Citrus Sinensis ID: 024097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccHHcHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEEEEEccEEEEcccccccccccccccccEEEEEEEcccccEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEccccccEEcccccccHHHHHHHHHHHHHHccccEEEEEEEcccc
Coil and Loop (DISEMBL)
MASSLVANRFAFVLLKTEKTVAkfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtpplydyiLRNVREPEILRQLREEtagmrgsqmqvsPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVlpesgclvaCERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILngeassydfaFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA
Flexible Loop (DISEMBL)
MASSLVANRFAFVLlktektvakfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtppLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYyeragvshkvkiKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRnfnknlmedervsismkevqda
Low Complexity Region (SEG)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA
Disordered region (IsUnstruct)
****LVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEIL*********************AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFN*******************
Disordered Region (DISOPRED)
*********FAF*LL******************************************************PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA
Disordered Region (DISEMBL)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREET***********PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS*********
Disordered Region (DISPRO)
*ASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q9XGP7	252	Tricin synthase 1 OS=Oryz	no	no	0.812	0.876	0.418	9e-42
Q00719	221	O-methyltransferase MdmC	N/A	no	0.753	0.927	0.382	2e-38
Q9C5D7	232	Probable caffeoyl-CoA O-m	no	no	0.727	0.853	0.422	4e-37
Q9XGD5	264	Caffeoyl-CoA O-methyltran	N/A	no	0.731	0.753	0.422	3e-35
Q86IC9	230	Probable caffeoyl-CoA O-m	yes	no	0.632	0.747	0.416	9e-35
Q86IC8	231	Probable caffeoyl-CoA O-m	yes	no	0.632	0.744	0.416	1e-34
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.687	0.806	0.415	6e-34
P93711	235	Caffeoyl-CoA O-methyltran	N/A	no	0.698	0.808	0.395	1e-33
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.735	0.829	0.382	1e-33
Q9C9W4	233	Tapetum-specific methyltr	no	no	0.775	0.905	0.379	1e-33

>sp|Q9XGP7|OMT15_ORYSJ Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 138/234 (58%), Gaps = 13/234 (5%)

Query: 52  VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
           + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct: 11  IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
           QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct: 71  QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query: 169 VSHKVKIKHGLAADSLKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 224
           V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E LLQL+RVGG 
Sbjct: 131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGH 190

Query: 225 IVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMKEVQDA 272
           IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +    + D 
Sbjct: 191 IVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADG 244

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl-CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 5

>sp|Q00719|MDMC_STRMY O-methyltransferase MdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1

 Score =  159 bits (401), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 130/209 (62%), Gaps = 4/209 (1%)

Query: 67  SVTPPLYDYILRNV--REPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRC 123
           +++P L DY  R+V  RE  +LR+L + TA + G + MQ+ P++AQ L +L++++GA+R 
Sbjct: 6   TLSPALLDYA-RSVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRV 64

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +E+G +TGYS+L +A  LP  G +V C+   +   +   +++RAGV   + ++ G AA +
Sbjct: 65  LEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAART 124

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVND 243
           L  L       ++D  FVDA+K  Y  Y+E  L L+R GG++ IDN L+ G+VAD   +D
Sbjct: 125 LAELRERDGDGAFDLVFVDADKAGYLHYYEQALALVRPGGLVAIDNTLFFGRVADPAADD 184

Query: 244 AKTISIRNFNKNLMEDERVSISMKEVQDA 272
             T+++R  N  L +DERV I++  V D 
Sbjct: 185 PDTVAVRTLNDLLRDDERVDIALLTVADG 213

4-O-methyltransferase for the lactone ring of midecamycin and other macrolide antibiotics.

Streptomyces mycarofaciens (taxid: 1949)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 120/213 (56%), Gaps = 15/213 (7%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct: 15  LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct: 75  FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query: 189 LNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW G VA+    D+ T 
Sbjct: 135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEP---DSSTP 191

Query: 248 SIR--------NFNKNLMEDERVSISMKEVQDA 272
             R          NK L  D+RV IS   + D 
Sbjct: 192 EWRIEVKKATLELNKKLSADQRVQISQAALGDG 224

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9XGD5|CAMT2_MAIZE Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=CCOAOMT2 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 124/213 (58%), Gaps = 14/213 (6%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++GA++ +E+GV
Sbjct: 46  LYQYILDTSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGV 105

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+      +AGV HK+  + G A   L  L+
Sbjct: 106 YTGYSLLATALALPEDGTILAMDINRENYELGLPCINKAGVGHKIDFREGPALPVLDDLV 165

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA--- 244
            + E   S+DFAFVDA+K  Y  Y E LL+L+R GG+I  DN LW+G V   + +DA   
Sbjct: 166 ADKEQHGSFDFAFVDADKDNYLNYHERLLKLVRPGGLIGYDNTLWNGSVV--LPDDAPMR 223

Query: 245 KTISI-RNF----NKNLMEDERVSISMKEVQDA 272
           K I   R+F    N  L  D+RV I    V D 
Sbjct: 224 KYIRFYRDFVLALNSALAADDRVEICQLPVGDG 256

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC9|CAMT1_DICDI Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1

 Score =  147 bits (370), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 50  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHA 109

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+LIR
Sbjct: 110 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKLIR 169

Query: 221 VGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMKEVQDA 272
            GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ +M  + D 
Sbjct: 170 KGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKTMLPIADG 222

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC8|CAMT2_DICDI Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 51  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHA 110

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+LIR
Sbjct: 111 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKLIR 170

Query: 221 VGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMKEVQDA 272
            GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ S+  + D 
Sbjct: 171 KGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKSLLPIADG 223

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 117/202 (57%), Gaps = 15/202 (7%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+TGYS L  A
Sbjct: 28  REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNGEASSYD 197
           L LPE G + A + D  + EV  ++ ++AGV HK+   H   +D LKAL  L  +   +D
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDGLKALDQLVNDKCEFD 144

Query: 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR------- 250
           FAF DA+K  Y  + E LL+L++VGGII  DN LW G VA+    D     +R       
Sbjct: 145 FAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAED--EDGVPEHMREYRAALI 202

Query: 251 NFNKNLMEDERVSISMKEVQDA 272
            FNK L  D RV +S   + D 
Sbjct: 203 EFNKKLALDPRVEVSQISIGDG 224

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P93711|CAMT_POPKI Caffeoyl-CoA O-methyltransferase OS=Populus kitakamiensis PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 10/200 (5%)

Query: 82  EPEILRQLREETAGMRGS--QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL 139
           E E L++LRE T    GS   M V  D+ + L+ML++++ A+R +EVGV+TGYS L+ AL
Sbjct: 29  EHEQLKELREATTKKYGSLSGMSVPVDEGRFLSMLLKLMNAKRTLEVGVFTGYSLLSTAL 88

Query: 140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199
            LPE G + A ++D  + E+   + ++AGV  K+      A   L  ++ N +   +DFA
Sbjct: 89  ALPEDGQVTAIDKDRGAYEIGLPFIQKAGVEDKINFIQSEAPPILNEMLCNDKQPEFDFA 148

Query: 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVND-------AKTISIRNF 252
           FVDA+K  Y+ Y E LL+L+++GGII  DN LW+G VA ++ ++        +T+ I  F
Sbjct: 149 FVDADKSSYKHYHEQLLKLVKIGGIIAYDNTLWYGLVAKEVDDEVPEPLRMVRTV-IMEF 207

Query: 253 NKNLMEDERVSISMKEVQDA 272
           NK L  D RV IS   + D 
Sbjct: 208 NKLLSSDLRVEISQISIGDG 227

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 121/212 (57%), Gaps = 12/212 (5%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 23  LYQYILETSVYPREPEAMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGV 82

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LP+ G ++A + +  + E+     E+AGV HK+  + G A   L  ++
Sbjct: 83  YTGYSLLATALALPDDGKILAMDINRENYEIGLPIIEKAGVGHKIDFREGPALPVLDHML 142

Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            +G+   ++DF FVDA+K  Y  Y + L+ L+++GG+I  DN LW+G VA Q  +     
Sbjct: 143 EDGKYHGTFDFVFVDADKDNYINYHKRLIDLVKIGGLIGYDNTLWNGSVA-QPADAPMRK 201

Query: 248 SIRNF-------NKNLMEDERVSISMKEVQDA 272
            +R +       NK L  D R+ I M  V D 
Sbjct: 202 YVRYYRDFVIELNKALAADPRIEICMLPVGDG 233

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W4|TSM1_ARATH Tapetum-specific methyltransferase 1 OS=Arabidopsis thaliana GN=TSM1 PE=1 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 131/229 (57%), Gaps = 18/229 (7%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
           D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct: 2   DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct: 61  SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query: 172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
           K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E LL+L++VGGII  DN
Sbjct: 121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDN 177

Query: 230 VLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMKEVQDA 272
            LW G +  Q  N+      A   ++  FNK L  D RV I+   + D 
Sbjct: 178 TLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDG 225

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
255548155	290	o-methyltransferase, putative [Ricinus c	0.996	0.934	0.685	1e-105
297821086	278	O-methyltransferase family 3 protein [Ar	0.974	0.953	0.669	1e-103
224068269	352	trans-caffeoyl-coa 3-o-methyltransferase	0.849	0.656	0.761	1e-103
15228652	278	S-adenosyl-L-methionine-dependent methyl	0.974	0.953	0.672	1e-103
225453692	280	PREDICTED: probable caffeoyl-CoA O-methy	0.801	0.778	0.816	1e-102
388521881	314	unknown [Lotus japonicus]	0.937	0.812	0.671	1e-102
334186194	352	S-adenosyl-L-methionine-dependent methyl	0.952	0.735	0.672	1e-102
356525835	311	PREDICTED: O-methyltransferase mdmC-like	0.878	0.768	0.748	1e-102
356555143	242	PREDICTED: LOW QUALITY PROTEIN: probable	0.834	0.938	0.748	3e-95
449460066	293	PREDICTED: tricin synthase 1-like [Cucum	0.919	0.853	0.651	2e-93

>gi|255548155|ref|XP_002515134.1| o-methyltransferase, putative [Ricinus communis] gi|223545614|gb|EEF47118.1| o-methyltransferase, putative [Ricinus communis]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/280 (68%), Positives = 222/280 (79%), Gaps = 9/280 (3%)

Query: 2   ASSLVANRFAFVLLKTEKTVAK-FHSFPLSERLRLRPCK--------FKTKNQFTTNCCV 52
           A +   NR +F+  +     A      PL   +  R CK          + +  +++  V
Sbjct: 4   ACAWAVNRCSFLACQRATFAATVIRGRPLRIAISFRECKSIRFARNCCCSSSSTSSDLAV 63

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA 112
             A+D+KY NKQ+IS+TP LYDYIL NVREPEILRQLREETA M GSQMQVSPDQAQLLA
Sbjct: 64  VVANDDKYGNKQIISLTPCLYDYILSNVREPEILRQLREETAAMPGSQMQVSPDQAQLLA 123

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           MLVQILGA+RCIE+GVYTGYSSLA+ALVLPESGCLVACERDA SL VA+KYYERAGVSHK
Sbjct: 124 MLVQILGAKRCIELGVYTGYSSLAVALVLPESGCLVACERDANSLNVAQKYYERAGVSHK 183

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232
           V +KHG+AADSLK+LILNGE SSYDFAFVDAEK+M QEYFELLLQL+RVGG+IV+DNVLW
Sbjct: 184 VHVKHGMAADSLKSLILNGEESSYDFAFVDAEKKMNQEYFELLLQLVRVGGVIVVDNVLW 243

Query: 233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           HGKVAD ++NDA+T+SIRNFNK LMED RVSISM  + D 
Sbjct: 244 HGKVADPLINDARTVSIRNFNKTLMEDNRVSISMVSIGDG 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821086|ref|XP_002878426.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata] gi|297324264|gb|EFH54685.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/278 (66%), Positives = 224/278 (80%), Gaps = 13/278 (4%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSA----- 55
           M++ L  NR +  + +T  T+    +  +     +R  KF   ++   NC ++ A     
Sbjct: 1   MSTGLALNRCSISVCRTAGTLLNRPTVSV-----VRSLKFS--HRLIGNCSIAPADPVVV 53

Query: 56  -HDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D KY NK+VIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  AEDVKYGNKEVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+LGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YY+ AGVSHKV 
Sbjct: 114 VQLLGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYKLAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           +V D +VNDAKTISIRNFNK LM+D+RVSISM  + D 
Sbjct: 234 RVTDPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDG 271

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068269|ref|XP_002302692.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa] gi|222844418|gb|EEE81965.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/247 (76%), Positives = 207/247 (83%), Gaps = 16/247 (6%)

Query: 35  LRPCKFKTKNQFTTNCCVSS-------------AHDEKYSNKQVISVTPPLYDYILRNVR 81
            R CK     +   NCC  S             A+DEKY NKQ IS+TP LYDYIL NVR
Sbjct: 37  FRACK---PIRLARNCCSYSCSYPNPNDSAFVVANDEKYGNKQNISLTPRLYDYILSNVR 93

Query: 82  EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL 141
           EPEILRQLREETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIE+GVYTGYSSLA+ALVL
Sbjct: 94  EPEILRQLREETASMRGSQMQVSPDQAQLLAMLVQILGAKRCIELGVYTGYSSLAVALVL 153

Query: 142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
           P+S CLVACERDA+SLEVAKKYYE AGVSHKV +KHG+AAD LK+LILNGE+ SYDFAFV
Sbjct: 154 PDSACLVACERDAKSLEVAKKYYELAGVSHKVDVKHGMAADILKSLILNGESCSYDFAFV 213

Query: 202 DAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER 261
           DAEKRM QEYFELLLQL+RV G+IVIDNVLWHGKVAD +VNDAKT+SIR+FNKN+MED R
Sbjct: 214 DAEKRMNQEYFELLLQLVRVDGVIVIDNVLWHGKVADPLVNDAKTVSIRSFNKNIMEDPR 273

Query: 262 VSISMKE 268
           VSISM +
Sbjct: 274 VSISMTQ 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228652|ref|NP_191759.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|6899898|emb|CAB71907.1| putative protein [Arabidopsis thaliana] gi|17979264|gb|AAL49948.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|20334816|gb|AAM16164.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|332646770|gb|AEE80291.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/278 (67%), Positives = 221/278 (79%), Gaps = 13/278 (4%)

Query: 1   MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS 54
           M++ L  NR +  + +T        TV+   S   S RL +  C     + +        
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRL-IGNCSIAPADPYVV------ 53

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           +V+D MVNDAKTISIRNFNK LM+D+RVSISM  + D 
Sbjct: 234 RVSDPMVNDAKTISIRNFNKKLMDDKRVSISMVPIGDG 271

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453692|ref|XP_002269070.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera] gi|296089045|emb|CBI38748.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/218 (81%), Positives = 201/218 (92%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           + D KY NKQVI++TP LYDYIL NVREPEILRQLREETA MRGSQMQVSP+QAQLLAML
Sbjct: 56  SDDPKYGNKQVITITPRLYDYILTNVREPEILRQLREETANMRGSQMQVSPEQAQLLAML 115

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLAIALVLPESG LVACERD++SLEVAK+YY++AGVSHKV 
Sbjct: 116 VQILGAERCIEVGVYTGYSSLAIALVLPESGYLVACERDSKSLEVAKRYYKQAGVSHKVD 175

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +KHGLA+D+LK+LILNGE+ SYDFAFVDAEKRM QEYFELLLQL+R  G+IVIDNVLWHG
Sbjct: 176 VKHGLASDALKSLILNGESGSYDFAFVDAEKRMNQEYFELLLQLVRTRGVIVIDNVLWHG 235

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           KVAD +VNDA+T+SIRNFNKN+MED+RVSISM  + D 
Sbjct: 236 KVADPLVNDARTVSIRNFNKNIMEDKRVSISMVPIGDG 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521881|gb|AFK49002.1| unknown [Lotus japonicus]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/286 (67%), Positives = 218/286 (76%), Gaps = 31/286 (10%)

Query: 15  LKTEKTVAKFHSFPLS-------------------------ERLRLRPCKFKTKNQFTTN 49
           L+  K    FHSFP S                            RLR CK+K   Q   +
Sbjct: 25  LRPVKVFTSFHSFPSSCTVNHRSLHVSTARWCCSASSCSSRCCFRLRGCKWK---QVVRS 81

Query: 50  CCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPD 106
           C ++    A DE Y NKQV+S+TP LY Y+L+NVREPEILRQLREETA MRGSQMQVSPD
Sbjct: 82  CSITDIVIASDESYGNKQVVSLTPRLYGYVLKNVREPEILRQLREETASMRGSQMQVSPD 141

Query: 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166
           QAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA ERD +SL+VAKKYY+ 
Sbjct: 142 QAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGRLVARERDPKSLDVAKKYYQL 201

Query: 167 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226
           AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEKRM Q+YFELLLQL+RVGG+IV
Sbjct: 202 AGVSHKVDVKLGLAEDSLESLILNGEAGSYDFAFIDAEKRMTQKYFELLLQLVRVGGVIV 261

Query: 227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           IDNVLWHGKVAD +V+D+KTISIRNFN+ LMED+RVSISM  + D 
Sbjct: 262 IDNVLWHGKVADPLVSDSKTISIRNFNQQLMEDKRVSISMVPIGDG 307

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186194|ref|NP_001190157.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332646771|gb|AEE80292.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 220/272 (80%), Gaps = 13/272 (4%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAH---- 56
           M++ L  NR +  + +T  T+    +  ++  L+          +   NC ++ A     
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKF-------SRRLIGNCSIAPADPYVV 53

Query: 57  --DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNVLWHG
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISM 266
           +V+D MVNDAKTISIRNFNK LM+D+RVSISM
Sbjct: 234 RVSDPMVNDAKTISIRNFNKKLMDDKRVSISM 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525835|ref|XP_003531527.1| PREDICTED: O-methyltransferase mdmC-like [Glycine max]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/243 (74%), Positives = 211/243 (86%), Gaps = 4/243 (1%)

Query: 33  LRLRPCKFKTKNQFTTNCCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQL 89
            R R C+ + K +   +C  S    ++DE YSNKQV+S+TP LYDY+L+NVREPEILRQL
Sbjct: 63  FRFRECRCRWK-RIVRSCSTSEFVISNDENYSNKQVVSLTPRLYDYVLKNVREPEILRQL 121

Query: 90  REETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVA 149
           R+ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA
Sbjct: 122 RQETASMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGHLVA 181

Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ 209
           CERDA+SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEK+M +
Sbjct: 182 CERDAKSLDVAKKYYQLAGVSHKVDVKLGLAMDSLESLILNGEAGSYDFAFIDAEKKMNE 241

Query: 210 EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEV 269
           +YFELLLQL+RVGG+IVIDNVLWHGKV+D +VND KTISIRNFN+ LMED+RVSISM  +
Sbjct: 242 KYFELLLQLVRVGGLIVIDNVLWHGKVSDPLVNDPKTISIRNFNEKLMEDKRVSISMVPI 301

Query: 270 QDA 272
            D 
Sbjct: 302 GDG 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555143|ref|XP_003545896.1| PREDICTED: LOW QUALITY PROTEIN: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/227 (74%), Positives = 194/227 (85%)

Query: 46  FTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSP 105
           F T      A D+ Y  KQV+S+TP LYDY+L+NVREPEILRQLR+ET  M GSQM VSP
Sbjct: 9   FITTTEFVIASDDNYGKKQVVSLTPFLYDYVLKNVREPEILRQLRQETTSMLGSQMXVSP 68

Query: 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 165
           D AQLLAMLVQILGA++CIEVGVYTGYSSLA+ALVLPESG LVACERDA+SL+VAKKYY+
Sbjct: 69  DLAQLLAMLVQILGAEQCIEVGVYTGYSSLALALVLPESGRLVACERDAKSLDVAKKYYQ 128

Query: 166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 225
            AGVSHKV +K GLA DSL++LILNGEA SYDFAF DAEK+M ++YFELLLQL+RVGG+I
Sbjct: 129 LAGVSHKVDVKVGLAMDSLESLILNGEAGSYDFAFTDAEKKMNEKYFELLLQLVRVGGLI 188

Query: 226 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           VIDNVLWHGKVAD +VND KT SIRNFN+ LMED+RVSISM  + D 
Sbjct: 189 VIDNVLWHGKVADPLVNDPKTFSIRNFNQKLMEDKRVSISMVPIGDG 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460066|ref|XP_004147767.1| PREDICTED: tricin synthase 1-like [Cucumis sativus]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 181/278 (65%), Positives = 208/278 (74%), Gaps = 28/278 (10%)

Query: 23  KFHSFP---LSERLRLRPC----KFKT-KNQFTTNCCV--------------------SS 54
           +F S+P   L++   L P       KT K  F+ +CCV                    S+
Sbjct: 9   RFMSYPQNLLTKFSSLSPVTAFPSIKTVKGAFSCSCCVVCQFNLDDFSSKKRHLERVYST 68

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             + K+SNKQ ISV   LYDYIL NVREPEIL QLREETA MRGS+MQVSPDQAQLLAML
Sbjct: 69  NSNGKFSNKQFISVDSELYDYILSNVREPEILAQLREETASMRGSKMQVSPDQAQLLAML 128

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+RD   LEVAK+YYE AGVSHKV 
Sbjct: 129 VQILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDRDLECLEVAKRYYELAGVSHKVD 188

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++HGLAAD+LK+LI NGEASSYDFAF+DAEKRM +EYFELLLQL+RV G+IVIDNVLW+G
Sbjct: 189 VRHGLAADTLKSLIANGEASSYDFAFIDAEKRMNEEYFELLLQLVRVRGLIVIDNVLWYG 248

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           KVAD MV+D  T SIR  NK +MED+RV ISM  + D 
Sbjct: 249 KVADPMVDDKMTDSIRRLNKKIMEDDRVGISMVPIGDG 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.867	0.813	0.712	1.5e-83
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.772	0.786	0.436	4.6e-41
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.738	0.702	0.425	5.9e-41
TIGR_CMR|CBU_0924	222	CBU_0924 "O-methyltransferase"	0.75	0.918	0.422	7.5e-41
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.808	0.873	0.420	3.3e-40
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.735	0.862	0.421	6.5e-35
UNIPROTKB|A4IFU3	262	COMTD1 "COMTD1 protein" [Bos t	0.738	0.767	0.376	2e-33
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.772	0.901	0.381	3.2e-33
DICTYBASE|DDB_G0275501	231	omt6 "O-methyltransferase fami	0.628	0.740	0.418	4.1e-33
MGI|MGI:1916406	262	Comtd1 "catechol-O-methyltrans	0.735	0.763	0.379	4.1e-33

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 171/240 (71%), Positives = 198/240 (82%)

Query:    33 LRL-RPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLRE 91
             +RL RP      N  T    +  A DEKY NK VIS+TP LYDY+L NVRE EIL+QLRE
Sbjct:    46 IRLNRPTDSVVGNCPTEASPLVMADDEKYGNKMVISLTPRLYDYVLNNVREHEILKQLRE 105

Query:    92 ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE 151
             ETA    SQ+QVSPDQAQLLAMLV+ILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+
Sbjct:   106 ETAI---SQIQVSPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACD 162

Query:   152 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 211
             +DA +LEVAK+YYE AGVSHKV +KHGLAA+SL ++I NGE SSYDFAF+DA+K MYQEY
Sbjct:   163 KDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMIQNGEESSYDFAFLDADKAMYQEY 222

Query:   212 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQD 271
             FE LL+L+RVGG+IVIDNVLWHG VAD  VND +TIS+RNFNK LM+D+RVSISM  + D
Sbjct:   223 FESLLRLVRVGGVIVIDNVLWHGWVADSTVNDERTISLRNFNKKLMDDQRVSISMVSIGD 282

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 92/211 (43%), Positives = 140/211 (66%)

Query:    62 NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
             +K +I  + PL+ YIL  ++RE  IL++LR  TA     +M VS DQAQL+A L++++ A
Sbjct:    49 HKSIIGKSSPLWQYILDHSLREHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKA 108

Query:   121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
             ++ IEVGV TGY++L++AL LP++G ++AC+ +    ++ K  ++ AGV HK+ ++   A
Sbjct:   109 KKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPA 168

Query:   181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
               +L  L+  GEA ++DFAF+DA+K  Y EY+E  L+LI+ GGII IDNVL  G V    
Sbjct:   169 TQTLDELLAGGEAETFDFAFIDADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPR 228

Query:   241 VNDAKTISIRNFNKNLMEDERVSISMKEVQD 271
              +D  T SI + N+ L+ D RV+ISM  + D
Sbjct:   229 KDDLATQSIHHLNEKLVRDARVNISMIPMGD 259

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 86/202 (42%), Positives = 135/202 (66%)

Query:    71 PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL  Y++ N +RE  +L +LR  T     + M V+ +QAQL+A L +++ A + IE+G+Y
Sbjct:    77 PLLQYVVNNSLREHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEIGLY 136

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGY++L++ALV+PE+G +VACE +   +++ K ++  AGV +K+ I+   A ++L  L+ 
Sbjct:   137 TGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKIDIRLKPAVETLDELLS 196

Query:   190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISI 249
              GEA  YDF F+DA+K+ Y+ Y+E  LQL+R GGI+ IDNVLW G+V +   +D  + +I
Sbjct:   197 AGEAGMYDFVFIDADKKNYETYYEKSLQLVRKGGIVAIDNVLWGGRVINPAEDDLSSQAI 256

Query:   250 RNFNKNLMEDERVSISMKEVQD 271
                NK L +DER+ +SM  V D
Sbjct:   257 DKLNKKLHKDERIDLSMLTVGD 278

GO:0008171 "O-methyltransferase activity" evidence=IEA

TIGR_CMR|CBU_0924 CBU_0924 "O-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 87/206 (42%), Positives = 139/206 (67%)

Query:    68 VTPPLYDYILR-NVREPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRCIE 125
             +TP LY Y+L+ ++REP +L +LREET     +  MQ +P+QAQLLA+LV+++ A++ I+
Sbjct:     8 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVID 67

Query:   126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
             +G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct:    68 IGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 127

Query:   186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245
              LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD+      
Sbjct:   128 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 187

Query:   246 TISIRNFNKNLMEDERVSISMKEVQD 271
                IR FN+ + +DERV + +  + D
Sbjct:   188 NQLIRLFNQKVYKDERVDMILIPIGD 213

GO:0008171 "O-methyltransferase activity" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 98/233 (42%), Positives = 138/233 (59%)

Query:    52 VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
             + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct:    11 IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query:   109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct:    71 QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query:   169 VSHKVKIKHGLAADSLKALILN----GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 224
             V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E LLQL+RVGG 
Sbjct:   131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGH 190

Query:   225 IVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMKEVQD 271
             IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +    + D
Sbjct:   191 IVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIAD 243

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 88/209 (42%), Positives = 121/209 (57%)

Query:    72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
             LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct:    15 LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query:   129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
             +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct:    75 FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query:   189 LNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK-T 246
              N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW G VA+   +  +  
Sbjct:   135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPDSSTPEWR 194

Query:   247 ISIRN----FNKNLMEDERVSISMKEVQD 271
             I ++      NK L  D+RV IS   + D
Sbjct:   195 IEVKKATLELNKKLSADQRVQISQAALGD 223

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

UNIPROTKB|A4IFU3 COMTD1 "COMTD1 protein" [Bos taurus (taxid:9913)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/202 (37%), Positives = 122/202 (60%)

Query:    71 PLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ +++G +
Sbjct:    53 PLWQYLLSRSIREHPALRSLRLLTLEQPQGDSMMTREQAQLLANLARLIKAKKALDLGTF 112

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGYS+LA+AL LP +GC+V CE DA   E+ +  + +A   HK+ ++   A ++L  L+ 
Sbjct:   113 TGYSALALALALPPAGCVVTCEVDAGPPELGRPLWRQAEEEHKIDLRLKPALETLDELLA 172

Query:   190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISI 249
              GEA ++D A VDA+K     Y+E  LQL+R GG++ + +VL  G+V      D     +
Sbjct:   173 AGEAGTFDVAVVDADKENCTAYYERCLQLLRPGGVLAVLSVLCQGEVLQPKPQDKAAQCV 232

Query:   250 RNFNKNLMEDERVSISMKEVQD 271
             RN N+ ++ D RV IS+  + D
Sbjct:   233 RNLNERILRDARVHISLLPLGD 254

GO:0005739 "mitochondrion" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 87/228 (38%), Positives = 131/228 (57%)

Query:    57 DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
             D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct:     2 DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query:   112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct:    61 SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query:   172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
             K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E LL+L++VGGII  DN
Sbjct:   121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDN 177

Query:   230 VLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMKEVQD 271
              LW G +  Q  N+      A   ++  FNK L  D RV I+   + D
Sbjct:   178 TLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGD 224

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

DICTYBASE|DDB_G0275501 omt6 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 72/172 (41%), Positives = 110/172 (63%)

Query:   101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
             M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct:    51 MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHA 110

Query:   161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR 220
              K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+LIR
Sbjct:   111 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKLIR 170

Query:   221 VGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMKEVQD 271
              GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ S+  + D
Sbjct:   171 KGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKSLLPIAD 222

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1916406 Comtd1 "catechol-O-methyltransferase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 77/203 (37%), Positives = 125/203 (61%)

Query:    71 PLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ +++G +
Sbjct:    53 PLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIKAKKALDLGTF 112

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGYS+LA+AL LPE+G +V CE DA   ++ +  +++A V  K+ ++   A  +L  L+ 
Sbjct:   113 TGYSALALALALPEAGRVVTCEVDAEPPKLGRPMWKQAEVEQKIDLRLQPALQTLDELLA 172

Query:   190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTIS- 248
              GEA ++D A VDA+K     Y+E  LQL+R GG++ +  VLW G+V      + KT+  
Sbjct:   173 AGEAGTFDIAVVDADKENCTAYYERCLQLLRPGGVLAVLRVLWRGEVLQPQPRN-KTVEC 231

Query:   249 IRNFNKNLMEDERVSISMKEVQD 271
             +RN N+ ++ D RV IS+  + D
Sbjct:   232 VRNLNERILRDARVYISLLPLDD 254

GO:0005739 "mitochondrion" evidence=IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BIG7	CMTD1_MOUSE	2, ., 1, ., 1, ., -	0.3463	0.8345	0.8664	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
4th Layer	2.1.1.6	LOW CONFIDENCE prediction!
3rd Layer	2.1.1.33	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-145
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	6e-77
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-52
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	3e-47
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	4e-41
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	6e-16
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	9e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-06
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	4e-04
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	5e-04

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  408 bits (1049), Expect = e-145
 Identities = 188/281 (66%), Positives = 223/281 (79%), Gaps = 21/281 (7%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS------ 54
           M++ L  NR +F + +T  T+    +  +   L+           F+     +       
Sbjct: 1   MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLK-----------FSRRLIGNCSIAPAD 49

Query: 55  ----AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQL 110
               A+D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQL
Sbjct: 50  PVVVANDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQL 109

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           LAMLVQILGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVS
Sbjct: 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
           HKV +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL+RVGG+IV+DNV
Sbjct: 170 HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNV 229

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQD 271
           LWHG+VAD +VNDAKTISIRNFNK LM+D+RVSISM  + D
Sbjct: 230 LWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGD 270

Length = 278

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  231 bits (592), Expect = 6e-77
 Identities = 91/192 (47%), Positives = 130/192 (67%)

Query: 80  VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL 139
           VRE EIL++LRE TA +  S MQ+SP++ Q L+ML++++GA+R +E+GV+TGYS LA AL
Sbjct: 5   VREHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATAL 64

Query: 140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199
            LPE G + AC+ D  + E+   + ++AGV+ K+  + G A  +L+ L+ +     +DF 
Sbjct: 65  ALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVKDKPLGEFDFI 124

Query: 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMED 259
           FVDA+K  Y  Y+E LL+L++VGG+I IDN LW GKVA+      KT+ +R  NK L  D
Sbjct: 125 FVDADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKTVRVRELNKLLASD 184

Query: 260 ERVSISMKEVQD 271
           ERV ISM  V D
Sbjct: 185 ERVEISMLPVGD 196

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  170 bits (433), Expect = 1e-52
 Identities = 78/214 (36%), Positives = 116/214 (54%), Gaps = 9/214 (4%)

Query: 62  NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            +++ ++   LYDY+      EP  L    EE A   G  +   P+   LL +L ++ G 
Sbjct: 2   TQRMPNMDEDLYDYLEALIPGEPPALLAELEEFARENGVPIID-PETGALLRLLARLSGP 60

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL- 179
           +R +E+G   GYS+L +AL LP+ G L   ERD    E+A++    AGV  ++++  G  
Sbjct: 61  KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ 239
           A D L  L       S+D  F+DA+K  Y EY E  L L+R GG+IV DNVL+ G+VAD 
Sbjct: 121 ALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADP 176

