Citrus Sinensis ID: 024089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHcccccccccHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHccccc
Coil and Loop (DISEMBL)
milngyttlsgcvptnsnkcnvqqNRSVFAsilgppthsaglstrsswgthhwvgswssggfpvlhlsaastpllsgeqgslahtipslpmsrrshlspraskdvpysfrfppmtkkprwwwrslacipylmplhetwMYAETayhlhpfledfeyltypfleaigkLPVWFLMAYFFVAYLGVvrrkewphFFRFHVVMGMLLEIALQVVGtastwlpygiywgklGMHFWTAVAFGFLFTVLECIRCALRgmyadlpffcdaaciqipye
Flexible Loop (DISEMBL)
milngyttlsgcvptnsnKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHtipslpmsrrshlspraskdvpysfrfppmtkkprwwwRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Low Complexity Region (SEG)
MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Disordered region (IsUnstruct)
****GYTTLSGCVPTNSNKCNVQQNRSVFASILGP*****GLSTRSSWGTHHWVGSWSSGGFPVLHLSAA*************************************SFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIP**
Disordered Region (DISOPRED)
**********************************************************************************************************************RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIP**
Disordered Region (DISEMBL)
MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPM***********KDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Disordered Region (DISPRO)
*ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPM***SHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q8GZ79	274	Protein TIC 20-I, chlorop	yes	no	0.996	0.989	0.664	1e-97
Q9ZST8	253	Protein TIC 20, chloropla	N/A	no	0.922	0.992	0.601	8e-81
Q9ZQZ9	284	Protein TIC 20-IV, chloro	no	no	0.672	0.644	0.407	7e-39
O19916	205	Tic20 family protein Ycf6	N/A	no	0.525	0.697	0.267	5e-05
P73387	160	Tic20 family protein OS=S	N/A	no	0.525	0.893	0.245	0.0007

>sp|Q8GZ79|TI201_ARATH Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1

 Score =  356 bits (913), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 215/274 (78%), Gaps = 3/274 (1%)

Query: 2   ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGS---WS 58
           ++ GY+T S  V  +S        R+           S+    ++SWG+     +     
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 59  SGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKP 118
           S G P+ +LSA+S+ LL+GEQGSL+ T+P LP+ R++ L+PRASKDVP SFRFPPMTKKP
Sbjct: 61  SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query: 119 RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFF 178
           +WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG 238
           VAYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P G+YWGK GMHFWTAVAF 
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query: 239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           +LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope. Seems to be specific for photosynthesis-related pre-proteins. Partially redundant with TIC20-IV, but not with TIC20-II or TIC20-V.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST8|TIC20_PEA Protein TIC 20, chloroplastic OS=Pisum sativum GN=TIC20 PE=1 SV=1

 Score =  300 bits (768), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 154/256 (60%), Positives = 178/256 (69%), Gaps = 5/256 (1%)

Query: 17  SNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLS 76
            N   V Q  SV       P   A  S RS WG  H + +    G     +SA S+ LLS
Sbjct: 3   QNGGTVSQG-SVLCYACQIPAKVAVSSIRSFWG--HSLEN-KPRGMTFTDMSATSSLLLS 58

Query: 77  GEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHE 136
           G Q  L+ TIP LP   +S  +PRA+KD    FRFPPMTKKPRWWWR+L+CIPYL+P H+
Sbjct: 59  GGQNFLSRTIPVLPTLHKSSTTPRATKDSS-GFRFPPMTKKPRWWWRTLSCIPYLLPFHQ 117

Query: 137 TWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRF 196
            WMYA TAYHLHPF+  F+ +TYPFL AIG LP W L+AYF +AYL +VRRKEWPHFFRF
Sbjct: 118 AWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRF 177

Query: 197 HVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYA 256
           HV +GML+EIALQV G  S W+P   YWGKLGMHFWT   F FLFT +ECIRCAL GMYA
Sbjct: 178 HVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYA 237

Query: 257 DLPFFCDAACIQIPYE 272
           D+PF CDAA IQIP+E
Sbjct: 238 DVPFVCDAAYIQIPHE 253

Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope. Seems to be specific for photosynthesis-related pre-proteins.

