QDKLGPKLTETVKRKLSLGAKI 88

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV
Sbjct: 89  LQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSER--SIKV 146

Query: 205 GD---ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAV 261
                     +YKV IPL ++  VN S +  KP++KY++++++DN +FWFMGFV Y  A 
Sbjct: 147 ASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAF 206

Query: 262 KNLLGAL 268
             L  AL
Sbjct: 207 NCLEKAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 7/162 (4%)

Query: 111 KRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTY 170
           K+ +          K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 171 ACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV----GDETQWSYYKVVIPLSQLKAVN 226
            CYLST+ G + G+L++S+ K+AFCS+   S KV    GD T+  +YKV IPL ++  VN
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSER--SIKVTSPQGDLTRV-HYKVSIPLCKINGVN 163

Query: 227 PSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268
            S +  KP+++Y++V++VDN++FWFMGFV Y  A   L  AL
Sbjct: 164 QSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 112/202 (55%), Gaps = 20/202 (9%)

Query: 71  PAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSL 130
           PA  N +  P+    SS K++  +VK  L           K+ +     +    K  P L
Sbjct: 27  PASFNKFRVPA----SSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKL 73

Query: 131 ADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTA 190
            +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ 
Sbjct: 74  TETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSK 133

Query: 191 KLAFCSDDPLSYKV----GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 246
           K+AFCS+   S KV    GD  +  +YKV IPL ++  VN S +  KP++KY++V++VD 
Sbjct: 134 KMAFCSER--SIKVDSPQGDIIRV-HYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDG 190

Query: 247 HEFWFMGFVHYDSAVKNLLGAL 268
            +FWFMGF+ Y  A   L  AL
Sbjct: 191 FDFWFMGFLSYQKAFNCLEKAL 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
224084586	294	predicted protein [Populus trichocarpa]	0.981	0.911	0.702	1e-106
255545896	267	conserved hypothetical protein [Ricinus	0.970	0.992	0.742	1e-105
224063293	290	predicted protein [Populus trichocarpa]	0.967	0.910	0.719	1e-105
356515708	269	PREDICTED: GEM-like protein 1-like [Glyc	0.879	0.892	0.786	1e-102
255646007	269	unknown [Glycine max]	0.879	0.892	0.786	1e-102
449469813	302	PREDICTED: GEM-like protein 1-like [Cucu	0.926	0.837	0.675	1e-100
153850916	284	GEM-like 1 [Vitis vinifera]	0.886	0.852	0.732	1e-98
225459150	284	PREDICTED: GEM-like 1 [Vitis vinifera]	0.886	0.852	0.729	3e-98
363808044	283	uncharacterized protein LOC100794961 [Gl	0.864	0.833	0.766	7e-98
357465343	258	GLABRA2 expression modulator [Medicago t	0.868	0.918	0.783	1e-93

>gi|224084586|ref|XP_002307347.1| predicted protein [Populus trichocarpa] gi|222856796|gb|EEE94343.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/289 (70%), Positives = 235/289 (81%), Gaps = 21/289 (7%)

Query: 1   MNQQQADHQIETKA--------SSETHHMQQQQ--EPHSSDYAPYPKIDPNDVAPPPQNW 50
           MNQ+Q  H+ +TK          SE H   + +  +PH++DYAPYPK+DP DVAPP  NW
Sbjct: 1   MNQKQDPHEDQTKKPAPSSSDLESEKHVEVKDKISDPHTTDYAPYPKLDPQDVAPPLDNW 60

Query: 51  SNVSTAT-----------GPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGAL 99
           +NVS  +           G  PI  +  TTMPA+SNPYVSP+P+ PSSSKNK+E+VK  L
Sbjct: 61  ANVSMGSTTLSNPAGATQGSPPIAGTTVTTMPADSNPYVSPAPVAPSSSKNKMEAVKDVL 120

Query: 100 SNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFD 159
             WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+
Sbjct: 121 GKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFE 180

Query: 160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPL 219
           TVPEEQL+KT+ACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSYK+G++T+WSYYKVVIPL
Sbjct: 181 TVPEEQLVKTFACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYKIGEQTEWSYYKVVIPL 240

Query: 220 SQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268
            QLKAVNPSTSK K AEKYIQ+ISVDNHEFWFMGFV+YD+AVK+L  AL
Sbjct: 241 HQLKAVNPSTSKVKSAEKYIQIISVDNHEFWFMGFVYYDNAVKSLQEAL 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545896|ref|XP_002514008.1| conserved hypothetical protein [Ricinus communis] gi|223547094|gb|EEF48591.1| conserved hypothetical protein [Ricinus communis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/272 (74%), Positives = 228/272 (83%), Gaps = 7/272 (2%)

Query: 2   NQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
           NQQQ     +  A S  H  +Q   PH+ DYAPYPK+DP DV+PP +NW+    A     
Sbjct: 3   NQQQVIDDTKKPADSPEHDNKQHNHPHTLDYAPYPKLDPIDVSPPQENWAVPPPAE---- 58

Query: 62  INESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMW 121
              +AATTMPAESNPYVSP+P+ PSSSKNK+++VK  L  WGKKAAEATK+AEDLAGNMW
Sbjct: 59  ---AAATTMPAESNPYVSPAPVAPSSSKNKMDAVKDVLGKWGKKAAEATKKAEDLAGNMW 115

Query: 122 QHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPV 181
           QHLKTGPS ADAAVGRIAQ+TKVLAEGGYEK+F+QSF+TVPEEQL KTYACYLSTSAGPV
Sbjct: 116 QHLKTGPSFADAAVGRIAQQTKVLAEGGYEKVFQQSFETVPEEQLQKTYACYLSTSAGPV 175

Query: 182 VGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQV 241
           +GVLYLSTAKLAFCSD+PLSYK G++TQ+SYYKVVIPL QLKAVNPSTSK KP EKYIQ+
Sbjct: 176 IGVLYLSTAKLAFCSDNPLSYKNGEQTQYSYYKVVIPLHQLKAVNPSTSKVKPGEKYIQI 235

Query: 242 ISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL 273
           ISVDNHEFWFMGFVHYDSAVK+L GAL  RS+
Sbjct: 236 ISVDNHEFWFMGFVHYDSAVKSLQGALEHRSV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063293|ref|XP_002301081.1| predicted protein [Populus trichocarpa] gi|222842807|gb|EEE80354.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/271 (71%), Positives = 228/271 (84%), Gaps = 7/271 (2%)

Query: 5   QADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT------- 57
           Q+   +E +  +E     +    H+SDYAPYPK+DP DVAP P+NW+N+ST +       
Sbjct: 15  QSPSDLEPQKLAEVEDKYKNSNSHTSDYAPYPKLDPKDVAPSPENWANLSTGSTTQSKPP 74

Query: 58  GPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLA 117
           GP+PI  +AATTMPAESNPYVSP P+ PSSSKN +E+VK  L  WGKKAAEATK+AEDLA
Sbjct: 75  GPSPIAGTAATTMPAESNPYVSPGPVAPSSSKNTVEAVKDVLGKWGKKAAEATKKAEDLA 134

Query: 118 GNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTS 177
           GNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEE+L+KT+ACYLSTS
Sbjct: 135 GNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEKLVKTFACYLSTS 194

Query: 178 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEK 237
           AGPV+GVLYLSTAKLAFCSD+PLSYKVG+++QWSYYKVVIPL QLKAVNPSTSK   AEK
Sbjct: 195 AGPVMGVLYLSTAKLAFCSDNPLSYKVGEQSQWSYYKVVIPLHQLKAVNPSTSKVNSAEK 254

Query: 238 YIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268
           YIQ+IS DNHEFWFMGFV+YD+AV++L  AL
Sbjct: 255 YIQIISADNHEFWFMGFVYYDNAVQSLQQAL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515708|ref|XP_003526540.1| PREDICTED: GEM-like protein 1-like [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/244 (78%), Positives = 212/244 (86%), Gaps = 4/244 (1%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P+  SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPVTASS 85

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
           +K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 267
           TQWSYYKVVIPL QL+AVN STSK   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 206 TQWSYYKVVIPLHQLRAVNASTSKTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 265

Query: 268 LGPR 271
           L P 
Sbjct: 266 LQPH 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646007|gb|ACU23491.1| unknown [Glycine max]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/244 (78%), Positives = 211/244 (86%), Gaps = 4/244 (1%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P   SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPATASS 85

Query: 88  SKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 147
           +K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 148 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 207
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 267
           TQWSYYKVVIPL QL+AVN STSK   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 206 TQWSYYKVVIPLHQLRAVNASTSKTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 265