Query: 240 MVNDAKTI--SIRNFNKNLMEDERVSISMKEVQD 271
            + DA+T    +R+FN  L+ED R    +  + D
Sbjct: 177 SIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGD 210

Length = 219

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  157 bits (398), Expect = 3e-47
 Identities = 82/198 (41%), Positives = 117/198 (59%), Gaps = 7/198 (3%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LRE T    G  S+M+V  D+   L+MLV+I+ A+  +E+GV+TGYS L  A
Sbjct: 28  REHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198
           L LPE G + A + D  + EV  ++ ++AGV HK+      A  +L  L+ N     +DF
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147

Query: 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA---DQMVNDAKTI--SIRNFN 253
           AFVDA+K  Y  + E LL+L++VGGII  DN LW G VA   D++    +    ++  FN
Sbjct: 148 AFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFN 207

Query: 254 KNLMEDERVSISMKEVQD 271
           K L  D RV IS   + D
Sbjct: 208 KLLASDPRVEISQISIGD 225

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  141 bits (357), Expect = 4e-41
 Identities = 85/213 (39%), Positives = 123/213 (57%), Gaps = 14/213 (6%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 88

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+     ++AGV+HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA--- 244
            +G+   ++DF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V      DA   
Sbjct: 149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAP--PDAPMR 206

Query: 245 KTIS-IRNF----NKNLMEDERVSISMKEVQDA 272
           K +   R+F    NK L  D R+ I M  V D 
Sbjct: 207 KYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Length = 247

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           +E+GVY+G S+L +A  L ++G   L + +        A     +AG++ +V++  G + 
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPG--AEAGANLRKAGLADRVRLLRGDSL 58

Query: 182 DSLKALILNGEASSYDFAFVDA--EKRMYQEYFELLLQLIRVGGIIVIDNV 230
           ++L  L       S D  F+D            EL L L+  GGIIV  ++
Sbjct: 59  EALARL----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +++G  TG  ++  +L++ E+G + A ++D +++ + ++  E+ GV + + +  G A + 
Sbjct: 45  LDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE- 103

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231
               IL      +D  F+       +E      ++I+ GG IVID +L
Sbjct: 104 ----ILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147

Length = 198

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           R +++G  TG  +LA+A        +   +    +LE+A+K    A ++  V++  G   
Sbjct: 1   RVLDLGCGTGALALALASGPGAR--VTGVDISPVALELARK-AAAALLADNVEVLKG--- 54

Query: 182 DSLKALILNGEASSYDFAFVD----AEKRMYQEYFELLLQLIRVGGIIVI 227
           D+ +      E  S+D    D            + E   +L++ GG++V+
Sbjct: 55  DAEELPPEADE--SFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+ + P  A  +   + I    R +E G  +G  +  +A  +   G +   E     
Sbjct: 73  RRTQI-IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDF 131

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ--EYFEL 214
            + A++     G+  +V +K G   +         +    D  F+D    +       E 
Sbjct: 132 AKTARENLSEFGLGDRVTLKLGDVREG-------IDEEDVDAVFLD----LPDPWNVLEH 180

Query: 215 LLQLIRVGGIIVI 227
           +   ++ GG++V+
Sbjct: 181 VSDALKPGGVVVV 193

Length = 256

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 124 IEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182
           +++G  TG  ++ +A + P  G  +   +     LE+A++  +   +  ++    G A D
Sbjct: 6   LDIGCGTGSLAIELARLFP--GARVTGVDLSPEMLELARENAKL-ALGPRITFVQGDAPD 62

Query: 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           +L  L        +D  F+        E  + L  L++ GG +V+
Sbjct: 63  ALDLL------EGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 107 QAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163
           Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+AK+ 
Sbjct: 65  QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124

Query: 164 YERAGVSHKV 173
             R G+ + +
Sbjct: 125 VRRLGIENVI 134

Length = 322

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 21/125 (16%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +++G  TGY +  +A  L     +V  +    ++E AK+  ++ G    V+   G   D 
Sbjct: 8   LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQG---DI 63

Query: 184 LKALILNGEASSYDFAFVDAEK-RMY--QEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
            +   L  E +S+D    +     +    +  E ++++++ GG++++ + +   ++   +
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPALL 123

Query: 241 VNDAK 245
            +  +
Sbjct: 124 EDLER 128

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 8/124 (6%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  L+ L ++       ++G  TG  ++  A ++P  G + A ER+  +L++ ++   R 
Sbjct: 9   ALTLSKL-RLRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRF 66

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           GVS+ V ++ G A ++ + L         D  FV     + QE  E + + +R GG IV+
Sbjct: 67  GVSNIVIVE-GDAPEAPEDL-----LPDPDAVFVGGSGGLLQEILEAVERRLRPGGRIVL 120

Query: 228 DNVL 231
           + + 
Sbjct: 121 NAIT 124

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PLN02476	278	O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.76
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.71
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.71
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.7
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.69
PRK04457	262	spermidine synthase; Provisional	99.69
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.68
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.68
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.68
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.67
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.66
PLN03075	296	nicotianamine synthase; Provisional	99.65
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.64
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.64
PRK07402	196	precorrin-6B methylase; Provisional	99.64
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.63
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.62
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.62
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.62
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.62
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.61
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.6
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.59
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.58
PLN02244	340	tocopherol O-methyltransferase	99.58
COG4123	248	Predicted O-methyltransferase [General function pr	99.58
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.58
PRK00811	283	spermidine synthase; Provisional	99.57
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.57
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.56
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.56
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.56
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.54
PRK11207	197	tellurite resistance protein TehB; Provisional	99.54
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.54
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.54
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.53
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.53
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.53
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.53
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.53
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.52
PRK04266	226	fibrillarin; Provisional	99.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.51
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.51
PRK01581	374	speE spermidine synthase; Validated	99.51
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.5
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.5
PRK08317	241	hypothetical protein; Provisional	99.49
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.49
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.49
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.48
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.48
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.48
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.48
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.48
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.48
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.48
PLN02366	308	spermidine synthase	99.48
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.46
PRK14968	188	putative methyltransferase; Provisional	99.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
PRK06922	677	hypothetical protein; Provisional	99.46
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.45
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.45
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.45
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.45
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.45
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.44
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.43
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.43
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.43
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.42
PLN02336	475	phosphoethanolamine N-methyltransferase	99.42
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.41
PRK14967	223	putative methyltransferase; Provisional	99.4
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.4
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.4
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.4
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.39
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.39
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.39
COG2890	280	HemK Methylase of polypeptide chain release factor	99.39
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.39
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.39
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.38
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.38
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.37
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.37
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.37
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.37
PLN02823	336	spermine synthase	99.36
PLN02490	340	MPBQ/MSBQ methyltransferase	99.35
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.35
KOG1271	227	consensus Methyltransferases [General function pre	99.35
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.34
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.34
PTZ00146	293	fibrillarin; Provisional	99.34
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.34
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.34
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.33
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.32
TIGR03438	301	probable methyltransferase. This model represents	99.32
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.31
KOG2904	328	consensus Predicted methyltransferase [General fun	99.31
PRK03612	521	spermidine synthase; Provisional	99.3
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.3
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.29
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.28
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.28
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.28
PLN02336	475	phosphoethanolamine N-methyltransferase	99.27
TIGR00438	188	rrmJ cell division protein FtsJ.	99.27
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.27
PRK06202	232	hypothetical protein; Provisional	99.27
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.27
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.25
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.24
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.24
KOG4300	252	consensus Predicted methyltransferase [General fun	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.23
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.23
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.23
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.21
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.21
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.21
PLN02672	1082	methionine S-methyltransferase	99.2
PRK05785	226	hypothetical protein; Provisional	99.18
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.18
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.17
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.17
PHA03412	241	putative methyltransferase; Provisional	99.16
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.15
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.15
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.14
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.12
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.11
PHA03411	279	putative methyltransferase; Provisional	99.09
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.08
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.07
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.06
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	99.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.05
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.05
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.05
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.03
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.02
COG2521	287	Predicted archaeal methyltransferase [General func	99.02
KOG2899	288	consensus Predicted methyltransferase [General fun	99.01
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.01
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.01
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.0
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.97
COG2520	341	Predicted methyltransferase [General function pred	98.97
PRK00536	262	speE spermidine synthase; Provisional	98.97
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.95
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.95
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.94
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.93
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.93
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.92
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.92
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.9
KOG2361	264	consensus Predicted methyltransferase [General fun	98.88
KOG3010	261	consensus Methyltransferase [General function pred	98.87
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.87
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.87
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.85
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.85
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.85
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.79
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.79
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.79
PRK04148	134	hypothetical protein; Provisional	98.77
KOG2730	263	consensus Methylase [General function prediction o	98.76
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.73
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.72
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.66
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.64
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.64
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.64
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.62
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.61
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.54
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.52
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.51
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.51
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.51
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.5
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.49
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.46
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.43
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.42
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.41
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.41
PRK10742	250	putative methyltransferase; Provisional	98.41
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.39
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.39
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.34
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.33
COG4076	252	Predicted RNA methylase [General function predicti	98.33
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.33
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.29
PF13679	141	Methyltransf_32: Methyltransferase domain	98.29
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.26
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.26
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.24
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.24
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.23
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.2
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.2
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.19
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.15
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.1
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.09
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.06
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.05
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.01
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.93
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.92
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.91
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.88
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.86
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.83
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.83
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.82
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.79
COG3897	218	Predicted methyltransferase [General function pred	97.77
KOG3115	249	consensus Methyltransferase-like protein [General	97.75
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.75
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.72
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.69
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.67
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.63
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.63
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.62
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.62
KOG2940	325	consensus Predicted methyltransferase [General fun	97.57
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.55
COG0286	489	HsdM Type I restriction-modification system methyl	97.48
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.42
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	97.38
PHA01634	156	hypothetical protein	97.31
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.27
COG4798	238	Predicted methyltransferase [General function pred	97.21
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.19
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.18
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.16
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.05
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.98
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.97
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.94
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.91
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.89
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.79
KOG1331	293	consensus Predicted methyltransferase [General fun	96.54
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.53
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.51
COG4301	321	Uncharacterized conserved protein [Function unknow	96.34
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.31
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.29
KOG1227	351	consensus Putative methyltransferase [General func	96.29
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.18
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.16
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.02
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.0
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.76
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.75
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.74
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.65
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.63
PRK13699	227	putative methylase; Provisional	95.61
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.55
PRK11524	284	putative methyltransferase; Provisional	95.49
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.31
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.3
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.17
PRK11524	284	putative methyltransferase; Provisional	95.12
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.04
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.01
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.96
PRK13699	227	putative methylase; Provisional	94.77
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.71
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.67
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.5
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.45
COG1565	370	Uncharacterized conserved protein [Function unknow	94.41
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.4
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.31
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	94.29
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.18
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.15
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.1
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	94.06
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.01
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.92
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.89
PLN02740	381	Alcohol dehydrogenase-like	93.89
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.85
PTZ00357	1072	methyltransferase; Provisional	93.85
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	93.73
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.7
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	93.57
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.56
PLN02827	378	Alcohol dehydrogenase-like	93.55
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.54
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.47
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.43
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.41
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.38
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.3
COG3315	297	O-Methyltransferase involved in polyketide biosynt	93.27
KOG2912	419	consensus Predicted DNA methylase [Function unknow	93.25
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.21
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.2
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.17
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.86
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	92.82
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.6
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.55
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.22
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.18
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.07
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.89
KOG2078	495	consensus tRNA modification enzyme [RNA processing	91.85
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	91.69
KOG2360	413	consensus Proliferation-associated nucleolar prote	91.57
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.56
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	91.53
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.51
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.48
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	91.46
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	91.4
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.32
COG1568	354	Predicted methyltransferases [General function pre	91.29
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	91.19
KOG3924	419	consensus Putative protein methyltransferase invol	91.11
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	90.91
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.9
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.69
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.64
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	90.59
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	90.56
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.4
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	90.38
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	90.38
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	90.26
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	90.24
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.18
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	90.17
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.07
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.96
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.79
PRK06940	275	short chain dehydrogenase; Provisional	89.6
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	89.59
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.57
PRK08114	395	cystathionine beta-lyase; Provisional	89.42
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.38
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.25
KOG2782	303	consensus Putative SAM dependent methyltransferase	89.21
PLN02586	360	probable cinnamyl alcohol dehydrogenase	89.21
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	89.13
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	89.09
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	88.97
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	88.97
COG2961	279	ComJ Protein involved in catabolism of external DN	88.91
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.67
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	88.64
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	88.58
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	88.55
PRK07417	279	arogenate dehydrogenase; Reviewed	88.17
PRK08655	437	prephenate dehydrogenase; Provisional	88.04
PRK09496	453	trkA potassium transporter peripheral membrane com	87.8
PRK09496	453	trkA potassium transporter peripheral membrane com	87.55
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.55
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	87.5
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	87.5
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	87.44
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.3
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.26
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.18
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	87.15
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	87.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	86.97
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	86.97
PRK10669	558	putative cation:proton antiport protein; Provision	86.72
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	86.58
PRK10083	339	putative oxidoreductase; Provisional	86.51
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.45
PRK08324	681	short chain dehydrogenase; Validated	86.25
TIGR00497	501	hsdM type I restriction system adenine methylase (	86.12
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	86.08
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	86.06
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	86.05
PLN02256	304	arogenate dehydrogenase	86.05
PLN02494	477	adenosylhomocysteinase	85.96
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	85.9
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	85.76
KOG2920	282	consensus Predicted methyltransferase [General fun	85.61
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	85.61
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	85.47
PF03269	177	DUF268: Caenorhabditis protein of unknown function	85.47
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	85.27
PLN02353	473	probable UDP-glucose 6-dehydrogenase	85.13
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	85.1
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.04
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	84.99
PLN02178	375	cinnamyl-alcohol dehydrogenase	84.99
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	84.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	84.95
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	84.89
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	84.89
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	84.87
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	84.86
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	84.65
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	84.54
PLN02514	357	cinnamyl-alcohol dehydrogenase	84.45
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	84.42
PRK08507	275	prephenate dehydrogenase; Validated	84.24
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.16
COG4017	254	Uncharacterized protein conserved in archaea [Func	83.92
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	83.92
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	83.87
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	83.79
PRK09028	394	cystathionine beta-lyase; Provisional	83.78
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	83.63
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	83.6
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	83.49
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.39
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	83.36
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	83.27
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.17
COG4121	252	Uncharacterized conserved protein [Function unknow	82.96
PRK08818	370	prephenate dehydrogenase; Provisional	82.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	82.87
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	82.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	82.76
COG0569	225	TrkA K+ transport systems, NAD-binding component [	82.66
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.63
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	82.51
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	82.36
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	82.28
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	82.26
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	82.24
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	82.11
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	82.04
PRK06914	280	short chain dehydrogenase; Provisional	82.01
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	82.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	81.97
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.82
PLN02702	364	L-idonate 5-dehydrogenase	81.7
PRK06153	393	hypothetical protein; Provisional	81.51
PTZ00354	334	alcohol dehydrogenase; Provisional	81.51
PRK09242	257	tropinone reductase; Provisional	81.49
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	81.44
PRK07109	334	short chain dehydrogenase; Provisional	81.33
PRK05854	313	short chain dehydrogenase; Provisional	81.27
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	81.23
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.2
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	81.16
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	81.1
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	81.07
PRK05225	487	ketol-acid reductoisomerase; Validated	80.89
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.85
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	80.81
PRK08328	231	hypothetical protein; Provisional	80.74
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	80.56
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	80.4
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	80.35
PRK15116	268	sulfur acceptor protein CsdL; Provisional	80.34
PRK07582	366	cystathionine gamma-lyase; Validated	80.34
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	80.22
PRK08265	261	short chain dehydrogenase; Provisional	80.21
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.12

>PLN02476 O-methyltransferase

Probab=100.00  E-value=1.5e-43  Score=304.52  Aligned_cols=269  Identities=70%  Similarity=1.053  Sum_probs=231.4

Q ss_pred             CcccchhhhhhheeeccchhhhhhccchhhHh--hhcCCCcccccCCCCCcccccccccccccccccCCCChhHHHHHHh
Q 024097            1 MASSLVANRFAFVLLKTEKTVAKFHSFPLSER--LRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILR   78 (272)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~   78 (272)
                      |++++..+||-++.-.+..+.-..+.++--+.  +.+.+|.. .+  ..++....++.+++|..++.....+.+++|+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~~~   77 (278)
T PLN02476          1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSRRLIGN-CS--IAPADPVVVANDDKYGNKQVISLTPRLYDYVLS   77 (278)
T ss_pred             CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHHHhhcC-CC--CCCCCceEEecchhhcccCcccchHHHHHHHHh
Confidence            67788888988665555433333333333333  33333222 12  233457888999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097           79 NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE  158 (272)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~  158 (272)
                      ..++++.+.++++++.....+.|.+++.+++++..++...++++|||||||+|++++++++.++++++|+++|.+++..+
T Consensus        78 ~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~  157 (278)
T PLN02476         78 NVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE  157 (278)
T ss_pred             cCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence            88889999999999988767788999999999999999999999999999999999999999988899999999999999


Q ss_pred             HHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 024097          159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  238 (272)
Q Consensus       159 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~  238 (272)
                      .|+++++++|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.+
T Consensus       158 ~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d  237 (278)
T PLN02476        158 VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVAD  237 (278)
T ss_pred             HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccC
Confidence            99999999999999999999999998876544334689999999999999999999999999999999999999999999


Q ss_pred             CcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          239 QMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      +...+..+.++|+||+++.+||+++++++|+|||
T Consensus       238 ~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDG  271 (278)
T PLN02476        238 PLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDG  271 (278)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCe
Confidence            8777778899999999999999999999999998

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=2.3e-39  Score=268.90  Aligned_cols=193  Identities=42%  Similarity=0.735  Sum_probs=177.6

Q ss_pred             cCChHHHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097           80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE  158 (272)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~  158 (272)
                      ..+++.+.++++.+.... .+.|.+++.++++|..++...++++||||||++|++++++++.++++++|+++|++++..+
T Consensus         5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~   84 (205)
T PF01596_consen    5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE   84 (205)
T ss_dssp             TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred             cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence            457899999999987765 5567899999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 024097          159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  238 (272)
Q Consensus       159 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~  238 (272)
                      .|+++++++|+.++|+++.||+.+.++.+...+..++||+||+|+++..|..+++.+.++|+|||+|++||++|.|.|.+
T Consensus        85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~  164 (205)
T PF01596_consen   85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD  164 (205)
T ss_dssp             HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred             HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence            99999999999999999999999999888665445689999999999999999999999999999999999999999999


Q ss_pred             CcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          239 QMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |..++..+.++++||+++.+||+|+++++|+|||
T Consensus       165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdG  198 (205)
T PF01596_consen  165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDG  198 (205)
T ss_dssp             TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTE
T ss_pred             ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCe
Confidence            9777888889999999999999999999999998

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-37  Score=255.60  Aligned_cols=213  Identities=50%  Similarity=0.826  Sum_probs=198.2

Q ss_pred             ccccccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHH
Q 024097           60 YSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSS  134 (272)
Q Consensus        60 ~~~~~~~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~  134 (272)
                      +..++....++.+++|+...   .+|++.+.++++.+...  +.+.|.++++.++|+..+++..+++++||||..||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySa   88 (237)
T KOG1663|consen    9 VPDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSA   88 (237)
T ss_pred             CcchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHH
Confidence            33444677788889998776   67899999999999777  57899999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097          135 LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL  214 (272)
Q Consensus       135 ~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~  214 (272)
                      +.+|.++|++|+|+++|++++..+.+.+..+.+|..++|+++++++.+.++++...++.++||++|+|+++..|..++++
T Consensus        89 L~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~  168 (237)
T KOG1663|consen   89 LAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYER  168 (237)
T ss_pred             HHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888888999999999999999999999


Q ss_pred             HHccCCCCcEEEEeCCCCCCcccCCcCCCH-hhHHHH---HHHHHhhhCCCeEEEEeecCCC
Q 024097          215 LLQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       215 ~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      +.+++|+||+|++||++|+|.|++|+.... .+..++   +||++|..||+++.+++|+|||
T Consensus       169 ~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG  230 (237)
T KOG1663|consen  169 LLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG  230 (237)
T ss_pred             HHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence            999999999999999999999988876544 788899   9999999999999999999998

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=6.2e-37  Score=260.65  Aligned_cols=206  Identities=39%  Similarity=0.638  Sum_probs=184.2

Q ss_pred             CCChhHHHHHHhc---cCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 024097           67 SVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (272)
Q Consensus        67 ~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~  143 (272)
                      ...+.+++|+.+.   .++++.+.++++.+.....+.|.+++.++++|..++...++++|||||+++|++++++++.+++
T Consensus        24 ~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~  103 (247)
T PLN02589         24 LQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPE  103 (247)
T ss_pred             cCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCC
Confidence            3468899999763   3578899999999887766678889999999999999999999999999999999999999988


Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg  222 (272)
                      +++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+...+ ..++||+||+|+++..|..+++.+.++|+||
T Consensus       104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G  183 (247)
T PLN02589        104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG  183 (247)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC
Confidence            899999999999999999999999999999999999999998875432 1368999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCCcCCC-Hh-----hHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          223 GIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       223 G~lvi~d~~~~g~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |+|++||++|+|.|.++...+ ..     ..++|+||+.+.+||+++++++|+|||
T Consensus       184 Gviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDG  239 (247)
T PLN02589        184 GVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG  239 (247)
T ss_pred             eEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCc
Confidence            999999999999998874322 11     236899999999999999999999998

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=3.8e-36  Score=249.47  Aligned_cols=201  Identities=38%  Similarity=0.649  Sum_probs=175.6

Q ss_pred             CCCChhHHHHHHhccC--ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 024097           66 ISVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (272)
Q Consensus        66 ~~~~~~l~~y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~  143 (272)
                      ..+.+.|.+|+.+...  .+..+.++.+..... +.++ +.++++++|..++...++++|||||++.|++++|+|..++.
T Consensus         6 ~~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~-~~pi-~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~   83 (219)
T COG4122           6 PNMDEDLYDYLEALIPGEPPALLAELEEFAREN-GVPI-IDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD   83 (219)
T ss_pred             ccchHHHHHHHHhhcccCCchHHHHHHHHhHhc-CCCC-CChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC
Confidence            3466789999999864  345556665555443 3333 33999999999999999999999999999999999999997


Q ss_pred             CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg  222 (272)
                      ++++|+||+++++++.|+++++++|+.++++++. +|+.+.+...    ..++||+||+|+++..|+++++.+.++|+||
T Consensus        84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~yp~~le~~~~lLr~G  159 (219)
T COG4122          84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPG  159 (219)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhCHHHHHHHHHHhCCC
Confidence            8899999999999999999999999999999999 6999887752    1589999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCCcCCCHhhH--HHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          223 GIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       223 G~lvi~d~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |++++||++|+|.+.++..++..+.  .+++|++++.++|+++++++|+|||
T Consensus       160 Gliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG  211 (219)
T COG4122         160 GLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG  211 (219)
T ss_pred             cEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence            9999999999999998865555444  5999999999999999999999998

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=1e-35  Score=253.20  Aligned_cols=205  Identities=41%  Similarity=0.646  Sum_probs=182.5

Q ss_pred             CChhHHHHHHhc---cCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097           68 VTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (272)
Q Consensus        68 ~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~  142 (272)
                      ..+.+++|+.+.   .++++.+.++++++...  ..+.|.+.+.+++++..++...++++|||||||+|+++++++..++
T Consensus        12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~   91 (234)
T PLN02781         12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP   91 (234)
T ss_pred             CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence            356899999764   46889999999998765  2356788999999999999999999999999999999999999988


Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg  222 (272)
                      ++++|+++|+++++++.|+++++++++.++++++.+|+.+.++.+...++.++||+||+|+.+..+..+++.+.++|+||
T Consensus        92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G  171 (234)
T PLN02781         92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG  171 (234)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC
Confidence            78999999999999999999999999998999999999998877654333468999999999999999999999999999


Q ss_pred             cEEEEeCCCCCCcccCCcCCC-----HhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          223 GIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       223 G~lvi~d~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |+|++||++|.|.+.++....     ....++++||+++.+||+++++++|+|||
T Consensus       172 G~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG  226 (234)
T PLN02781        172 GIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDG  226 (234)
T ss_pred             eEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCc
Confidence            999999999999998875321     23578999999999999999999999998

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.76  E-value=3.6e-18  Score=128.66  Aligned_cols=104  Identities=22%  Similarity=0.393  Sum_probs=87.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+.++++..+ +.+|+++|+++++++.|++++...+..++++++++|+ ......     .++||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence            467999999999999999999655 7899999999999999999997788888999999999 322222     468999


Q ss_pred             EEEcC-Ccc------chHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDA-EKR------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~-~~~------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++.. ...      ....+++.+.+.|+|||+++++.
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99988 322      24567999999999999999874

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=9.5e-17  Score=135.52  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      .+.+.......++.+|||+|||||-.++.+++..+ .++|+++|+|+.|++.|++.....+..+ ++|+++|+.+. |. 
T Consensus        40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf-  115 (238)
T COG2226          40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PF-  115 (238)
T ss_pred             HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CC-
Confidence            33344444444789999999999999999999998 8999999999999999999999888876 99999999764 32 


Q ss_pred             HhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          188 ILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                          ++++||+|.+...   ..+....|+++.|+|||||.+++-+...+
T Consensus       116 ----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         116 ----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             ----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence                2789999998765   55788999999999999999999877654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.71  E-value=8.1e-16  Score=123.74  Aligned_cols=120  Identities=25%  Similarity=0.352  Sum_probs=103.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..++.-.+....+...++.+++|||||||..++.++.. .+.++|+++|.++++++..++|.++.+. ++++++.|++.+
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~   95 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE   95 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence            44555555556667778899999999999999999954 4589999999999999999999999995 579999999999


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .++.+      .+||.||+.+. ......++.+...|||||.||++-+.
T Consensus        96 ~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          96 ALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             hhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            88753      37999999998 88899999999999999999998554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.70  E-value=6.5e-16  Score=128.48  Aligned_cols=113  Identities=21%  Similarity=0.421  Sum_probs=96.5

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..+...++.+|||+|||+|..++.+++..++.++|+++|+++++++.++++++..++.++++++.+|+.+.++..     
T Consensus        34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----
Confidence            344556778999999999999999998776568999999999999999999999886668999999998765543     


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+.||.||+.........+++.+.++|+|||.++++.+
T Consensus       109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            46899999987767778899999999999999998644

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.70  E-value=5e-16  Score=118.74  Aligned_cols=111  Identities=24%  Similarity=0.383  Sum_probs=92.4

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++++..+.. +++++.+|+.+..+..   
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~---   85 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS---   85 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh---
Confidence            33344445667999999999999999999876 589999999999999999999888765 5899999876533322   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        .++||.|++.........+++.+.+.|+|||.++++
T Consensus        86 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        86 --LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             --cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence              368999999887667778999999999999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.69  E-value=1.3e-16  Score=135.66  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +..++...++.+|||+|||||..+..+++..++.++|+++|+|++|++.|++++...+.. +++++++|+.+. +..   
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~---  113 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP---  113 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S----
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC---
Confidence            333445667889999999999999999998877889999999999999999999988776 799999999774 321   


Q ss_pred             CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                        +++||.|++...   ..+....+++++++|||||.+++-+...+
T Consensus       114 --d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen  114 --DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             --TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred             --CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence              689999998765   44678899999999999999998766544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK04457 spermidine synthase; Provisional

Probab=99.69  E-value=1.7e-15  Score=131.11  Aligned_cols=118  Identities=19%  Similarity=0.244  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      +....++..+....++++|||||||+|..+.++++..| +.+++++|+++++++.|++++...+..++++++.+|+.+.+
T Consensus        52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l  130 (262)
T PRK04457         52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI  130 (262)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence            34444444444445678999999999999999999876 78999999999999999999865555568999999999877


Q ss_pred             HHHHhCCCCCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          185 KALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...     .++||+|++|....       ...++++.+.+.|+|||+++++
T Consensus       131 ~~~-----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        131 AVH-----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             HhC-----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            653     46899999986422       1368999999999999999996

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.68  E-value=4.8e-16  Score=130.92  Aligned_cols=151  Identities=21%  Similarity=0.320  Sum_probs=109.5

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHcC-----CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097           68 VTPPLYDYILRNVREPEILRQLREETAGM-----RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (272)
Q Consensus        68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~  142 (272)
                      .++++.+.+.+..++.-+...........     ........|.....+..++...++.+|||||||+|+.+..+++..+
T Consensus        21 ~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~  100 (215)
T TIGR00080        21 KSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG  100 (215)
T ss_pred             CCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC
Confidence            45667777776555432222111111111     1112234566666676777778889999999999999999999876


Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg  222 (272)
                      +.++|+++|+++++++.|+++++..++. +++++.+|+.+..+.      ..+||+|+++......   .+.+.+.|+||
T Consensus       101 ~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~g  170 (215)
T TIGR00080       101 RDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEG  170 (215)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcC
Confidence            5688999999999999999999998884 699999999764332      3689999998765543   45677889999


Q ss_pred             cEEEEe
Q 024097          223 GIIVID  228 (272)
Q Consensus       223 G~lvi~  228 (272)
                      |++++.
T Consensus       171 G~lv~~  176 (215)
T TIGR00080       171 GILVMP  176 (215)
T ss_pred             cEEEEE
Confidence            999985

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.68  E-value=2.4e-15  Score=123.97  Aligned_cols=118  Identities=25%  Similarity=0.319  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+.....+...+...++.+|||||||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++.+|+..
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~   92 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI   92 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence            3444445554555556788999999999999999998865 689999999999999999999888775 59999998743


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .   +     .++||+|+++........+++.+.+.|+|||++++..+
T Consensus        93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             h---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            1   1     36899999987766778889999999999999999654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.68  E-value=1.6e-15  Score=124.20  Aligned_cols=102  Identities=23%  Similarity=0.388  Sum_probs=87.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.++.++. +++++++|+.+...       .++|
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-------~~~f  110 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-------EEQF  110 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-------cCCc
Confidence            34578999999999999999987654 689999999999999999999988876 59999999977421       4789


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|++++ ..++..+++.+.++|+|||.+++.
T Consensus       111 D~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       111 DVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             cEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 566778899999999999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.68  E-value=6.4e-16  Score=129.20  Aligned_cols=118  Identities=22%  Similarity=0.300  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      .+.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.|+++++..+..++++++.+|+.+.
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            34444555555555677899999999999999999988666899999999999999999999888877899999999764


Q ss_pred             HHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++.      ..+||.|+++......   .+.+.+.|+|||.|++...
T Consensus       137 ~~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        137 LEK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             Ccc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEEc
Confidence            432      3689999998775443   3577899999999998643

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.67  E-value=8.5e-16  Score=129.08  Aligned_cols=118  Identities=24%  Similarity=0.351  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ....|.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.++++++..+.. +++++.+|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence            3567888888888888888999999999999999999998776789999999999999999999988875 699999998


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+..+.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       137 ~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCc------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence            654321      4789999998765544   34667789999999985

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.66  E-value=1.9e-15  Score=124.19  Aligned_cols=101  Identities=20%  Similarity=0.367  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..++.+++..+ +++|+++|+++++++.|+++.+..++.+ ++++++|+.+...       .++||+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl  115 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV  115 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence            378999999999999999998765 7899999999999999999999999865 9999999976321       368999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++.. ......+++.+.++|+|||++++-.
T Consensus       116 V~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        116 VTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            99876 3567789999999999999999863

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.66  E-value=8.9e-16  Score=122.25  Aligned_cols=109  Identities=17%  Similarity=0.310  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++.+.++++++|+|+++++++.|++.++..+.. +++|+++|+.+ ++...    .++||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence            35679999999999999999966555889999999999999999999999987 79999999988 43210    26899


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|++...   ..+....++.+.++|++||++++.+..+
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~  113 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH  113 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred             EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence            9999865   3445678999999999999999987763

...