Pisum sativum (taxid: 3888)

>sp|Q9ZQZ9|TI204_ARATH Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana GN=TIC20-IV PE=2 SV=1

 Score =  160 bits (406), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 117/194 (60%), Gaps = 11/194 (5%)

Query: 82  LAHTIPSLPMSRRSHLSP----RASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHET 137
            A+ +P L    R H  P    R +KD  +  + P + ++P WWWR+LAC+PYL+ L   
Sbjct: 82  FANGLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ-- 139

Query: 138 WMYAETAYHLHPFLEDFEY---LTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFF 194
              ++  +++ PFLE  +    + Y    AI + P WF M Y ++ Y+ VV+ KE PH+ 
Sbjct: 140 --ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYL 197

Query: 195 RFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGM 254
           RFH++MGMLLE ALQV+   S + P   + G+ GM++W A+ F ++  +LECIRCAL G+
Sbjct: 198 RFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGV 257

Query: 255 YADLPFFCDAACIQ 268
           YA +PF  DAA I 
Sbjct: 258 YAQIPFMTDAASIH 271

Involved in protein precursor import into chloroplasts. Partially redundant with TIC20-I, but not with TIC20-II or TIC20-V.

Arabidopsis thaliana (taxid: 3702)

>sp|O19916|YCF60_CYACA Tic20 family protein Ycf60 OS=Cyanidium caldarium GN=ycf60 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 18/161 (11%)

Query: 118 PRWWWRSLACIPYLMPLHE-TWMYAETAYHLHP-----FLEDFEYLTYPFLEA--IGKLP 169
           P    R+++C+ Y +PL E    +       H      +     Y+  P+LE+  IG   
Sbjct: 48  PSIMARAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYLESPLIG--- 104

Query: 170 VWFLMAYFFVAYLGVVR-RKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLG 228
                  F   YL  VR   +   F +FH+V  +LL +   V+GT  T LP  I +  +G
Sbjct: 105 ----FCIFITLYLIFVRGIIQISKFIKFHIVQALLLYLLDSVIGTVLTSLPLEIGYSFIG 160

Query: 229 MHFW-TAVAFGFLFTVLECIRCALRGMYADLPFFCDAACIQ 268
                T +   F+ ++      AL+G Y+++P   +AA +Q
Sbjct: 161 DRLADTLLLITFMISIYAGTD-ALKGQYSNIPLISEAAKMQ 200

Cyanidium caldarium (taxid: 2771)

>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1737 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 123 RSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVAYL 182
           R  + + Y++PL + +M+        P L+       P L+   + P    +  F V ++
Sbjct: 12  RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFII-FIVLFM 70

Query: 183 GVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKL------GMHFWTAVA 236
            VVR     HF RF+ +  +L+ I L + G    ++   ++   L         F  A+A
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGLVTETLYNFAFLGALA 130

Query: 237 FGFLFTVLECIRCALRGMYADLPFFCDAACIQIPY 271
            GF F +++ +     G YA++P   DAA  Q+ +
Sbjct: 131 CGF-FGIVQSV----LGRYAEIPTISDAAYSQVRF 160

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
225458181	272	PREDICTED: protein TIC 20-I, chloroplast	1.0	1.0	0.720	1e-111
224062091	272	predicted protein [Populus trichocarpa]	1.0	1.0	0.716	1e-108
224085720	272	predicted protein [Populus trichocarpa]	1.0	1.0	0.713	1e-108
255538742	276	conserved hypothetical protein [Ricinus	1.0	0.985	0.702	1e-105
449445477	268	PREDICTED: protein TIC 20-I, chloroplast	0.985	1.0	0.639	5e-97
145335109	274	translocon at the inner envelope membran	0.996	0.989	0.664	7e-96
297843294	273	hypothetical protein ARALYDRAFT_887669 [	0.996	0.992	0.666	8e-96
6984128	267	Tic20-like protein [Euphorbia esula]	0.974	0.992	0.645	2e-95
255647620	273	unknown [Glycine max]	1.0	0.996	0.655	4e-95
356526159	273	PREDICTED: uncharacterized protein LOC10	1.0	0.996	0.655	5e-95

>gi|225458181|ref|XP_002281211.1| PREDICTED: protein TIC 20-I, chloroplastic [Vitis vinifera] gi|302142547|emb|CBI19750.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/272 (72%), Positives = 220/272 (80%)

Query: 1   MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSG 60
           MILNG    SGC   +S  C    +  VFA     P  +A LS RSSW     + SWS G
Sbjct: 1   MILNGSVMTSGCALMDSRACKPVTSHQVFACFPHLPARTASLSIRSSWRPCQELKSWSFG 60

Query: 61  GFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRW 120
           G P+ HLSAASTPLLSG+QG L+HT+P LP   RS    RASKDVPYSFR+PPMTKKP+W
Sbjct: 61  GMPLSHLSAASTPLLSGDQGGLSHTLPMLPRRPRSPTPLRASKDVPYSFRYPPMTKKPQW 120