Query: 268 LGPR 271
           L P 
Sbjct: 266 LQPH 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469813|ref|XP_004152613.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus] gi|449527647|ref|XP_004170821.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/274 (67%), Positives = 211/274 (77%), Gaps = 21/274 (7%)

Query: 20  HMQQQQEPHSSDYAPYPKIDPNDVAPPP--QNWSNVSTAT-----------------GPA 60
           H        S DY+PYPK+DP+DVAPPP  +NW+ V   +                   A
Sbjct: 25  HTDPDTNHRSGDYSPYPKLDPSDVAPPPLPENWTTVPMGSQPQNPPPPPPQTQPNSEARA 84

Query: 61  PINESAATTMPAESNPYVS--PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAG 118
           PI+E  ATT+P E+NPYVS  P+P  PSSSK+ ++SVK  L  WGK+A EATK+AEDLAG
Sbjct: 85  PISEGNATTLPTEANPYVSAAPAPGNPSSSKHTMDSVKVMLGRWGKRAVEATKKAEDLAG 144

Query: 119 NMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSA 178
           NMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+  PEE+L K YACYLSTSA
Sbjct: 145 NMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSA 204

Query: 179 GPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKY 238
           GPV+G LY+STAKLAFCSD+PLSYKVG+ETQWS YKVVIPL  LK+VNPSTSKAKPAEK+
Sbjct: 205 GPVMGTLYISTAKLAFCSDNPLSYKVGEETQWSLYKVVIPLHHLKSVNPSTSKAKPAEKF 264

Query: 239 IQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRS 272
           IQVIS+DNHEFWFMGFV YDSAVK L  AL P +
Sbjct: 265 IQVISIDNHEFWFMGFVSYDSAVKTLQEALHPNN 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|153850916|gb|ABS52645.1| GEM-like 1 [Vitis vinifera]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/262 (73%), Positives = 215/262 (82%), Gaps = 20/262 (7%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNV--------------------STATGPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V                    S + GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 126
           ATTMP ESNPY+S SP   SS KNK++SVK  L  WGKKAAEATK+AEDLAGNMWQHLKT
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKT 138

Query: 127 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 186
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 187 LSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 246
           LST KLAFCSD PLSYKVG++T+WSYYKVVIPL QLKAVN STSK  PAEKY+Q+ISVDN
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKVVIPLHQLKAVNTSTSKVNPAEKYVQIISVDN 258

Query: 247 HEFWFMGFVHYDSAVKNLLGAL 268
           HEFWFMGFVHYDSAVKNL GAL
Sbjct: 259 HEFWFMGFVHYDSAVKNLQGAL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459150|ref|XP_002285708.1| PREDICTED: GEM-like 1 [Vitis vinifera]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/262 (72%), Positives = 214/262 (81%), Gaps = 20/262 (7%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNV--------------------STATGPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V                    S + GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 126
           ATTMP ESNPY+S SP   SS KNK++SVK  L  WGKKAAEATK+AEDLAGNMWQHLK 
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKM 138

Query: 127 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 186
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 187 LSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 246
           LST KLAFCSD PLSYKVG++T+WSYYKVVIPL QLKAVN STSK  PAEKY+Q+ISVDN
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKVVIPLHQLKAVNTSTSKVNPAEKYVQIISVDN 258

Query: 247 HEFWFMGFVHYDSAVKNLLGAL 268
           HEFWFMGFVHYDSAVKNL GAL
Sbjct: 259 HEFWFMGFVHYDSAVKNLQGAL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808044|ref|NP_001242211.1| uncharacterized protein LOC100794961 [Glycine max] gi|255635924|gb|ACU18309.1| unknown [Glycine max]

 Score =  362 bits (930), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 187/244 (76%), Positives = 209/244 (85%), Gaps = 8/244 (3%)

Query: 29  SSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSS 88
           ++DYAPYPK+DP DVAPP    S        API+E AATTMP +SNPYV+P+P+  SS+
Sbjct: 47  TADYAPYPKLDPTDVAPPLNTESR-------APISEDAATTMPKDSNPYVTPAPVPASST 99

Query: 89  KNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEG 148
           K  L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEG
Sbjct: 100 KTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEG 159

Query: 149 GYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDE 207
           GYEKIFRQ+F+TVP EQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+V GD+
Sbjct: 160 GYEKIFRQTFETVPGEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGGDQ 219