>PLN03075 nicotianamine synthase; Provisional

Probab=99.65  E-value=1.3e-15  Score=132.26  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccC-HHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-hCCCCCEEEEEcChh
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA  181 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G-~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~  181 (272)
                      .+..++++..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++.++. .++.++++|..+|+.
T Consensus       109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            44555556555554 8899999999955 55666665555588999999999999999999964 788889999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcC----CccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~----~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +..+.      .+.||+||++.    .+.....+++++.+.|+|||++++-.
T Consensus       188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            74322      36899999985    24778899999999999999999976

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.64  E-value=2.3e-15  Score=122.20  Aligned_cols=112  Identities=21%  Similarity=0.355  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ...+|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ ++++.+|..+..+ 
T Consensus        19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~-   95 (170)
T PF05175_consen   19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP-   95 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred             HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence            334666666666888999999999999999999876 6689999999999999999999999887 9999999877433 


Q ss_pred             HHhCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEE
Q 024097          187 LILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                            .++||+|+++.+..        ....+++.+.++|+|||.+++
T Consensus        96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                  47999999987622        256788889999999999865

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=2.4e-15  Score=126.13  Aligned_cols=119  Identities=18%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.|....++.......++.+|+|.|+|+|..+.+|+..+.+.|+|+++|+.+++++.|++|++..++.+++++..+|..
T Consensus        77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~  156 (256)
T COG2519          77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR  156 (256)
T ss_pred             eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence            57788889999999999999999999999999999999988889999999999999999999999999988999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +...       ++.||.||+|.+.++  .+++.+.+.|+|||.+++-.
T Consensus       157 ~~~~-------~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         157 EGID-------EEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             cccc-------ccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEc
Confidence            7554       459999999976444  58999999999999999853

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.64  E-value=8.9e-15  Score=121.44  Aligned_cols=121  Identities=23%  Similarity=0.366  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+....++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+|+.
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~  100 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAP  100 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchH
Confidence            45566666666666767788999999999999999987655 689999999999999999999988875 6999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.++.+     ...+|.++++.. .....+++.+.++|+|||.+++...
T Consensus       101 ~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        101 ECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            654433     245688888754 3457889999999999999999754

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=3.7e-15  Score=128.17  Aligned_cols=114  Identities=16%  Similarity=0.224  Sum_probs=99.4

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      .+...+...++++|||||||.|..++++|+..  +.+|+|+++|+++.+.+++.++..|+..+++++..|..+.      
T Consensus        63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------  134 (283)
T COG2230          63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------  134 (283)
T ss_pred             HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------
Confidence            34444566789999999999999999999987  5899999999999999999999999998999999888764      


Q ss_pred             CCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                         .++||-|++-+.     .+.+..||+.+.++|+|||.++++.+....
T Consensus       135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence               366999997653     567999999999999999999999887554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.62  E-value=3.8e-15  Score=124.24  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+++....+...+..  ++.+|||||||+|..+..+++..+ ..+|+++|+++++++.+++++...++ .+++++++|+.
T Consensus        25 ~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~  100 (202)
T PRK00121         25 RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAV  100 (202)
T ss_pred             hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHH
Confidence            455666666666655  668999999999999999998876 67999999999999999999988777 46999999994


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.++...   .+++||.|++.....           ....+++.+.++|+|||++++.
T Consensus       101 ~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        101 EVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            4444211   146899999864311           1467899999999999999984

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.62  E-value=6.2e-15  Score=127.31  Aligned_cols=103  Identities=21%  Similarity=0.316  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++.+..++.++++++++|+.+..+..     +++||
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD  114 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVD  114 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCC
Confidence            35679999999999999999985   46999999999999999999998888778999999998754332     47899


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|++...   ..+...+++++.++|||||++++.
T Consensus       115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            9998765   345667899999999999999874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.62  E-value=5.5e-15  Score=128.00  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=90.6

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hCCCCCEEEEEcChhHHHHHHHh
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      ...+...++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++...  .....+++++++|+.+. +.   
T Consensus        66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~---  141 (261)
T PLN02233         66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF---  141 (261)
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC---
Confidence            3344556778999999999999999998876568999999999999999876542  22234699999998653 21   


Q ss_pred             CCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                        ++++||+|++...   ..+...+++++.++|||||.+++.+...
T Consensus       142 --~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        142 --DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             --CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence              2578999998653   4457789999999999999999987654

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.62  E-value=2.9e-15  Score=130.11  Aligned_cols=114  Identities=16%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||||||.|..+.++++..  +++|+|+.+|++..+.+++.+++.|+.+++++..+|..+.       
T Consensus        54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-------  124 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-------  124 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred             HHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------
Confidence            3334456788999999999999999999986  5899999999999999999999999999999999998764       


Q ss_pred             CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       191 ~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                        +.+||.|++-..     ..++..+++.+.++|+|||.++++.+.....
T Consensus       125 --~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~  172 (273)
T PF02353_consen  125 --PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP  172 (273)
T ss_dssp             ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred             --CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence              358999987543     4567899999999999999999987775543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.61  E-value=9.9e-15  Score=124.07  Aligned_cols=115  Identities=18%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +.+...+...++.+|||+|||+|..+..+++..++.++|+++|+++++++.++++++..+. ++++++.+|+.+..  + 
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-  110 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-  110 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-
Confidence            3334444556678999999999999999999876678999999999999999999887776 46999999986532  1 


Q ss_pred             hCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          189 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                         ..++||+|++...   ..++..+++++.++|+|||.+++.+.
T Consensus       111 ---~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       111 ---DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             ---CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence               1478999998654   34567889999999999999987654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7e-15  Score=120.84  Aligned_cols=117  Identities=26%  Similarity=0.398  Sum_probs=99.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .+....|.....+..++...++.+|||||||+||.+..+++...   +|+++|+.++..+.|+++++..|..+ |.++++
T Consensus        52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~g  127 (209)
T COG2518          52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN-VTVRHG  127 (209)
T ss_pred             CceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEEC
Confidence            34466788888888999999999999999999999999999754   99999999999999999999999975 999999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |...-.+.      ..+||.|++.+.....++   .+.+.|++||++++-
T Consensus       128 DG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         128 DGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            99875543      489999999887555433   345678999999985

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.59  E-value=2.6e-14  Score=121.73  Aligned_cols=122  Identities=21%  Similarity=0.276  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.|....++...+...++.+|||.|+|+|.++.+|++.+.+.|+|+++|..++.++.|+++++..++.+++++.+.|..
T Consensus        23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            57889999999999999999999999999999999999998899999999999999999999999999989999999996


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccC-CCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lL-kpgG~lvi~  228 (272)
                      +....   ...+..+|.||+|.+.++.  .+..+.+.| ++||.|++-
T Consensus       103 ~~g~~---~~~~~~~DavfLDlp~Pw~--~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen  103 EEGFD---EELESDFDAVFLDLPDPWE--AIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             CG--S---TT-TTSEEEEEEESSSGGG--GHHHHHHHE-EEEEEEEEE
T ss_pred             ccccc---ccccCcccEEEEeCCCHHH--HHHHHHHHHhcCCceEEEE
Confidence            42210   0113689999999876653  688888999 899999874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.58  E-value=1e-14  Score=121.70  Aligned_cols=117  Identities=23%  Similarity=0.377  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...|.....+..++...++.+|||||||+||.+..++..+++.++|+++|+++..++.|+++++..+.. +++++++|..
T Consensus        55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~  133 (209)
T PF01135_consen   55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS  133 (209)
T ss_dssp             E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred             chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence            456777777778888889999999999999999999998877789999999999999999999999887 6999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+.      ..+||.|++.+.....+   ..+.+.|++||++|+-
T Consensus       134 ~g~~~------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  134 EGWPE------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GTTGG------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             hcccc------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence            75443      37899999988766543   3466779999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.58  E-value=1.5e-14  Score=109.71  Aligned_cols=102  Identities=22%  Similarity=0.400  Sum_probs=85.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +.+|||+|||+|..++.+++..  ..+++++|+++..++.+++++...++.++++++++|..+..+.+    ..++||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEE
Confidence            3589999999999999999885  47999999999999999999999998889999999998765332    25899999


Q ss_pred             EEcCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097          200 FVDAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       200 ~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +.+.+..           .+..+++.+.++|+|||++++
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            9987622           246789999999999999986

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.58  E-value=2.1e-14  Score=128.95  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..  +++|+++|+++.+++.++++.+..++.++++++.+|+.+.. .     .+++||
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~-----~~~~FD  188 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-F-----EDGQFD  188 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-C-----CCCCcc
Confidence            456899999999999999999876  47999999999999999999988888778999999987631 1     257999


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|++...   ..+...+++++.++|||||.+++.+..
T Consensus       189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9998544   345678999999999999999997654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.58  E-value=2e-14  Score=121.54  Aligned_cols=116  Identities=19%  Similarity=0.294  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      .+-+|..++......+|||+|||+|..++.++++.+ ..++++||+++++.+.|+++++.+++.+|++++++|..+..+.
T Consensus        32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            456777777777789999999999999999999876 4899999999999999999999999999999999999887665


Q ss_pred             HHhCCCCCceEEEEEcCC---------------------ccchHHHHHHHHccCCCCcEEEE
Q 024097          187 LILNGEASSYDFAFVDAE---------------------KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~---------------------~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..    ..+||+|+++.+                     .....++++.+.++|||||.+.+
T Consensus       111 ~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         111 LV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             cc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            41    357999999865                     01245678888899999999987

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.58  E-value=4.4e-14  Score=123.73  Aligned_cols=118  Identities=17%  Similarity=0.245  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ..+++..++...+.    ..++.+|||+|||+|..++.+++..+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            45566666655443    23457999999999999999999876 68999999999999999999999998778999999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+.+.++       .++||+|+++.+.                            ..+..++..+.++|+|||.++++
T Consensus       180 D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       180 DLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             chhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9865332       3579999997541                            01345678888999999999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00811 spermidine synthase; Provisional

Probab=99.57  E-value=1.2e-13  Score=120.98  Aligned_cols=105  Identities=20%  Similarity=0.289  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C--CCCEEEEEcChhHHHHHHHhCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .++++||+||||.|..+..+++.. ...+|+++|+++++++.|++.+...+  .  ..+++++.+|+.+.+...     .
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  148 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E  148 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence            467899999999999999998753 25699999999999999999887532  1  458999999998877542     4


Q ss_pred             CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            7899999986422       1367889999999999999974

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.57  E-value=4.1e-14  Score=118.85  Aligned_cols=114  Identities=23%  Similarity=0.334  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...|.....+..++...++.+|||||||+|+.+..+++..   ++++++|+++++++.+++++++.++.+ ++++.+|+.
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            4677777787777777888999999999999999888764   489999999999999999999888764 999999986


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            53321      3689999998765543   45678899999999985

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.56  E-value=5e-14  Score=121.12  Aligned_cols=106  Identities=12%  Similarity=0.215  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++.+|||||||+|..+..+++.+ .++++|+++|+|+.|++.|++++...+...+++++++|+.+..        ...+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  126 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA  126 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence            356799999999999999998854 3478999999999999999999988887778999999986532        2458


Q ss_pred             EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|++...     ......+++++.+.|+|||.+++.+..
T Consensus       127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            99887533     223467899999999999999998744

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.56  E-value=5.9e-14  Score=116.35  Aligned_cols=105  Identities=16%  Similarity=0.250  Sum_probs=87.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ...+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++. +++++++|+.+......   ..+++|.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~---~~~~~d~   90 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF---PDGSLSK   90 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC---CCCceeE
Confidence            456999999999999999999876 789999999999999999999888886 79999999987654332   1358999


Q ss_pred             EEEcCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+++.+...           ...+++.+.++|||||.|++.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            998754211           257899999999999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.56  E-value=2.1e-14  Score=119.61  Aligned_cols=121  Identities=17%  Similarity=0.305  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .+.+....++...+..   ..+.+|||||||.|..+..+|+.   +.+|+|+|+++++++.|+....+.++.  +++.+.
T Consensus        39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~  113 (243)
T COG2227          39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQA  113 (243)
T ss_pred             eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhh
Confidence            3444445555555543   57889999999999999999985   589999999999999999998887774  778877


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ++.+....      .++||+|++-..   .++...++..|.+++||||.+++..+..+
T Consensus       114 ~~edl~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         114 TVEDLASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             hHHHHHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            77665432      379999997654   44567799999999999999999877633

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.56  E-value=7.1e-14  Score=123.60  Aligned_cols=118  Identities=17%  Similarity=0.240  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ..+.+..++...+..    .++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|+++++..++.++++++++
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~  191 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES  191 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            445566665554431    1236899999999999999999876 68999999999999999999999988778999999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+.+.++       .++||+|+++.+.                            ..+..+++.+.++|+|||.++++
T Consensus       192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9866432       3579999987531                            11356678888999999999985

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.55  E-value=3.8e-14  Score=125.66  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +++|+|+|+++++++.|+++.+..+...+++++++++.+... .     .++||+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~-----~~~FD~  201 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-E-----GRKFDA  201 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-c-----cCCCCE
Confidence            4569999999999999998863   579999999999999999887665555579999999866422 1     478999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |++...   ..+...+++.+.++|||||.+++..+.
T Consensus       202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            998654   345678999999999999999998654

>TIGR00740 methyltransferase, putative

Probab=99.54  E-value=1.2e-13  Score=118.16  Aligned_cols=106  Identities=8%  Similarity=0.085  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++.+|||||||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+..        ...+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d  124 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS  124 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence            567999999999999999998753 478999999999999999999987766667999999997642        24588


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|++...     ..+...+++++.+.|+|||.+++.+..+
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            8876543     2234678999999999999999987654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=5.9e-14  Score=116.63  Aligned_cols=100  Identities=13%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.++++.+..++. ++++..+|..+..  +     .++|
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~f   96 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGEY   96 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCCc
Confidence            346689999999999999999975   469999999999999999998887775 4888888876531  1     3679


Q ss_pred             EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+|++...     ......+++.+.++|+|||++++
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            99997644     22467889999999999998554

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=6.1e-14  Score=122.22  Aligned_cols=112  Identities=16%  Similarity=0.299  Sum_probs=92.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..++.++|+++|+++++++.|+++....+.. +++++.+|+.+. +.     .+++
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~~  146 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADNS  146 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCCc
Confidence            4557889999999999999888887765679999999999999999999888875 699999988552 21     1468


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|+++..   ..+....++++.++|||||.+++.++...+
T Consensus       147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            999997754   335567899999999999999998876554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.54  E-value=1.1e-13  Score=128.76  Aligned_cols=125  Identities=22%  Similarity=0.288  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......++...+...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+.
T Consensus       233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~  311 (444)
T PRK14902        233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR  311 (444)
T ss_pred             EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence            3445556677777777778899999999999999999987557899999999999999999999999875 999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +....+     .++||+|++|++...                         ...+++.+.++|||||.++...+..
T Consensus       312 ~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        312 KVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             cccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            654333     368999999875210                         2357888899999999999765543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.54  E-value=4e-14  Score=119.77  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=87.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      ++|||||||+|..+..+++..+ +.+++++|+++++++.++++++..++.++++++.+|..+..  .     .++||+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~-----~~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F-----PDTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C-----CCCCCEee
Confidence            4799999999999999999875 67999999999999999999999899889999999885431  1     36899998


Q ss_pred             EcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +...   ..+...+++.+.++|+|||.+++.+..
T Consensus        73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            6432   345678999999999999999998765

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=1.8e-13  Score=126.72  Aligned_cols=125  Identities=22%  Similarity=0.248  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      ....+++..++...++.+|||+|||+|+.+..+++..++.++|+++|+++.+++.+++++++.|+.+ ++++.+|+.+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~  316 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL  316 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence            3445556666666778999999999999999999987667899999999999999999999999874 999999987643


Q ss_pred             HHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ....  ...++||.|++|++...                         ...+++.+.++|||||.|+...+..
T Consensus       317 ~~~~--~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        317 ELKP--QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             cccc--cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            2110  01368999999865210                         3467888899999999999876543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.53  E-value=3.1e-13  Score=124.83  Aligned_cols=125  Identities=19%  Similarity=0.299  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.....+++..++...++.+|||+|||+|+.|..+++.++++++|+++|+++.+++.+++++++.|+. +++++++|+.
T Consensus       220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~  298 (431)
T PRK14903        220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE  298 (431)
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            334455566666777778899999999999999999998876789999999999999999999999986 4999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +.....     .++||.|++|++..                         .+.+++..+.++|||||+++...+.+
T Consensus       299 ~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        299 RLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            643222     36899999987521                         12456888899999999999876653

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.53  E-value=5.2e-14  Score=104.21  Aligned_cols=93  Identities=23%  Similarity=0.330  Sum_probs=74.3

Q ss_pred             EEEEcCccCHHHHHHHHHCCC--CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      |||+|||+|..+..+++.++.  ..+++++|+++++++.++++....+.  +++++++|+.+.. ..     .++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~-----~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS-----DGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH-----SSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc-----CCCeeEEE
Confidence            799999999999999998732  37999999999999999999987666  6999999998753 33     57999999


Q ss_pred             EcCC------ccchHHHHHHHHccCCCCc
Q 024097          201 VDAE------KRMYQEYFELLLQLIRVGG  223 (272)
Q Consensus       201 ~d~~------~~~~~~~l~~~~~lLkpgG  223 (272)
                      +...      ......+++++.++|+|||
T Consensus        73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            8432      3346788999999999998

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.53  E-value=1.2e-13  Score=124.79  Aligned_cols=112  Identities=10%  Similarity=0.120  Sum_probs=88.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC--CCEEEEEcChhHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKA  186 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~  186 (272)
                      +++...+......+|||+|||+|..++.+++..| ..+|+++|+|+.+++.|+++++.++..  .+++++.+|..+..+ 
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~-  295 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE-  295 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC-
Confidence            4444444444456999999999999999999876 789999999999999999999877653  368999888865321 


Q ss_pred             HHhCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097          187 LILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                            .++||+|+++.+..        ....++..+.++|+|||.+.+.
T Consensus       296 ------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        296 ------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             ------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence                  35899999986632        1346788889999999999885

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.53  E-value=1e-13  Score=115.02  Aligned_cols=103  Identities=18%  Similarity=0.238  Sum_probs=80.6

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++.  +++..+|.... + +     +
T Consensus        25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~   92 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----N   92 (195)
T ss_pred             HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----c
Confidence            334456789999999999999999974   579999999999999999988877764  77777776432 1 1     3


Q ss_pred             CceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++...     ......+++.+.++|+|||++++-
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            57999987543     234568899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.52  E-value=7.2e-14  Score=120.66  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=80.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..+ +++|+|+|+|+.+++.|++.        +++++++|+.+..+       .++
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~   89 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPD   89 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCC
Confidence            345678999999999999999999875 68999999999999998752        37889999865421       468


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|++...   ..+....++++.+.|||||.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            999998764   345678899999999999999985

>PRK04266 fibrillarin; Provisional

Probab=99.52  E-value=5.3e-13  Score=112.91  Aligned_cols=109  Identities=12%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~  192 (272)
                      +...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++.+..   .++.++.+|+.+..  ..+     
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-----  138 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-----  138 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence            5566788999999999999999999886 689999999999999887766542   35899999986421  111     


Q ss_pred             CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          193 ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      .++||+|+++....+ ....++++.+.|||||.+++. +.|.
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~~  179 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKAR  179 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eecc
Confidence            356999998765432 234588999999999999996 5553

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=1.2e-13  Score=119.36  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=82.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..+ +++|+++|+++.+++.+++++      .+++++.+|+.+..+       .++
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~   93 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA   93 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence            445678999999999999999999876 679999999999999998764      258899999865422       368


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|++...   ..+...+++++.+.|+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999998765   335678899999999999999985

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=3.4e-14  Score=103.09  Aligned_cols=92  Identities=22%  Similarity=0.320  Sum_probs=74.0

Q ss_pred             EEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (272)
Q Consensus       124 LEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~  203 (272)
                      ||+|||+|..+..+++. + ..+|+++|+++++++.++++...    .++.+..+|+.+. +.     .+++||+|++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~-----~~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PF-----PDNSFDVVFSNS   68 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-cc-----cccccccccccc
Confidence            89999999999999997 3 68999999999999999987643    3466999998765 21     158999999875


Q ss_pred             C---ccchHHHHHHHHccCCCCcEEEE
Q 024097          204 E---KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       204 ~---~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .   ..+...+++++.++|||||.++|
T Consensus        69 ~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   69 VLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            4   35678899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK01581 speE spermidine synthase; Validated

Probab=99.51  E-value=4.5e-13  Score=119.11  Aligned_cols=106  Identities=15%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHH-----HHhCC-CCCEEEEEcChhHHHHHHHhC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ..++++||+||||+|+.+..+++. ++..+|+++|+++++++.|++..     .+..+ .+|++++.+|+.+.+...   
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---  223 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---  223 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence            457889999999999988888875 33579999999999999999732     11122 468999999999987653   


Q ss_pred             CCCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        .++||+||+|...+.        ..++++.+.+.|+|||++++.
T Consensus       224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             --CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence              468999999964221        256899999999999999886

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.50  E-value=3.5e-13  Score=118.21  Aligned_cols=118  Identities=18%  Similarity=0.332  Sum_probs=92.5

Q ss_pred             CHHHHHHHHHHHhh---cCC-CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          104 SPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       104 ~~~~~~~l~~l~~~---~~~-~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .+++..++...+..   .++ .+|||+|||+|..++.++...+ +.+|+++|+++++++.|+++++..++.++++++.+|
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            45555555554432   223 6999999999999999999876 679999999999999999999998887779999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+.++       ..+||+|+++.+.                            ..+..+++.+.++|+|||++++.-
T Consensus       174 ~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       174 LFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             hhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            876332       2489999987430                            024567788889999999999863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.50  E-value=7e-13  Score=108.45  Aligned_cols=108  Identities=12%  Similarity=0.238  Sum_probs=86.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .++...+...++++|||+|||+|..+..+++..   .+|+++|+++++++.++++++..+.  +++++.+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            555565666777899999999999999999853   3899999999999999999987765  4889999986532    


Q ss_pred             hCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEeC
Q 024097          189 LNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                          .++||+|+++.+..                        ....+++.+.++|+|||.+++-.
T Consensus        80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                35899999875421                        03567888999999999998854

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.50  E-value=1.2e-12  Score=108.44  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ........++..+....++.+|||+|||+|..++.++...  ..+|+++|+++++++.+++|++..+.. +++++.+|+.
T Consensus        36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~  112 (199)
T PRK10909         36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNAL  112 (199)
T ss_pred             CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHH
Confidence            3334444455555444567899999999999999755443  369999999999999999999998875 6999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC-ccc-hHHHHHHHHc--cCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAE-KRM-YQEYFELLLQ--LIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~-~~~-~~~~l~~~~~--lLkpgG~lvi~d  229 (272)
                      +.++..     .++||+||+|.+ ... ....++.+.+  +|+|+|++++..
T Consensus       113 ~~l~~~-----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        113 SFLAQP-----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             HHHhhc-----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            765432     357999999998 333 4455555543  589999999874

>PRK08317 hypothetical protein; Provisional

Probab=99.49  E-value=7e-13  Score=112.59  Aligned_cols=118  Identities=21%  Similarity=0.281  Sum_probs=92.5

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++..  ....+++++.+|+.+..  +   
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~---   83 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F---   83 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C---
Confidence            3344555677899999999999999999987557899999999999999988732  33456899998875421  1   


Q ss_pred             CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                       ..++||+|++...   ..+...+++++.++|+|||.+++.+..|....
T Consensus        84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  131 (241)
T PRK08317         84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV  131 (241)
T ss_pred             -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee
Confidence             1478999998754   34577899999999999999999887665543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.49  E-value=4.1e-13  Score=119.03  Aligned_cols=116  Identities=24%  Similarity=0.353  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..+.. ++.++++|+.+
T Consensus        64 ~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~  142 (322)
T PRK13943         64 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY  142 (322)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence            34555555555555667789999999999999999998765578999999999999999999988874 69999999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       143 ~~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        143 GVPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             cccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            4432      3679999998764443   34567889999998874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.49  E-value=5e-13  Score=117.38  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++..+++.+++.+..++....   .     .++||
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD  227 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD  227 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence            36789999999999999888764 3 4689999999999999999999988877788877763221   1     46899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+++........++..+.++|+|||.+++..+.
T Consensus       228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            9999877666778899999999999999997654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=5e-13  Score=124.23  Aligned_cols=123  Identities=18%  Similarity=0.236  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......+...++...++.+|||+|||+|..+..+++.++..++|+++|+++++++.+++++++.|+. +++++.+|+.
T Consensus       233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~  311 (445)
T PRK14904        233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR  311 (445)
T ss_pred             EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence            334445555556666667889999999999999999988765689999999999999999999999986 5999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +..+       .++||.|++|.+..                         ....++..+.++|+|||++++..+..
T Consensus       312 ~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        312 SFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             cccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            6432       46899999986421                         12357888899999999999976543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.48  E-value=3e-13  Score=117.29  Aligned_cols=109  Identities=11%  Similarity=0.171  Sum_probs=86.5

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .+...++.+|||||||+|..+..+++..  +++|+++|+++.+++.|++++..   .++++++.+|+.+. +.     .+
T Consensus        47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~-----~~  115 (263)
T PTZ00098         47 DIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DF-----PE  115 (263)
T ss_pred             hCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CC-----CC
Confidence            3455677899999999999999998764  47999999999999999987643   35799999998642 11     14


Q ss_pred             CceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          194 SSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       194 ~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ++||+|++...     ..+...+++++.++|||||.+++.+....
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~  160 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD  160 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence            78999997432     23567899999999999999999877543

>TIGR00417 speE spermidine synthase

Probab=99.48  E-value=1.6e-12  Score=113.23  Aligned_cols=105  Identities=17%  Similarity=0.248  Sum_probs=85.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+  . ..+++++.+|+.+.+...     .+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~  144 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN  144 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence            4567999999999999998887643 5689999999999999999886542  1 347899999998877653     47


Q ss_pred             ceEEEEEcCCcc-----c--hHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~-----~--~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++|....     .  ..++++.+.++|+|||++++.
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            999999987521     1  467889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.48  E-value=3.7e-13  Score=119.29  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=93.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +.+...+...+..+|||||||+|..+..+++..| +.+++++|. +.+++.++++++..++.++++++.+|+.+..    
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----  212 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----  212 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence            3344444455678999999999999999999987 789999998 7899999999999999889999999987521    


Q ss_pred             hCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          189 LNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                          ...+|+|++...     ......+++++.+.|+|||.+++.+..+..
T Consensus       213 ----~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       213 ----YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             ----CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence                134699876543     223456899999999999999999887654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.48  E-value=4.5e-13  Score=119.30  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=85.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .+....+++|||||||+|+.+..++...+  .+|+|+|+++.++..++...+..+...+++++.+++.+...       .
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~  187 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------L  187 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------c
Confidence            33345678999999999999999998643  47999999999887654433333334479999998865421       3


Q ss_pred             CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      ++||+|++.+.   ..+...+++++.+.|+|||.++++.....+.
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~  232 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGD  232 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence            78999998654   3456788999999999999999987655543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.48  E-value=7.3e-13  Score=114.92  Aligned_cols=120  Identities=17%  Similarity=0.238  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      .....+...++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.++. +++++.+|+....
T Consensus        57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~  135 (264)
T TIGR00446        57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFG  135 (264)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhh
Confidence            334444445556667889999999999999999998876689999999999999999999999886 5999999986542


Q ss_pred             HHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          185 KALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..      .+.||.|++|.+..                         ....+++.+.++|||||+|+.....
T Consensus       136 ~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       136 AA------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             hh------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            21      35699999987521                         1245788889999999999976544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.48  E-value=2e-12  Score=117.92  Aligned_cols=109  Identities=19%  Similarity=0.297  Sum_probs=88.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++++|||+|||+|.+++..+.  +...+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+...  .++
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~~  293 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GEK  293 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CCC
Confidence            45678999999999999887664  22459999999999999999999999986 47999999999887654321  358


Q ss_pred             eEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||+||+|.+.            ..+..++..+.++|+|||+|+...
T Consensus       294 fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            9999999762            235566777889999999999754

>PLN02366 spermidine synthase

Probab=99.48  E-value=2e-12  Score=114.06  Aligned_cols=107  Identities=23%  Similarity=0.380  Sum_probs=87.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ..++++||+||||.|..+..++++ ++..+|+.+|+++++++.+++.+...+  + .+|++++.+|+.+.+...    ..
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~----~~  163 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA----PE  163 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc----cC
Confidence            356889999999999999999876 435699999999999999999886532  2 358999999998877543    13


Q ss_pred             CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...+       ...++++.+.+.|+|||+++..
T Consensus       164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            6899999987532       1457899999999999999875

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.46  E-value=1.8e-12  Score=119.87  Aligned_cols=122  Identities=24%  Similarity=0.327  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++++.|+.  ++++.+|+.+
T Consensus       228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~  304 (427)
T PRK10901        228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD  304 (427)
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence            3445555666677777889999999999999999999875 479999999999999999999988874  7899999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .....    ..++||.|++|++...                         ...+++.+.++|||||.+++..+.
T Consensus       305 ~~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        305 PAQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             chhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            32211    1367999999875211                         235788889999999999987654

>PRK14968 putative methyltransferase; Provisional

Probab=99.46  E-value=1.6e-12  Score=106.66  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=86.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-EEEEEcChhHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL  187 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~  187 (272)
                      .++...+...++++|||+|||+|..+..+++.   +.+++++|+++++++.+++++...++.++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            34444444467789999999999999999986   47999999999999999999988877544 8899998766332  


Q ss_pred             HhCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          188 ILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                           ..+||+|+.+.+..                        ....+++.+.++|+|||.+++.
T Consensus        88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                 34899999875411                        1355789999999999988774

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=1.3e-13  Score=112.56  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=86.3

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .+...++.+|.|+|||+|.+|..+++++| ++.++|+|-|++|++.|++..      .+++|..+|..++-+       +
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-------~   90 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-------E   90 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-------C
Confidence            34456778999999999999999999998 899999999999999997754      248999999987654       4


Q ss_pred             CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++|++|.++.   ..+....|..+...|.|||+|.+.
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            68999998875   455677899999999999999986

>PRK06922 hypothetical protein; Provisional

Probab=99.46  E-value=1.9e-12  Score=122.49  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=87.8

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .+....++.+|||||||+|..+..+++..+ +++|+|+|+++.+++.|+++....+  .++.++++|+.+....+    +
T Consensus       412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----e  484 (677)
T PRK06922        412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----E  484 (677)
T ss_pred             HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----C
Confidence            344555788999999999999999998876 7899999999999999998875544  35889999987632112    2


Q ss_pred             CCceEEEEEcCC----------------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          193 ASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       193 ~~~fDlV~~d~~----------------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +++||+|++...                ......+++++.++|||||.+++.+..
T Consensus       485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            578999987532                124567899999999999999997643

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.45  E-value=1.5e-12  Score=117.34  Aligned_cols=104  Identities=21%  Similarity=0.209  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..+..+||||||+|..+..+|+..| +..++|+|+++.+++.+.+++...++. ++.++++|+......+    .++++|
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~----~~~s~D  194 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL----PSNSVE  194 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC----CCCcee
Confidence            3456899999999999999999986 789999999999999999999888886 4999999997755433    257999


Q ss_pred             EEEEcCCccc---------hHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRM---------YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~---------~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .|++..+.++         ...+++.+.++|+|||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            9998754221         25789999999999999987

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.45  E-value=9.3e-14  Score=103.79  Aligned_cols=102  Identities=30%  Similarity=0.489  Sum_probs=51.5

Q ss_pred             EEEcCccCHHHHHHHHHCCCCc--EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       124 LEiG~G~G~~~~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      ||||+..|.++.++++.+++..  +++++|..+. .+.+++.+++.++.++++++.++..+.++.+.    .++||++++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence            7999999999999999887554  7999999996 44455566667777789999999999887763    279999999


Q ss_pred             cCCc--cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          202 DAEK--RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       202 d~~~--~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+.+  +.....++.+.+.|+|||+|++||+
T Consensus        76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            9874  5567789999999999999999985

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.45  E-value=1.3e-12  Score=112.59  Aligned_cols=109  Identities=22%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097          107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (272)
Q Consensus       107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  185 (272)
                      +...+..+.. ..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++.+..++      
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------  177 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------  177 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------
Confidence            3333444333 246789999999999999887764 3 347999999999999999999988875445543221      


Q ss_pred             HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                              .+||+|+++........+++.+.++|+|||.+++..+.
T Consensus       178 --------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 --------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             --------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                    26999998876666777889999999999999997554

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.45  E-value=2e-12  Score=111.02  Aligned_cols=115  Identities=23%  Similarity=0.402  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          105 PDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       105 ~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +....++..++...  .+.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++. +++++++|+.+
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~  148 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE  148 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence            34445555444432  346999999999999999999876 679999999999999999999888875 69999999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCcc-----------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~-----------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+       .++||+|+++.+..                             .+..+++.+.++|+|||.+++.
T Consensus       149 ~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       149 PLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             cCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            322       47899999865411                             0235678889999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.45  E-value=1e-12  Score=123.55  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=83.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|++++...++.++++++.+|+.+.++       .++||+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI  210 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI  210 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence            46899999999999999998876 689999999999999999999988887789999999865332       3589999


Q ss_pred             EEcCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~-----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            986530                             11344567778899999999985

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.44  E-value=9.9e-13  Score=121.62  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ......++...+...++.+|||+|||+|+.+..+++.++ .++|+++|+++++++.+++++++.|+..++++..+|....
T Consensus       223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~  301 (426)
T TIGR00563       223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP  301 (426)
T ss_pred             ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence            345566666677777889999999999999999999887 7899999999999999999999998864455576776432