Query: 121 WWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVA 180
           WWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE++TYPFLE IG+LP W LMAYFF+A
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFVTYPFLEFIGRLPSWSLMAYFFIA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFL 240
           YLGVVR+KEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGK+GMHFWTAVAFG+L
Sbjct: 181 YLGVVRKKEWPHFFRFHVVMGMLLEIALQVIGTISRWMPLAVYWGKVGMHFWTAVAFGYL 240

Query: 241 FTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           FTVLECIRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 FTVLECIRCALAGMYADIPFVCDAAYIQIPYD 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062091|ref|XP_002300750.1| predicted protein [Populus trichocarpa] gi|118482844|gb|ABK93337.1| unknown [Populus trichocarpa] gi|222842476|gb|EEE80023.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/272 (71%), Positives = 216/272 (79%)

Query: 1   MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSG 60
           MILNG    SG   +++  C       V   +      +A LS+R+S   H    SWSS 
Sbjct: 1   MILNGCAMPSGSAFSSTRTCKTMPGIMVSDHVPYTTARAALLSSRASLERHLESKSWSSR 60

Query: 61  GFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRW 120
           GF  LHLSAASTPLLSG+    +H IP+ P  RRS+  PRASKDVPYSFRFPPMTKKPRW
Sbjct: 61  GFLSLHLSAASTPLLSGDYCGFSHYIPTFPRQRRSYSCPRASKDVPYSFRFPPMTKKPRW 120

Query: 121 WWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVA 180
           WWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFFVA
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFL 240
           YLGVVRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGKLGMHFWTAVAF +L
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           FTVLECIRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085720|ref|XP_002307678.1| predicted protein [Populus trichocarpa] gi|118487446|gb|ABK95551.1| unknown [Populus trichocarpa] gi|222857127|gb|EEE94674.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/272 (71%), Positives = 216/272 (79%)

Query: 1   MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSG 60
           M+LN  T  SG   TN+  C       V AS+      +A L++R+S G      SWSS 
Sbjct: 1   MLLNDCTMPSGSGFTNTRACKTMPGIVVSASVPCTTARAALLNSRASLGRQLDSKSWSSR 60

Query: 61  GFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRW 120
           G P L LSAAS PLLSG+ G  +H IP+ P  RRS+  PRASKDVPYS+RFPPMTKKP W
Sbjct: 61  GLPSLLLSAASMPLLSGDYGRFSHNIPTYPRQRRSYSCPRASKDVPYSYRFPPMTKKPGW 120

Query: 121 WWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVA 180
           WWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFFVA
Sbjct: 121 WWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVA 180

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFL 240
           YLGVVRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGKLGMHFWTAVAF +L
Sbjct: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYL 240

Query: 241 FTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           FTVLECIRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 FTVLECIRCALAGMYADVPFACDAAYIQIPYD 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538742|ref|XP_002510436.1| conserved hypothetical protein [Ricinus communis] gi|223551137|gb|EEF52623.1| conserved hypothetical protein [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/276 (70%), Positives = 217/276 (78%), Gaps = 4/276 (1%)

Query: 1   MILNG--YTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGS-- 56
           MILNG    + SG    N+  C    N  V A +    T +A L  R+S      + S  
Sbjct: 1   MILNGCIVPSTSGYALINTRTCKPWPNSLVSACVPRLTTKAAFLDIRNSCTPVPNLESKF 60

Query: 57  WSSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTK 116
           W S G P L LSAASTPLLSG+QG + H IPS P  RR +L PRASKDVPYSFR+PPMTK
Sbjct: 61  WLSRGLPFLSLSAASTPLLSGDQGGIWHAIPSFPRQRRCYLCPRASKDVPYSFRYPPMTK 120

Query: 117 KPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAY 176
           KP+WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAY
Sbjct: 121 KPKWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAY 180

Query: 177 FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVA 236
           FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGK+GMHFWTA+A
Sbjct: 181 FFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAIA 240

Query: 237 FGFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           F +LFTVLECIRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 FAYLFTVLECIRCALAGMYADVPFACDAAYIQIPYD 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445477|ref|XP_004140499.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 1 [Cucumis sativus] gi|449445479|ref|XP_004140500.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 2 [Cucumis sativus] gi|449445481|ref|XP_004140501.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 3 [Cucumis sativus] gi|449510748|ref|XP_004163749.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 1 [Cucumis sativus] gi|449510754|ref|XP_004163750.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 2 [Cucumis sativus] gi|449510758|ref|XP_004163751.1| PREDICTED: protein TIC 20-I, chloroplastic-like isoform 3 [Cucumis sativus]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/272 (63%), Positives = 212/272 (77%), Gaps = 4/272 (1%)