Query: 208 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 267
           TQWSYYKVVIPL QL+AVN STS+   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 220 TQWSYYKVVIPLHQLRAVNASTSRTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 279

Query: 268 LGPR 271
           L P 
Sbjct: 280 LQPH 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465343|ref|XP_003602953.1| GLABRA2 expression modulator [Medicago truncatula] gi|355492001|gb|AES73204.1| GLABRA2 expression modulator [Medicago truncatula]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/245 (78%), Positives = 213/245 (86%), Gaps = 8/245 (3%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPI-EPS 86
           H+ DYAPYPK+DPNDVAPPP   +  S AT        AATTMPAESNPYVSP+P+  P+
Sbjct: 21  HTPDYAPYPKLDPNDVAPPPPPVATESRAT-------DAATTMPAESNPYVSPAPVPAPT 73

Query: 87  SSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLA 146
           S+KN L+SVK  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLA
Sbjct: 74  SAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLA 133

Query: 147 EGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD 206
           EGGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+ GD
Sbjct: 134 EGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGD 193

Query: 207 ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLG 266
           +TQWSYYKVVIPL QL+AVNPSTSKA P EK+IQ+ISVDNHEFWFMGFV+YDSAVK++  
Sbjct: 194 QTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQE 253

Query: 267 ALGPR 271
           AL  R
Sbjct: 254 ALQSR 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.915	0.965	0.644	4.1e-88
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.802	0.732	0.666	9e-77
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.849	0.852	0.418	7.4e-50
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.706	0.828	0.421	2.9e-39
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.699	0.872	0.371	1e-29
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.681	0.885	0.356	5.6e-29
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.699	0.860	0.364	8.2e-28

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 172/267 (64%), Positives = 209/267 (78%)

Query:     3 QQQADH-QIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
             Q+  DH +I +  ++ +     +   HSSDYAPYPK+DP DV PPP           P P
Sbjct:     4 QENHDHGRISSTPAAASE--PSKAAAHSSDYAPYPKLDPTDVTPPPPQ---------PIP 52

Query:    62 INESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMW 121
                +AATTMPAESNPYVSPSP    + +N ++SVK  L  WGK AA+ATK+AEDLAGN W
Sbjct:    53 TG-AAATTMPAESNPYVSPSP----APRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFW 107

Query:   122 QHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPV 181
             QHLKTGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV
Sbjct:   108 QHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPV 167

Query:   182 VGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQV 241
             +GV+YLST KLAF SD+PLSYK G++T WSYYKVV+P +QLKAVNPSTS+   ++KYIQV
Sbjct:   168 LGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQV 227

Query:   242 ISVDNHEFWFMGFVHYDSAVKNLLGAL 268
             IS+DNHEFWFMGFV Y+SAVK+L  A+
Sbjct:   228 ISIDNHEFWFMGFVTYESAVKSLQEAV 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 148/222 (66%), Positives = 178/222 (80%)

Query:    49 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGALSNWGKKA 106
             +WS    +    P ++ AA++  A SNPY++ SP E S  S K+ +E+VKG L  WGK+ 
Sbjct:    71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRV 129

Query:   107 AEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQL 166
             AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQL
Sbjct:   130 AEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQL 189

Query:   167 LKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVN 226
             L ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GD+T+WSYYKVVIPL QLKAVN
Sbjct:   190 LNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVN 249

Query:   227 PSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 268
             PS S   PAEKYIQVISVDNHEFWFMGF++YD AV +L  +L
Sbjct:   250 PSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 106/253 (41%), Positives = 152/253 (60%)

Query:    24 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN---- 75
             Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++     
Sbjct:    15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQY 72

Query:    76 -PYVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 134
              PYV  SP+E  ++ N LE V G    W +KA       E +A N+W +LKTGPS+++ A
Sbjct:    73 QPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETA 125

Query:   135 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 194
              G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AF
Sbjct:   126 WGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAF 185

Query:   195 CSDDPLSYKV--GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 252
             CSD PL +    G E+ WSYY+VV+PL+ +  VNP   K  P EKYIQ+ +VD H+FWFM
Sbjct:   186 CSDRPLYFTAPSGQES-WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFM 244

Query:   253 GFVHYDSAVKNLL 265
             GFV+Y+ A  +LL
Sbjct:   245 GFVNYEKATHHLL 257

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 83/197 (42%), Positives = 127/197 (64%)

