Citrus Sinensis ID: 024082


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
cEEEccEEcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHccccccccccEEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccEEEEEEEEEcccEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEccccc
cEEEccEccccccccccccccccHHHHHHHHcccHHHHcccHHHHHHHHHccccccccccccEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEccccEccccccccccHHHHHHHHHHHHcccccEEEEEEEEEcccccEccccccccEEEEEEEEEcccEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEccccc
mifvgglpfstnnsswsssssqGSDILVALLEHpvlvsashsfksmeetkvsvssetpspskyvYVFQREyatvdpalvdyvgtdeatTCVGLVIRNRrnrmtsiahmdnpeivDIGLCQMLSLVVDHDLDAELDVYLIggfddaspnhangttisecysdmdgyslplCRKLVDTLQRRQEKFHVQTLHVlghntkrdsqgnaypiFHGFLVetctgslspasfdgtsrcpdeMVRRIRvtssyedtswngklletydtqtdrfviapcrw
MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETkvsvssetpspsKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVqtlhvlghntkrdsqGNAYPIFHGFLVETCTGSLSPAsfdgtsrcpdeMVRRIRVtssyedtswngklletydtqtdrfviapcrw
MIFVGGLPFstnnsswsssssqgsDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
*************************ILVALLEHPVLV************************KYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGT*RCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPC**
MIFVG***********************ALLEHPVLVSA******************PSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
MIFVGGLPFS*************SDILVALLEHPVLVSASHS*****************PSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
*I***GLPF**************SDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
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MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query272 2.2.26 [Sep-21-2011]
Q64311310 Protein N-terminal aspara yes no 0.680 0.596 0.279 3e-14
Q28955310 Protein N-terminal aspara yes no 0.680 0.596 0.293 4e-14
Q96AB6310 Protein N-terminal aspara yes no 0.683 0.6 0.281 7e-14
>sp|Q64311|NTAN1_MOUSE Protein N-terminal asparagine amidohydrolase OS=Mus musculus GN=Ntan1 PE=2 SV=3 Back     alignment and function desciption
 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 33/218 (15%)

Query: 60  PSKYVYVFQREYATVDP--ALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEI---V 114
           P   +YV QRE A   P    +  +G+D+ATTC  +V+R+  N  T + H D  +    V
Sbjct: 43  PQGLLYVQQRELAVTSPKDGSISILGSDDATTCHIVVLRHTGNGATCLTHCDGSDTKAEV 102

Query: 115 DIGLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLV 174
            + +  + S   +H     L+V+L+GGF                 SD    S  L  +L+
Sbjct: 103 PLIMSSIKSF-SEHAECGRLEVHLVGGF-----------------SDDRQLSQKLTHQLL 144

Query: 175 DTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDE 234
               ++ +  H+ TL V   N + +++ N +PI +G  V   T  +  ASF    R P+E
Sbjct: 145 SEFDKQDDDIHLVTLCVTELNDREENE-NHFPIIYGIAVNIKTAEIYRASFQ--DRGPEE 201

Query: 235 MVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW 272
            +R  R  +        G ++  YD +T++  I PC W
Sbjct: 202 QLRAARALA-------GGPMISIYDAKTEQLRIGPCSW 232