Query: 1   MILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSG 60
           MILNG TT +GC  ++S K ++    S+   +  P   +   S RSSW  H    +   G
Sbjct: 1   MILNGCTTPTGCFFSDS-KLSIPSRSSI---LRNPRCSTQTASIRSSWEPHLKHQTCYYG 56

Query: 61  GFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRW 120
           G   L L AAS+P LSG+ G L HTIP LP  +   +SPRA+KD+P S+RFPPMT KP+W
Sbjct: 57  GLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKW 116

Query: 121 WWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFVA 180
           WWR+LA +PYLMP HETWMY+ETAYHLHPFLE+FE+LTYPFL A+G+LP WFLMAYFF+A
Sbjct: 117 WWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIA 176

Query: 181 YLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFL 240
           YLG+VRRKEWPHFFRFHVVMGML+EIALQV+GT S W+P  IYWGK+GMHFWTAV+FGF+
Sbjct: 177 YLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFM 236

Query: 241 FTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           FTV+EC RCAL GMYA++PF C+AA IQIP++
Sbjct: 237 FTVVECARCALAGMYAEVPFACEAAYIQIPFD 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335109|ref|NP_171986.3| translocon at the inner envelope membrane of chloroplasts 20 [Arabidopsis thaliana] gi|75151589|sp|Q8GZ79.1|TI201_ARATH RecName: Full=Protein TIC 20-I, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 20-I; Short=AtTIC20-I; Flags: Precursor gi|26449432|dbj|BAC41843.1| unknown protein [Arabidopsis thaliana] gi|332189644|gb|AEE27765.1| translocon at the inner envelope membrane of chloroplasts 20 [Arabidopsis thaliana]

 Score =  356 bits (913), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 215/274 (78%), Gaps = 3/274 (1%)

Query: 2   ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGS---WS 58
           ++ GY+T S  V  +S        R+           S+    ++SWG+     +     
Sbjct: 1   MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query: 59  SGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKP 118
           S G P+ +LSA+S+ LL+GEQGSL+ T+P LP+ R++ L+PRASKDVP SFRFPPMTKKP
Sbjct: 61  SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query: 119 RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFF 178
           +WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFF
Sbjct: 121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query: 179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG 238
           VAYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P G+YWGK GMHFWTAVAF 
Sbjct: 181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query: 239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           +LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843294|ref|XP_002889528.1| hypothetical protein ARALYDRAFT_887669 [Arabidopsis lyrata subsp. lyrata] gi|297335370|gb|EFH65787.1| hypothetical protein ARALYDRAFT_887669 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (912), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 182/273 (66%), Positives = 214/273 (78%), Gaps = 2/273 (0%)

Query: 2   ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWS--S 59
           ++ G +T S  V T+S        R+           S+    ++SWG+          S
Sbjct: 1   MIIGCSTPSAHVLTSSRAFKSSSYRAASGRTQHYLARSSLSVIKNSWGSPSPFNELPRVS 60

Query: 60  GGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPR 119
            G P+ +LSA+S+ LL+GEQGSL+ T+P LP+ R++ L+PRASKDVP SFRFPPMTKKP+
Sbjct: 61  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPIRRKTLLTPRASKDVPSSFRFPPMTKKPQ 120

Query: 120 WWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFV 179
           WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFFV
Sbjct: 121 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 180

Query: 180 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGF 239
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P G+YWGK GMHFWTAVAF +
Sbjct: 181 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 240

Query: 240 LFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 273

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6984128|gb|AAF34764.1|AF227619_1 Tic20-like protein [Euphorbia esula]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/274 (64%), Positives = 206/274 (75%), Gaps = 9/274 (3%)

Query: 1   MILNGYTTL--SGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWS 58
           MILNG T     GC   +++ CN +    V A    P   +   S+         + + +
Sbjct: 1   MILNGCTRPPGGGCAFPSNSTCNPRSGSLVSAVTTKPAFSNIRCSSIP-------IEALT 53

Query: 59  SGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKP 118
           S  +P   LS+ ST  L+GE+G + HT+PS P  + S LSPRA+KDVP SFRFPPMT+KP
Sbjct: 54  SRFWPSRGLSSGSTRFLTGEEGRIWHTLPSFPTHKNSKLSPRAAKDVPSSFRFPPMTRKP 113

Query: 119 RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFF 178
           RWWWR LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYF 
Sbjct: 114 RWWWRMLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFL 173

Query: 179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG 238
           VAY+GVVRRKEWPHFFRFH+VMGMLLEIALQV+GT S WLP  +YWGK GM  WTA+AF 
Sbjct: 174 VAYIGVVRRKEWPHFFRFHMVMGMLLEIALQVIGTVSRWLPLALYWGKFGMQVWTAIAFA 233