Q ss_pred             HHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ....    ..++||.|++|++...                         ...++..+.++|||||.+++..+.+.
T Consensus       302 ~~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       302 SQWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             cccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            1100    1368999999864111                         35688889999999999999866543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=1e-12  Score=115.41  Aligned_cols=98  Identities=17%  Similarity=0.261  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.++++.+..++  ++++...|..+..  +     +++||
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~fD  186 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEYD  186 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCcc
Confidence            45679999999999999999974   57999999999999999999988777  4888888875421  1     47899


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++...     ......+++.+.++|+|||++++
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            9987643     23567889999999999999665

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=117.10  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=81.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++.  .+++.+|..+.   .     .++||
T Consensus       195 ~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~-----~~~fD  263 (342)
T PRK09489        195 HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I-----KGRFD  263 (342)
T ss_pred             cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c-----CCCcc
Confidence            3456899999999999999999866 679999999999999999999988864  56777777542   1     47899


Q ss_pred             EEEEcCCcc--------chHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|+++.+.+        ....++..+.++|+|||.+++
T Consensus       264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            999987532        246788999999999999976

>TIGR00452 methyltransferase, putative

Probab=99.43  E-value=1.4e-12  Score=115.29  Aligned_cols=110  Identities=14%  Similarity=0.130  Sum_probs=82.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++++|||||||+|+.+..++...+  .+|+|+|+|+.++..++..-+..+...++.+..+++.+...       ..+|
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F  189 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF  189 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence            35678999999999999988887532  47999999999987654332222333468888887755321       3589


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      |+||+.+.   ..+...+++++.+.|+|||.|++......|.
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~  231 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGD  231 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence            99998764   3456788999999999999999987665543

Known examples to date are restricted to the proteobacteria.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.2e-12  Score=113.67  Aligned_cols=104  Identities=19%  Similarity=0.297  Sum_probs=83.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++|||+|||+|..++..++. + ..+++|+|++|.+++.|++|.+.+++...++....+..+...       .++||+
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-------~~~~Dv  232 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-------NGPFDV  232 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc-------cCcccE
Confidence            7899999999999999998875 3 467999999999999999999999887533333333333221       369999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+.+--.+-...+...+.++|+|||++++..++
T Consensus       233 IVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         233 IVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             EEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            998876556667888899999999999998765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.43  E-value=2.3e-12  Score=125.74  Aligned_cols=109  Identities=21%  Similarity=0.284  Sum_probs=91.0

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++|||+|||+|.+++++++. + ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+.+..+     .
T Consensus       534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----~  606 (702)
T PRK11783        534 GQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----R  606 (702)
T ss_pred             HHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----C
Confidence            33456889999999999999999974 2 347999999999999999999999986 68999999998877654     4


Q ss_pred             CceEEEEEcCCc--------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~--------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++||+||+|.+.              ..+..++..+.++|+|||++++...
T Consensus       607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            689999999762              1356678888899999999988654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.43  E-value=2e-12  Score=109.99  Aligned_cols=110  Identities=17%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.++.+|+.+...      +.++
T Consensus        48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~  121 (239)
T PRK00216         48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNS  121 (239)
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCC
Confidence            3446689999999999999999998764689999999999999999998776666679999999866321      1468


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ||+|++...   ..+...+++.+.++|+|||.+++-+..
T Consensus       122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            999987643   445778899999999999999876543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.42  E-value=5e-12  Score=114.15  Aligned_cols=115  Identities=23%  Similarity=0.344  Sum_probs=96.9

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      +.....+++||++-|.||.+++..|..   ++ +||+||.|...++.|++|++.+|+. .++.++++|+.+.+...... 
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~-  287 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR-  287 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence            334446899999999999999998874   44 9999999999999999999999985 57899999999998877543 


Q ss_pred             CCCceEEEEEcCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          192 EASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       192 ~~~~fDlV~~d~~------------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                       ..+||+||+|++            ..++...+..+.++|+|||++++.+....
T Consensus       288 -g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         288 -GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             -CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence             359999999986            23467788888999999999999766544

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.42  E-value=2.7e-12  Score=107.13  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+ +.+++|+|+|+++++.|++++.      ++.+.++|+.+  +.     .+++|
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~--~~-----~~~sf  106 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD--PF-----KDNFF  106 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC--CC-----CCCCE
Confidence            44667999999999999999998765 6799999999999999987641      36778888765  21     15799


Q ss_pred             EEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       197 DlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      |+|++....     .....+++++.+++  ++++++.+...+..+
T Consensus       107 D~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~  149 (204)
T TIGR03587       107 DLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPV  149 (204)
T ss_pred             EEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCce
Confidence            999986642     23567788888886  568888777655443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.42  E-value=1.5e-12  Score=122.18  Aligned_cols=108  Identities=14%  Similarity=0.207  Sum_probs=87.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..  +.+|+|+|+|+++++.|+++..  +...++++..+|+.+..  +    .+++
T Consensus       263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~----~~~~  332 (475)
T PLN02336        263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y----PDNS  332 (475)
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C----CCCC
Confidence            34567899999999999999999875  4699999999999999998764  44557999999986532  1    1468


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ||+|++...   ..+...+++++.++|+|||.+++.+....
T Consensus       333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  373 (475)
T PLN02336        333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS  373 (475)
T ss_pred             EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            999998654   34567899999999999999999876543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=5.1e-14  Score=103.77  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=62.9

Q ss_pred             EEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (272)
Q Consensus       124 LEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~  203 (272)
                      ||||||+|..+..+++.++ ..+++++|+|+.+++.+++++...+.. .......+..+.....    ..++||+|++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD----PPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc----cccccceehhhh
Confidence            7999999999999999985 789999999999999999888876643 2444444343332211    125999999765


Q ss_pred             C---ccchHHHHHHHHccCCCCcEE
Q 024097          204 E---KRMYQEYFELLLQLIRVGGII  225 (272)
Q Consensus       204 ~---~~~~~~~l~~~~~lLkpgG~l  225 (272)
                      .   ..+...+++.+.++|+|||+|
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            4   356778999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14967 putative methyltransferase; Provisional

Probab=99.40  E-value=6e-12  Score=106.56  Aligned_cols=100  Identities=18%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++..+.  +++++.+|+.+.++       .++||
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD  103 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD  103 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence            45679999999999999998874 3 35999999999999999999988776  48899998866432       46899


Q ss_pred             EEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+++.+..                        .+..+++.+.++|+|||.+++-
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999985311                        1345678889999999999973

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.40  E-value=3.6e-12  Score=114.09  Aligned_cols=117  Identities=20%  Similarity=0.280  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+..+..+..+....++.+|||+|||+|..++.++..   +.+++|+|+++.+++.+++|++..++.+ +++..+|+.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~  240 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT  240 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence            566777777777777778889999999999998886653   5799999999999999999999999876 899999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +. +..     .++||+|++|.+.            ..+..+++.+.+.|+|||.+++-
T Consensus       241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            63 211     4689999998651            11577899999999999998874

This family is found exclusively in the Archaea.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.40  E-value=1.8e-11  Score=100.92  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=90.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .+...+.....+.+|||++||+|..++.++.+..  .+|+++|.++.+++.+++|++..+..++++++.+|+.+.+..+.
T Consensus        39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~  116 (189)
T TIGR00095        39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA  116 (189)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh
Confidence            3334333345678999999999999999998632  48999999999999999999999987789999999987765432


Q ss_pred             hCCCCCceEEEEEcCCcc--chHHHHHHHH--ccCCCCcEEEEeCC
Q 024097          189 LNGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVIDNV  230 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~--~~~~~l~~~~--~lLkpgG~lvi~d~  230 (272)
                      .  ....||+||.|.+..  .+...++.+.  .+|+++|++++..-
T Consensus       117 ~--~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       117 K--KPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             c--cCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            1  123589999998743  3455566554  57999999998643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.40  E-value=2e-12  Score=111.35  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (272)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  185 (272)
                      ..+..+...+...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++..      ...++.+|+.+. +
T Consensus        29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~   98 (251)
T PRK10258         29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P   98 (251)
T ss_pred             HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c
Confidence            34444444444445689999999999999888763   5799999999999999987642      246788888553 2


Q ss_pred             HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .     .+++||+|++...   ..+....+.++.++|+|||.+++....
T Consensus        99 ~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258         99 L-----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            1     1468999998754   345778899999999999999987543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.39  E-value=5.1e-13  Score=112.24  Aligned_cols=102  Identities=16%  Similarity=0.209  Sum_probs=79.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-----CEEEEEcChhHHHHHHHhCCCCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +++|||+|||+|..+..||+.   ++.|+|+|+++++++.|++........+     ++++...++.+.         .+
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~~  157 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------TG  157 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------cc
Confidence            478999999999999999986   5799999999999999999843333322     355565555432         46


Q ss_pred             ceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       195 ~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +||.|++.-.   ..+...+++.+.++|||||.+++..+...
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence            7999998654   34567889999999999999999877643

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.39  E-value=5.5e-12  Score=114.33  Aligned_cols=119  Identities=18%  Similarity=0.278  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ...+++..++..+... .++.+|||+|||+|..++.+++..+ +.+|+++|+|+++++.|++|++..+.  +++++++|.
T Consensus       233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl  309 (423)
T PRK14966        233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW  309 (423)
T ss_pred             CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence            3456666777766543 3457999999999999999998765 68999999999999999999987764  699999998


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+....     ..++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.
T Consensus       310 ~e~~l~-----~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        310 FDTDMP-----SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             hccccc-----cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            653110     13579999997651                            01335566667899999998874

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.39  E-value=1.6e-12  Score=105.64  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...+-.++||+|||.|.+|..|+..+   .+++++|+++.+++.|++++.  +.. +|++++++..+..+       .++
T Consensus        40 p~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~~~dvp~~~P-------~~~  106 (201)
T PF05401_consen   40 PRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLP-HVEWIQADVPEFWP-------EGR  106 (201)
T ss_dssp             TTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-S-SEEEEES-TTT----------SS-
T ss_pred             CccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCC-CeEEEECcCCCCCC-------CCC
Confidence            33344689999999999999999875   489999999999999999884  443 69999999977654       589


Q ss_pred             eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ||+|++...      ......++..+...|+|||.+|+-..
T Consensus       107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            999998743      23456788999999999999999543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=3.5e-12  Score=111.28  Aligned_cols=117  Identities=19%  Similarity=0.387  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHH-hhcC-CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLV-QILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~-~~~~-~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ...+++..++..+. .... ..+|||||||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+|
T Consensus        91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d  168 (280)
T COG2890          91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSD  168 (280)
T ss_pred             ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence            44567777777643 1112 22799999999999999999987 68999999999999999999999998 567777777


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCC---cc-------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~---~~-------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.+        .++||+|+++.+   ..                         -+..++..+...|+|||.+++.
T Consensus       169 lf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le  237 (280)
T COG2890         169 LFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE  237 (280)
T ss_pred             ccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence            66543        358999998764   11                         1345677778999999999986

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.39  E-value=3.9e-12  Score=108.11  Aligned_cols=102  Identities=21%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+.+|||||||+|..+..+++..+ ..+++++|+++++++.+++.+.     .++.++.+|..+...      .+++||+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~------~~~~fD~  101 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL------EDSSFDL  101 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC------CCCceeE
Confidence            457999999999999999999876 6789999999999998887653     368899998865321      1478999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      |++...   ..+...+++.+.++|+|||.+++.....
T Consensus       102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       102 IVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            998764   3356788999999999999999975443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.39  E-value=4.1e-12  Score=104.15  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=81.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +...++.++||+|||.|..+++||+.   +..|+++|+|+..++.+++..+..++.  ++....|..+...       ++
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~   93 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE   93 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence            45557889999999999999999985   679999999999999999888887775  8999888765322       46


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .||+|++...     .+..+.+++.+...++|||++++...
T Consensus        94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            8999986432     44567789999999999999988543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.38  E-value=7.8e-12  Score=107.65  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +.+|||+|||+|..++.+++..+ +.+|+++|+|+.+++.|++|++.++    ++++++|+.+.++...    .++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence            45899999999999999998876 5799999999999999999997755    4789999876543211    2579999


Q ss_pred             EEcCCcc-----------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~~-----------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++|.+..                             -+..+++.+.++|+|||.+++.
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9986511                             0235667777999999999986

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.38  E-value=5.2e-12  Score=114.98  Aligned_cols=104  Identities=17%  Similarity=0.244  Sum_probs=83.4

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +...++.+|||||||+|..+..+++..  +.+|+++|+|+++++.|+++.+  ++  .+++..+|..+.         ++
T Consensus       163 l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~  227 (383)
T PRK11705        163 LQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NG  227 (383)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CC
Confidence            344577899999999999999999875  4799999999999999999874  33  378888887542         36


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +||.|++...     ...+..+++.+.++|||||.+++..+..+
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~  271 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN  271 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence            8999986543     33457889999999999999999866433

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=8.1e-12  Score=108.87  Aligned_cols=115  Identities=19%  Similarity=0.378  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          105 PDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       105 ~~~~~~l~~l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      +.+..++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++.+|..
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~  168 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF  168 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence            34444444443   334677999999999999999999876 6899999999999999999987 344457999999985


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~-----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+       .++||+|+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       169 ~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        169 EPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            5321       3689999986531                             11355677788999999999984

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.38  E-value=2.8e-12  Score=112.19  Aligned_cols=114  Identities=21%  Similarity=0.368  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          106 DQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       106 ~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      .+.-.+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+.  ...+..
T Consensus       147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~  222 (295)
T PF06325_consen  147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV  222 (295)
T ss_dssp             HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc
Confidence            333334444333 45689999999999999988874 4 458999999999999999999999998877663  111111


Q ss_pred             HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                              .++||+|+.+-...-.......+.++|+|||.+++..++
T Consensus       223 --------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  223 --------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             --------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             --------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence                    379999998877666677778888999999999998665

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5e-12  Score=109.20  Aligned_cols=109  Identities=19%  Similarity=0.256  Sum_probs=87.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      ++|...+......+|||+|||.|..++.+++..| ..+++.+|+|..+++.+++|++.++..+. .+...|..+..    
T Consensus       148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v----  221 (300)
T COG2813         148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV----  221 (300)
T ss_pred             HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc----
Confidence            4444444444444999999999999999999987 88999999999999999999999888753 77777776543    


Q ss_pred             hCCCCCceEEEEEcCCccc----h----HHHHHHHHccCCCCcEEEE
Q 024097          189 LNGEASSYDFAFVDAEKRM----Y----QEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~----~----~~~l~~~~~lLkpgG~lvi  227 (272)
                          .++||+|+++.+.+.    .    .++++.+.+.|++||.|-+
T Consensus       222 ----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         222 ----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             ----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence                258999999987432    2    3678888999999998766

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.37  E-value=1.5e-11  Score=100.82  Aligned_cols=127  Identities=23%  Similarity=0.383  Sum_probs=95.0

Q ss_pred             CCCCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097           99 SQMQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      .++..+.....+...+-.. ..+.+|||+.||+|..++..+.+-  ..+|+.||.++..++..++|++..+..++++++.
T Consensus        21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~   98 (183)
T PF03602_consen   21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK   98 (183)
T ss_dssp             S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred             cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence            3445555556666666666 789999999999999999877652  3599999999999999999999999988899999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCcc--c-hHHHHHHHH--ccCCCCcEEEEeC
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKR--M-YQEYFELLL--QLIRVGGIIVIDN  229 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~--~-~~~~l~~~~--~lLkpgG~lvi~d  229 (272)
                      +|+...+......  ..+||+||+|++..  . +...++.+.  .+|+++|++++..
T Consensus        99 ~d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen   99 GDAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             SSHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cCHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            9998877665332  47999999998833  2 366777776  8999999999974

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.37  E-value=8.7e-12  Score=104.92  Aligned_cols=106  Identities=22%  Similarity=0.282  Sum_probs=85.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.   ...+++++.+|+.+...      ..++|
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~  107 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSF  107 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcE
Confidence            3467899999999999999999988644799999999999999998875   34568999999876421      14689


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|++...   ..+...+++.+.++|+|||.+++.+..
T Consensus       108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99987543   445678899999999999999986654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.37  E-value=5.3e-12  Score=105.65  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC-----cEEEEEeCChhHHHHHHHHHHHhCCCCC--EEEEEcChhHHHH
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----GCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLK  185 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~  185 (272)
                      .-+...++.++||++||||-.+..+.++.+..     .+|+.+|+||+|+..++++..+.++...  +.++.+|+.+. +
T Consensus        94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p  172 (296)
T KOG1540|consen   94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P  172 (296)
T ss_pred             hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C
Confidence            33344566899999999999999999988632     7999999999999999999887777544  99999999764 3


Q ss_pred             HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                       +    ++++||...+...   ..+....+++++|+|||||.+.+
T Consensus       173 -F----dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c  212 (296)
T KOG1540|consen  173 -F----DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC  212 (296)
T ss_pred             -C----CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence             2    2689999888765   44577889999999999999886

>PLN02823 spermine synthase

Probab=99.36  E-value=2.3e-11  Score=108.49  Aligned_cols=105  Identities=14%  Similarity=0.234  Sum_probs=85.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---CCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++||.||+|.|..+.++++..+ ..+++.+|+++++++.|++.+...+   ...|++++.+|+...+...     .+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~  175 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE  175 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence            4678999999999999999888543 5689999999999999999886432   2468999999999987543     47


Q ss_pred             ceEEEEEcCCcc---------chHHHHH-HHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~---------~~~~~l~-~~~~lLkpgG~lvi~  228 (272)
                      +||+||+|...+         ...++++ .+.+.|+|||++++.
T Consensus       176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            899999995421         1356888 899999999999875

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.35  E-value=6.2e-12  Score=112.07  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+ +.+|+++|+++++++.|+++...    .+++++.+|+.+. +.     .+++||+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv  181 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR  181 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence            567999999999999999998875 57999999999999999987532    3588899998653 11     1468999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++...   ..+....++++.++|+|||.+++-+
T Consensus       182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            998654   3345678999999999999998743

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.35  E-value=1.9e-11  Score=103.99  Aligned_cols=118  Identities=15%  Similarity=0.230  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+...+++.......++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++.++..+
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~  106 (233)
T PRK05134         32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEE  106 (233)
T ss_pred             hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHH
Confidence            34444556666665567889999999999999988874   46899999999999999998876655  47888888866


Q ss_pred             HHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          183 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .....     .++||+|++...   ..+...+++.+.++|+|||.+++...
T Consensus       107 ~~~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        107 LAAEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhhhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            54321     478999998643   33566789999999999999998753

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.35  E-value=1.7e-11  Score=97.65  Aligned_cols=107  Identities=21%  Similarity=0.328  Sum_probs=84.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ..+|||+|||.|.....|++.- -.+.++|+|.++++++.|+...++.++.+.|+|.+.|..+. ...     .++||+|
T Consensus        68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv  140 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV  140 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence            3499999999999999998752 23569999999999999999999999988899999998763 111     4678877


Q ss_pred             EE---------cC--CccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          200 FV---------DA--EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       200 ~~---------d~--~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      .-         .+  .......|+..+.++|+|||+++|..+.|.
T Consensus       141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T  185 (227)
T KOG1271|consen  141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT  185 (227)
T ss_pred             eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence            52         11  122335678888999999999999988775

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.34  E-value=8.2e-12  Score=104.80  Aligned_cols=116  Identities=17%  Similarity=0.089  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC-------------
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------------  169 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------  169 (272)
                      .++...+++..+. ..++.+|||+|||.|..+.+||++   +.+|+|+|+|+.+++.+.+.   +++             
T Consensus        19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~   91 (213)
T TIGR03840        19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRY   91 (213)
T ss_pred             CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceee
Confidence            3455545444331 135579999999999999999974   67999999999999976331   221             


Q ss_pred             -CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          170 -SHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       170 -~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                       ..+++++++|+.+.....     .++||.|+-..     +......+++.+.++|||||++++...
T Consensus        92 ~~~~v~~~~~D~~~~~~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840        92 RAGNIEIFCGDFFALTAAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             ecCceEEEEccCCCCCccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence             236899999998753221     25688876322     244456789999999999998666533

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.34  E-value=1.2e-11  Score=103.73  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      .++.+|||||||+|.++..+++..++.++|+++|+++.           .... .++++++|+.+.  ++.+......++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence            56789999999999999999998876789999999881           1222 489999998763  233222222578


Q ss_pred             eEEEEEcCCcc-------c-------hHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKR-------M-------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~-------~-------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|+++....       +       ....++.+.++|+|||.+++.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            99999875311       1       135788899999999999995

>PTZ00146 fibrillarin; Provisional

Probab=99.34  E-value=1.3e-11  Score=107.06  Aligned_cols=107  Identities=15%  Similarity=0.095  Sum_probs=79.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|+++..+++.+.+.++|+++|+++.+.+...+..+..   .++.++.+|+........   ..++
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~---~~~~  202 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRM---LVPM  202 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhc---ccCC
Confidence            3457789999999999999999999876789999999987664444433221   358899999864211100   0357


Q ss_pred             eEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+||+|....+.. .++.++.+.|||||.+++.
T Consensus       203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            99999998755443 4556788999999999993

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.34  E-value=3e-11  Score=107.45  Aligned_cols=120  Identities=18%  Similarity=0.092  Sum_probs=88.6

Q ss_pred             CCCCCHHHHHHHHH----HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097          100 QMQVSPDQAQLLAM----LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus       100 ~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      ..+.++...+.+..    ++...++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++..++ +++++
T Consensus       150 F~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~  225 (315)
T PRK03522        150 FFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQF  225 (315)
T ss_pred             eeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEE
Confidence            34555555444432    233345789999999999999999984   46999999999999999999999988 46999


Q ss_pred             EEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++|+.+.....     .++||+|++|.+.......+......++|++++.+.
T Consensus       226 ~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        226 QALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             EEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            999998765432     357999999988655433333334446788777763

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.34  E-value=1.5e-11  Score=106.58  Aligned_cols=106  Identities=16%  Similarity=0.253  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCC----CcEEEEEeCChhHHHHHHHHHHH----hC------------------
Q 024097          119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER----AG------------------  168 (272)
Q Consensus       119 ~~~~VLEiG~G~G~----~~~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~----~~------------------  168 (272)
                      ++.+|+|+|||+|.    .++.+++..+.    +.+|+|+|+|+.+++.|++.+-.    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    45556665442    46899999999999999875310    01                  


Q ss_pred             ----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       169 ----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                          +.++|+|.++|..+....      .++||+|++...     .......++++.+.|+|||++++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence                124688999988763221      478999998643     23455789999999999999998543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.33  E-value=1.3e-11  Score=98.41  Aligned_cols=108  Identities=21%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ....+++..+.. ..++++|||||||+|..+..+++.   +.+++++|+++.+++.           .++.....+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~   72 (161)
T PF13489_consen    7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP   72 (161)
T ss_dssp             HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred             HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence            445566666664 567889999999999999999664   3499999999998876           1223332222222


Q ss_pred             HHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .. .     +++||+|++...   ..+...+++.+.++|||||++++.....
T Consensus        73 ~~-~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   73 PF-P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             HC-H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             hc-c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            11 1     589999998765   3457889999999999999999987654

...

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.32  E-value=2.7e-11  Score=105.34  Aligned_cols=108  Identities=23%  Similarity=0.345  Sum_probs=83.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++||++-|.||.++++.+.. + ..+|++||.|..+++.+++|++.+++. ++++++.+|+.+.+..+..   .++|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-E
T ss_pred             cCCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCCC
Confidence            46789999999999999987763 1 348999999999999999999999986 6899999999998776533   3689


Q ss_pred             EEEEEcCC---------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~---------~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+|++|.+         ..+|...+..+.++|+|||+|++...
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            99999987         23477788888999999999887533

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR03438 probable methyltransferase

Probab=99.32  E-value=3e-11  Score=106.84  Aligned_cols=109  Identities=14%  Similarity=0.054  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||+|||+|..+..+++.++++.+|+++|+|++|++.+++++......-++.++++|+.+..+.. .....+...+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEE
Confidence            557999999999999999999876457999999999999999998875433335788999987643322 1000113334


Q ss_pred             EEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++..     ......+++.+.+.|+|||.+++.
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            444432     334567899999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.31  E-value=6.4e-11  Score=102.91  Aligned_cols=139  Identities=17%  Similarity=0.239  Sum_probs=104.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..+++||-||.|.|..+..++++.+ -.+++.+|+++..++.+++.+....  . ..|++++.+|+.+.+...     ..
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~  148 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EE  148 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CC
Confidence            3457999999999999999999865 6799999999999999999987543  2 369999999999988865     45


Q ss_pred             ceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEe
Q 024097          195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMK  267 (272)
Q Consensus       195 ~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (272)
                      +||+|++|....       ....|++.|.+.|+++|+++...    |.   +..+......+....+.+...-...+..+
T Consensus       149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~----~~---~~~~~~~~~~~~~~~~~vf~~~~~~~~~i  221 (282)
T COG0421         149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA----GS---PFLQDEEIALAYRNVSRVFSIVPPYVAPI  221 (282)
T ss_pred             cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec----CC---cccchHHHHHHHHHHHhhccccccceecc
Confidence            899999987533       14789999999999999999862    11   22222333344445555555555555555


Q ss_pred             ec
Q 024097          268 EV  269 (272)
Q Consensus       268 p~  269 (272)
                      |+
T Consensus       222 pt  223 (282)
T COG0421         222 PT  223 (282)
T ss_pred             ce
Confidence            54

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.31  E-value=2.5e-11  Score=102.55  Aligned_cols=125  Identities=18%  Similarity=0.321  Sum_probs=97.7

Q ss_pred             CCCCCHHHHHHHHHHHhhc------CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097          100 QMQVSPDQAQLLAMLVQIL------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~------~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      .....|++.+++...+...      ++..+||+|||+|..++.++..++ .++|+++|.|+.++..|.+|..++++.+++
T Consensus       123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i  201 (328)
T KOG2904|consen  123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI  201 (328)
T ss_pred             eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence            3455688888888776543      456899999999999999999998 899999999999999999999999999999


Q ss_pred             EEEEcCh----hHHHHHHHhCCCCCceEEEEEcCC-----------------------------ccchHHHHHHHHccCC
Q 024097          174 KIKHGLA----ADSLKALILNGEASSYDFAFVDAE-----------------------------KRMYQEYFELLLQLIR  220 (272)
Q Consensus       174 ~~~~~d~----~~~~~~~~~~~~~~~fDlV~~d~~-----------------------------~~~~~~~l~~~~~lLk  220 (272)
                      .+++-+.    .+..+.+     .+++|+++++.+                             ...+..++..+.++|+
T Consensus       202 ~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq  276 (328)
T KOG2904|consen  202 EVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ  276 (328)
T ss_pred             EEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc
Confidence            9885543    3322222     478999987653                             0113345666779999


Q ss_pred             CCcEEEEeCC
Q 024097          221 VGGIIVIDNV  230 (272)
Q Consensus       221 pgG~lvi~d~  230 (272)
                      |||.+.+.-.
T Consensus       277 ~gg~~~le~~  286 (328)
T KOG2904|consen  277 PGGFEQLELV  286 (328)
T ss_pred             cCCeEEEEec
Confidence            9999998754

>PRK03612 spermidine synthase; Provisional

Probab=99.30  E-value=1.3e-11  Score=116.64  Aligned_cols=107  Identities=19%  Similarity=0.292  Sum_probs=84.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH--HHHh---CC-CCCEEEEEcChhHHHHHHHhC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ..++++|||||||+|..+..++++ +...+++++|+++++++.++++  +...   .. .++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            356789999999999999999874 4237999999999999999984  3221   12 358999999998876643   


Q ss_pred             CCCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 024097          191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                        .++||+|++|.....        ..++++.+.++|+|||++++..
T Consensus       371 --~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 --AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             --CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence              478999999865321        3468999999999999999863

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.30  E-value=4.7e-11  Score=100.75  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++.   +.+|+|+|+++++++.|++++...+..+++++.++|+.+.         .++|
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f  120 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF  120 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence            346789999999999999999874   4599999999999999999998777656799999998653         2689


Q ss_pred             EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|++...     .......+.++.+++++++++.+.
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99986432     233556788888888887777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.29  E-value=1.3e-11  Score=107.69  Aligned_cols=94  Identities=22%  Similarity=0.226  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCC--cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ...+|||+|||+|..+..+++.++..  .+++|+|+|+.+++.|+++.      .++++..+|+.+. +.     .+++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~-----~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PF-----ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CC-----cCCce
Confidence            45789999999999999999877532  47999999999999997653      2478888887653 21     14789


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|+.....    ..++++.++|||||++++-
T Consensus       153 D~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        153 DAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            999975442    2467889999999999974

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.28  E-value=3.3e-11  Score=101.54  Aligned_cols=114  Identities=16%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC------------
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------  169 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------  169 (272)
                      ...+...+++..+ ...++.+|||+|||.|..+++||+.   +.+|+|+|+|+.+++.+.+   +.++            
T Consensus        21 ~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~   93 (218)
T PRK13255         21 EVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH   93 (218)
T ss_pred             CCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence            3445444444432 1234579999999999999999974   6799999999999987642   2222            


Q ss_pred             --CCCEEEEEcChhHHHHHHHhCCCCCceEEEEE-----cCCccchHHHHHHHHccCCCCcEEEE
Q 024097          170 --SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       170 --~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~-----d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                        ..++++.++|+.+..+..     .+.||+|+-     ..+......+++.+.++|+|||++++
T Consensus        94 ~~~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         94 YQAGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             cccCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence              246899999998753321     357999983     23345567899999999999986444

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.28  E-value=8.6e-11  Score=99.26  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+.. ++++..+|+.+.....     .++||+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~  115 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV  115 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence            4779999999999999988874   357999999999999999988776653 5889988887654321     368999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++...   ..+...+++.+.+.|+|||.+++...
T Consensus       116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            998643   44567789999999999999998654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.28  E-value=6.6e-11  Score=98.01  Aligned_cols=101  Identities=22%  Similarity=0.339  Sum_probs=84.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      .+||||||.|.+...+|...| +..++|+|+....+..+.+.+...++. ++.++.+|+...+..+..   ++++|.|++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~---~~~v~~i~i   94 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP---PGSVDRIYI   94 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc---CCchheEEE
Confidence            899999999999999999987 789999999999999999999998886 599999999987776643   479999998


Q ss_pred             cCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097          202 DAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       202 d~~~~-----------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+.+           -...+++.+.++|+|||.|.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            75411           157899999999999999987

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.27  E-value=3.3e-11  Score=113.07  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      .+...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++.   .+...+++++++|+.+....+  
T Consensus        28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~--   99 (475)
T PLN02336         28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI--   99 (475)
T ss_pred             HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC--
Confidence            33334444456799999999999999999863   5899999999999877653   233346899999985421111  


Q ss_pred             CCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          190 NGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                        ..++||+|++.....     ....+++++.+.|+|||++++.+..+.
T Consensus       100 --~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~  146 (475)
T PLN02336        100 --SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH  146 (475)
T ss_pred             --CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence              147899999875422     246789999999999999999776544

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.27  E-value=5.9e-11  Score=97.81  Aligned_cols=107  Identities=15%  Similarity=0.189  Sum_probs=76.1

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHH
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKAL  187 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~  187 (272)
                      +...+....++.+|||+|||+|..+..+++...+.++|+++|+++.+           .. .+++++++|+.+.  +..+
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence            33334444678899999999999999999887556799999999864           12 2478888887542  1211


Q ss_pred             HhCCCCCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 024097          188 ILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ......++||+|+++....              .....++.+.++|+|||.+++.
T Consensus        91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            1111246899999875310              1256788899999999999985

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=2.3e-10  Score=92.79  Aligned_cols=128  Identities=18%  Similarity=0.284  Sum_probs=98.7

Q ss_pred             CCCCCCCHHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE
Q 024097           98 GSQMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~  176 (272)
                      ..++..+.....+...+.. ...+.++||+-+|+|..++..+.+-  ..+++.+|.+.+.+...++|++..+...+++++
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~   98 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVL   98 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence            3455566666666777766 4889999999999999999887753  358999999999999999999999988889999


Q ss_pred             EcChhHHHHHHHhCCCCCceEEEEEcCCccc--hHHHHHHH----HccCCCCcEEEEeCC
Q 024097          177 HGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELL----LQLIRVGGIIVIDNV  230 (272)
Q Consensus       177 ~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~----~~lLkpgG~lvi~d~  230 (272)
                      ..|+...++.+..   .++||+||+|.+...  ........    ..+|+|+|.+++..-
T Consensus        99 ~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742          99 RNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             eecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            9999876665521   235999999998442  22222222    378999999999643

>PRK06202 hypothetical protein; Provisional

Probab=99.27  E-value=2.7e-11  Score=103.15  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ..+.+...+...++.+|||||||+|..+..+++..   +++.+|+++|+++++++.|+++....    ++++..+++.+.
T Consensus        48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l  123 (232)
T PRK06202         48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL  123 (232)
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence            33444444444567899999999999999988653   23469999999999999998875432    355555544322