Side-chain deamidation of N-terminal asparagine residues to aspartate. Required for the ubiquitin-dependent turnover of intracellular proteins that initiate with Met-Asn. These proteins are acetylated on the retained initiator methionine and can subsequently be modified by the removal of N-acetyl methionine by acylaminoacid hydrolase (AAH). Conversion of the resulting N-terminal asparagine to aspartate by PNAD renders the protein susceptible to arginylation, polyubiquitination and degradation as specified by the N-end rule. This enzyme does not act on substrates with internal or C-terminal asparagines and does not act on glutamine residues in any position.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q28955|NTAN1_PIG Protein N-terminal asparagine amidohydrolase OS=Sus scrofa GN=NTAN1 PE=1 SV=3 Back     alignment and function description
>sp|Q96AB6|NTAN1_HUMAN Protein N-terminal asparagine amidohydrolase OS=Homo sapiens GN=NTAN1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
224104535359 predicted protein [Populus trichocarpa] 0.974 0.738 0.661 1e-104
356525612343 PREDICTED: protein N-terminal asparagine 0.981 0.778 0.663 1e-101
359487457363 PREDICTED: protein N-terminal asparagine 0.988 0.741 0.663 8e-97
449463783347 PREDICTED: protein N-terminal asparagine 0.985 0.772 0.619 2e-94
297741220339 unnamed protein product [Vitis vinifera] 0.900 0.722 0.682 2e-93
357451021 384 Protein N-terminal asparagine amidohydro 0.908 0.643 0.642 4e-90
147768910 375 hypothetical protein VITISV_024457 [Viti 0.944 0.685 0.626 1e-88
297824457348 N-terminal asparagine amidohydrolase fam 0.992 0.775 0.605 3e-88
18406532347 protein N-terminal asparagine amidohydro 0.988 0.775 0.612 2e-87
21554202347 unknown [Arabidopsis thaliana] 0.988 0.775 0.612 2e-87
>gi|224104535|ref|XP_002313470.1| predicted protein [Populus trichocarpa] gi|222849878|gb|EEE87425.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/272 (66%), Positives = 221/272 (81%), Gaps = 7/272 (2%)

Query: 1   MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVSASHSFKSMEETKVSVSSETPSP 60
           MIFV GL F T+       SSQ    LV LLEHP LVSAS+SF++M+E K+S S E    
Sbjct: 1   MIFVDGLTFPTD-------SSQERGALVTLLEHPKLVSASNSFEAMQEVKLSASKEYALQ 53

Query: 61  SKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLCQ 120
            ++VYVFQRE+ATVDPAL+D++GTDEATTCVGLVIRN+RN MTS+AHMD+ ++VDIGL Q
Sbjct: 54  GRWVYVFQREFATVDPALIDFIGTDEATTCVGLVIRNQRNGMTSVAHMDSTKVVDIGLAQ 113

Query: 121 MLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRR 180
           MLS+VVD + D +LDV+LIGGF+D  P  ANG+T SE  +  DGYS PLC K+++ L++ 
Sbjct: 114 MLSIVVDKNFDDDLDVHLIGGFEDVLPKQANGSTRSETQAKGDGYSFPLCTKIIENLRKG 173

Query: 181 QEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIR 240
           +EKFH+QTL VLGHNTKRDSQGNAYP+F+GFLV+T TGS+ PASFD T+RCPDE+VRRIR
Sbjct: 174 KEKFHIQTLFVLGHNTKRDSQGNAYPVFNGFLVKTSTGSVIPASFDRTTRCPDEIVRRIR 233

Query: 241 VTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW 272
           +++S ED +WNGKLLETYDTQ DRFVIAPC W
Sbjct: 234 ISASNEDPTWNGKLLETYDTQNDRFVIAPCSW 265




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525612|ref|XP_003531418.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Glycine max] Back     alignment and taxonomy information
>gi|359487457|ref|XP_002268254.2| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463783|ref|XP_004149611.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Cucumis sativus] gi|449526561|ref|XP_004170282.1| PREDICTED: protein N-terminal asparagine amidohydrolase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297741220|emb|CBI32171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357451021|ref|XP_003595787.1| Protein N-terminal asparagine amidohydrolase [Medicago truncatula] gi|355484835|gb|AES66038.1| Protein N-terminal asparagine amidohydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|147768910|emb|CAN75884.1| hypothetical protein VITISV_024457 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824457|ref|XP_002880111.1| N-terminal asparagine amidohydrolase family protein [Arabidopsis lyrata subsp. lyrata] gi|297325950|gb|EFH56370.1| N-terminal asparagine amidohydrolase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18406532|ref|NP_566017.1| protein N-terminal asparagine amidohydrolase family protein [Arabidopsis thaliana] gi|20197192|gb|AAC16088.2| expressed protein [Arabidopsis thaliana] gi|26450109|dbj|BAC42174.1| unknown protein [Arabidopsis thaliana] gi|28827584|gb|AAO50636.1| unknown protein [Arabidopsis thaliana] gi|330255324|gb|AEC10418.1| protein N-terminal asparagine amidohydrolase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554202|gb|AAM63281.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query272
TAIR|locus:2050549347 AT2G44420 "AT2G44420" [Arabido 0.988 0.775 0.590 1.6e-86
ZFIN|ZDB-GENE-040426-1896306 zgc:77869 "zgc:77869" [Danio r 0.636 0.565 0.307 2.2e-11
UNIPROTKB|F1PPS3313 NTAN1 "Uncharacterized protein 0.643 0.559 0.274 3.9e-10
UNIPROTKB|Q28955310 NTAN1 "Protein N-terminal aspa 0.566 0.496 0.289 2.9e-09
UNIPROTKB|Q96AB6310 NTAN1 "Protein N-terminal aspa 0.566 0.496 0.278 3.8e-09
UNIPROTKB|E1B891310 NTAN1 "Uncharacterized protein 0.566 0.496 0.278 8.9e-09
RGD|1305160309 Ntan1 "N-terminal asparagine a 0.566 0.498 0.278 3.6e-08
MGI|MGI:108471310 Ntan1 "N-terminal Asn amidase" 0.566 0.496 0.272 4.9e-08
FB|FBgn0034371310 SP2637 "SP2637" [Drosophila me 0.621 0.545 0.29 1.9e-07
UNIPROTKB|H3BPN7146 NTAN1 "Protein N-terminal aspa 0.382 0.712 0.271 6.7e-07
TAIR|locus:2050549 AT2G44420 "AT2G44420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 163/276 (59%), Positives = 213/276 (77%)