Query: 239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           +LFTVLECIRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 234 YLFTVLECIRCALAGMYADVPFACDAAYIQIPYD 267

Source: Euphorbia esula

Species: Euphorbia esula

Genus: Euphorbia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647620|gb|ACU24273.1| unknown [Glycine max]

 Score =  353 bits (906), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 179/273 (65%), Positives = 203/273 (74%), Gaps = 1/273 (0%)

Query: 1   MILNGYTTLSGCVPTNSNKCN-VQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSS 59
           MI NG     GC P NS   N V  + SVF      P   A  + RS WG +    S   
Sbjct: 1   MIQNGCIVSQGCAPLNSRSRNHVIPSTSVFRCASRMPPKVAVSNIRSFWGHNLEFQSLLP 60

Query: 60  GGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPR 119
            G  + +   AS+  +S  Q  L   +P LP  R+S++ PRASKDVP SFR+PPMTKKP+
Sbjct: 61  RGMALSNTFTASSLRVSEGQNFLFRVLPLLPHLRKSNMVPRASKDVPTSFRYPPMTKKPQ 120

Query: 120 WWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFV 179
           WWWRSLAC+PYLMPLHETWMYAETAY+LHPFLE FE+ TYPFL AIG LP WFLMAYFFV
Sbjct: 121 WWWRSLACLPYLMPLHETWMYAETAYNLHPFLECFEFYTYPFLMAIGSLPSWFLMAYFFV 180

Query: 180 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGF 239
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGKLGMHFWTAV+FG+
Sbjct: 181 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLSLYWGKLGMHFWTAVSFGY 240

Query: 240 LFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 LFTVLESIRCALVGMYADIPFICDAAYIQIPYD 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526159|ref|XP_003531687.1| PREDICTED: uncharacterized protein LOC100818669 [Glycine max]

 Score =  353 bits (906), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 179/273 (65%), Positives = 203/273 (74%), Gaps = 1/273 (0%)

Query: 1   MILNGYTTLSGCVPTNSNKCN-VQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSS 59
           MI NG     GC P NS   N V  + SVF      P   A  + RS WG +    S   
Sbjct: 1   MIQNGCIVSQGCAPLNSRSRNHVIPSTSVFRCASRMPPKVAVSNIRSFWGHNLEFQSLLP 60

Query: 60  GGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPR 119
            G  + +   AS+  +S  Q  L   +P LP  R+S++ PRASKDVP SFR+PPMTKKP+
Sbjct: 61  RGMTLSNTFTASSLRVSEGQNFLFRVLPLLPHLRKSNMVPRASKDVPTSFRYPPMTKKPQ 120

Query: 120 WWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFFV 179
           WWWRSLAC+PYLMPLHETWMYAETAY+LHPFLE FE+ TYPFL AIG LP WFLMAYFFV
Sbjct: 121 WWWRSLACLPYLMPLHETWMYAETAYNLHPFLECFEFYTYPFLMAIGSLPSWFLMAYFFV 180

Query: 180 AYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGF 239
           AYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P  +YWGKLGMHFWTAV+FG+
Sbjct: 181 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLSLYWGKLGMHFWTAVSFGY 240

Query: 240 LFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
           LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct: 241 LFTVLESIRCALVGMYADIPFICDAAYIQIPYD 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2010617	274	Tic20-I "translocon at the inn	0.996	0.989	0.664	1.3e-98
TAIR|locus:2125472	284	Tic20-IV "translocon at the in	0.665	0.637	0.411	1.4e-39
TAIR|locus:2043353	208	Tic20-II "translocon at the in	0.525	0.687	0.287	0.00026

TAIR|locus:2010617 Tic20-I "translocon at the inner envelope membrane of chloroplasts 20-I" [Arabidopsis thaliana (taxid:3702)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 182/274 (66%), Positives = 215/274 (78%)

Query:     2 ILNGYTTLSGCVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWS--- 58
             ++ GY+T S  V  +S        R+           S+    ++SWG+     +     
Sbjct:     1 MITGYSTPSAHVLMSSRAFKSSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRV 60

Query:    59 SGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKP 118
             S G P+ +LSA+S+ LL+GEQGSL+ T+P LP+ R++ L+PRASKDVP SFRFPPMTKKP
Sbjct:    61 SRGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKP 120

Query:   119 RWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYFF 178
             +WWWR+LAC+PYLMPLHETWMYAETAYHLHPFLEDFE+LTYPFL AIG+LP WFLMAYFF
Sbjct:   121 QWWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFF 180