Query:    75 NPYVS-PSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADA 133
             NPYV   SP   S  ++K + V   L+  GKK  +AT++AE L G +  HLK  PS++DA
Sbjct:    29 NPYVHITSPTSASDKRSK-DKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDA 87

Query:   134 AVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLA 193
             A+ R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++A
Sbjct:    88 AMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIA 147

Query:   194 FCSDDP--LSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWF 251
             FCSD    L    G     +YYKVV+   ++ +++ ST+  KP+E+Y+ +++ D  EFWF
Sbjct:   148 FCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWF 207

Query:   252 MGFVHYDSAVKNLLGAL 268
             MGFV Y  A   L  AL
Sbjct:   208 MGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 75/202 (37%), Positives = 115/202 (56%)

Query:    76 PYVSPSP---IEPSSSKNKLESVKGALSNW--GK-KAAEATKRAEDLAGNMWQHLKTGPS 129
             P V  SP   +   +S NKL+    +  ++  GK K+    K+ +     +    K GP 
Sbjct:    14 PAVKTSPAGYLPDPASINKLQIPTSSKFSFLTGKGKSMLRKKKNDSFTNGVRDQDKLGPK 73

Query:   130 LADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 189
             L +    +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+
Sbjct:    74 LTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISS 133

Query:   190 AKLAFCSDDPLSYKVGD---ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 246
              K+AFCS+   S KV     E    +YKV IPL ++  VN S +  KP++KY++V++VD 
Sbjct:   134 KKIAFCSER--SIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDG 191

Query:   247 HEFWFMGFVHYDSAVKNLLGAL 268
              +FWFMGF+ Y  A   L  AL
Sbjct:   192 FDFWFMGFLSYQKAFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 71/199 (35%), Positives = 114/199 (57%)

Query:    76 PYVSPSPI----EPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLA 131
             P V+ +P+    +P+S  NKL+     +    K +    K+ +          K GP L 
Sbjct:    14 PAVNTAPVGYLPDPASI-NKLQ-----IPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLT 67

Query:   132 DAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAK 191
             +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K
Sbjct:    68 ETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKK 127

Query:   192 LAFCSDDPLSYKV--GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEF 249
             +AFCS+  +      GD T+  +YKV IPL ++  VN S +  KP+++Y++V++VDN++F
Sbjct:   128 IAFCSERSIKVTSPQGDLTR-VHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDF 186

Query:   250 WFMGFVHYDSAVKNLLGAL 268
             WFMGFV Y  A   L  AL
Sbjct:   187 WFMGFVSYQKAFNCLEKAL 205

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 74/203 (36%), Positives = 112/203 (55%)

Query:    72 AESNP--YVSPSPIEPSSSKNKLESVKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPS 129
             A++ P  Y+ P P   +  +    S K   SN   K+    K+ +     +    K  P 
Sbjct:    16 AKATPVGYL-PDPASFNKFRVPASSKKSEQSN--VKSILKRKKTDGFTNGVRDQSKIRPK 72

Query:   130 LADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLST 189
             L +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+
Sbjct:    73 LTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISS 132

Query:   190 AKLAFCSDDPLSYKVGDETQWS----YYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVD 245
              K+AFCS+   S KV D  Q      +YKV IPL ++  VN S +  KP++KY++V++VD
Sbjct:   133 KKMAFCSER--SIKV-DSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVD 189

Query:   246 NHEFWFMGFVHYDSAVKNLLGAL 268
               +FWFMGF+ Y  A   L  AL
Sbjct:   190 GFDFWFMGFLSYQKAFNCLEKAL 212


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       273    0.0010  114 3  11 23  0.44    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.26u 0.09s 30.35t   Elapsed:  00:00:02
  Total cpu time:  30.27u 0.09s 30.36t   Elapsed:  00:00:02
  Start:  Sat May 11 09:01:53 2013   End:  Sat May 11 09:01:55 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE96	GEML1_ARATH	No assigned EC number	0.6929	0.8315	0.8764	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-81
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-14
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	1e-13
pfam02893	60	pfam02893, GRAM, GRAM domain	4e-12
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	8e-05
cd13351	125	cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami	0.004