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                       +.     .+++||+|++....+     ....+++++.++++  |.+++.+...+
T Consensus       124 -~~-----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        124 -VA-----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             -cc-----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence             11     147899999875422     23468899999887  66777776654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.27  E-value=1.5e-10  Score=105.31  Aligned_cols=120  Identities=18%  Similarity=0.104  Sum_probs=91.9

Q ss_pred             CCCCCCHHHHHHHHHHH-h---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE
Q 024097           99 SQMQVSPDQAQLLAMLV-Q---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~-~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~  174 (272)
                      +..++.+...+.+...+ .   ..++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|++|.+.++.. +++
T Consensus       209 ~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~  284 (374)
T TIGR02085       209 SFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLS  284 (374)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEE
Confidence            34566776666654432 2   235689999999999999999963   468999999999999999999998885 699


Q ss_pred             EEEcChhHHHHHHHhCCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       175 ~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++.+|+.+.+...     ..+||+|++|.+... ....++.+. .++|++++.+.
T Consensus       285 ~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       285 FAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             EEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            9999998765432     246999999988554 344555555 47898888874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.25  E-value=1.7e-10  Score=107.32  Aligned_cols=120  Identities=17%  Similarity=0.193  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHH-HHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097          102 QVSPDQAQLLA-MLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       102 ~~~~~~~~~l~-~l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ++++...+.+. .++   ...++.+|||+|||+|..++.+++..   .+|+++|+|+++++.|+++++.+++. +++++.
T Consensus       276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~  351 (443)
T PRK13168        276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYH  351 (443)
T ss_pred             EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence            55555544333 332   23456899999999999999999864   58999999999999999999988875 599999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+.+.+.....  ..++||+|++|.+.......++.+.+ ++|++++.+.
T Consensus       352 ~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        352 ANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             eChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999775432100  13579999999986666667766655 6888888874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.24  E-value=1.6e-10  Score=97.96  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=75.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+..+++++..+|...    .     .++||
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~-----~~~fD  129 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L-----LGRFD  129 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c-----cCCcC
Confidence            46789999999999999999875   357999999999999999999887776689999998421    1     47899


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++...     .......++.+.+++++++++.+
T Consensus       130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            9987543     22345667777777665555443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.24  E-value=1.7e-10  Score=97.22  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      ..+||||||.|.+...+|+..| ...++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+..   +++.|-|+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~---~~sl~~I~  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP---DGSLDKIY  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---CCCeeEEE
Confidence            5899999999999999999987 679999999999999999999999986 699999999998887753   35889888


Q ss_pred             EcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097          201 VDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       201 ~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+.+           -...+++.+.+.|+|||.|.+.
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            764411           1578999999999999999873

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.24  E-value=2.5e-11  Score=98.62  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ....|||+|||||..-.+.-.  .+..+||++|.++.|-+++.+.+++.... ++. |+.++..+ ++++    .++++|
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~-l~~l----~d~s~D  147 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGEN-LPQL----ADGSYD  147 (252)
T ss_pred             CccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhc-Cccc----ccCCee
Confidence            334689999999976543321  15789999999999999999999887554 465 89998855 4444    268999


Q ss_pred             EEEEc---CCccchHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVD---AEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .|+..   ....+..+.+.++.++|||||++++=
T Consensus       148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99754   44677888999999999999999873

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.23  E-value=1e-10  Score=94.69  Aligned_cols=111  Identities=12%  Similarity=0.060  Sum_probs=83.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++.   ..+++++|+++.+++.+++++..   .++++++++|+.+....      ..+
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~   77 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ   77 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence            3446679999999999999999986   36999999999999999998843   24799999999875321      246


Q ss_pred             eEEEEEcCCccchHHHHHHHHc--cCCCCcEEEEeCCCCCCcccC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHGKVAD  238 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~--lLkpgG~lvi~d~~~~g~~~~  238 (272)
                      ||.|+.+.+.....+.+..+.+  .+.++|++++..-...--++.
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~  122 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAK  122 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCC
Confidence            9999998875555566666653  345889998876544333333

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.23  E-value=2.7e-10  Score=105.63  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHH-HH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097          102 QVSPDQAQLLAM-LV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       102 ~~~~~~~~~l~~-l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      +.++...+.+.. +.   ...++.+|||+|||+|..++.+++..   .+|+++|+++.+++.|+++++.+++. +++++.
T Consensus       271 Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~  346 (431)
T TIGR00479       271 QVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLA  346 (431)
T ss_pred             ecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEe
Confidence            445554443332 22   23456899999999999999999863   48999999999999999999988875 699999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEE
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|+.+.++.+..  ..++||+|++|.+... ...+++.+.+ ++|++++++
T Consensus       347 ~d~~~~l~~~~~--~~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       347 GTLETVLPKQPW--AGQIPDVLLLDPPRKGCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             CCHHHHHHHHHh--cCCCCCEEEECcCCCCCCHHHHHHHHh-cCCCEEEEE
Confidence            999876654311  1357999999988554 5666776554 789887776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=1.1e-10  Score=101.02  Aligned_cols=116  Identities=17%  Similarity=0.220  Sum_probs=83.2

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+....+++|||||||.|+.+..++..-  ...|+|+|.++...-..+-.-+-.|...++.+. ....+.++.    
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~----  179 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN----  179 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc----
Confidence            4444445688999999999999999999863  357999999998775543322223433333333 223343433    


Q ss_pred             CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                        .+.||.||+-+.   ..+....+..+...|+|||.+|++.....|.
T Consensus       180 --~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  180 --LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             --cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence              378999998776   4567778999999999999999998887775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.21  E-value=2.2e-10  Score=83.20  Aligned_cols=99  Identities=22%  Similarity=0.327  Sum_probs=78.3

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +|+|+|||.|..+..+++ . ...+++++|+++..+..+++.... ....+++++.+|..+.....     .++||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEA-----DESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhcccc-----CCceEEEEE
Confidence            489999999999999987 2 367999999999999988864433 33346899999987754311     478999999


Q ss_pred             cCCcc----chHHHHHHHHccCCCCcEEEEe
Q 024097          202 DAEKR----MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       202 d~~~~----~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +....    ....+++.+.+.|+|||.+++.
T Consensus        73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            87633    4577889999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.21  E-value=9.5e-10  Score=90.43  Aligned_cols=150  Identities=21%  Similarity=0.257  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCH--HHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~--~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      .|..++|+..++.-.+.+.++|+.++.|.  .++.|+-+. ..++++++|-.+++.....++.+...++.+.++|+.|+.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            57789999999999999999999776543  345544332 247899999999998888888888888887789999985


Q ss_pred             h-HHHHHHHhCCCCCceEEEEEcCCccchH-HHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhh
Q 024097          181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (272)
Q Consensus       181 ~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (272)
                      . +.++.+      ...|++++|...+++. .+|+. .++=+.|.++|..|....+.-..            .+...+..
T Consensus       106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~~~~------------~w~~~~~~  166 (218)
T PF07279_consen  106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRSTNGF------------SWRSVLRG  166 (218)
T ss_pred             HHHHHhhc------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCcCCc------------cHHHhcCC
Confidence            4 466665      6799999999988777 66664 44445677777788765432111            23444577


Q ss_pred             CCCeEEEEeecCCC
Q 024097          259 DERVSISMKEVQDA  272 (272)
Q Consensus       259 ~~~~~~~~lp~~~G  272 (272)
                      .+.+.+++||||.|
T Consensus       167 ~r~Vrsv~LPIG~G  180 (218)
T PF07279_consen  167 RRVVRSVFLPIGKG  180 (218)
T ss_pred             CCceeEEEeccCCC
Confidence            88899999999988

The function of this family is unknown.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.21  E-value=1.2e-10  Score=99.89  Aligned_cols=106  Identities=21%  Similarity=0.344  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC---CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++||-||.|.|..+..+++.- +..+++.+|+++..++.|++.+.....   .+|++++.+|+...+...     .+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~  148 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE  148 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred             CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence            368999999999999999988753 356999999999999999998875432   468999999999988754     34


Q ss_pred             -ceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 024097          195 -SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 -~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                       +||+|++|...+       -..++++.+.+.|+|||++++..
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             899999986531       14689999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02672 methionine S-methyltransferase

Probab=99.20  E-value=2.8e-10  Score=113.94  Aligned_cols=122  Identities=14%  Similarity=0.058  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHhhc----CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--------
Q 024097          102 QVSPDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------  169 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~----~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------  169 (272)
                      ...+++..++..+....    ++.+|||+|||+|..++.+++..+ ..+|+++|+|+++++.|++|.+.+++        
T Consensus        97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34455656655532211    246899999999999999999876 57999999999999999999987643        


Q ss_pred             -------CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC--------------c-----------------------
Q 024097          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--------------K-----------------------  205 (272)
Q Consensus       170 -------~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~--------------~-----------------------  205 (272)
                             .++++++++|..+.....     ..+||+|+.+.+              .                       
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g  250 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVED  250 (1082)
T ss_pred             ccccccccccEEEEECchhhhcccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCC
Confidence                   257999999998754321     237999998654              0                       


Q ss_pred             cc----hHHHHHHHHccCCCCcEEEEeC
Q 024097          206 RM----YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       206 ~~----~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+    +..+++.+.++|+|||.+++.-
T Consensus       251 ~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        251 QFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             CcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            00    2445666778999999999863

>PRK05785 hypothetical protein; Provisional

Probab=99.18  E-value=1.5e-10  Score=98.10  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..  +.+|+|+|+|++|++.|++.         ..++++|+.+. +.     .+++||+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~-----~d~sfD~  113 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PF-----RDKSFDV  113 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CC-----CCCCEEE
Confidence            46799999999999999999875  46999999999999998763         13467777553 21     2589999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCc
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGG  223 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG  223 (272)
                      |++...   ..+....++++.++|||..
T Consensus       114 v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        114 VMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             EEecChhhccCCHHHHHHHHHHHhcCce
Confidence            998654   4467789999999999953

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.18  E-value=9.6e-10  Score=99.59  Aligned_cols=124  Identities=19%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             CCCCCCCHHHHHHHHHHH-hhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE
Q 024097           98 GSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~-~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~  174 (272)
                      .+..++++...+.+...+ ....  +.+|||++||+|.+++.+++..   .+|+++|+++.+++.+++|++.+++. +++
T Consensus       182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~  257 (362)
T PRK05031        182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQ  257 (362)
T ss_pred             CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence            345566766665555443 3222  3579999999999999999864   38999999999999999999998886 699


Q ss_pred             EEEcChhHHHHHHHhCCC----------CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097          175 IKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       175 ~~~~d~~~~~~~~~~~~~----------~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++.+|+.+.++.+.....          ..+||+||+|.+... ....++.+.+   +++++++.
T Consensus       258 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        258 IIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             EEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            999999887765422110          125899999998544 4455565554   67777764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.17  E-value=8.1e-10  Score=100.43  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          102 QVSPDQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ........++...+... +..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++. .+++..+|+
T Consensus        39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da  116 (382)
T PRK04338         39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDA  116 (382)
T ss_pred             cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhH
Confidence            33444444443333322 346899999999999999998765 458999999999999999999998886 478999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+.+..      .++||+|++|.. .....+++.+.+.+++||++.+.
T Consensus       117 ~~~l~~------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        117 NALLHE------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHHHhh------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            776542      257999999975 44567888888889999999996

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.17  E-value=5.2e-10  Score=103.93  Aligned_cols=126  Identities=22%  Similarity=0.288  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .+....+.+...++  ...++.+|||+++|.|+-|..++..++..+.|++.|+++..++..++++++.|+. ++.+...|
T Consensus        94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D  172 (470)
T PRK11933         94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFD  172 (470)
T ss_pred             EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCc
Confidence            34444555555555  5568899999999999999999999977789999999999999999999999986 48888888


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +......+     .+.||.|++|++.+                         ...+++..+.++|||||+||..-+...
T Consensus       173 ~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        173 GRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             hhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence            87643333     36799999997621                         125678888899999999998766543

>PHA03412 putative methyltransferase; Provisional

Probab=99.16  E-value=5.4e-10  Score=94.03  Aligned_cols=115  Identities=13%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ...+..+..+.  +....+.+|||+|||+|..++.+++..+  +..+|+++|+++.+++.|++++.      ++.++.+|
T Consensus        34 fTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D  105 (241)
T PHA03412         34 FTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINAD  105 (241)
T ss_pred             CCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcc
Confidence            44455555443  2233467999999999999999998643  25699999999999999998752      47889999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-----c----------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-----~----------~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +....  +     .++||+|+++.+..     +          ...+++.+.+++++|+.|+=.+++
T Consensus       106 ~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~  165 (241)
T PHA03412        106 ALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA  165 (241)
T ss_pred             hhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence            86532  1     36899999986511     1          344677788888888865444433

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.15  E-value=6.2e-10  Score=90.55  Aligned_cols=112  Identities=20%  Similarity=0.377  Sum_probs=74.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--CCCCEEEEEcChhHHH-HHHHhCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~  192 (272)
                      ...++++|||+|||+|..++.++...+ ..+|+.+|.++ .++..+.|++.++  ...++++...|..+.. ....   +
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~  116 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E  116 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence            456789999999999999999998743 57999999998 9999999999876  5567888887765532 2222   1


Q ss_pred             CCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          193 ASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       193 ~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..+||+|+...   .......+++.+.++|+++|.+++..-.+
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            36899998543   25667888899999999999877654433

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.15  E-value=3.3e-10  Score=93.30  Aligned_cols=158  Identities=16%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .-.|.....+..++-..+|+.|+|+|...|++++++|..   ++..++|+++|++.....  ++.++...+.++|++++|
T Consensus        15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G   92 (206)
T PF04989_consen   15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG   92 (206)
T ss_dssp             SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES
T ss_pred             hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC
Confidence            445777778888888899999999999999999998764   445789999999654332  222333456679999999


Q ss_pred             ChhHH--HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC----CcCC--CHhhHH
Q 024097          179 LAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVN--DAKTIS  248 (272)
Q Consensus       179 d~~~~--~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~----~~~~--~~~~~~  248 (272)
                      |..+.  +.............+|+.|+.  ..+...-|+...+++++|+++|+.|..+......    +.+.  +....+
T Consensus        93 ds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~a  172 (206)
T PF04989_consen   93 DSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTA  172 (206)
T ss_dssp             -SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHH
T ss_pred             CCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHH
Confidence            98763  222211111245668888876  4567778888899999999999999875443222    1221  223445


Q ss_pred             HHHHHHHhhhCCCeEE
Q 024097          249 IRNFNKNLMEDERVSI  264 (272)
Q Consensus       249 ~~~~~~~l~~~~~~~~  264 (272)
                      +++|   +.++++|+.
T Consensus       173 v~~f---L~~~~~f~i  185 (206)
T PF04989_consen  173 VKEF---LAEHPDFEI  185 (206)
T ss_dssp             HHHH---HHTTTTEEE
T ss_pred             HHHH---HHHCCCcEe
Confidence            5555   456777654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.2e-09  Score=87.99  Aligned_cols=102  Identities=17%  Similarity=0.243  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          104 SPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       104 ~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      .+..+..+...+.   ...++.|+|+|||||.+++..+.. + ..+|+|+|+++++++.+++|..+  +..++.|+.+|+
T Consensus        27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv  102 (198)
T COG2263          27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADV  102 (198)
T ss_pred             ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcch
Confidence            3444444444443   346778999999999999987764 3 36899999999999999999987  445799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHcc
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQL  218 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~l  218 (272)
                      .+.         ...+|.++++.+.     +.-..+++.+++.
T Consensus       103 ~~~---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263         103 SDF---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             hhc---------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence            764         4789999998772     2345677776654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.12  E-value=4.5e-10  Score=92.98  Aligned_cols=101  Identities=20%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++..|+|+.||.|.+++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.+.++       .+.|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~  170 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKF  170 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-E
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------cccc
Confidence            34678999999999999999998543 678999999999999999999999999999999999988765       3789


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |-|+++.+.... .++..+..++++||++.
T Consensus       171 drvim~lp~~~~-~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  171 DRVIMNLPESSL-EFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred             CEEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence            999998764443 68999999999999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.11  E-value=9.8e-10  Score=97.34  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+|+.+++.++++.+..+.    ..++++..+|..+.         ++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~  211 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SG  211 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CC
Confidence            5679999999999999999974   46999999999999999999876522    23578888886432         37


Q ss_pred             ceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +||+|++.....     .....++.+.+ +.+||+++.
T Consensus       212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        212 KYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            899998654321     22334555554 456666554

>PHA03411 putative methyltransferase; Provisional

Probab=99.09  E-value=1e-09  Score=94.45  Aligned_cols=97  Identities=9%  Similarity=0.038  Sum_probs=74.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ....+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++++      .+++++++|+.+...       ..+||
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-------~~kFD  128 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-------NEKFD  128 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-------cCCCc
Confidence            3457999999999999999888754 469999999999999998864      258899999987532       36899


Q ss_pred             EEEEcCCccc-----------------------hHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRM-----------------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~-----------------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+++.+...                       ...++.....+|+|+|.+.+-
T Consensus       129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            9999765110                       134555566889999977654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.08  E-value=4.7e-09  Score=94.79  Aligned_cols=123  Identities=19%  Similarity=0.134  Sum_probs=88.6

Q ss_pred             CCCCCCHHHHHHHH-HHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097           99 SQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus        99 ~~~~~~~~~~~~l~-~l~~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      +..++++...+.+. .......  +.+|||+|||+|.+++.+++..   .+|+++|+++++++.|++|++.+++. ++++
T Consensus       174 ~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~  249 (353)
T TIGR02143       174 SFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQI  249 (353)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence            34456666554444 3333322  3579999999999999999875   38999999999999999999998886 5999


Q ss_pred             EEcChhHHHHHHHhC-------C-C--CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097          176 KHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~-------~-~--~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.+|+.+.++.....       + .  ...||+||+|.+... ....++.+.+   |++++.+.
T Consensus       250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            999998876542110       0 0  124899999998544 4455566554   77877774

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.07  E-value=6.2e-10  Score=93.69  Aligned_cols=153  Identities=14%  Similarity=0.155  Sum_probs=98.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-h------C----C
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-A------G----V  169 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~------~----~  169 (272)
                      -.++|...+++.. ....++.+||..|||.|+-..+|++.   +.+|+|+|+|+.+++.+.+.... .      +    -
T Consensus        20 ~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~   95 (218)
T PF05724_consen   20 GEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ   95 (218)
T ss_dssp             TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred             CCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence            3567777777777 44556679999999999999999985   57999999999999887432211 0      0    1


Q ss_pred             CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCH
Q 024097          170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA  244 (272)
Q Consensus       170 ~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~  244 (272)
                      .++|++.++|+.+..+..     .++||+|+=.+     +......+.+.+.++|+|||.+++--+.++....   ...+
T Consensus        96 ~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---~GPP  167 (218)
T PF05724_consen   96 AGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---EGPP  167 (218)
T ss_dssp             TSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---SSSS
T ss_pred             CCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---CCcC
Confidence            246899999998854321     25899998432     3566788999999999999995443333332211   1112


Q ss_pred             hhHHHHHHHHHhhhCCCeEEEEe
Q 024097          245 KTISIRNFNKNLMEDERVSISMK  267 (272)
Q Consensus       245 ~~~~~~~~~~~l~~~~~~~~~~l  267 (272)
                      ......++.+.+.  ++|+...+
T Consensus       168 f~v~~~ev~~l~~--~~f~i~~l  188 (218)
T PF05724_consen  168 FSVTEEEVRELFG--PGFEIEEL  188 (218)
T ss_dssp             ----HHHHHHHHT--TTEEEEEE
T ss_pred             CCCCHHHHHHHhc--CCcEEEEE
Confidence            2333455555554  66665543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.06  E-value=3.6e-09  Score=95.78  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=87.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+...     ..+||+|+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence            48999999999999999987542358999999999999999999988775 5899999998877653     36799999


Q ss_pred             EcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          201 VDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|. .....++++.+.+.+++||+|.+.
T Consensus       120 lDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       120 IDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             eCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            998 455568999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=99.05  E-value=1.3e-09  Score=100.97  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .+.|+|||||+|..+...+++.   ....+|++||.++.+....++.++..++.++|+++++|..+.-.       +.+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            5789999999999988777653   22469999999999998888887889999999999999988533       4699


Q ss_pred             EEEEEcC-----CccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+|++.-     ..+..++.+....+.|||||+++=
T Consensus       260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence            9999642     234566778888899999998774

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.05  E-value=5.4e-09  Score=91.88  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+++.....+...+...++.+|||||||+|..|..+++.   ..+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus        19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal   95 (294)
T PTZ00338         19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL   95 (294)
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence            456666666666666667889999999999999999986   35899999999999999999987765568999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR  206 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~  206 (272)
                      +..        ...||.|+.+.+..
T Consensus        96 ~~~--------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         96 KTE--------FPYFDVCVANVPYQ  112 (294)
T ss_pred             hhc--------ccccCEEEecCCcc
Confidence            742        24689999877644

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.05  E-value=3.4e-09  Score=83.51  Aligned_cols=124  Identities=22%  Similarity=0.148  Sum_probs=98.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ++....++-.++.|...+.-..+..|||+|.|||..|..++++--+...++++|.+++++....+.+.      .+.++.
T Consensus        27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~  100 (194)
T COG3963          27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN  100 (194)
T ss_pred             eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence            44557788888888888888888999999999999999999876556789999999999988777652      366999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+.+.-..+.+. ....||.|++.-+     .....++++.+...|+.||.++--
T Consensus       101 gda~~l~~~l~e~-~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf  155 (194)
T COG3963         101 GDAFDLRTTLGEH-KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF  155 (194)
T ss_pred             cchhhHHHHHhhc-CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            9998754333222 2467999998654     344567899999999999998853

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.05  E-value=3e-09  Score=86.97  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc--------EEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      .+.+..+..|..+....++..|||--||+|.+.+..+.......        +++|+|+++++++.|++|++.+++.+.+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            67788899999998888889999999999999988766544222        4899999999999999999999998889


Q ss_pred             EEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----------cchHHHHHHHHccCCCCcEEEEe
Q 024097          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+.+.|+.+.. ..     .+++|.|++|.+.           .-|..+++.+.+++++..++++.
T Consensus        91 ~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   91 DFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             EEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99999998754 11     4789999999761           22566788888999996666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.8e-09  Score=91.27  Aligned_cols=115  Identities=18%  Similarity=0.212  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+....++.+++...++.+|+|-|+|+|..+.++++.+.+.|+++.+|......+.|++.+++.++.+++++.+-|...
T Consensus        89 ~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~  168 (314)
T KOG2915|consen   89 LYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG  168 (314)
T ss_pred             EecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence            44555677778888999999999999999999999999988999999999999999999999999999999999998875


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCc
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG  223 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG  223 (272)
                      .-...    .+..+|.||+|.+.++.  .+-.+.++||.+|
T Consensus       169 ~GF~~----ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g  203 (314)
T KOG2915|consen  169 SGFLI----KSLKADAVFLDLPAPWE--AIPHAAKILKDEG  203 (314)
T ss_pred             CCccc----cccccceEEEcCCChhh--hhhhhHHHhhhcC
Confidence            32111    14689999999775442  3444455666655

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=1.8e-09  Score=92.35  Aligned_cols=108  Identities=18%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      .+.......+.++|||||+|.|..+..++++.| +.+++.+|. |+.++.+++       .+|++++.||+.+.+     
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~-----  156 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL-----  156 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC-----
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh-----
Confidence            334444455668999999999999999999998 889999999 888888877       568999999998532     


Q ss_pred             CCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCC--cEEEEeCCCCCCc
Q 024097          190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVG--GIIVIDNVLWHGK  235 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpg--G~lvi~d~~~~g~  235 (272)
                         +. +|++++...     .+....+++++.+.|+||  |.|+|.+...+..
T Consensus       157 ---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  157 ---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             ---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred             ---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence               24 999998654     334667899999999999  9999988876543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.02  E-value=3.2e-10  Score=93.85  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=83.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++.+|||..+|-||.++..+++   ++ +|+++|.+|..++.|+-|--..++ ...++++.||+.+..+.+    +++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~----~D~  204 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF----DDE  204 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC----Ccc
Confidence            346889999999999999988875   55 999999999999988755322222 235899999999988877    367


Q ss_pred             ceEEEEEcCCc-----c-chHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~~~-----~-~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +||+|+.|.+.     + ...+++.+++++|||||.++-
T Consensus       205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            89999998762     1 246789999999999999874

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=2.4e-09  Score=89.16  Aligned_cols=111  Identities=17%  Similarity=0.333  Sum_probs=79.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----------------------------  169 (272)
                      ..++.+|||||-+|..++.+|+.+. .-.+.|+||++..++.|+++++..--                            
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            4677899999999999999999987 45799999999999999998764210                            


Q ss_pred             ------CCCEEEEEcCh----hHHHHHHHhCCCCCceEEEEEcC---------CccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          170 ------SHKVKIKHGLA----ADSLKALILNGEASSYDFAFVDA---------EKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       170 ------~~~v~~~~~d~----~~~~~~~~~~~~~~~fDlV~~d~---------~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                            .+++.+...+.    .+.+. .    ....||+|++-.         ..+....+|.++.++|.|||++|+.--
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~-~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLD-M----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhh-h----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence                  01111111111    11121 1    246899998532         244578899999999999999999765


Q ss_pred             CCCC
Q 024097          231 LWHG  234 (272)
Q Consensus       231 ~~~g  234 (272)
                      -|..
T Consensus       211 pWks  214 (288)
T KOG2899|consen  211 PWKS  214 (288)
T ss_pred             chHH
Confidence            5543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.01  E-value=8.3e-10  Score=88.11  Aligned_cols=78  Identities=22%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +.|+|+.||.|+.++.||+.+.   +|+++|+++..++.|+.|.+-.|+.++|+++++|+.+.++.+..   ...||+||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF   74 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF   74 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence            3699999999999999999854   89999999999999999999999999999999999987654311   12289999


Q ss_pred             EcCC
Q 024097          201 VDAE  204 (272)
Q Consensus       201 ~d~~  204 (272)
                      ++.+
T Consensus        75 lSPP   78 (163)
T PF09445_consen   75 LSPP   78 (163)
T ss_dssp             E---
T ss_pred             ECCC
Confidence            9875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.01  E-value=2.6e-09  Score=90.00  Aligned_cols=128  Identities=9%  Similarity=-0.000  Sum_probs=89.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH------H-----hC
Q 024097          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE------R-----AG  168 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~------~-----~~  168 (272)
                      ...+++...+.+..+.. .++.+||..|||.|....+|++.   +.+|+|+|+|+.+++.+.+...      .     .-
T Consensus        25 ~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~  100 (226)
T PRK13256         25 QESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY  100 (226)
T ss_pred             cCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccccccee
Confidence            33556666556554432 24579999999999999999985   6789999999999988755210      0     00


Q ss_pred             CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       169 ~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      -..++++.++|+.+..+..   ...++||+|+-.+     +......+.+.+.++|+|||.+++-.....+
T Consensus       101 ~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~  168 (226)
T PRK13256        101 KGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK  168 (226)
T ss_pred             ccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence            1236899999998853200   0136899987432     3555778999999999999998876554443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.5e-09  Score=87.24  Aligned_cols=115  Identities=19%  Similarity=0.265  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhC--------C-CCC
Q 024097          105 PDQAQLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAG--------V-SHK  172 (272)
Q Consensus       105 ~~~~~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~--------~-~~~  172 (272)
                      |..-..+...+.  ..++.+.||+|+|+|+.+..++..+...+ ..+|||.-++.++.+++++.+.-        + ..+
T Consensus        66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~  145 (237)
T KOG1661|consen   66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE  145 (237)
T ss_pred             hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence            444444444443  56888999999999999999997775444 45999999999999999988643        1 246


Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.++.||.....++      ..+||.|++.+....   ..+++...|++||.|++-
T Consensus       146 l~ivvGDgr~g~~e------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  146 LSIVVGDGRKGYAE------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             eEEEeCCccccCCc------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence            88999999775443      589999999876444   356677788999999985

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.2e-08  Score=93.97  Aligned_cols=123  Identities=21%  Similarity=0.223  Sum_probs=97.2

Q ss_pred             CCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097           98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      ++..+.++...+-|...+.    ..++++|||+-||.|.+++.+|+.   ..+|+|+|+++++++.|++|.+.++..+ +
T Consensus       268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~  343 (432)
T COG2265         268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-V  343 (432)
T ss_pred             CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-E
Confidence            4566788877776665543    346689999999999999999965   4599999999999999999999999986 9


Q ss_pred             EEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|..+++.+......   +...+|.|++|.+..... .+++.+. .++|..++.+.
T Consensus       344 ~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVS  395 (432)
T COG2265         344 EFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVS  395 (432)
T ss_pred             EEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence            999999988776542   135789999999976655 5555555 45777777763

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.97  E-value=5.3e-09  Score=92.78  Aligned_cols=126  Identities=18%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ...+.+|+|.-+|.|++++.+|+.-.  .+|+++|+||.+++..++|++.+++.+++..++||+.+..+.+      +.+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a  257 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA  257 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence            34589999999999999999998743  3499999999999999999999999988999999999987753      789


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHh
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNL  256 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l  256 (272)
                      |-|++..+.. ...++..+.+.+++||++.++...-.....     +.....++++....
T Consensus       258 DrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-----~~~~~~i~~~~~~~  311 (341)
T COG2520         258 DRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFVPEDDIE-----ERPEKRIKSAARKG  311 (341)
T ss_pred             CEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEeccchhhcc-----cchHHHHHHHHhhc
Confidence            9999987653 346888899999999999998765433211     12344555555443

>PRK00536 speE spermidine synthase; Provisional

Probab=98.97  E-value=2e-08  Score=86.40  Aligned_cols=98  Identities=10%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ..++++||-||.|-|..+..++++ +  .+|+.||+++++++.+++.+...  ++ ..|++++..     ..+.    ..
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----~~  137 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----DI  137 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc----cC
Confidence            457899999999999999999987 3  39999999999999999965542  22 457888751     1111    13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...  ...+++.+.+.|+|||+++..
T Consensus       138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Q  170 (262)
T PRK00536        138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISV  170 (262)
T ss_pred             CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEEC
Confidence            689999999652  357889999999999999986

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.95  E-value=1.4e-08  Score=89.87  Aligned_cols=83  Identities=14%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEE-cChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKH-GLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~f  196 (272)
                      ...+|||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.++++++. .+..+....+..  ..+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCce
Confidence            357999999999998888887765 689999999999999999999999 7888899875 344333322210  14689


Q ss_pred             EEEEEcCC
Q 024097          197 DFAFVDAE  204 (272)
Q Consensus       197 DlV~~d~~  204 (272)
                      |+|+++.+
T Consensus       191 DlivcNPP  198 (321)
T PRK11727        191 DATLCNPP  198 (321)
T ss_pred             EEEEeCCC
Confidence            99999876

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=1.4e-08  Score=91.64  Aligned_cols=129  Identities=19%  Similarity=0.291  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      .+.....++...++...++.+|||+.++.|+=|..+++.+.. +..|+++|+++..++..++++++.|..+ +.++..|+
T Consensus       139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~  217 (355)
T COG0144         139 YVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDA  217 (355)
T ss_pred             EEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccc
Confidence            455666777777888889999999999999999999999874 3556999999999999999999999986 78888877


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ........   ..++||.|++|++..                         -..++++.+.++|||||+|+...+...-
T Consensus       218 ~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         218 RRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             cccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            54332221   123699999997511                         1345788888999999999998776543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.94  E-value=4.3e-09  Score=85.57  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||.|....++.+.  .+.+.+|+|++++.+..+.+    .|    +.++++|+.+.+..+    ++++||
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f----~d~sFD   77 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADF----PDQSFD   77 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhC----CCCCcc
Confidence            36789999999999998888875  36899999999998765544    23    679999998877665    368999


Q ss_pred             EEEEcCCc---cchHHHHHHHHccCCCCcEEEEeCCC---------CCCcccCC-----cC---CCHhhHHHHHHHHHhh
Q 024097          198 FAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVL---------WHGKVADQ-----MV---NDAKTISIRNFNKNLM  257 (272)
Q Consensus       198 lV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~d~~---------~~g~~~~~-----~~---~~~~~~~~~~~~~~l~  257 (272)
                      .|++....   ......++++.|+-| .+++.+.|..         +.|++.-.     .|   +.-....+++|-+...
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~  156 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR  156 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence            99987653   335566777766533 4677777752         46665321     11   2233457888887765


Q ss_pred             hC
Q 024097          258 ED  259 (272)
Q Consensus       258 ~~  259 (272)
                      +.
T Consensus       157 ~~  158 (193)
T PF07021_consen  157 EL  158 (193)
T ss_pred             HC
Confidence            43