Query:     1 MIFVGGLPFXXXXXXXXXXXXXX-XDILVALLEHPVLVSASHSFKSMEETKVSVS---SE 56
             MI+VGG+ F                 +LV ++ HPV+  AS SFK++EE  VS     SE
Sbjct:     1 MIYVGGVQFLDESSSFSLSSSSQGSSLLVDVMSHPVITLASDSFKNLEEKNVSFDESDSE 60

Query:    57 TPSPSKYVYVFQREYATVDPALVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDI 116
             + +  +YVY+FQRE+A V+PALVD+VGTDEATTCVGLVIRNR++ MTS+AHMD+PEIVD+
Sbjct:    61 SSTKDRYVYIFQREFAVVNPALVDFVGTDEATTCVGLVIRNRKSGMTSVAHMDSPEIVDL 120

Query:   117 GLCQMLSLVVDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDT 176
             G+ QML LV+  D+DAELDV+++GG++D    +A+G  + + Y+  +GYS PLC KLV+T
Sbjct:   121 GISQMLLLVLQDDVDAELDVHMVGGYEDVDIKNADG--VGD-YAKPEGYSFPLCCKLVET 177

Query:   177 LQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMV 236
             LQ+R+E FH+QTL +LGHNTK DSQ N  PIF+G LV T TG++ PASF+ TSRCPDE+V
Sbjct:   178 LQKRRENFHIQTLFILGHNTKLDSQANTCPIFNGCLVNTSTGAILPASFNRTSRCPDEIV 237

Query:   237 RRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW 272
             RRIRV+SS+ED+SW GKLL+TYDT+TDRF+IAPCRW
Sbjct:   238 RRIRVSSSFEDSSWKGKLLDTYDTKTDRFIIAPCRW 273




GO:0008150 "biological_process" evidence=ND
GO:0008418 "protein-N-terminal asparagine amidohydrolase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
ZFIN|ZDB-GENE-040426-1896 zgc:77869 "zgc:77869" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PPS3 NTAN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q28955 NTAN1 "Protein N-terminal asparagine amidohydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96AB6 NTAN1 "Protein N-terminal asparagine amidohydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B891 NTAN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305160 Ntan1 "N-terminal asparagine amidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:108471 Ntan1 "N-terminal Asn amidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0034371 SP2637 "SP2637" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H3BPN7 NTAN1 "Protein N-terminal asparagine amidohydrolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 272
PF14736274 N_Asn_amidohyd: Protein N-terminal asparagine amid 100.0
PRK13498167 chemoreceptor glutamine deamidase CheD; Provisiona 96.64
PRK13490162 chemoreceptor glutamine deamidase CheD; Provisiona 96.63
PRK13493213 chemoreceptor glutamine deamidase CheD; Provisiona 96.46
PRK13497184 chemoreceptor glutamine deamidase CheD; Provisiona 96.37
PRK13495159 chemoreceptor glutamine deamidase CheD; Provisiona 96.31
PRK13494163 chemoreceptor glutamine deamidase CheD; Provisiona 96.23
PRK13489233 chemoreceptor glutamine deamidase CheD; Provisiona 96.06
PRK13491199 chemoreceptor glutamine deamidase CheD; Provisiona 95.83
PRK13488157 chemoreceptor glutamine deamidase CheD; Provisiona 95.78
COG1871164 CheD Chemotaxis protein; stimulates methylation of 95.74
PRK13487201 chemoreceptor glutamine deamidase CheD; Provisiona 95.15
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase Back     alignment and domain information
Probab=100.00  E-value=9.7e-82  Score=579.75  Aligned_cols=197  Identities=40%  Similarity=0.680  Sum_probs=190.7