Query:   179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG 238
             VAYLG+VRRKEWPHFFRFHVVMGMLLEIALQV+GT S W+P G+YWGK GMHFWTAVAF 
Sbjct:   181 VAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFA 240

Query:   239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
             +LFTVLE IRCAL GMYAD+PF CDAA IQIPY+
Sbjct:   241 YLFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2125472 Tic20-IV "translocon at the inner envelope membrane of chloroplasts 20-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 79/192 (41%), Positives = 117/192 (60%)

Query:    83 AHTIPSLPMSRRSHLSP----RASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETW 138
             A+ +P L    R H  P    R +KD  +  + P + ++P WWWR+LAC+PYL+ L    
Sbjct:    83 ANGLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPYLISLQ--- 139

Query:   139 MYAETAYHLHPFLEDFEYL---TYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFR 195
               ++  +++ PFLE  + +    Y    AI + P WF M Y ++ Y+ VV+ KE PH+ R
Sbjct:   140 -ISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLR 198

Query:   196 FHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMY 255
             FH++MGMLLE ALQV+   S + P   + G+ GM++W A+ F ++  +LECIRCAL G+Y
Sbjct:   199 FHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVY 258

Query:   256 ADLPFFCDAACI 267
             A +PF  DAA I
Sbjct:   259 AQIPFMTDAASI 270

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2043353 Tic20-II "translocon at the inner envelope membrane of chloroplasts 20-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
 Identities = 44/153 (28%), Positives = 67/153 (43%)

Query:   123 RSLACIPYLMPLHETWMYAETAYHLHPFLED-FEYLTYPFLEAIGKLPVWFLMAYFFVAY 181
             R ++   Y +P   +  Y    +  +P L   FE + +P L     +P    +A FF  Y
Sbjct:    60 RVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPI-FPILNLYRSVPYASFVA-FFGLY 117

Query:   182 LGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMH--FW--TAV-A 236
             LGVVR   +  + RF+ +  + L++ L V    +  L  G   G  GM    W  T V  
Sbjct:   118 LGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPG-QGGGFGMKAMMWGHTGVFV 176

Query:   237 FGFLFTVLECIRCALRGMYADLPFFCDAACIQI 269
             F F+  V   +  +L G    +PF  DAA  Q+
Sbjct:   177 FSFMCFVYGVVS-SLLGKTPYIPFVADAAGRQL 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.487    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       272   0.00099  114 3  11 22  0.40    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  250 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.51u 0.17s 22.68t   Elapsed:  00:00:01
  Total cpu time:  22.51u 0.17s 22.68t   Elapsed:  00:00:01
  Start:  Sat May 11 10:13:57 2013   End:  Sat May 11 10:13:58 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GZ79	TI201_ARATH	No assigned EC number	0.6642	0.9963	0.9890	yes	no
Q9ZST8	TIC20_PEA	No assigned EC number	0.6015	0.9227	0.9920	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
TIGR00994	267	TIGR00994, 3a0901s05TIC20, chloroplast protein imp	1e-120
pfam09685	104	pfam09685, Tic20, Tic20-like protein	7e-04

>gnl|CDD|233225 TIGR00994, 3a0901s05TIC20, chloroplast protein import component, Tic20 family

 Score =  344 bits (883), Expect = e-120
 Identities = 156/275 (56%), Positives = 184/275 (66%), Gaps = 11/275 (4%)

Query: 1   MILNGYTTLSG---CVPTNSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSW 57
           MI NG TT +G       +S       N  VF      P   A    R S  +   +   
Sbjct: 1   MIGNGATTTNGGSLTFLAHSPISKKFVNPRVFF-----PNKDASSKIRLSASS---ISRR 52

Query: 58  SSGGFPVLHLSAASTPLLSGEQGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKK 117
                  L  SA+S   L+G    L  T P LP  RRS   PRA+KD    FRFPPMT+K
Sbjct: 53  CPREIAPLSASASSDFALAGTSNGLPPTAPGLPTHRRSIEPPRAAKDDFSKFRFPPMTEK 112

Query: 118 PRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLTYPFLEAIGKLPVWFLMAYF 177
           PRWWWR+LAC+PYL+PLH +WMYA+TAYHLHPFLE F+ +TYPFL AIG+LP WFLMAYF
Sbjct: 113 PRWWWRTLACVPYLIPLHISWMYADTAYHLHPFLEKFDAITYPFLGAIGRLPTWFLMAYF 172

Query: 178 FVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAF 237
            +AY+ VVRRKEWPHFFRFH++MGMLLEIALQV+G  S W P   YWGK GM++WTA+ F
Sbjct: 173 LLAYMWVVRRKEWPHFFRFHMMMGMLLEIALQVIGCVSRWFPLIHYWGKFGMYYWTAIGF 232