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=2e-08  Score=80.27  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .++.++|||||+|..+..+++...++..+.++|+||.+.+..++..+.++.  +++.++.|..+.+.       .++.|+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~-------~~~VDv  113 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR-------NESVDV  113 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc-------cCCccE
Confidence            377899999999999999999988788999999999999999988877665  48889888877665       478999


Q ss_pred             EEEcCC--------c----------------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          199 AFVDAE--------K----------------RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       199 V~~d~~--------~----------------~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ++.+.+        .                .-...++..+-.+|.|.|++.+--+..
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA  171 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence            887643        0                012345566667889999998864443

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.93  E-value=2.1e-09  Score=88.31  Aligned_cols=113  Identities=14%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHHHHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .+..+..+-...++....  +.-|||||||+|.++..+...   +...+|+|+|+.|++.|.+.-    +.  -.++.+|
T Consensus        31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~D  101 (270)
T KOG1541|consen   31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCD  101 (270)
T ss_pred             eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeee
Confidence            344444444444444444  678999999999999877652   567899999999999998622    11  2567777


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCC--------------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAE--------------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~--------------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .-+-++..     +++||-+++...              ......||..++..|++|+..|+.
T Consensus       102 MG~Glpfr-----pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  102 MGEGLPFR-----PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             cCCCCCCC-----CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            76655543     689999875321              223456788899999999998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.92  E-value=2.7e-08  Score=86.74  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=76.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ..+++...+.+...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++++..    .+++++++|+
T Consensus        24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~   96 (272)
T PRK00274         24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA   96 (272)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence            34566666666666666678899999999999999999874   3899999999999999887632    4799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHc
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ  217 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~  217 (272)
                      .+....      +-.+|.|+.+.+..-...++..+..
T Consensus        97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274         97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             hcCCHH------HcCcceEEEeCCccchHHHHHHHHh
Confidence            874211      1115788877664444555555543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.92  E-value=7.8e-09  Score=91.17  Aligned_cols=118  Identities=20%  Similarity=0.239  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-C
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L  179 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d  179 (272)
                      ..+.|..+..+..+....++..|||=-||||...+.....   +++++|+|++..|++-|+.|++..++.+ ..+... |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence            3788999999999999999999999999999998876643   6899999999999999999999998765 544444 8


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +... + +    ...++|.|..|.+-            +-+.++++.+.++|++||++++-
T Consensus       255 a~~l-p-l----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         255 ATNL-P-L----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             cccC-C-C----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            8654 3 3    13469999999761            12678899999999999999984

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.92  E-value=2.6e-08  Score=87.21  Aligned_cols=152  Identities=19%  Similarity=0.241  Sum_probs=113.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......+...++...++.+|||+.++.|+-+..+++.+...+.+++.|+++..+...++++++.|... +.+...|+.
T Consensus        68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~  146 (283)
T PF01189_consen   68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR  146 (283)
T ss_dssp             EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred             EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence            3445555666667777788999999999999999999999878999999999999999999999999874 888878887


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccC----CCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI----RVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lL----kpgG~lvi~d~~~  232 (272)
                      ...+...    ...||.|++|++..                         ...+.++.+.+.+    ||||++|..-...
T Consensus       147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            7654432    24699999997510                         1245788888999    9999999875543


Q ss_pred             CCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeec
Q 024097          233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEV  269 (272)
Q Consensus       233 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  269 (272)
                      .-.        +....++.|++   ++|+++..-++.
T Consensus       223 ~~e--------ENE~vV~~fl~---~~~~~~l~~~~~  248 (283)
T PF01189_consen  223 SPE--------ENEEVVEKFLK---RHPDFELVPIPL  248 (283)
T ss_dssp             HGG--------GTHHHHHHHHH---HSTSEEEECCES
T ss_pred             HHH--------HHHHHHHHHHH---hCCCcEEEeccc
Confidence            221        12234565655   578887665443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.92  E-value=1.5e-08  Score=87.60  Aligned_cols=91  Identities=14%  Similarity=0.079  Sum_probs=73.3

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ..+++.....+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+
T Consensus        11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~   84 (258)
T PRK14896         11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA   84 (258)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc
Confidence            3567777777777777677889999999999999999987   35899999999999999988753   34799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCc
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEK  205 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~  205 (272)
                      .+..        ...||.|+.+.+.
T Consensus        85 ~~~~--------~~~~d~Vv~NlPy  101 (258)
T PRK14896         85 LKVD--------LPEFNKVVSNLPY  101 (258)
T ss_pred             ccCC--------chhceEEEEcCCc
Confidence            7642        1357999887653

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.90  E-value=1.1e-08  Score=84.17  Aligned_cols=115  Identities=17%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH--hCCCCCceEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA  199 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~~fDlV  199 (272)
                      +|||||||||-.+.++++.+| ..+-...|.++....-.+..+...++.+-..-+..|+.+......  .....++||.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            599999999999999999998 678899999999887777777777765433344444443211110  00014689999


Q ss_pred             EEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC-Cccc
Q 024097          200 FVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH-GKVA  237 (272)
Q Consensus       200 ~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~-g~~~  237 (272)
                      |+...     ......+|+.+.++|++||.|++-..+.. |...
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t  150 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT  150 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence            97543     44567789999999999999999876644 4443

The function of this family is unknown.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=2.5e-09  Score=89.12  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=78.3

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +|||||||.|.....+.+..+. +-+|+++|.+|.+++..+++.....  .++.....|...  +.+...-+.+++|+|.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceEE
Confidence            7999999999999999987652 3689999999999999988754322  345555455433  2222222467888775


Q ss_pred             Ec-----CCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          201 VD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       201 ~d-----~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +.     -.+......++++.++|||||.|++-|...
T Consensus       150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            32     235567788999999999999999987653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.87  E-value=2.4e-09  Score=89.27  Aligned_cols=111  Identities=17%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhcCCC-EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          108 AQLLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       108 ~~~l~~l~~~~~~~-~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ..++..++...++. .++|+|||+|..++.++++..   +|+++|+++.|++.|++.....-..-..++...+..+.+  
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~--   95 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL--   95 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence            45566666555544 899999999988888888754   899999999999988775422111111122211111111  


Q ss_pred             HHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCc-EEEE
Q 024097          187 LILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGG-IIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG-~lvi  227 (272)
                          |.+++.|+|.+.-..+  +...+++.+.++||+.| ++.+
T Consensus        96 ----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   96 ----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                2268999998765433  46789999999999876 6665

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.87  E-value=3.6e-09  Score=87.53  Aligned_cols=130  Identities=15%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      -+++||+|||||..+..+-...   .+++|+|+|..|+++|.++    ++-+  ++.++++..+++..    ++++||+|
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi  192 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLI  192 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccch
Confidence            5799999999999998887764   3899999999999988763    2211  34455555444422    35799999


Q ss_pred             EEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          200 FVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       200 ~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                      .....   ......++--+..+|+|||.+.+.-=.   |.+.+..|.   .+...-+.|........+++.+
T Consensus       193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps---~RyAH~~~YVr~~l~~~Gl~~i  261 (287)
T COG4976         193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS---QRYAHSESYVRALLAASGLEVI  261 (287)
T ss_pred             hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh---hhhccchHHHHHHHHhcCceEE
Confidence            75432   344566777788999999999985321   222233332   1122234455555555566544

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.87  E-value=1.7e-08  Score=88.37  Aligned_cols=82  Identities=21%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++..+||.+||.|+.+..+++.+++.++|+|+|.++++++.|++.+..   .++++++++|+.+....+..  +..++|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~--~~~~vD   92 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE--GLGKVD   92 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc--CCCccC
Confidence            4667999999999999999999987678999999999999999988754   45899999999887554422  123799


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      .|++|..
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9998865

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.86  E-value=9.3e-09  Score=85.13  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..  +..++++|+++++++.+++.        +++++++|+.+.++.+    .+++||+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~----~~~sfD~   78 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF----PDKSFDY   78 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc----CCCCcCE
Confidence            56799999999999999888653  45789999999999887541        3678888876533211    1478999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRV  221 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkp  221 (272)
                      |++...   ..+...+++++.+.+++
T Consensus        79 Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        79 VILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            998765   34456677777776654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.85  E-value=4.1e-08  Score=84.73  Aligned_cols=102  Identities=15%  Similarity=0.125  Sum_probs=75.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+...+.+...+...++.+|||||||+|..+..+++..+   +|+++|+++.+++.+++++..   ..+++++.+|+.
T Consensus        12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~   85 (253)
T TIGR00755        12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDAL   85 (253)
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchh
Confidence            45666666666666666788999999999999999998754   699999999999999887643   347999999997


Q ss_pred             HHHHHHHhCCCCCceE---EEEEcCCccchHHHHHHHHc
Q 024097          182 DSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLLQ  217 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fD---lV~~d~~~~~~~~~l~~~~~  217 (272)
                      +...        ..||   +|+.+.+.......+..+..
T Consensus        86 ~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        86 KVDL--------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             cCCh--------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            6422        1344   77776664444555555554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.85  E-value=1.8e-07  Score=80.49  Aligned_cols=129  Identities=16%  Similarity=0.171  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ....+.+..+.....+-+||||.||.|...+-.....+. ..+|...|.++..++..++.++..|+.+-++|.++|+.+.
T Consensus       121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            444445555555567889999999999999988888774 3689999999999999999999999998779999999884


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc---c---hHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          184 LKALILNGEASSYDFAFVDAEKR---M---YQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~---~---~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      .... .  .....+++++.+-.+   +   ....+.-+...+.|||++|..+--|+...
T Consensus       201 ~~l~-~--l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  201 DSLA-A--LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             hHhh-c--cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence            2211 0  034579998876522   2   44467778899999999999988887664

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.85  E-value=1.2e-08  Score=89.72  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=79.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++.|||+|||+|..++..|++-  ..+|+++|.+.-+ +.|++.+..+++.+.|++++|.+.+.  .++    .++.
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eKV  128 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEKV  128 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC----ccce
Confidence            5688999999999999999999874  3689999997655 99999999999999999999999875  221    3789


Q ss_pred             EEEEEcCC--ccchHHHHHHHH----ccCCCCcEEEEe
Q 024097          197 DFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~--~~~~~~~l~~~~----~lLkpgG~lvi~  228 (272)
                      |+|+..--  .--+...++.+.    +.|+|||.++=+
T Consensus       129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            99986532  111223333332    789999987644

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.79  E-value=5.8e-08  Score=79.46  Aligned_cols=96  Identities=20%  Similarity=0.366  Sum_probs=80.4

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +++|||+|.|.-++.++-..| +.+++.+|.+...+...+......++. +++++++.+.+  ..     ...+||+|++
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~-----~~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE-----YRESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT-----TTT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc-----cCCCccEEEe
Confidence            899999999999999998887 789999999999999999999999997 59999999977  11     1589999998


Q ss_pred             cCCccchHHHHHHHHccCCCCcEEEE
Q 024097          202 DAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       202 d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      -+.. ....+++.+.+++++||.+++
T Consensus       122 RAv~-~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  122 RAVA-PLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             ESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred             ehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence            8754 455788999999999999886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.79  E-value=6.6e-08  Score=91.24  Aligned_cols=103  Identities=15%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ....+||||||.|.+...+|...| +..++|+|+....+..+.+.....++. ++.++.+|+......+    .++++|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~----~~~sv~~  420 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL----PNNSLDG  420 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc----CcccccE
Confidence            356899999999999999999987 789999999999998888888888876 5888888875444333    2478999


Q ss_pred             EEEcCCccc-----------hHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRM-----------YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+.++           ...+++.+.++|+|||.|.+
T Consensus       421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            998654111           57799999999999998887

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.79  E-value=3.2e-08  Score=88.29  Aligned_cols=107  Identities=10%  Similarity=0.131  Sum_probs=71.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---------CCCCEEEEEcChhHH-HHHHH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI  188 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~-~~~~~  188 (272)
                      ++.+|||+|||-|+-..-+...-  -.+++|+|++.+.++.|+++++...         ..-...++.+|.... +....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            66899999999888666666542  4699999999999999999984311         112357788887642 22111


Q ss_pred             hCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .. ...+||+|-+-..       ......+++.+...|+|||+++..
T Consensus       140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            10 1259999977543       334567899999999999999974

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=5.7e-08  Score=74.92  Aligned_cols=104  Identities=13%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~-~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  185 (272)
                      .++++.......++++|||||||+|. .+..|++.   +..|+++|+++..++.++++        .++++.+|..+.-.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            44555555555566899999999997 77777753   57999999999988877664        26889999887443


Q ss_pred             HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+     -..+|+|+.--+.......+-++.+.+  |.-+++.
T Consensus        73 ~~-----y~~a~liysirpp~el~~~~~~la~~~--~~~~~i~  108 (134)
T PRK04148         73 EI-----YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLIIK  108 (134)
T ss_pred             HH-----HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence            33     367999998777666555555555533  4445553

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.76  E-value=3.4e-08  Score=81.20  Aligned_cols=95  Identities=21%  Similarity=0.245  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ...+..++..+.. .....|+|.-||.|+.+..++...+   .|++||++|..+..|+.|++-.|..+||+|++||+++.
T Consensus        79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen   79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            3444455444333 3778999999999999999998754   89999999999999999999999999999999999998


Q ss_pred             HHHHHhCCCCCceEEEEEcCC
Q 024097          184 LKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ...+...  ...+|+||..++
T Consensus       156 ~~~lq~~--K~~~~~vf~spp  174 (263)
T KOG2730|consen  156 ASKLKAD--KIKYDCVFLSPP  174 (263)
T ss_pred             HHHHhhh--hheeeeeecCCC
Confidence            7665321  245789998765

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.73  E-value=1.3e-08  Score=84.32  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ...+.||.|+|.|..|..++..+  --+|..+|.++.+++.|++.+... .....++.+....++.|.      .++||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~------~~~YDl  125 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE------EGKYDL  125 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----------TT-EEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC------CCcEeE
Confidence            45799999999999998776433  358999999999999999876431 122356777767776654      479999


Q ss_pred             EEEcCC-----ccchHHHHHHHHccCCCCcEEEE-eCCCCCCc-ccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVI-DNVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       199 V~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi-~d~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                      |++--.     ..+...||++|...|+|||+|++ +|+...|. +.|+.. ...|+.. +....|.+..++..+
T Consensus       126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D-sSvTRs~-~~~~~lF~~AGl~~v  197 (218)
T PF05891_consen  126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED-SSVTRSD-EHFRELFKQAGLRLV  197 (218)
T ss_dssp             EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT-TEEEEEH-HHHHHHHHHCT-EEE
T ss_pred             EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc-CeeecCH-HHHHHHHHHcCCEEE
Confidence            997532     45578899999999999999999 55555554 333321 1122223 334444455555544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=3.1e-08  Score=76.34  Aligned_cols=79  Identities=16%  Similarity=0.262  Sum_probs=64.9

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ....++.++|+|||+|..+..++  .+....|+|+|++|++++++.+|.....++  +.+.++|..+....      .+.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~  114 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGI  114 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCe
Confidence            34578999999999999985554  344568999999999999999999887764  68999998875543      478


Q ss_pred             eEEEEEcCC
Q 024097          196 YDFAFVDAE  204 (272)
Q Consensus       196 fDlV~~d~~  204 (272)
                      ||.++++.+
T Consensus       115 fDtaviNpp  123 (185)
T KOG3420|consen  115 FDTAVINPP  123 (185)
T ss_pred             EeeEEecCC
Confidence            999999876

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=6.4e-07  Score=76.67  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=76.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .++....+-+-..+...++.+|||||+|.|..|..+++..   .+|+++|+++.+++..++.+.   ..++++++++|++
T Consensus        13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL   86 (259)
T COG0030          13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL   86 (259)
T ss_pred             ccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence            4555555555566666677899999999999999999974   489999999999999888764   3457999999998


Q ss_pred             HHH-HHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097          182 DSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       182 ~~~-~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      ... +.+      ..++.|+.+-+-.-...++.++.
T Consensus        87 k~d~~~l------~~~~~vVaNlPY~Isspii~kll  116 (259)
T COG0030          87 KFDFPSL------AQPYKVVANLPYNISSPILFKLL  116 (259)
T ss_pred             cCcchhh------cCCCEEEEcCCCcccHHHHHHHH
Confidence            742 221      16788888776444444555444

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.64  E-value=2.7e-07  Score=77.01  Aligned_cols=98  Identities=23%  Similarity=0.406  Sum_probs=81.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc-eEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-fDl  198 (272)
                      +++++|||+|.|.-++.+|-..| +.+||-+|.....+...++...+.+++ +++++++.+.+.-+.       .. ||+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-------~~~~D~  138 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-------KKQYDV  138 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-------cccCcE
Confidence            68999999999999999996666 677999999999999999988889987 499999999775432       23 999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |.+-+. .....+.+.+.+++++||.+++
T Consensus       139 vtsRAv-a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         139 VTSRAV-ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEeehc-cchHHHHHHHHHhcccCCcchh
Confidence            988764 3455678889999999998764

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.64  E-value=1.6e-07  Score=81.26  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH-HhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      +++|+=||+| --.+++.+++....+..|+++|+++++.+.+++.++ ..++..+++|+.+|..+...++      ..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl------~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL------KEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc------ccCC
Confidence            4699999999 456677777655446789999999999999999888 5677889999999997754333      6899


Q ss_pred             EEEEcCCcc----chHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKR----MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~----~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+.+-..    .-.+.++++.+.++||+.+++-
T Consensus       195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            999887644    6778999999999999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.64  E-value=1.4e-07  Score=82.22  Aligned_cols=99  Identities=15%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..++.|||+|||+|..+...+++-  ..+|+++|.| +|.+.|++.++.+++.+||+++.|...++.  +     +++.|
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-----PEk~D  245 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L-----PEKVD  245 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C-----chhcc
Confidence            467899999999999999888763  4689999986 689999999999999999999999987742  2     47899


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEE
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +|+...-     .+...+-+-.+.+.|+|.|.++
T Consensus       246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            9987643     2223333444569999999876

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.62  E-value=8e-08  Score=77.11  Aligned_cols=78  Identities=12%  Similarity=0.078  Sum_probs=60.9

Q ss_pred             EEEeCChhHHHHHHHHHHHhC--CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCC
Q 024097          148 VACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpg  222 (272)
                      +|+|+|++|++.|+++.+..+  ...+++++++|+.+. +.     .+++||+|++...   ..+....++++.++||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            589999999999987765322  234699999999764 22     2578999987654   346778999999999999


Q ss_pred             cEEEEeCCC
Q 024097          223 GIIVIDNVL  231 (272)
Q Consensus       223 G~lvi~d~~  231 (272)
                      |.+++.+..
T Consensus        75 G~l~i~d~~   83 (160)
T PLN02232         75 SRVSILDFN   83 (160)
T ss_pred             eEEEEEECC
Confidence            999987664

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.61  E-value=2.9e-07  Score=83.19  Aligned_cols=116  Identities=23%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHh-hc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097           97 RGSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~-~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      +.+..++++.+.+.|...+. ..  .+..|||+-||.|.+++.+|+..   .+|+|+|+++++++.|++|.+.+++. ++
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~  246 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NV  246 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SE
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cc
Confidence            35566778777766655443 22  22389999999999999999864   49999999999999999999999986 59


Q ss_pred             EEEEcChhHHHHHHHh---------CC-CCCceEEEEEcCCccchH-HHHHHHH
Q 024097          174 KIKHGLAADSLKALIL---------NG-EASSYDFAFVDAEKRMYQ-EYFELLL  216 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~---------~~-~~~~fDlV~~d~~~~~~~-~~l~~~~  216 (272)
                      +|+.+++.+....+..         .. ....+|+|++|++..... ..++.+.
T Consensus       247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~  300 (352)
T PF05958_consen  247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK  300 (352)
T ss_dssp             EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred             eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence            9999888664322210         00 123689999999855533 3444443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.54  E-value=4.1e-07  Score=79.00  Aligned_cols=120  Identities=12%  Similarity=0.125  Sum_probs=82.1

Q ss_pred             HHHHHHHHH-HHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-----CEEEE
Q 024097          105 PDQAQLLAM-LVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIK  176 (272)
Q Consensus       105 ~~~~~~l~~-l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~  176 (272)
                      .....++.. |+.  ..++..++++|||-|+-.+.+-++-  -+.++|+||.+-.++.|+++++...-..     .+.|+
T Consensus       100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~  177 (389)
T KOG1975|consen  100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI  177 (389)
T ss_pred             hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence            334444443 333  2467789999999999888776642  4689999999999999998887542211     36889


Q ss_pred             EcChhH-HHHHHHhCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEE
Q 024097          177 HGLAAD-SLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       177 ~~d~~~-~~~~~~~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+|... .+..+... .+.+||+|-+...       .....-++.++.+.|+|||+++-
T Consensus       178 ~~Dc~~~~l~d~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  178 AADCFKERLMDLLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             EeccchhHHHHhccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            898765 23333211 1234999954322       23355678999999999999985

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=3.2e-06  Score=69.76  Aligned_cols=101  Identities=20%  Similarity=0.208  Sum_probs=73.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  195 (272)
                      .++.+|+|+|+..|.|+..+++.++++++|+++|+.|-.           .. ..+.++++|+.+  ....+...-...+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence            467899999999999999999999877889999998731           12 248999998865  2333322222456


Q ss_pred             eEEEEEcCCc--------cc------hHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~--------~~------~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|+|++|...        .+      ....++.+...|+|||.+++-..
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            7999998753        11      12345555689999999998743

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.51  E-value=6.8e-07  Score=75.97  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ++.+..-+..-+...++..|||||.|||..|..+.+.   +.+|+++|+++.|+....++++....+++.++++||....
T Consensus        43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT  119 (315)
T ss_pred             CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence            3555555555556678889999999999999999986   4699999999999999999996666668999999999764


Q ss_pred             HHHHHhCCCCCceEEEEEcCC
Q 024097          184 LKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .        ...||.++.+-+
T Consensus       120 d--------~P~fd~cVsNlP  132 (315)
T KOG0820|consen  120 D--------LPRFDGCVSNLP  132 (315)
T ss_pred             C--------CcccceeeccCC
Confidence            2        256899987654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.51  E-value=7.3e-07  Score=75.74  Aligned_cols=148  Identities=13%  Similarity=0.113  Sum_probs=94.4

Q ss_pred             CCCCCCCHHHHHHHHHHH-----hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC
Q 024097           98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~-----~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~  172 (272)
                      +.....+..+.+-+....     ...+..++||||+|.|..|..++..+.   +|+++|.|+.|..    ++++.|.   
T Consensus        68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~---  137 (265)
T PF05219_consen   68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF---  137 (265)
T ss_pred             CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence            344466666554444433     222567899999999999999998876   7999999998854    4444453   


Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC-CCCcc-------cCCc-
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL-WHGKV-------ADQM-  240 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~-~~g~~-------~~~~-  240 (272)
                       +++.  ..+...      .+.+||+|.+-..   .......++.+++.|+|+|.+++.-++ |.-.|       ..|. 
T Consensus       138 -~vl~--~~~w~~------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e  208 (265)
T PF05219_consen  138 -TVLD--IDDWQQ------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE  208 (265)
T ss_pred             -eEEe--hhhhhc------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh
Confidence             3332  222211      1468999987543   344667899999999999999987655 22111       1121 


Q ss_pred             ----CCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          241 ----VNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       241 ----~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                          ........+..|. .+..--+|+..
T Consensus       209 ~l~~~g~~~E~~v~~l~-~v~~p~GF~v~  236 (265)
T PF05219_consen  209 LLPVKGATFEEQVSSLV-NVFEPAGFEVE  236 (265)
T ss_pred             hcCCCCCcHHHHHHHHH-HHHHhcCCEEE
Confidence                1222344677777 55566677654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.51  E-value=1.9e-06  Score=76.13  Aligned_cols=106  Identities=20%  Similarity=0.301  Sum_probs=84.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH--HHHhC---C-CCCEEEEEcChhHHHHHHHhCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG---V-SHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~~---~-~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ...++||-+|.|.|.....+.+. |.-.+++-+|.+|+|++.++++  ++..+   + +.|++++..|+..++..-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            35579999999999999888874 5467999999999999999843  32222   1 358999999999988764    


Q ss_pred             CCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                       .+.||.|++|-..++        ..+|+..+.+.|+++|.+|+..
T Consensus       363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence             579999999865322        3567888899999999999863

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.50  E-value=5.4e-07  Score=78.73  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=72.7

Q ss_pred             CCCEEEEEcCccCHHHHH----HHHHCC---CCcEEEEEeCChhHHHHHHHHH------------------HHh------
Q 024097          119 GAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ERA------  167 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~~------  167 (272)
                      ++-+|+-.||.+|--.-.    +.+..+   .+.+|+|+|+|+.+++.|++-.                  ...      
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            346999999999974433    333322   1358999999999999987641                  100      


Q ss_pred             ------CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          168 ------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       168 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                            .+..+|+|...|..+....     ..+.||+||+-..     .......++.+.+.|+|||+|++..
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                  0224567777777652111     1378999998543     3456778999999999999999854

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.49  E-value=1e-06  Score=73.42  Aligned_cols=98  Identities=15%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEc
Q 024097          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  202 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d  202 (272)
                      |.||||-.|+...++++.-. ..+++++|+++..++.|+++++..++.+++++..+|.++.++.      .+..|.|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence            68999999999999998643 4589999999999999999999999999999999999887653      1337888875


Q ss_pred             CC-ccchHHHHHHHHccCCCCcEEEE
Q 024097          203 AE-KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       203 ~~-~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +- -....++++.....++....+|+
T Consensus        74 GMGG~lI~~ILe~~~~~~~~~~~lIL   99 (205)
T PF04816_consen   74 GMGGELIIEILEAGPEKLSSAKRLIL   99 (205)
T ss_dssp             EE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred             cCCHHHHHHHHHhhHHHhccCCeEEE
Confidence            43 22233444444444433333443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.46  E-value=1.7e-06  Score=84.99  Aligned_cols=100  Identities=14%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             CCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHC---CC---------------------------------
Q 024097          101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE---------------------------------  143 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~---~~---------------------------------  143 (272)
                      .++.+..+.-|..+... .++..++|-+||+|.+.+..|...   ++                                 
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            35666676666666655 457899999999999998876531   11                                 


Q ss_pred             -----CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097          144 -----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       144 -----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                           ..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+.....    ..++||+|+++.+
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP  312 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP  312 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence                 23799999999999999999999999888999999998753211    1257999999976

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.43  E-value=1.9e-06  Score=76.59  Aligned_cols=124  Identities=16%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC------CCCcEEEEEeCChhHHHHHHHHHHHhCCCC-C
Q 024097          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSH-K  172 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~  172 (272)
                      ..-.......++..++...++.+|+|-.||+|.+...+.+.+      ....+++|+|+++.++..|+-++.-.+... .
T Consensus        27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~  106 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN  106 (311)
T ss_dssp             GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred             eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence            345667888999999988888899999999999998888753      125799999999999999998876665543 2


Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEE
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+..+|........    ....||+|+.+.+..                        ....+++.+.+.|++||.+++
T Consensus       107 ~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  107 INIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             CEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            468888876532210    136899999876511                        012478889999999997544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.42  E-value=5e-06  Score=71.86  Aligned_cols=104  Identities=15%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             CCEEEEEcCccCH----HHHHHHHHCCC----CcEEEEEeCChhHHHHHHHHHHH-----hC------------------
Q 024097          120 AQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AG------------------  168 (272)
Q Consensus       120 ~~~VLEiG~G~G~----~~~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~~------------------  168 (272)
                      +-+|.-.||+||-    .++.+.+..+.    ..+|+|+|+|..+++.|+.-.=.     .+                  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6799999999996    44445555542    46899999999999988642100     01                  


Q ss_pred             -----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       169 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                           +...|.|...|..+..+ .     .+.||+|||-..     .......++..+..|+|||+|++-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                 11346666666655332 2     478999998754     4556778999999999999999853

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.41  E-value=4.8e-07  Score=73.97  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~~  194 (272)
                      ++.+|||+||++|+++..+++...+.++|+|+|+.+.           ... ..+.++.+|..+.  ...+....  ..+
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            4589999999999999999998744689999999876           111 2466666665431  12221110  126


Q ss_pred             ceEEEEEcCCc--------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~--------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++|...              .-....+..+.+.|+|||.+|+-
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            89999999831              01223344556889999998875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.7e-06  Score=79.64  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=91.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097           98 GSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      +...+++...++.+...+..    ..++.++|+.||||.+++.+++..   .+|+|||++++.++.|++|...+|.+ +.
T Consensus       358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na  433 (534)
T KOG2187|consen  358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NA  433 (534)
T ss_pred             chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ce
Confidence            44457777777777776654    456789999999999999999865   49999999999999999999999997 59


Q ss_pred             EEEEcChhHHHHHHHhCCCCCceE-EEEEcCCccch-HHHHHHHHccCCCCcEEEE
Q 024097          174 KIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMY-QEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fD-lV~~d~~~~~~-~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++|-+.+..+.+..... ++-+ ++++|.+.... ..+++.+.+.-++.-.+.+
T Consensus       434 ~Fi~gqaE~~~~sl~~~~~-~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv  488 (534)
T KOG2187|consen  434 TFIVGQAEDLFPSLLTPCC-DSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV  488 (534)
T ss_pred             eeeecchhhccchhcccCC-CCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence            9999988887777654321 2334 66778775443 3445555544445554444

>PRK10742 putative methyltransferase; Provisional

Probab=98.41  E-value=2.6e-06  Score=72.30  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=72.6

Q ss_pred             HHHHHHHhhcCCC--EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh------C--CCCCEEEEEc
Q 024097          109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG  178 (272)
Q Consensus       109 ~~l~~l~~~~~~~--~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------~--~~~~v~~~~~  178 (272)
                      +.+...+...++.  +|||.-+|+|..++.++..   +++|+++|.++......++++++.      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4555556556666  9999999999999999975   678999999999999999999885      2  2257999999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      |+.+.+...     ..+||+||+|..
T Consensus       153 da~~~L~~~-----~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI-----TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC-----CCCCcEEEECCC
Confidence            999988764     457999999975

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.39  E-value=2.9e-06  Score=70.73  Aligned_cols=112  Identities=21%  Similarity=0.178  Sum_probs=68.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-------hCC-CCCEEEEEcChhHHH-
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-------AGV-SHKVKIKHGLAADSL-  184 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~~-~~~v~~~~~d~~~~~-  184 (272)
                      .+...+....+|||||.|......+...+ -.+.+|||+.+...+.|+...+.       .|. ..++++.++|+.+.. 
T Consensus        37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred             HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence            34455678999999999999888886654 44699999999998887654432       233 346889999987632 


Q ss_pred             -HHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          185 -KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       185 -~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                       ...     -...|+||++..  .+.....+......||+|..||--.-+
T Consensus       116 ~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  116 VKDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             HHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             Hhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence             222     135799999865  334445567777889999888764433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.39  E-value=1.9e-06  Score=72.91  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHH-HHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++++|||+|||+|.++..+++. + ..+|+++|++++++.. .+++       .++. +...|+......... .+-..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~-~d~~~  143 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF-PDFAT  143 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC-CCcee
Confidence            46779999999999999999986 3 4689999999987754 2221       1222 222233211110000 01246


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++|+...     ..+..+.++|++ |.+++
T Consensus       144 ~DvsfiS~~-----~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       144 FDVSFISLI-----SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeEEEeehH-----hHHHHHHHHhCc-CeEEE
Confidence            777776432     357788889999 76664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.34  E-value=4.6e-06  Score=74.86  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=94.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---C----------------------------Cc-----
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---E----------------------------SG-----  145 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~---~----------------------------~~-----  145 (272)
                      .+.+..+.-|-.+..-.+...++|-=||+|.+.+..|...+   |                            .+     
T Consensus       174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~  253 (381)
T COG0116         174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE  253 (381)
T ss_pred             CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence            56677777777777777778999999999999998876542   1                            11     


Q ss_pred             --EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----------cchHHHH
Q 024097          146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYF  212 (272)
Q Consensus       146 --~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----------~~~~~~l  212 (272)
                        .++|+|+++.+++.|+.|.+.+|+.+.|+|.++|+.+.-+.      .+.+|+|+++.+-           .-|..+.
T Consensus       254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence              37899999999999999999999999999999999765432      1689999999761           1355666


Q ss_pred             HHHHccCCCCcEEEEe
Q 024097          213 ELLLQLIRVGGIIVID  228 (272)
Q Consensus       213 ~~~~~lLkpgG~lvi~  228 (272)
                      +.+.+.++.-+..|+.
T Consensus       328 ~~lk~~~~~ws~~v~t  343 (381)
T COG0116         328 RTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCceEEEE
Confidence            6667888887777764