Q ss_pred             hhccCcceEeecCCCCCCCCeEEEEeceeeEEecCC--ceeeeecCCCceeeEEEEEeCCCCceEEEeccCCchhhHHHH
Q 024082           42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC  119 (272)
Q Consensus        42 ~l~~~p~~~v~~~~e~s~~~~lLYV~QRE~A~t~P~--~V~ilGSDdATTChivVlRhtgsGat~laH~Dgs~~v~~~v~  119 (272)
                      +|+++|.+.++       |+|+|||+|||||||+|+  +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus         1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~   72 (274)
T PF14736_consen    1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA   72 (274)
T ss_pred             CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence            58999999999       999999999999999999  699999999999999999999999999999999997 99999


Q ss_pred             HHHHhh---cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCc
Q 024082          120 QMLSLV---VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT  196 (272)
Q Consensus       120 ~ml~~l---~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt  196 (272)
                      +|++++   +.++.++||||||||||+|+                 +|||++||.+||++|||++++|||+||||+++||
T Consensus        73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt  135 (274)
T PF14736_consen   73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT  135 (274)
T ss_pred             HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence            999996   44568999999999999999                 9999999999999999999999999999999999


Q ss_pred             eecCCCCCcceEEEEEEEecCCeeeccccCCCCCCchHHHhhhhhhccccCcCCCCeeEeeeeCCCCeEEEccCcC
Q 024082          197 KRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW  272 (272)
Q Consensus       197 ~~~~~g~~~PiiyGi~VnvkTG~IfpAsF~~~~rGPde~lR~aR~~~s~~d~~~g~~l~~iYD~~~~~l~I~Pf~w  272 (272)
                      +++ +|++|||||||+||+|||+||||+|  ++|||+|+||+||+++      |+++|+||||+++++|+|+||+|
T Consensus       136 ~~~-~g~~~Pii~Gi~VnvkTG~IfpAsF--~~rGP~~~lR~aR~~~------~~~~l~~iYD~~~~~l~I~Pf~~  202 (274)
T PF14736_consen  136 RVE-DGIHRPIIYGIAVNVKTGEIFPASF--PDRGPDEILRSARVFT------GGGRLLNIYDTETDQLRIGPFHW  202 (274)
T ss_pred             ccC-CCccCcEEEEEEEEecCCeEecccC--cccCCcHHHHHHHHhc------CCCceEEEEECCCCeEEECCCcC
Confidence            988 8999999999999999999999999  9999999999999995      79999999999999999999999



>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
2f9z_C159 Protein (chemotaxis methylation protein); bacteria 96.44
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3 Back     alignment and structure
Probab=96.44  E-value=0.012  Score=50.04  Aligned_cols=132  Identities=15%  Similarity=0.181  Sum_probs=90.3

Q ss_pred             eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEecc---C-------CchhhHHHHHHHHhh-cC
Q 024082           62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMD---N-------PEIVDIGLCQMLSLV-VD  127 (272)
Q Consensus        62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~D---g-------s~~v~~~v~~ml~~l-~~  127 (272)
                      ..++|.+.||.++. |. -..+ |||     |+.|+|+++..+.-.|+|+=   .       ....+.++..|++.+ ..
T Consensus         3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~   77 (159)
T 2f9z_C            3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM   77 (159)
T ss_dssp             CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred             cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence            45799999999876 55 3566 887     99999999999999999983   1       235678999999886 55