Query: 238 GFLFTVLECIRCALRGMYADLPFFCDAACIQIPYE 272
            +LFT+LECIRCAL GMYAD+PF CDAA IQIP+ 
Sbjct: 233 TYLFTLLECIRCALAGMYADVPFMCDAAYIQIPFN 267

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 267

>gnl|CDD|220342 pfam09685, Tic20, Tic20-like protein

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 17/106 (16%)

Query: 156 YLTYPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTAS 215
           +L+ PF   IG L +W +             +K+   F RFH    +  +I+L +     
Sbjct: 10  HLSGPFGGIIGPLIIWLV-------------KKDKSPFVRFHGKEALNFQISLLIYTVIL 56

Query: 216 TWLPYGIYWGKLGMHFWTAVA-FGFLFTVLECIRCALRGMYADLPF 260
             L + + +  +G      +     +FT++  I+ A  G     P 
Sbjct: 57  GILSFILGF--IGFLLLILLWILSLVFTIIAAIK-ANNGEPYRYPL 99

Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic20, a core member of the Tic complex. This protein is deeply embedded in the inner envelope membrane and is thought to function as a protein- conducting component of the Tic complex. This family also includes many proteins of unknown function from non-synthetic organisms. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
TIGR00994	267	3a0901s05TIC20 chloroplast protein import componen	100.0
COG4818	105	Predicted membrane protein [Function unknown]	99.7
PF09685	109	Tic20: Tic20-like protein; InterPro: IPR019109 Thi	98.71

>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family

Probab=100.00  E-value=3.4e-88  Score=616.07  Aligned_cols=265  Identities=58%  Similarity=1.050  Sum_probs=258.0

Q ss_pred             CcccCccccCCCccC--CCCCCCCccccccccccCCCCCccccccccccCCCCCCcCcCCCCCCCcccccccccCccccC
Q 024089            1 MILNGYTTLSGCVPT--NSNKCNVQQNRSVFASILGPPTHSAGLSTRSSWGTHHWVGSWSSGGFPVLHLSAASTPLLSGE   78 (272)
Q Consensus         1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~   78 (272)
                      ||+||||+++|++++  +.++||+++++.+++    .|+|+|++++|.|||++.+.|   +||++++.+||+||++++||
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   73 (267)
T TIGR00994         1 MIGNGATTTNGGSLTFLAHSPISKKFVNPRVF----FPNKDASSKIRLSASSISRRC---PREIAPLSASASSDFALAGT   73 (267)
T ss_pred             CcccCceeCCCCeeeccCcccccCCCCCccee----cCchHHHHHhhhccccccccC---CCCCCccccccccchhhccC
Confidence            999999999998888  999999998888776    999999999999999999888   89999999999999999999


Q ss_pred             CCCccccCCCCCCCcCCCCCCCcccCCCCCccCCCCCCCCChHHHHHHHHHHHhhhhhhHHhHHHhhhhcChhHHHHhhh
Q 024089           79 QGSLAHTIPSLPMSRRSHLSPRASKDVPYSFRFPPMTKKPRWWWRSLACIPYLMPLHETWMYAETAYHLHPFLEDFEYLT  158 (272)
Q Consensus        79 ~~~~~~~~p~~~~~~~~~~~~RA~k~~~~~~~~p~n~~kP~~~~R~lA~LpYLLPL~d~l~fG~~l~~~fP~l~~l~~~~  158 (272)
                      ||++++++|.+|||||+.++|||+||++++|+||+|++||+||||++||+||+|||+|+|+||+++|+|||+++.+..++
T Consensus        74 ~~~~~~~~p~~~~~~~~~~~pra~~~~~~~~~~p~~~~kp~~w~RilA~LpYLLPL~dal~fg~~lf~qfP~L~~l~~pl  153 (267)
T TIGR00994        74 SNGLPPTAPGLPTHRRSIEPPRAAKDDFSKFRFPPMTEKPRWWWRTLACVPYLIPLHISWMYADTAYHLHPFLEKFDAIT  153 (267)
T ss_pred             CCCCcccCCcchhccCCCCCcchhcccccccCCCccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhccchHHHHHHHHHHHHHHHcCCCCCceehhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHH
Q 024089          159 YPFLEAIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFG  238 (272)
Q Consensus       159 ~Pll~~~~slP~~~~liiFf~LyL~VVRN~~is~FVRFNaMQAILLdI~L~l~~li~~~lP~~~g~g~lg~~~~~~vfl~  238 (272)
                      +|++.+++++|+|+.+++||++|++||||+++|||+|||+||||||||++++++++++++|..++||.+++++|.+++++
T Consensus       154 ~Pl~~i~~~lPf~~~lv~Ff~Lyl~VVRN~~iphFIRFNtMQAILLDI~L~l~g~v~~~lp~~~~~g~~~~~ifl~vl~~  233 (267)
T TIGR00994       154 YPFLGAIGRLPTWFLMAYFLLAYMWVVRRKEWPHFFRFHMMMGMLLEIALQVIGCVSRWFPLIHYWGKFGMYYWTAIGFT  233 (267)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            99999999999877799999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             HHHHHHHHHHHhhcCcccCcchhhHHHhhccCCC
Q 024089          239 FLFTVLECIRCALRGMYADLPFFCDAACIQIPYE  272 (272)
Q Consensus       239 ~l~~vi~ci~~Al~G~ya~IP~ISeAA~~Qv~~~  272 (272)
                      ++|+++||++||+.|+|||||+||||||+|++||
T Consensus       234 ~ifsviqcircAL~G~YaeIP~ISdAAymQi~~~  267 (267)
T TIGR00994       234 YLFTLLECIRCALAGMYADVPFMCDAAYIQIPFN  267 (267)
T ss_pred             HHHHHHHHHHHHhCCCcCCCchHHHHHHhhccCC
Confidence            9999999999999999999999999999999998