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.33  E-value=8.8e-06  Score=67.03  Aligned_cols=107  Identities=19%  Similarity=0.176  Sum_probs=83.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+||+||-|-|...-.+-++-|  .+-+-||..|+.++..++.-  ....++|.+..|...+.++.+.    ++.||
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~----d~~FD  171 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP----DKHFD  171 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc----ccCcc
Confidence            5788999999999988877766533  46678999999987776532  2224678899999988888774    46799


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      -|+-|.-   -++...+.+.+.++|||+|++-+-|.+-
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            9999876   3445678889999999999998876553

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.33  E-value=9.3e-07  Score=71.19  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      ..+.|+|+|+|..+...+++.   -+|+++|.+|...++|++|+.-.|.. +++++.+|+.+..        -+..|.|+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence            689999999999999888763   49999999999999999998777765 5999999998752        24678887


Q ss_pred             EcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          201 VDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +..-     .+.....+..+.+.||..+.++-..+.
T Consensus       102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076         102 CEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             HHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            6432     334556788888899999988765544

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.33  E-value=4.9e-07  Score=74.83  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCccCHHHHHH----HHHCC----CCcEEEEEeCChhHHHHHHHH--------------HHHh-----C---
Q 024097          119 GAQRCIEVGVYTGYSSLAI----ALVLP----ESGCLVACERDARSLEVAKKY--------------YERA-----G---  168 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~l----a~~~~----~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----~---  168 (272)
                      ++-+|+-.||++|--+-.+    .+..+    ...+|+|+|+|+.+++.|++-              .++.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4569999999999744333    33111    135899999999999988652              1110     1   


Q ss_pred             -----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       169 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                           +.++|+|...|..+..+.      .+.||+||+-..     .......++.+.+.|+|||+|++-..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence                 125789999988872222      479999999765     34457789999999999999998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.29  E-value=1.8e-06  Score=66.96  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=73.0

Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC------------ccchHHHHH
Q 024097          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE  213 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~------------~~~~~~~l~  213 (272)
                      +|+++|+.+++++.++++++..++.+++++++..-......+ +   .+++|+++.+-.            .......++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-~---~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-P---EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-c---cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            689999999999999999999999889999988765543333 1   248999886522            223556789


Q ss_pred             HHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          214 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       214 ~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                      .+.++|+|||+|++-  .+.|....    .....++.+|.+.|- ...|.+.
T Consensus        77 ~al~lL~~gG~i~iv--~Y~GH~gG----~eE~~av~~~~~~L~-~~~~~V~  121 (140)
T PF06962_consen   77 AALELLKPGGIITIV--VYPGHPGG----KEESEAVEEFLASLD-QKEFNVL  121 (140)
T ss_dssp             HHHHHEEEEEEEEEE--E--STCHH----HHHHHHHHHHHHTS--TTTEEEE
T ss_pred             HHHHhhccCCEEEEE--EeCCCCCC----HHHHHHHHHHHHhCC-cceEEEE
Confidence            999999999999984  66664321    234667888877762 2245443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.29  E-value=2e-05  Score=61.85  Aligned_cols=90  Identities=20%  Similarity=0.244  Sum_probs=64.5

Q ss_pred             HHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhC--CCCCEEEEEc
Q 024097          108 AQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHG  178 (272)
Q Consensus       108 ~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~  178 (272)
                      .+++..+...    .+..+|+|+|||.|+.+..++..+   .++.+|+++|.++..++.+.+..+..+  +..++++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            3444554444    677899999999999999999833   236799999999999999998888777  4456677766


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      +..+...       ....++++--+.
T Consensus        90 ~~~~~~~-------~~~~~~~vgLHa  108 (141)
T PF13679_consen   90 DIADESS-------SDPPDILVGLHA  108 (141)
T ss_pred             chhhhcc-------cCCCeEEEEeec
Confidence            5543221       245666665444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.26  E-value=1.6e-05  Score=69.99  Aligned_cols=84  Identities=24%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++..++|.-+|.|+.+..+++.++ .++|+|+|.++.+++.+++.++.  ..+++++++++..+....+... +..++
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l~~~-~~~~v   93 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHLDEL-LVTKI   93 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHHHhc-CCCcc
Confidence            34667999999999999999999987 49999999999999999998864  3468999999998765544222 23579


Q ss_pred             EEEEEcCC
Q 024097          197 DFAFVDAE  204 (272)
Q Consensus       197 DlV~~d~~  204 (272)
                      |.|+.|-.
T Consensus        94 DgIl~DLG  101 (305)
T TIGR00006        94 DGILVDLG  101 (305)
T ss_pred             cEEEEecc
Confidence            99998855

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.26  E-value=8.6e-06  Score=70.11  Aligned_cols=142  Identities=19%  Similarity=0.249  Sum_probs=108.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .+.++++||-||-|-|......+++ +.-..++-+|++...++..++.+...  |. ..++.+..||...++....    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            4567899999999999988887776 43568999999999999999988754  33 3579999999988877652    


Q ss_pred             CCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcC-CCHhhHHHHHHHHHhhhCCCeEE
Q 024097          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV-NDAKTISIRNFNKNLMEDERVSI  264 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~  264 (272)
                      .++||+|+.|....       -...+++.+.+.||+||+++...        +..| +-....-+++|...+...-.|-.
T Consensus       193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~--------ec~wl~~~~i~e~r~~~~~~f~~t~ya~  264 (337)
T KOG1562|consen  193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG--------ECMWLHLDYIKEGRSFCYVIFDLTAYAI  264 (337)
T ss_pred             cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec--------ceehHHHHHHHHHHHhHHHhcCccceee
Confidence            58999999886522       24567888899999999998741        2122 23344568888888888888888


Q ss_pred             EEeecC
Q 024097          265 SMKEVQ  270 (272)
Q Consensus       265 ~~lp~~  270 (272)
                      +.+|+.
T Consensus       265 ttvPTy  270 (337)
T KOG1562|consen  265 TTVPTY  270 (337)
T ss_pred             ecCCCC
Confidence            888864

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.24  E-value=2.2e-05  Score=69.78  Aligned_cols=109  Identities=14%  Similarity=0.014  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC---CcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ++..++|+|||.|.-+..+++++.+   ..+++++|+|.++++.+.+++....... .+.-+.+|..+.+..+.......
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            4558999999999999888887642   3579999999999999999887333332 24448899877654432110123


Q ss_pred             ceEEEEEcC-C-----ccchHHHHHHHHc-cCCCCcEEEE
Q 024097          195 SYDFAFVDA-E-----KRMYQEYFELLLQ-LIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~-~-----~~~~~~~l~~~~~-lLkpgG~lvi  227 (272)
                      ...+++.-+ .     ......+++.+.+ .|+|||.+++
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            346665433 2     4446678999998 9999999887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.24  E-value=8e-06  Score=77.76  Aligned_cols=84  Identities=13%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-------CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ...+|||.|||+|.+...+++.++.       ..+++++|+++..+..++.++...+. ..+.+..+|.......... .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~-~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE-S  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc-c
Confidence            3468999999999999999887631       24789999999999999999876652 2356666665532111100 0


Q ss_pred             CCCceEEEEEcCC
Q 024097          192 EASSYDFAFVDAE  204 (272)
Q Consensus       192 ~~~~fDlV~~d~~  204 (272)
                      ..+.||+|+.+.+
T Consensus       109 ~~~~fD~IIgNPP  121 (524)
T TIGR02987       109 YLDLFDIVITNPP  121 (524)
T ss_pred             ccCcccEEEeCCC
Confidence            1358999998765

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.23  E-value=2.9e-06  Score=69.89  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      +++.| ...++..+....+...|.|+|||.+..+.    .++.+.+|..+|+...              .+  .+..+|.
T Consensus        55 WP~nP-vd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~--------------n~--~Vtacdi  113 (219)
T PF05148_consen   55 WPVNP-VDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP--------------NP--RVTACDI  113 (219)
T ss_dssp             SSS-H-HHHHHHHHCTS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S--------------ST--TEEES-T
T ss_pred             CCCCc-HHHHHHHHHhcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC--------------CC--CEEEecC
Confidence            45555 44566666665566799999999998774    3443457999998642              12  3556777


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhh
Q 024097          181 ADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME  258 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  258 (272)
                      ... |-     ++++.|+++..-.  -.++..++.++.|+||+||.+.|.++...  ..          .++.|.+.+..
T Consensus       114 a~v-PL-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR--f~----------~~~~F~~~~~~  175 (219)
T PF05148_consen  114 ANV-PL-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR--FE----------NVKQFIKALKK  175 (219)
T ss_dssp             TS--S-------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG---S-----------HHHHHHHHHC
T ss_pred             ccC-cC-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc--Cc----------CHHHHHHHHHH
Confidence            442 21     2689999886544  45788999999999999999999876532  11          25778777653


Q ss_pred             CCCeE
Q 024097          259 DERVS  263 (272)
Q Consensus       259 ~~~~~  263 (272)
                       =+|.
T Consensus       176 -~GF~  179 (219)
T PF05148_consen  176 -LGFK  179 (219)
T ss_dssp             -TTEE
T ss_pred             -CCCe
Confidence             2444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.20  E-value=1.7e-05  Score=70.09  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=76.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      -...+|+|.|.|..+..+...+|   ++-+++.+...+..++.++. .|    |+.+.||.....|         +-|+|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI  240 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI  240 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence            37899999999999999998776   68999999888877777764 33    7888888876533         34688


Q ss_pred             EEc-----CCccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          200 FVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       200 ~~d-----~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      |+-     -..++..++|++|++.|+|||.|++-+...+
T Consensus       241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            853     2255678899999999999998888666544

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.20  E-value=1.3e-05  Score=66.76  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=74.5

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +...++.+||-+|+.+|.....++...++.|.|+++|.++...+..-...++   ..++-.+.+|+..-....   .--+
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~---~lv~  142 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR---MLVE  142 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT---TTS-
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh---cccc
Confidence            3456788999999999999999999998899999999999665443332222   236888999986421110   0136


Q ss_pred             ceEEEEEcCCccchHH-HHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~-~l~~~~~lLkpgG~lvi~  228 (272)
                      ..|+||.|-..++..+ +..++...||+||.+++-
T Consensus       143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            8999999988666544 456677899999998873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.19  E-value=5.2e-06  Score=70.94  Aligned_cols=140  Identities=21%  Similarity=0.295  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHC---C-CCcEEEEEeCCh--------------------
Q 024097          103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA--------------------  154 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~---~-~~~~v~~iD~s~--------------------  154 (272)
                      ++......|..++..    .-+..|+|+||..|.+++.++..+   . .+-+++++|--+                    
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            444444444444432    345689999999999887665432   2 234688888422                    


Q ss_pred             ------hHHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-ccchHHHHHHHHccCCCCcEEE
Q 024097          155 ------RSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       155 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                            -..+..++++.+.++ .++++++.|.+.+.++..    ..+++-++.+|.+ -+.....|+.+++.|.|||+|+
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi  209 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIII  209 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEE
Confidence                  123445555555554 458999999998877643    1367888888887 4446678999999999999999


Q ss_pred             EeCCCCCCcccCCcCCCHhhHHHHHHHHHh
Q 024097          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNL  256 (272)
Q Consensus       227 i~d~~~~g~~~~~~~~~~~~~~~~~~~~~l  256 (272)
                      +||..++|          -.+|+.+|.+..
T Consensus       210 ~DDY~~~g----------cr~AvdeF~~~~  229 (248)
T PF05711_consen  210 FDDYGHPG----------CRKAVDEFRAEH  229 (248)
T ss_dssp             ESSTTTHH----------HHHHHHHHHHHT
T ss_pred             EeCCCChH----------HHHHHHHHHHHc
Confidence            99987633          246788886653

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.15  E-value=7.6e-06  Score=63.96  Aligned_cols=59  Identities=22%  Similarity=0.251  Sum_probs=50.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      .++|||||.|..+.++++..+ +++++++|+++.+.+.++++++.++.. ++++++....+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999999999998765 579999999999999999999888775 48888765543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.10  E-value=1.4e-05  Score=71.84  Aligned_cols=110  Identities=19%  Similarity=0.298  Sum_probs=87.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH-HHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~  194 (272)
                      ...++.+|||..+..|.-|.++|..+...|.|++.|.+...++..+.++.+.|+.+ ..+...|..+.. ..+     .+
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~-----~~  311 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF-----PG  311 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc-----Cc
Confidence            34577899999999999999999998878999999999999999999999999875 556666665432 111     34


Q ss_pred             ceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +||-|++|++...                         ..+.+..+..++++||+||...+.
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            8999999875211                         345677778999999999987553

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.09  E-value=1.4e-05  Score=69.37  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ..+++...+.+...+...++..|||||+|.|.+|..+++..   .+++++|+++.+.+..++.+.   ...+++++.+|+
T Consensus        12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~   85 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF   85 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred             eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence            35677777777777777788999999999999999999985   599999999999998888764   345799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHc
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ  217 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~  217 (272)
                      .++......   ......|+.+-+..-...++..+..
T Consensus        86 l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~  119 (262)
T PF00398_consen   86 LKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLE  119 (262)
T ss_dssp             TTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred             hccccHHhh---cCCceEEEEEecccchHHHHHHHhh
Confidence            874221000   1345667766555444456666654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.06  E-value=0.00013  Score=59.19  Aligned_cols=148  Identities=16%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .-+|..-..++.++-..+|..|+|+|.-.|++++++|...   +...+|+++|++-..+.-+...      ..+|.|+.|
T Consensus        52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~eg  125 (237)
T COG3510          52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEG  125 (237)
T ss_pred             cCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeC
Confidence            3456677777888888899999999999999999998753   3346899999987654332211      347999999


Q ss_pred             ChhHHH--HHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCC--c-CCCHhhHHHHH
Q 024097          179 LAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ--M-VNDAKTISIRN  251 (272)
Q Consensus       179 d~~~~~--~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~--~-~~~~~~~~~~~  251 (272)
                      +..+..  .+.......-+-=+|+.|..  ..+...-++...++|.-|-++++.|....+.....  . ..+....++++
T Consensus       126 ss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~  205 (237)
T COG3510         126 SSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEA  205 (237)
T ss_pred             CCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHH
Confidence            887621  11111011112224445544  44456667777899999999999998887765422  1 12345667777


Q ss_pred             HHHH
Q 024097          252 FNKN  255 (272)
Q Consensus       252 ~~~~  255 (272)
                      |++.
T Consensus       206 ylr~  209 (237)
T COG3510         206 YLRE  209 (237)
T ss_pred             HHHh
Confidence            7654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.05  E-value=1.8e-05  Score=72.03  Aligned_cols=107  Identities=17%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++-+|||.=+|+|.=++.++..++...+|+.-|+|+++++..++|++.+++.+ ++++.+.|+...+...     ...||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCC
Confidence            34589999999999999999987645699999999999999999999999987 7999999998866421     57899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|=+|.- .....|++.+.+.++.||+|.+....
T Consensus       124 ~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  124 VIDLDPF-GSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             EEEE--S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             EEEeCCC-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence            9988864 34557999999999999999996543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.01  E-value=5.9e-05  Score=62.58  Aligned_cols=95  Identities=17%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+.++.||||-.|+...++.+..+ ...+++.|+++..++.|.++++++++.+++++..+|.+..+..      +..+|.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~   88 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDV   88 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCE
Confidence            345699999999999999998765 6789999999999999999999999999999999999765542      357999


Q ss_pred             EEEcCC-ccchHHHHHHHHccCC
Q 024097          199 AFVDAE-KRMYQEYFELLLQLIR  220 (272)
Q Consensus       199 V~~d~~-~~~~~~~l~~~~~lLk  220 (272)
                      |++.+- -.-...++++-.+.|+
T Consensus        89 ivIAGMGG~lI~~ILee~~~~l~  111 (226)
T COG2384          89 IVIAGMGGTLIREILEEGKEKLK  111 (226)
T ss_pred             EEEeCCcHHHHHHHHHHhhhhhc
Confidence            988654 2224445555554444

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.93  E-value=4.1e-05  Score=66.81  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..+++|||+|+|.|..+..+.+.++.-.+++++|.|+.+.+.++..++........... .+.   ....   .+....|
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~---~~~~---~~~~~~D  104 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVL---YRDF---LPFPPDD  104 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhh---hccc---ccCCCCc
Confidence            46789999999999877777777774568999999999999999877543221111111 111   1000   0123459


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++...     ......+++.+++.+.+  +||+
T Consensus       105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl  137 (274)
T PF09243_consen  105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVL  137 (274)
T ss_pred             EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence            9987643     23345567777776665  4444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.92  E-value=3.2e-05  Score=67.66  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=48.8

Q ss_pred             CEEEEEcCccCHH-HHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcChhH-HHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~-~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~~~~~~~~~~fD  197 (272)
                      -++||||||.-.. .+.-++. . +.+++|+|+++..++.|+++++.+ ++.++|+++...-.. ++..+..  ..+.||
T Consensus       104 v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~d  179 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFD  179 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EE
T ss_pred             eEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceee
Confidence            4799999987644 3333333 2 689999999999999999999999 999999998664322 2221111  136899


Q ss_pred             EEEEcCCc
Q 024097          198 FAFVDAEK  205 (272)
Q Consensus       198 lV~~d~~~  205 (272)
                      +.+++.+.
T Consensus       180 ftmCNPPF  187 (299)
T PF05971_consen  180 FTMCNPPF  187 (299)
T ss_dssp             EEEE----
T ss_pred             EEecCCcc
Confidence            99998773

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.91  E-value=8.6e-05  Score=65.36  Aligned_cols=87  Identities=22%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++..++|.-.|.|+.+..+++.+++ ++++|+|.++++++.|++++.  ...+++.++++++.+....+........+
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~--~~~~r~~~~~~~F~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLK--KFDDRFIFIHGNFSNLDEYLKELNGINKV   94 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTC--CCCTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHh--hccceEEEEeccHHHHHHHHHHccCCCcc
Confidence            456679999999999999999999985 999999999999999988774  34678999999998765555433134689


Q ss_pred             EEEEEcCCcc
Q 024097          197 DFAFVDAEKR  206 (272)
Q Consensus       197 DlV~~d~~~~  206 (272)
                      |.|++|...+
T Consensus        95 dgiL~DLGvS  104 (310)
T PF01795_consen   95 DGILFDLGVS  104 (310)
T ss_dssp             EEEEEE-S--
T ss_pred             CEEEEccccC
Confidence            9999987643

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.88  E-value=0.00026  Score=61.50  Aligned_cols=86  Identities=26%  Similarity=0.258  Sum_probs=71.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++...+|.--|.|+.+..+++.+++.++++++|.++.+++.|++.+...+  +|++++++++.+....+...+ .++
T Consensus        20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~   96 (314)
T COG0275          20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGK   96 (314)
T ss_pred             ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCc
Confidence            34566799999999999999999999888899999999999999999886544  689999999877655543322 468


Q ss_pred             eEEEEEcCC
Q 024097          196 YDFAFVDAE  204 (272)
Q Consensus       196 fDlV~~d~~  204 (272)
                      +|-|+.|-.
T Consensus        97 vDGiL~DLG  105 (314)
T COG0275          97 VDGILLDLG  105 (314)
T ss_pred             eeEEEEecc
Confidence            999998855

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.86  E-value=8.8e-05  Score=62.90  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..| ...++..+-.......|-|+|||-+-++.    .  ...+|+++|+.+              .  +-+++.+|...
T Consensus       165 ~nP-ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~--~~~V~~cDm~~  221 (325)
T KOG3045|consen  165 ENP-LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V--NERVIACDMRN  221 (325)
T ss_pred             CCh-HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C--CCceeeccccC
Confidence            344 34566666555566789999999987654    2  235799999853              2  23556677765


Q ss_pred             HHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      . |-     ++++.|+++....  ..+...++.++.++|++||.+.|..+.
T Consensus       222 v-Pl-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  222 V-PL-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             C-cC-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence            2 21     2689999875433  456788999999999999999998764

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=6.7e-05  Score=59.19  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=70.4

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH-HHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~  193 (272)
                      ....+++|||+|.| +|..++.+|...+ ...|..+|-+++.++-.++....+....--...   +.... .....+.+.
T Consensus        26 n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~---vlrw~~~~aqsq~eq  101 (201)
T KOG3201|consen   26 NKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC---VLRWLIWGAQSQQEQ  101 (201)
T ss_pred             hHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceeh---hhHHHHhhhHHHHhh
Confidence            44567899999988 6778888888776 678999999999998888765443211101111   11111 111111124


Q ss_pred             CceEEEEEcC-C--ccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDA-E--KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~-~--~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..||+|++.. .  .+......+.+..+|+|.|.-++-
T Consensus       102 ~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen  102 HTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             CcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            6999998642 2  444566778888999999985553

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.83  E-value=0.0002  Score=54.97  Aligned_cols=105  Identities=20%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH-HHHHHhCCCC-CceEEEE
Q 024097          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF  200 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~-~~fDlV~  200 (272)
                      ++|+|||+|..+ .++...+....++++|+++.++..++..... .....+.+..++.... .+.     .. ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence            999999999987 4444433224899999999999885544432 2111167777776542 221     12 3799994


Q ss_pred             EcCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          201 VDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       201 ~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ......  .....+..+.+.++|+|.+++.......
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            332211  1467889999999999999987766444

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.82  E-value=1.6e-05  Score=73.27  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH-HhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ..+||||||+|.++.+|.++     .|+++-..+.-...++..+. +.|+..-+.+.   +..-++..     ++.||+|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp-----~~~fDmv  185 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLPFP-----SNAFDMV  185 (506)
T ss_pred             EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcCcchhhhhh---ccccccCC-----ccchhhh
Confidence            57899999999999998874     34444333321111121121 13433211111   12223332     6899999


Q ss_pred             EEcCC----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          200 FVDAE----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       200 ~~d~~----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      -+..-    ...-.-++-++-|+|||||+++....-
T Consensus       186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            75432    222233677788999999999986443

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.79  E-value=0.0025  Score=53.88  Aligned_cols=97  Identities=20%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+++||=+|=+- ..+++++.... ..+|+.+|+++..++..++..++.|+.  ++.++.|..+.+|.-.    .++||+
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD~  115 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFDV  115 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BSE
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCCE
Confidence            579999999554 45555555433 479999999999999999999999986  9999999988766421    489999


Q ss_pred             EEEcCC--ccchHHHHHHHHccCCCCc
Q 024097          199 AFVDAE--KRMYQEYFELLLQLIRVGG  223 (272)
Q Consensus       199 V~~d~~--~~~~~~~l~~~~~lLkpgG  223 (272)
                      +|.|.+  .....-|+......||.-|
T Consensus       116 f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  116 FFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             EEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            999987  4557778899988888766

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.77  E-value=8.7e-05  Score=60.44  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (272)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  185 (272)
                      ..++++...-...++++|||+|+|+|..++..++.-  ...|++.|+.|-.....+-|.+.++..  +.+...|...  +
T Consensus        66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~  139 (218)
T COG3897          66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S  139 (218)
T ss_pred             HHHHHHhcCccccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C
Confidence            344444444455678999999999999999888763  358999999998888888888877764  7888777644  1


Q ss_pred             HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                             +..||+++....   +......+. +...|+..|..|+
T Consensus       140 -------~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         140 -------PPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             -------CcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence                   578999986432   333333444 4444555454444

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.75  E-value=0.00015  Score=59.31  Aligned_cols=105  Identities=16%  Similarity=0.200  Sum_probs=75.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC------CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      -.+.|||||.|...+.++..+| +.-+.|+||-....++.++++....-      -.++.+...++...++.+...|. -
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq-L  139 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ-L  139 (249)
T ss_pred             ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc-c
Confidence            4689999999999999999988 78899999999999999988887541      23578888888888877654331 1


Q ss_pred             ceEEEEE-cCC----cc----chHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFV-DAE----KR----MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~-d~~----~~----~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +-++++. |..    ++    -...++.+..-+|++||.+..
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence            1122222 111    00    134567777789999998875

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.75  E-value=0.00034  Score=56.60  Aligned_cols=104  Identities=18%  Similarity=0.222  Sum_probs=69.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHH--HHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~~~~~~~  194 (272)
                      .++.+|||+||..|.|+.-.-+...+.+.|.|||+-.         +  .... -++++.+ |..+.  ...+.+.-..-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPE-GATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCCC-CcccccccccCCHHHHHHHHHhCCCC
Confidence            4678999999999999999999987799999999853         1  1222 2556665 54442  12222222346


Q ss_pred             ceEEEEEcCCc-------cchHHHHHHH-------HccCCCCcEEEEeCCCCCCc
Q 024097          195 SYDFAFVDAEK-------RMYQEYFELL-------LQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       195 ~fDlV~~d~~~-------~~~~~~l~~~-------~~lLkpgG~lvi~d~~~~g~  235 (272)
                      +.|+|+.|..+       .+....++.|       ...++|+|.+++-  +|.|.
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~  188 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS  188 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence            89999998541       1222333333       4778999999986  67774

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.72  E-value=0.00036  Score=60.04  Aligned_cols=164  Identities=14%  Similarity=0.150  Sum_probs=84.3

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHH----HHHhhcCCCEEEEEcCc--cCHHHHHHHHHC
Q 024097           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA----MLVQILGAQRCIEVGVY--TGYSSLAIALVL  141 (272)
Q Consensus        68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~~~~~~VLEiG~G--~G~~~~~la~~~  141 (272)
                      ...++++|+..-....+.=+++-+...........+...--.|+.    .++....-...||||||  |-..+..+++..
T Consensus        13 ~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~   92 (267)
T PF04672_consen   13 SPARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRV   92 (267)
T ss_dssp             -HHHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH
T ss_pred             cHHHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhh
Confidence            345788888765443333233322221111000111122223333    33333356789999999  344677788877


Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH---hCC--C-CCceEEEEEc-----CCccchHH
Q 024097          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI---LNG--E-ASSYDFAFVD-----AEKRMYQE  210 (272)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~--~-~~~fDlV~~d-----~~~~~~~~  210 (272)
                      .++++|+.+|.+|-.+..++..+....- .+..++++|..+...-+.   ..+  + +.+.=++++.     .+..+...
T Consensus        93 ~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~  171 (267)
T PF04672_consen   93 APDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAG  171 (267)
T ss_dssp             -TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHH
T ss_pred             CCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHH
Confidence            7799999999999999999988854432 248999999987422220   000  1 1233333332     12345778


Q ss_pred             HHHHHHccCCCCcEEEEeCCCC
Q 024097          211 YFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       211 ~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .+..+...|.||.+|++.....
T Consensus       172 iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  172 IVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HHHHHHCCS-TT-EEEEEEEB-
T ss_pred             HHHHHHHhCCCCceEEEEecCC
Confidence            8999999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00042  Score=56.81  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          103 VSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       103 ~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      -+...+.++.-+-  ...++.+||=+|+.+|.....++.-.+ .+.++++|.++...+..-...+   -..++-.+.+|+
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA  133 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDA  133 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeeccc
Confidence            3444455555443  456789999999999999999999888 8899999999987654433332   234688888888


Q ss_pred             hHHHH--HHHhCCCCCceEEEEEcCCccchHH-HHHHHHccCCCCcEEEE
Q 024097          181 ADSLK--ALILNGEASSYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI  227 (272)
Q Consensus       181 ~~~~~--~~~~~~~~~~fDlV~~d~~~~~~~~-~l~~~~~lLkpgG~lvi  227 (272)
                      ..-..  .+     -+..|+||.|-..++..+ +..++...|++||.+++
T Consensus       134 ~~P~~Y~~~-----Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPEKYRHL-----VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcHHhhhh-----cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            64222  12     367999999988766555 45667889999996665

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00091  Score=56.29  Aligned_cols=99  Identities=14%  Similarity=0.084  Sum_probs=71.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~  195 (272)
                      ..+++.|||||+-||++|..+++.-  ..+|+++|..-..+..-      .....|+.... .|+....+...    .+.
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k------LR~d~rV~~~E~tN~r~l~~~~~----~~~  144 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK------LRNDPRVIVLERTNVRYLTPEDF----TEK  144 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh------HhcCCcEEEEecCChhhCCHHHc----ccC
Confidence            3478899999999999999999862  35899999987554321      12234555443 34443322211    347


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .|++++|...-.....+..+..++++++.++.
T Consensus       145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            89999999888888889999999999988775

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.63  E-value=8.7e-05  Score=68.26  Aligned_cols=116  Identities=21%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDl  198 (272)
                      +..+|-+|-|.|.....+...++ ..++++++++|++++.|++++....- .+..++..|..+.+....+.. ++..||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            45788889999999998888887 78999999999999999999854332 257788888888887776643 5678999


Q ss_pred             EEEcCCccc------------hHHHHHHHHccCCCCcEEEEeCCCCCCccc
Q 024097          199 AFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVA  237 (272)
Q Consensus       199 V~~d~~~~~------------~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~  237 (272)
                      +++|.+..+            ...++..+...|.|.|.++++-+-.+..+.
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~  424 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFK  424 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchh
Confidence            998754111            244677778899999999998776665443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00071  Score=60.36  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=84.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +.+|+|-=+|+|.=++.++...+ ..+++.=|+||++++.+++|++.+... ....+..|+...+...     ...||+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~-----~~~fd~I  125 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL-----HRAFDVI  125 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc-----CCCccEE
Confidence            78999999999999999998876 338999999999999999999987443 3566668887776653     4789988


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      =+|. .....+|++.+.+.++.||++.+....
T Consensus       126 DiDP-FGSPaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         126 DIDP-FGSPAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             ecCC-CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence            7775 344567999999999999999986543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.62  E-value=0.00017  Score=64.05  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=67.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+++++|||||++|++|..+++.   +++|++||..+-.     ..+.   -..+|+...+|.....+.      .+.+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence            47789999999999999999985   5699999966521     1221   234799999988775442      36899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCC-cEEEEeCCCCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHG  234 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~~~~g  234 (272)
                      ++++|.... .....+.+.+.|..| ..-.|-|+..++
T Consensus       273 wvVcDmve~-P~rva~lm~~Wl~~g~cr~aIfnLKlpm  309 (357)
T PRK11760        273 WLVCDMVEK-PARVAELMAQWLVNGWCREAIFNLKLPM  309 (357)
T ss_pred             EEEEecccC-HHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence            999997632 334556666666665 123333455544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.62  E-value=8.9e-05  Score=66.94  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=82.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++..++++|||.|....+++..-  ..++++++.++..+..+.......++.++-.++.+|......      +++.|
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f  179 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF  179 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence            3456689999999999999998752  578999999999888888777777777666666666654322      36899


Q ss_pred             EEEEE-cCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~-d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |.+.. +..  .+.....++++++.++|||+++.-+..
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            99964 333  556778899999999999999986544

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.57  E-value=4.6e-05  Score=63.48  Aligned_cols=98  Identities=8%  Similarity=0.047  Sum_probs=71.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ...++||||+.|+....+...-  -.+++-+|.|-.|++.++..- ..++  .+....+|- +.++.     .++++|+|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ldf-----~ens~DLi  141 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLDF-----KENSVDLI  141 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hcccc-----cccchhhh
Confidence            4589999999999998877542  358999999999998887632 1122  244555554 33332     26899999


Q ss_pred             EEc---CCccchHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVD---AEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..   ++..+.+..+..|...|||+|.++..
T Consensus       142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            865   44666788899999999999988763

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.55  E-value=0.00059  Score=66.94  Aligned_cols=103  Identities=21%  Similarity=0.231  Sum_probs=71.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-------CC----CcEEEEEeCChhHH--------------HHHHHHHHH-----hCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSL--------------EVAKKYYER-----AGV  169 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-------~~----~~~v~~iD~s~~~~--------------~~a~~~~~~-----~~~  169 (272)
                      .-+|+|+|-|+|+..+...+.+       ++    .-+++++|..|-..              +.+++..+.     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999888777554       21    24899999865222              222222211     121


Q ss_pred             ------CC--CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------chHHHHHHHHccCCCCcEEEE
Q 024097          170 ------SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       170 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                            .+  ++++..||+.+.++.+     ...+|++|.|+-.+      +..++|..+.++++|||+++-
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence                  12  3557889999988876     45799999996422      357899999999999999984

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.48  E-value=0.0045  Score=58.45  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=97.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC---CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      +..-......++|..++...+..+|.|-.||+|..-....+.+..   ...++|.|+++.....|+-++--.|....+..
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            445567888899998888766779999999999988887777642   26799999999999999999887777544566


Q ss_pred             EEcChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCc---E
Q 024097          176 KHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGG---I  224 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG---~  224 (272)
                      .++|........ .+.+.+.||+|+.+.+.                            .....+++++...|+|||   +
T Consensus       246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai  324 (489)
T COG0286         246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI  324 (489)
T ss_pred             cccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence            666665432110 01124679998765331                            012567889999999965   5