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  240 bits (616), Expect = 1e-81
 Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 145 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 204
           L EGG EK+FRQ+F   P E+LLK   CYLST+AGPV G L++STAK+AFCSD PLS+  
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 205 -GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKN 263
              +   SYYKVVIPL ++KAVNPS +   P+EKYIQ+++VD  EFWFMGFV+Y  A K 
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 264 LLGAL 268
           L  AL
Sbjct: 121 LQQAL 125

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 11/68 (16%)

Query: 162 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQ 221
            EE+L+  Y+CYLS   GPV G LY+S  +L F S+ P              KVVIPL+ 
Sbjct: 4   EEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLT----------KVVIPLAD 52

Query: 222 LKAVNPST 229
           +  +  ST
Sbjct: 53  ITRIEKST 60

Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 163 EEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQL 222
            E+   TY C      GPV G LYL+  +L F S +            S  ++ +PL  +
Sbjct: 1   LEKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSKER----------DSPTELDVPLGVI 48

Query: 223 KAVNPSTSKAK-PAEKYIQVISVDNHEFWFMGFVHYDSAVKNL 264
             V      +       +++   D        F   D + +++
Sbjct: 49  SRVEKVGGSSSGENSYGLEITCKD-MRNLRFAFKQEDHSRRDI 90

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 162 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQ 221
           PEE+L+  Y+CYL     PV G LYL+  +L F SD       GD T      +VIPL+ 
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKF-----GDLT-----VLVIPLAD 52

Query: 222 LKAVNPST 229
           ++ V    
Sbjct: 53  IERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 154 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYY 213
           FR+ F     E+LL  Y  YL     PV G LY+S     F S  P           +  
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLP----------GTRT 51

Query: 214 KVVIPLSQLKAVNPST 229
           K+++PL  ++ V    
Sbjct: 52  KMILPLKDIENVEKEK 67

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 154 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYY 213
           F + F    EE+L+  Y+C       P  G LYLS   L F      S+ +G ET     
Sbjct: 5   FHKLFGMPEEEKLVNYYSCSYWKGKVPRQGWLYLSVNHLCF-----YSFLLGKET----- 54

Query: 214 KVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVH 256
           K+VI  + +  +  + S   P    I+V++ D  E +F  F++
Sbjct: 55  KLVIRWTDVTQLEKNNSLLLP--DSIKVVTRDK-EHYFSMFLN 94

TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.28
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.05
PF14470	96	bPH_3: Bacterial PH domain	95.26
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	80.72
KOG4347	671	consensus GTPase-activating protein VRP [General f	80.08

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.28  E-value=1.8e-12  Score=93.96  Aligned_cols=66  Identities=39%  Similarity=0.596  Sum_probs=45.7

Q ss_pred             eeeeccCCChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccC
Q 024061          153 IFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNP  227 (273)
Q Consensus       153 iFkQ~F~v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnp  227 (273)
                      -|++.|...++|+|...|.|+|..+.+|+.|.||||+.+|+|+|+....-.         ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~---------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT---------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce---------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998664422         799999999998864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.05  E-value=1.1e-10  Score=82.86  Aligned_cols=59  Identities=46%  Similarity=0.745  Sum_probs=50.8

Q ss_pred             CChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCC
Q 024061          160 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPS  228 (273)
Q Consensus       160 v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps  228 (273)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+|+|+|+.+-...         .+++|||+.|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~---------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT---------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee---------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 669999999999999999997664422         2999999999998753

>PF14470 bPH_3: Bacterial PH domain

Probab=95.26  E-value=0.094  Score=39.07  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=65.3

Q ss_pred             ChHHHHhhhhcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEE
Q 024061          161 VPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQ  240 (273)
Q Consensus       161 ~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIq  240 (273)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..+.    +     .....||+++|.+|+-....   --..|.
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i~   69 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG----G-----KKFESIPYDDITSVSFKKGI---LGGKIT   69 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC----C-----ceEEEEEhhheEEEEEEccc---cccEEE
Confidence            46888888888887766778899999999999999874321    1     12589999999999987333   446799


Q ss_pred             EEEecCceeeeeeeccHHHHHHHHHHhhC
Q 024061          241 VISVDNHEFWFMGFVHYDSAVKNLLGALG  269 (273)
Q Consensus       241 IVTvD~~EFWFMGFvnYdKA~k~Lq~Al~  269 (273)
                      |.| ++..+ =++.+. .+-++-+-+.|+
T Consensus        70 i~~-~~~~~-~i~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   70 IET-NGEKI-KIDNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEE-CCEEE-EEEEcC-HHHHHHHHHHHh
Confidence            988 44444 445443 333344444443