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.

>COG4818 Predicted membrane protein [Function unknown]

Probab=99.70  E-value=5.4e-17  Score=130.36  Aligned_cols=83  Identities=28%  Similarity=0.380  Sum_probs=72.1

Q ss_pred             HHHHHHHcCCCCCceehhHHHHHHHHHHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCc
Q 024089          179 VAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADL  258 (272)
Q Consensus       179 ~LyL~VVRN~~is~FVRFNaMQAILLdI~L~l~~li~~~lP~~~g~g~lg~~~~~~vfl~~l~~vi~ci~~Al~G~ya~I  258 (272)
                      ++|++.+|+   |+||||||||+.++...+.++.++..++|.+ ||  +.+.+.+   ++.+..|+.||.+|++|+..|+
T Consensus        19 llFlllEre---~~FVrFHAmQS~ltF~~l~~l~ill~~iP~I-g~--lls~~v~---l~a~iLwlv~mykAyrGe~fKl   89 (105)
T COG4818          19 LLFLLLERE---SKFVRFHAMQSFLTFLGLWLLIILLAFIPYI-GW--LLSGLVG---LAAFILWLVCMYKAYRGERFKL   89 (105)
T ss_pred             HHHHHhhcc---CcceeehhHHHHHHHHHHHHHHHHHHHhhhh-HH--HHHhHHH---HHHHHHHHHHHHHHHcCCeecC
Confidence            356778998   8999999999999999999999999999986 44  4444444   4677899999999999999999


Q ss_pred             chhhHHHhhccC
Q 024089          259 PFFCDAACIQIP  270 (272)
Q Consensus       259 P~ISeAA~~Qv~  270 (272)
                      |+++|.||.|+.
T Consensus        90 Pv~GdiAe~~~~  101 (105)
T COG4818          90 PVVGDIAEQQIY  101 (105)
T ss_pred             ceechHHHHHHh
Confidence            999999999984

>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20

Probab=98.71  E-value=2.7e-07  Score=72.53  Aligned_cols=80  Identities=16%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             HHHcCCCCCceehhHHHHHHHHHHHHHHHHHHHhhchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCcchh
Q 024089          183 GVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGI-YWGKLGMHFWTAVAFGFLFTVLECIRCALRGMYADLPFF  261 (272)
Q Consensus       183 ~VVRN~~is~FVRFNaMQAILLdI~L~l~~li~~~lP~~~-g~g~lg~~~~~~vfl~~l~~vi~ci~~Al~G~ya~IP~I  261 (272)
                      .++|+++ ++|+|+|+.||+...+...+..++...+.... ....++..++..+.+..+...++++.+|..|+..+.|++
T Consensus        27 ~~~~k~~-~~~vr~ha~qal~~~i~~~i~~~i~~~l~~~~~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~~  105 (109)
T PF09685_consen   27 WIVKKDK-SPFVRFHAKQALNFQITFLIISIILFILSFILIFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPFI  105 (109)
T ss_pred             HHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCee
Confidence            3556666 99999999999999999988888877764432 111223333333334556667778889999999999998


Q ss_pred             hH
Q 024089          262 CD  263 (272)
Q Consensus       262 Se  263 (272)
                      ++
T Consensus       106 ~~  107 (109)
T PF09685_consen  106 GK  107 (109)
T ss_pred             ec
Confidence            76

Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00