Q ss_pred             CCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcce
Q 024082          128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI  207 (272)
Q Consensus       128 ~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~Pi  207 (272)
                      +....+|++.|.||=.=-...             .....++......+.|++..  |.+.--=+++..-          .
T Consensus        78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~g--I~i~aeD~GG~~g----------R  132 (159)
T 2f9z_C           78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFG--IKLLAEDTGGNRA----------R  132 (159)
T ss_dssp             TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTT--CCEEEEEECCSSC----------E
T ss_pred             CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCC--CcEEEEeCCCCCC----------c
Confidence            666789999999995532100             03355566666666666644  4443333333222          1


Q ss_pred             EEEEEEEecCCeeecccc
Q 024082          208 FHGFLVETCTGSLSPASF  225 (272)
Q Consensus       208 iyGi~VnvkTG~IfpAsF  225 (272)
                        =+-+++.||++.=-+.
T Consensus       133 --~i~f~~~tG~v~vk~~  148 (159)
T 2f9z_C          133 --SVEYNIETGKLLVRKV  148 (159)
T ss_dssp             --EEEEETTTTEEEEECC
T ss_pred             --EEEEECCCCEEEEEEc
Confidence              2556888888765444




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query272
d2f9zc1157 Chemoreceptor glutamine deamidase CheD {Thermotoga 96.33
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: CNF1/YfiH-like putative cysteine hydrolases
superfamily: CNF1/YfiH-like putative cysteine hydrolases
family: CheD-like
domain: Chemoreceptor glutamine deamidase CheD
species: Thermotoga maritima [TaxId: 2336]
Probab=96.33  E-value=0.04  Score=44.75  Aligned_cols=128  Identities=16%  Similarity=0.228  Sum_probs=91.4

Q ss_pred             EeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccCC----------chhhHHHHHHHHhh-cCCCCC
Q 024082           66 VFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLV-VDHDLD  131 (272)
Q Consensus        66 V~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~Dgs----------~~v~~~v~~ml~~l-~~~~~~  131 (272)
                      |.+.||+++. |. -+.+ |||     |+.|+|.++..+.-.|+|+==|          ...+.++..|++.+ ..+...
T Consensus         5 vgiGe~~v~~~~~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~ai~~Li~~m~~~Ga~~   79 (157)
T d2f9zc1           5 IGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKMGAKV   79 (157)
T ss_dssp             CCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTTTCCG
T ss_pred             EEeccEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCchhhHHHHHHHHHHHHHHHcCCCh
Confidence            6789999985 66 3565 897     9999999999999999998222          23689999999996 456668


Q ss_pred             ceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcceEEEE
Q 024082          132 AELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIFHGF  211 (272)
Q Consensus       132 grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~PiiyGi  211 (272)
                      .+|++.|.||-.=-.     +.        .....++.....++.|++..  |.+.---+++..-+            =+
T Consensus        80 ~~l~aKifGGA~m~~-----~~--------~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~gR------------~i  132 (157)
T d2f9zc1          80 ERLEAKIAGGASMFE-----SK--------GMNIGARNVEAVKKHLKDFG--IKLLAEDTGGNRAR------------SV  132 (157)
T ss_dssp             GGCEEEEEECCCCSC-----CC--------SSCHHHHHHHHHHHHHHHTT--CCEEEEEECCSSCE------------EE
T ss_pred             HHeEEEEecCeeccC-----CC--------CCCcHHHHHHHHHHHHHHCC--CcEEEEECCCCCCc------------EE
Confidence            899999999965321     10        13456677777777777654  55555566655442            25


Q ss_pred             EEEecCCeeecccc
Q 024082          212 LVETCTGSLSPASF  225 (272)
Q Consensus       212 ~VnvkTG~IfpAsF  225 (272)
                      .+++.||+++=-+.
T Consensus       133 ~f~~~tG~v~vk~~  146 (157)
T d2f9zc1         133 EYNIETGKLLVRKV  146 (157)
T ss_dssp             EEETTTTEEEEECC
T ss_pred             EEECCCCEEEEEEC
Confidence            68888998864443