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=80.72  E-value=1.6  Score=33.61  Aligned_cols=52  Identities=19%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             HhhhhhhhHHHhHhhhhhhhhhhhhcccCCChHHHHHhhhhhhhhhhhcCCcceeeeec
Q 024061           99 LSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQS  157 (273)
Q Consensus        99 ~~~~gkk~~eatrKae~~a~~iw~Hlk~gpsisdta~GKlslGaKil~eGG~ekiFkQ~  157 (273)
                      +++|||.       .-...=++-|-|++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus         7 ~t~~Gr~-------~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    7 MTWLGRF-------ITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             ccHHHHH-------HHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            6778884       333344566889999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=80.08  E-value=1.8  Score=45.48  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=74.7

Q ss_pred             eccCCChHHHHhhhhcceeecCCC--CeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCC
Q 024061          156 QSFDTVPEEQLLKTYACYLSTSAG--PVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAK  233 (273)
Q Consensus       156 Q~F~v~~~EkLlKa~aCYLSTsaG--PVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~n  233 (273)
                      -.|...  |+|--.-.|=|-|..-  =..|-||+||..++|.||-+=.           -.+++||.-|+.|.-.. ..+
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~-----------c~~~~Pl~~vr~ve~~~-~ss   79 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL-----------CSFITPLLAVRSVERLD-DSS   79 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc-----------ceEeeehhhhhhhhccC-ccc
Confidence            455555  9999999999999866  5889999999999999997643           26899999999998764 222


Q ss_pred             CcCceEEEEEecCceeeeeeeccHHHHHHHHH
Q 024061          234 PAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL  265 (273)
Q Consensus       234 PseKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq  265 (273)
                      --..=|-+.|-.+..|-|-|+..=++.+.-+.
T Consensus        80 ~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   80 LFTQLISLFTSNMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             cchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence            22333667888999999999887777765544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 42/318 (13%), Positives = 90/318 (28%), Gaps = 91/318 (28%)

Query: 1   MNQQQADHQIETKASSETHHMQQ-QQEPHSSDYA--------PYPK----IDPNDVAPPP 47
              Q+  +QI+   +S + H    +   HS            PY      +   +V    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NV---- 253

Query: 48  QNWSN-------------VSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKNKLES 94
              +              ++T        +     + A +  ++S      + + ++++S
Sbjct: 254 --QNAKAWNAFNLSCKILLTTR------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 95  VKGALSNW-GKKAA----EATK---RAEDLAG-------NMWQHLKTGPSLADAAVGRIA 139
           +   L  +   +      E      R   +           W + K    +    +  I 
Sbjct: 306 L---LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTII 359

Query: 140 QRT-KVLAEGGYEK------IFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKL 192
           + +  VL    Y K      +F  S   +P   LL      +  S   VV V  L    L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH-IPT-ILLSLIWFDVIKSDVMVV-VNKLHKYSL 416

Query: 193 AFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKY----------IQVI 242
                   +  +       Y ++ + L    A++         + Y          +   
Sbjct: 417 VEKQPKESTISIPS----IYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPP 467

Query: 243 SVDNHEFWFMGFVHYDSA 260
            +D + +  +G  H  + 
Sbjct: 468 YLDQYFYSHIGH-HLKNI 484

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	88.03
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	86.33

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=88.03  E-value=0.88  Score=44.84  Aligned_cols=88  Identities=16%  Similarity=0.181  Sum_probs=55.3

Q ss_pred             cCCChHHHHhhhhc--ceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCc
Q 024061          158 FDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPA  235 (273)
Q Consensus       158 F~v~~~EkLlKa~a--CYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPs  235 (273)
                      |...|||.++....  =|+..-.|++.|+|||++-|+.|.+...      + .   .+.+-|||..|..|..........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~-~---~~~~~iPL~~I~~vek~~~~s~~~   76 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P---PFVLDASLGVINRVEKIGGASSRG   76 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S---CEEEEEEGGGEEEEEEECCTTCCS
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------C-c---cEEEEeeccceEEEEEcCCCCcCC
Confidence            66789998885521  1555557899999999999999998521      1 1   235689998877776432111111


Q ss_pred             --CceEEEEEecCceeeeeeecc
Q 024061          236 --EKYIQVISVDNHEFWFMGFVH  256 (273)
Q Consensus       236 --eKYIqIVTvD~~EFWFMGFvn  256 (273)
                        --.|+|..-|- .++=.+|-.
T Consensus        77 ~~~~~l~I~CKDf-r~~~f~f~~   98 (528)
T 1zsq_A           77 ENSYGLETVCKDI-RNLRFAHKP   98 (528)
T ss_dssp             TTCSEEEEEETTT-EEEEEECCG
T ss_pred             CCCceEEEEccCC-eEEEEEecC
Confidence              12477766654 444445643

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=86.33  E-value=1.2  Score=45.30  Aligned_cols=89  Identities=17%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             ccCCChHHHHhhhhc--ceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCC
Q 024061          157 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKP  234 (273)
Q Consensus       157 ~F~v~~~EkLlKa~a--CYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nP  234 (273)
                      -|...|||.+.....  =|+..-.|++.|+|||++.||.|++...      + .   .+.+-|||..|..|.........
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~-~---~~~~~IPL~~I~~Iekv~g~s~~  147 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------D-P---PFVLDASLGVINRVEKIGGASSR  147 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------S-S---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------C-c---ceEEEecccceEEEEecCCCccc
Confidence            377899999984421  1444446899999999999999998521      1 1   24567999888777653211111


Q ss_pred             cC--ceEEEEEecCceeeeeeecc
Q 024061          235 AE--KYIQVISVDNHEFWFMGFVH  256 (273)
Q Consensus       235 se--KYIqIVTvD~~EFWFMGFvn  256 (273)
                      .+  -.|+|..-| |.++=.+|-.
T Consensus       148 g~~~~~l~I~CKD-fR~~~f~f~~  170 (657)
T 1lw3_A          148 GENSYGLETVCKD-IRNLRFAHKP  170 (657)
T ss_dssp             STTCSEEEEEETT-TEEEEEECCG
T ss_pred             CCCCceEEEEecC-CcEEEEEeCC
Confidence            11  246666665 4444445643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.93
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	88.95

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0064  Score=46.94  Aligned_cols=81  Identities=17%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             ChHHHHhhh--hcceeecCCCCeeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCC--CCcC
Q 024061          161 VPEEQLLKT--YACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKA--KPAE  236 (273)
Q Consensus       161 ~~~EkLlKa--~aCYLSTsaGPVaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~--nPse  236 (273)
                      .|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..     +.     .+.+-|||..|..|.......  +-.-
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-----~~-----~~~~~ipl~~I~~v~k~~~~~~~~~~~   75 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-----DP-----PFVLDASLGVINRVEKIGGASSRGENS   75 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-----SS-----CEEEEEEGGGEEEEEEECCTTCCSTTC
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-----Cc-----cEEEEeccceeeeeeecccccccCCcc
Confidence            567765422  114666678999999999999999976421     11     124569999888886432222  1222


Q ss_pred             ceEEEEEecCceeee
Q 024061          237 KYIQVISVDNHEFWF  251 (273)
Q Consensus       237 KYIqIVTvD~~EFWF  251 (273)
                      -.|+|+.-|.--+=|
T Consensus        76 ~~L~I~CKDfr~~~f   90 (125)
T d1zsqa1          76 YGLETVCKDIRNLRF   90 (125)
T ss_dssp             SEEEEEETTTEEEEE
T ss_pred             ccEEEEeccCeEEEE
Confidence            369999988655544

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.9  Score=34.54  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             eeeeEEeecceeeeecCCCcceecCCceeeeEEEEeeeccccccccCCCCCCCCcCceEEEEEecCceeeeeeeccHHHH
Q 024061          181 VVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSA  260 (273)
Q Consensus       181 VaG~LfIST~kvAFCSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFMGFvnYdKA  260 (273)
                      +.|+|||++.+|+|..+.+=.           -+|.|++..|+.-..|  .+..+.-=++||.-|+-.|=|- |.|+.-|
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~-----------~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~~   85 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR-----------FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNESTA   85 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS-----------CSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEEE-ECCTTTH
T ss_pred             CCcEEEEEcCeEEEEcCCCCC-----------ceEEEEhhhhhceecC--CCCcccceeEEEEeCCCeEEEE-ECChHHH
Confidence            579999999999997653211           2578999999876553  3555566699999999888774 8888544