Q ss_pred             EEEeCCCCCCc
Q 024097          225 IVIDNVLWHGK  235 (272)
Q Consensus       225 lvi~d~~~~g~  235 (272)
                      ++.+++++.|.
T Consensus       325 vl~~gvlfr~~  335 (489)
T COG0286         325 VLPDGVLFRGG  335 (489)
T ss_pred             EecCCcCcCCC
Confidence            66677777765

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.42  E-value=0.001  Score=57.64  Aligned_cols=107  Identities=16%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-------------------------------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------------------------------  167 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------------------------------  167 (272)
                      ...+||--|||.|..+..+|..   +..+.|.|.|--|+-..+-.+...                               
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            3468999999999999999986   579999999998865443322210                               


Q ss_pred             --------CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          168 --------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       168 --------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                              ....++.+..||+.+....-   ...++||.|+...   ...+..++++.+.++|||||+.|=-..+
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPL  204 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPL  204 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCc
Confidence                    01124555566665543210   0136899885331   2556788999999999999987754433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.00071  Score=62.76  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=74.6

Q ss_pred             CEEEEEcCccCHHHHHHHH---HCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIAL---VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~---~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..|+-+|+|.|-......+   ...++.+++++|.+|.++...+. .+...+.++|+++.+|..++.+.      .++.|
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap------~eq~D  441 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP------REQAD  441 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc------hhhcc
Confidence            4567789999987665544   34456789999999999877654 44456778999999999886431      26789


Q ss_pred             EEEEc-----CCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d-----~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +++..     ++-+--++.+.-+.+.|||.|+.|-
T Consensus       442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             chHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            88743     2344467889999999999987664

>PHA01634 hypothetical protein

Probab=97.31  E-value=0.00077  Score=51.12  Aligned_cols=75  Identities=20%  Similarity=0.182  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|+|||++.|.++++++..-  ..+|+++|.++...+..+++++....-++.... +   ++..      +-++||
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~------~Y~~~D   94 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNG------EYEDVD   94 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccc------cCCCcc
Confidence            367899999999999999998752  358999999999999999988766543332222 1   1111      147899


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      +..+|..
T Consensus        95 i~~iDCe  101 (156)
T PHA01634         95 IFVMDCE  101 (156)
T ss_pred             eEEEEcc
Confidence            9999865

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.27  E-value=0.001  Score=56.51  Aligned_cols=89  Identities=11%  Similarity=0.145  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      +....+...+.... .+.+|+|||||.=-.++.+... +++..++|+|++..+++.....+...+..  .++...|....
T Consensus        90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~  166 (251)
T PF07091_consen   90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSD  166 (251)
T ss_dssp             GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTS
T ss_pred             hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeecc
Confidence            34555666655543 4789999999998888876654 34689999999999999999999888875  56666666554


Q ss_pred             HHHHHhCCCCCceEEEEEcC
Q 024097          184 LKALILNGEASSYDFAFVDA  203 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~  203 (272)
                      .+       ....|+.++--
T Consensus       167 ~~-------~~~~DlaLllK  179 (251)
T PF07091_consen  167 PP-------KEPADLALLLK  179 (251)
T ss_dssp             HT-------TSEESEEEEET
T ss_pred             CC-------CCCcchhhHHH
Confidence            33       46789988643

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.21  E-value=0.00064  Score=55.40  Aligned_cols=113  Identities=9%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHH------HHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEV------AKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~------a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      ....++.+|+|+=.|.|++|.-++..+++.+.|+++-..+...-.      .+...++.... +++.+-.+.....    
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~----  118 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG----  118 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC----
Confidence            345678999999999999999999999888999988765431110      01111111111 2333322221111    


Q ss_pred             hCCCCCceEEEEEcC--------C--ccchHHHHHHHHccCCCCcEEEEeCC-CCCCc
Q 024097          189 LNGEASSYDFAFVDA--------E--KRMYQEYFELLLQLIRVGGIIVIDNV-LWHGK  235 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~--------~--~~~~~~~l~~~~~lLkpgG~lvi~d~-~~~g~  235 (272)
                         ..+..|+++...        .  .....++...+++.|||||++++.|- ...|.
T Consensus       119 ---~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~  173 (238)
T COG4798         119 ---APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGS  173 (238)
T ss_pred             ---CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCC
Confidence               134555555321        1  22345678888999999999887553 34443

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00039  Score=64.01  Aligned_cols=115  Identities=23%  Similarity=0.221  Sum_probs=93.1

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .......++-+|||.=+++|.-++..++.++.-.+|++-|.++..++..++|++.++..+.++..++|+.-..-...  .
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--~  179 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--M  179 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--c
Confidence            33445567789999999999999999999986678999999999999999999999888889999999876543221  0


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      -...||+|=+|.- .....|++.+.+.++.||++.+.-
T Consensus       180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEe
Confidence            1368999988754 334568999999999999999854

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.18  E-value=0.00047  Score=58.29  Aligned_cols=87  Identities=20%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             HHHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---CC-----CCCEEEEEcC
Q 024097          110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV-----SHKVKIKHGL  179 (272)
Q Consensus       110 ~l~~l~~~~~~--~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~-----~~~v~~~~~d  179 (272)
                      .+...+...++  .+|||.-+|-|.-++.++..   +++|+++|.||-.....+.-++++   ..     ..|++++++|
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d  140 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD  140 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence            34444444444  38999999999999998864   579999999998877666544432   11     1479999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      +.+.+...     .++||+|++|.-
T Consensus       141 ~~~~L~~~-----~~s~DVVY~DPM  160 (234)
T PF04445_consen  141 ALEYLRQP-----DNSFDVVYFDPM  160 (234)
T ss_dssp             CCCHCCCH-----SS--SEEEE--S
T ss_pred             HHHHHhhc-----CCCCCEEEECCC
Confidence            99887622     589999999864

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.16  E-value=0.0036  Score=55.06  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=72.1

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~  193 (272)
                      ....+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ +   |...-......+..+.+.+..++. ..
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~  240 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGK  240 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccc
Confidence            34577899999999 5888999999987 6799999999999999988 4   543211111222123333333332 23


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+.|-...   ....++.....+|+||.+++-.
T Consensus       241 ~~~d~~~dCsG---~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  241 KQPDVTFDCSG---AEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             cCCCeEEEccC---chHHHHHHHHHhccCCEEEEec
Confidence            56999885443   2335667788899999977753

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.05  E-value=0.00028  Score=60.68  Aligned_cols=109  Identities=14%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC---------------------------C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------H  171 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---------------------------~  171 (272)
                      ++.++||||||.-..-  +..+.+.--+|+..|..+...+..++-+++.+.-                           .
T Consensus        56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            5679999999974432  2222222247999999998887776665442110                           1


Q ss_pred             CEE-EEEcChhHHHHHHHhC-C-CCCceEEEEEcC-------CccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          172 KVK-IKHGLAADSLKALILN-G-EASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       172 ~v~-~~~~d~~~~~~~~~~~-~-~~~~fDlV~~d~-------~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .|+ ++.+|.....+ + .. . .+.+||.|++..       +...+...++++.++|||||.|++-.++
T Consensus       134 ~Vk~Vv~cDV~~~~p-l-~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNP-L-DPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSST-T-TTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhceEEEeeccCCCC-C-CccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            122 44455543211 0 00 0 123599998643       3556888899999999999999997766

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.98  E-value=0.0061  Score=54.46  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=69.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++|+-+|+| .|..+..+|+++.  ++|+++|.+++..+.|++.    |-.   .++...-.+..+..     .+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~-----~~  228 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV-----KE  228 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh-----Hh
Confidence            45578899988877 5667888888875  8999999999998888773    332   33332222333333     23


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .||+|+.-..    ...++...+.|++||.+++-.+.
T Consensus       229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            4999987655    34577888899999999986554

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.97  E-value=0.0019  Score=54.39  Aligned_cols=107  Identities=18%  Similarity=0.140  Sum_probs=74.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .+.++.+||=+|+++|.+...+...+.+.+-|+++|.++..-+..   +.-+.-..+|-.+..|+.---+.-   ..-..
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL---~nmAkkRtNiiPIiEDArhP~KYR---mlVgm  226 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL---INMAKKRTNIIPIIEDARHPAKYR---MLVGM  226 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH---HHHhhccCCceeeeccCCCchhee---eeeee
Confidence            456889999999999999999999998899999999998543222   221222235666767775421110   01357


Q ss_pred             eEEEEEcCCccchHHHH-HHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l-~~~~~lLkpgG~lvi~  228 (272)
                      .|+||.|...++...++ -++...||+||-+++.
T Consensus       227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            89999998877655544 3456789999998874

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.0045  Score=51.83  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC----Cc----EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALI  188 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~  188 (272)
                      .-++|+|+.+..|.|+..+.+.+-.    .+    ++++||+.+-           +... .|.-+++|...  .....+
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHH
Confidence            3479999999999999999987621    21    3999999763           2333 36667777643  222222


Q ss_pred             hCCCCCceEEEEEcCC-----ccchHHH---------HHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAE-----KRMYQEY---------FELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~-----~~~~~~~---------l~~~~~lLkpgG~lvi~  228 (272)
                      ...+.++.|+|++|+.     .++..+|         |.-...+|+|||.+|.-
T Consensus       109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            2223468999999975     2333333         33335789999999864

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.00083  Score=59.44  Aligned_cols=108  Identities=23%  Similarity=0.267  Sum_probs=67.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..+++|||+|.|.|....++-..+|.-..++-+|.|+..-++.....+.... .+.....+|+....-.+   +....|+
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l---p~ad~yt  187 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL---PAADLYT  187 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC---Cccceee
Confidence            4678999999999987777667777555788889888665554433322222 22233333333321111   1136788


Q ss_pred             EEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ++++...      ......+++.++.++.|||.|||-+
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            8875322      2234458899999999999999854

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.89  E-value=0.0023  Score=58.27  Aligned_cols=59  Identities=20%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      .|||||+|||..++..+++-.  -.||++|.-..|.+.|++...++|+.++|+++.-...+
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            689999999999998887643  47999999999999999999999999999988655443

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.0056  Score=54.71  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=78.4

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH-hC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LN  190 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~  190 (272)
                      +...++.+|||+.+..|.-+..+.+.+-   ..+.|++=|.++..+...+......... .+.+...++........ ..
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccC
Confidence            4567889999999999999999988764   2358999999999888877776544432 34444444432211110 11


Q ss_pred             C--CCCceEEEEEcCCc--------------c------------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          191 G--EASSYDFAFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       191 ~--~~~~fDlV~~d~~~--------------~------------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +  +...||-|++|.+.              .            -...++....++||+||.+|...+.
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence            1  23689999998541              0            0234566778999999999987654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.79  E-value=0.017  Score=52.18  Aligned_cols=106  Identities=20%  Similarity=0.218  Sum_probs=71.5

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~  195 (272)
                      .++.+|+-+||| .|..+..+++..+ ..+|+.+|.+++.++.|++...    .+.+..... +........   .....
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g----~~~~~~~~~~~~~~~~~~~---t~g~g  238 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG----ADVVVNPSEDDAGAEILEL---TGGRG  238 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC----CeEeecCccccHHHHHHHH---hCCCC
Confidence            344589999999 4888888888876 6799999999999999987542    111111111 222222122   11236


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +|++|-...   ....++.+.++++|||.+++-.+.-..
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence            999996655   445788899999999999986655333

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.54  E-value=0.0039  Score=53.81  Aligned_cols=106  Identities=21%  Similarity=0.165  Sum_probs=71.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ..=|.+.+++....   .+..++|+|||.|-.+.     ..+...++++|++...+..+++    .+   ......+|++
T Consensus        31 ~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----~~---~~~~~~ad~l   95 (293)
T KOG1331|consen   31 APWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----SG---GDNVCRADAL   95 (293)
T ss_pred             CccHHHHHHHhccC---CcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----CC---Cceeehhhhh
Confidence            33466666666543   36789999999995432     1135689999999887776654    22   1245666666


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .....      +.+||.++..+..      ......++++.+.|+|||...+-
T Consensus        96 ~~p~~------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen   96 KLPFR------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             cCCCC------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            54322      5789998765442      23456799999999999987763

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.013  Score=45.72  Aligned_cols=114  Identities=13%  Similarity=0.064  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      .++.+-...++...+..+.+|+|+|.|...+..++..  --.-+|+|++|-.+.+++-..-+.|...+.+|..-|.... 
T Consensus        58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~-  134 (199)
T KOG4058|consen   58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV-  134 (199)
T ss_pred             HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc-
Confidence            3344444445555666789999999999999888763  1357999999999999988777888888888886666442 


Q ss_pred             HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       +      -..|..|++-+........-.++..-+..|..++..
T Consensus       135 -d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  135 -D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             -c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence             1      245555655555444444455566677788887764

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.51  E-value=0.0052  Score=54.39  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH-------HHHHHHHHhCCCC-CE
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH-KV  173 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~~~~~-~v  173 (272)
                      .+.++..-+++.++...+++.|.|--.|||......|.-   ++.|+|.||+-.++.       -.+.|++..|..+ -+
T Consensus       191 SmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fl  267 (421)
T KOG2671|consen  191 SMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFL  267 (421)
T ss_pred             ccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhh
Confidence            456777777777888889999999999999888777653   589999999987776       3567888888654 35


Q ss_pred             EEEEcChhHHHHHHHhCCCCCceEEEEEcCCc------------------------------c------chHHHHHHHHc
Q 024097          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK------------------------------R------MYQEYFELLLQ  217 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------------------------------~------~~~~~l~~~~~  217 (272)
                      .+..+|.....  +..   ...||.|++|.+-                              .      .+-..+.-..+
T Consensus       268 dvl~~D~sn~~--~rs---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~  342 (421)
T KOG2671|consen  268 DVLTADFSNPP--LRS---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR  342 (421)
T ss_pred             heeeecccCcc--hhh---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence            67777775421  111   4689999998640                              0      01234555568


Q ss_pred             cCCCCcEEEE
Q 024097          218 LIRVGGIIVI  227 (272)
Q Consensus       218 lLkpgG~lvi  227 (272)
                      .|..||.+++
T Consensus       343 ~L~~ggrlv~  352 (421)
T KOG2671|consen  343 RLVDGGRLVF  352 (421)
T ss_pred             hhhcCceEEE
Confidence            9999999986

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.11  Score=44.29  Aligned_cols=112  Identities=17%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ++....+...+|+|+|+-.-+..+...+.+.   .+++.+|++...++...+.+...-..-.+.-+.+|....+..+.. 
T Consensus        73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~-  151 (321)
T COG4301          73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR-  151 (321)
T ss_pred             HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC-
Confidence            4455678899999999999999988887532   589999999998876554444332222366677777666655531 


Q ss_pred             CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        .+.==++|+...     ......|+..+...|+||-++++-
T Consensus       152 --~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         152 --GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             --CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence              123334454432     445677999999999999998874

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.31  E-value=0.01  Score=45.12  Aligned_cols=92  Identities=21%  Similarity=0.309  Sum_probs=61.9

Q ss_pred             ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccch
Q 024097          129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY  208 (272)
Q Consensus       129 G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~  208 (272)
                      |.|..+..+++..+  .+|+++|.++...+.+++    .|...-+.....|..+.+..+   .....+|+||-...   .
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~---~~~~~~d~vid~~g---~   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIREL---TGGRGVDVVIDCVG---S   68 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHH---TTTSSEEEEEESSS---S
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccc---cccccceEEEEecC---c
Confidence            46889999999876  899999999998877765    453211111122233333333   11257999986554   2


Q ss_pred             HHHHHHHHccCCCCcEEEEeCCCC
Q 024097          209 QEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       209 ~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ...++....+|++||.+++-...-
T Consensus        69 ~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHHHHHHhccCCEEEEEEccC
Confidence            457888999999999999875554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.29  E-value=0.00063  Score=55.96  Aligned_cols=94  Identities=15%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+.++||+|+|.|-.+..++-.+.   +|+++|.|..|....++    .+.    .+.  ...+....      +-+||+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----nVl--~~~ew~~t------~~k~dl  172 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----NVL--TEIEWLQT------DVKLDL  172 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----cee--eehhhhhc------Cceeeh
Confidence            457999999999999998887654   68999999888765433    232    111  12233221      347898


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCC-CcEEEEeCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRV-GGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkp-gG~lvi~d~~  231 (272)
                      |.+-..   .-+....++.++.+|+| +|.+|+.-++
T Consensus       173 i~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  173 ILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            875332   22355678899999998 8888876544

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.29  E-value=0.0027  Score=55.10  Aligned_cols=104  Identities=17%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+..|+|+-+|-||+++.+.-..+ ...|+++|.+|..++..+++++.++..++..++.||-...-+       ....|-
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Adr  265 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADR  265 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchh
Confidence            447899999999999995544333 468999999999999999999988887777777777654322       356777


Q ss_pred             EEEcCCccchHHHHHHHHccCCC-Cc-EEEEeCCC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRV-GG-IIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkp-gG-~lvi~d~~  231 (272)
                      |.+..-+..-.. +-.+.+.||| || ++-|+...
T Consensus       266 VnLGLlPSse~~-W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  266 VNLGLLPSSEQG-WPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             eeeccccccccc-hHHHHHHhhhcCCcEEEEeccc
Confidence            776543322222 2233445554 55 66666543

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.18  E-value=0.084  Score=48.22  Aligned_cols=108  Identities=18%  Similarity=0.213  Sum_probs=68.7

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~  191 (272)
                      .....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+   .
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~---~  250 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALREL---T  250 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHH---c
Confidence            34455678999999987 888888998865 346999999999888877642   21 112222221 22222222   1


Q ss_pred             CCCceEEEEEcCCc------------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~------------------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ....+|+||-....                  .+....++.+.+.|+++|.++.-.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            12468988753221                  112456788899999999998754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.16  E-value=0.072  Score=44.35  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHH-------------------------------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER-------------------------------  166 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~-------------------------------  166 (272)
                      .+-++-|-.||.|+..--+.-..++ -..|++-|+++++++.|++|+..                               
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            5568999999999987766655432 24799999999999999988652                               


Q ss_pred             ----------hCCCCCEEEEEcChhHHHH--HHHhCCCCCceEEEEEcCC-------c-----cchHHHHHHHHccCCCC
Q 024097          167 ----------AGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAE-------K-----RMYQEYFELLLQLIRVG  222 (272)
Q Consensus       167 ----------~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~fDlV~~d~~-------~-----~~~~~~l~~~~~lLkpg  222 (272)
                                .|-.....+...|..+.-.  .. ..  ....|+|+.|-+       .     .....+++.+...|.++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~  207 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER  207 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence                      1112235677777665321  11 11  234699998854       1     12567899999999777


Q ss_pred             cEEEEeC
Q 024097          223 GIIVIDN  229 (272)
Q Consensus       223 G~lvi~d  229 (272)
                      +++++.|
T Consensus       208 sVV~v~~  214 (246)
T PF11599_consen  208 SVVAVSD  214 (246)
T ss_dssp             -EEEEEE
T ss_pred             cEEEEec
Confidence            8888743

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.02  E-value=0.016  Score=48.35  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHhhcC----CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097          102 QVSPDQAQLLAMLVQILG----AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~----~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ..+....+++........    ..++|||||-+......-..    --.|+.||+++..                -.+.+
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~q   89 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQ   89 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCcee
Confidence            345555555555443322    25999999976654433221    2369999998631                23455


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcC------CccchHHHHHHHHccCCCCcE
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGI  224 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~------~~~~~~~~l~~~~~lLkpgG~  224 (272)
                      .|+.+..   ....+.+.||+|.+.-      .....-+.+..+.+.|+|+|.
T Consensus        90 qDFm~rp---lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen   90 QDFMERP---LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             eccccCC---CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            5555531   1111357999997542      233455688999999999999

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.00  E-value=0.049  Score=48.82  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=60.8

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..    .....  .+.+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~--~g~~  236 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE--KGYF  236 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc--CCCC
Confidence            357889988875 4556666777654 2379999999988887765    343211111111221    11111  2458


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+||-....   ...++.+.+.|++||.++.-..
T Consensus       237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence            988854432   2356778889999999997653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.76  E-value=0.028  Score=41.94  Aligned_cols=89  Identities=22%  Similarity=0.228  Sum_probs=58.9

Q ss_pred             CccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEEEEEcCC
Q 024097          128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       128 ~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ||.|..+..+++.+...+ +|+.+|.+++.++.+++    .+    +.++.||+.+.  +...    +-...|.|++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERA----GIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHT----TGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhc----CccccCEEEEccC
Confidence            566889999888875556 89999999998776654    23    67899999763  2322    2367888888765


Q ss_pred             ccchHHHHHHHHccCCCCcEEEEe
Q 024097          205 KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       205 ~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .....-..-...+.+.|...+++.
T Consensus        72 ~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   72 DDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCeEEEE
Confidence            443333344445666777777753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.75  E-value=0.13  Score=48.79  Aligned_cols=109  Identities=15%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---------------Chh
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---------------LAA  181 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---------------d~~  181 (272)
                      .++.+|+-+|+| .|..++..++.++  ++|+++|.+++..+.+++    .|.. .+.+-..               +..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence            468899999999 5778888888875  589999999998887766    3422 0111100               111


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc--hHHH-HHHHHccCCCCcEEEEeCCCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~-l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +........ ....+|+||.....+.  .+.. .+...+.+||||+++.-.+...|
T Consensus       236 ~~~~~~~~~-~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        236 KAEMALFAE-QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHh-ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence            100111010 0146899997655322  2334 58999999999998875554344

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.74  E-value=0.053  Score=46.41  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH-----HHHhCCCCCEEEEEcC---hhHHHHHHHhC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-----YERAGVSHKVKIKHGL---AADSLKALILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-----~~~~~~~~~v~~~~~d---~~~~~~~~~~~  190 (272)
                      ...+|||+|+|+|..++.++...  .++|+..|...- +...+.+     .+...+...+.+..-+   ..+....    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            56789999999998888888764  478888888543 3333222     2222222234443332   2222111    


Q ss_pred             CCCCc-eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASS-YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~-fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        ... ||+|+....   .+........+..+|..+|++.+.
T Consensus       159 --~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  159 --LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             --cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence              133 899885432   444566677777888888855553

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.65  E-value=0.092  Score=47.12  Aligned_cols=94  Identities=18%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++.+||-+|+| .|..+..+++......+|+++|.+++..+.+++    .+.   . ..   ..+. ..      ...+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~---~~~~-~~------~~g~  223 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YL---IDDI-PE------DLAV  223 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-ee---hhhh-hh------ccCC
Confidence            467899999975 243445556643214689999999988777654    221   1 11   1111 11      1258


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |+||-..........++...++|++||.+++-.
T Consensus       224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            988743332223456888899999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.63  E-value=0.05  Score=47.48  Aligned_cols=95  Identities=16%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +|+|+.||.|..+..+.+. + -..+.++|+++.+++..+.|+..       .++.+|..+....-.    ...+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~   68 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG   68 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence            6999999999998888764 2 23579999999999888777632       155666665433210    256999987


Q ss_pred             cCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          202 DAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       202 d~~~------------~~-----~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+.            .+     ...++ .+.+.++|. ++++.|+.
T Consensus        69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~-~~v~ENV~  113 (275)
T cd00315          69 GFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK-YFLLENVK  113 (275)
T ss_pred             CCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC-EEEEEcCc
Confidence            6531            11     11222 334556774 78888885

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK13699 putative methylase; Provisional

Probab=95.61  E-value=0.022  Score=48.31  Aligned_cols=51  Identities=14%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------------------chHHHHHHHHccCCCCcEEEE
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------------------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .++++||+.+.+..+.    ++++|+||.|.+-.                  ....++.++.++|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999887763    58999999996521                  124567888999999998876

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.55  E-value=0.021  Score=43.70  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=39.7

Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++..||+.+.++.+     ...||+||.|+-      .-...++++.+.++++|||++..-
T Consensus        32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty   89 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY   89 (124)
T ss_dssp             EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence            4678899999998887     579999999964      223578999999999999999864

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PRK11524 putative methyltransferase; Provisional

Probab=95.49  E-value=0.053  Score=47.57  Aligned_cols=56  Identities=5%  Similarity=-0.006  Sum_probs=44.6

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH
Q 024097          108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (272)
Q Consensus       108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (272)
                      .+++..++..  .++..|||--+|+|..+++..+ +  +-+.+|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4566666654  4788999999999987776555 3  34899999999999999999853

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.31  E-value=0.057  Score=44.98  Aligned_cols=55  Identities=20%  Similarity=0.204  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097          105 PDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (272)
Q Consensus       105 ~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (272)
                      +.-.+++..++..  .++..|||.-||+|..+.+..+ ++  -+.+|+|++++.++.|++
T Consensus       175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-LG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-TT---EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHH-cC--CeEEEEeCCHHHHHHhcC
Confidence            3344555555543  4678999999999987776665 33  489999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.30  E-value=0.51  Score=40.86  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhHH-HHHHHhCC-CCCc
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EASS  195 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-~~~~~~~~-~~~~  195 (272)
                      ...|+.+|||.=.-...+.  .+.+.+++=+|. |+.++.-++.+...+.  ..+.+++..|..+. ...+...+ +.+.
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCccccHHHhcC--CCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            4579999997654444332  232344544444 5566666677765443  45788999988642 23333322 2233


Q ss_pred             eEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .-++++.+.     ......+++.+.+...||+.|+++-+.
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            345554443     445667888888888899999998543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.17  E-value=0.18  Score=45.45  Aligned_cols=104  Identities=19%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-.|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+....   ...
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~~  244 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GGF  244 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CCC
Confidence            34567899988875 3555566777653 2259999999988777754    3432112222223323222221   124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||-....   ...++.+.+.+++||.+++-..
T Consensus       245 g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence            58988743322   2346677889999999987544

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK11524 putative methyltransferase; Provisional

Probab=95.12  E-value=0.042  Score=48.17  Aligned_cols=53  Identities=25%  Similarity=0.313  Sum_probs=40.6

Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------c-------------hHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------M-------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~-------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+++++|+.+.+..+.    +++||+||+|.+..      .             ...++..+.++|||||.|++.
T Consensus         8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45789999999776552    57999999997621      0             135778889999999999874

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.04  E-value=0.012  Score=54.62  Aligned_cols=98  Identities=11%  Similarity=0.081  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .-++|+|..+|.|+++.+|.+.     .|..+...|..-.-.-..+-..|+-.    +..|..+.++..     +.+||+
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsTY-----PRTYDL  430 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFSTY-----PRTYDL  430 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccch----hccchhhccCCC-----Ccchhh
Confidence            4468999999999999888753     24444444321100111111123321    223444433332     578999


Q ss_pred             EEEcCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |-.++.      .-.....+-++-|+|||||.++|.|-
T Consensus       431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence            977654      23356677788899999999999643

; GO: 0008168 methyltransferase activity

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.01  E-value=0.27  Score=43.44  Aligned_cols=99  Identities=21%  Similarity=0.293  Sum_probs=61.5

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+||..|+| .|..+..+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+ ...   ....
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~~  232 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGGG  232 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCCC
Confidence            4566788888876 477777788775  4689999999987776644    344221111111121222 111   2357


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+|+.....   ...++.+.+.|+++|.++.-
T Consensus       233 ~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         233 FDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             ceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            9988743322   34677888999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.96  E-value=0.18  Score=45.71  Aligned_cols=102  Identities=24%  Similarity=0.304  Sum_probs=60.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||-+|+| .|..+..+++..+  . +|+++|.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~  257 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G  257 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence            34567888888875 3445566676653  4 69999999988877754    3442111111122222222221    2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.+|+||-....   ...++.+.+.|++||.++.-..
T Consensus       258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence            368988853322   2357777889999999987543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK13699 putative methylase; Provisional

Probab=94.77  E-value=0.12  Score=43.72  Aligned_cols=56  Identities=9%  Similarity=0.000  Sum_probs=43.3

Q ss_pred             HHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh
Q 024097          109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (272)
Q Consensus       109 ~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (272)
                      +++..++.  ..++..|||--||+|..+.+..+.   +-+++|+|++++..+.+.++++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            44444443  347789999999999887776653   358999999999999999988653

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.71  E-value=0.25  Score=44.35  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=61.2

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-+|+|. |..+..+++..+  .+|++++.+++..+.+++    .|...-+.....+..+............
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence            345678999999864 666677777754  589999999988877754    3432212211111112222221111112


Q ss_pred             ceE----EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fD----lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+|    +|| +..-  ....++.+.++|++||.+++-...
T Consensus       237 g~d~~~d~v~-d~~g--~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       237 GLRSTGWKIF-ECSG--SKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCcCEEE-ECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence            354    454 3321  123566778889999999876544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.67  E-value=0.51  Score=42.47  Aligned_cols=102  Identities=13%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  191 (272)
                      ....++.+||=.|+  |.|..+..+++..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+...   .
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~  225 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY---F  225 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH---C
Confidence            34557789999987  3677888888876  46899999988876665432   354321221111 232323222   1


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                       .+.+|+||-....    ..+..+.+.|++||.+++-.
T Consensus       226 -~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 -PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence             2468988843321    35778889999999998654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.50  E-value=0.45  Score=41.97  Aligned_cols=103  Identities=13%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +.+|.-||.| .|..+..+|-.+  ++.|+-+|+|.+.++.....+     ..|++....+...+....      .+.|+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v------~~aDl  234 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV------KKADL  234 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh------hhccE
Confidence            4567778877 577787788765  489999999998887766654     247888887776655544      57898


Q ss_pred             EEEc---CCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          199 AFVD---AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       199 V~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      |+-.   .......-..++..+.+|||++|+=-.+...|.
T Consensus       235 vIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc  274 (371)
T COG0686         235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGC  274 (371)
T ss_pred             EEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCc
Confidence            8732   222333345777888999999876433444443

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.45  E-value=0.27  Score=46.58  Aligned_cols=102  Identities=16%  Similarity=0.184  Sum_probs=59.9

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---------------cChh
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---------------GLAA  181 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---------------~d~~  181 (272)
                      .++.+|+-+|+| .|..+..+++.++  +.|+.+|.+++..+.+++    .|.. .+++-.               .+..
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence            356899999998 4667777777764  679999999997776654    2321 111111               0111


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097          182 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +....+..+ .-..+|+||....   .+...-..++..+.+|||++++-
T Consensus       235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            101111110 0256999986552   22222256777899999998763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.22  Score=44.81  Aligned_cols=48  Identities=17%  Similarity=0.111  Sum_probs=39.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-------CCcEEEEEeCChhHHHHHHHHHHHh
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERA  167 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~  167 (272)
                      +-.++|||.|+|..+.-+++.+.       ...++.-||+|++..+.-++.++..
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            45899999999999988877652       2468999999999998888887654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.40  E-value=0.21  Score=42.12  Aligned_cols=87  Identities=17%  Similarity=0.214  Sum_probs=56.5

Q ss_pred             CCEEEEEcCccCHHHHHHH-HHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcC-hhHHHHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGL-AADSLKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d-~~~~~~~~~~~~~~~~f  196 (272)
                      .-++||||+|.  ..++=. -...-+.+++|.|+++..++.|+.++..+ ++...++++... ...+++....  -.+.|
T Consensus        79 ~i~~LDIGvGA--nCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~y  154 (292)
T COG3129          79 NIRILDIGVGA--NCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNERY  154 (292)
T ss_pred             ceEEEeeccCc--ccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--cccee
Confidence            34789998864  333321 11122568999999999999999998876 676677776443 2223332211  14789


Q ss_pred             EEEEEcCCccchHH
Q 024097          197 DFAFVDAEKRMYQE  210 (272)
Q Consensus       197 DlV~~d~~~~~~~~  210 (272)
                      |++.++.+.....+
T Consensus       155 d~tlCNPPFh~s~~  168 (292)
T COG3129         155 DATLCNPPFHDSAA  168 (292)
T ss_pred             eeEecCCCcchhHH
Confidence            99999988555433

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.31  E-value=0.39  Score=42.72  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=58.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||=+|+| .|..+..+++..+  .+ |++++.+++..+.+++    .|...-+.....+ .+.+....   ..
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~  229 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG  229 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence            44567899988864 3445555666654  55 9999999887776644    3442111111112 12222221   12


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||-....   ...+....+.|+++|.+++-.
T Consensus       230 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         230 AGADVAIECSGN---TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence            469988854332   234566778899999998643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=94.29  E-value=0.17  Score=45.66  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (272)
                      ..+++..+....+-..|+|+|.|.|+.+..++-..  +-.|.+||-|....+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            34555556666677899999999999999998765  5799999999777766654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.18  E-value=0.61  Score=39.45  Aligned_cols=98  Identities=22%  Similarity=0.313  Sum_probs=60.6

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++.+||-.|+|. |..+..+++..  +.+|++++.+++..+.+++    .+...-+.....+..+.+. .   ...+.+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~---~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-L---TGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-H---hcCCCC
Confidence            5678999999885 66666777765  4789999999877666543    2322111111111212111 1   113679


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+++......   ..++.+.+.|+++|.++.-
T Consensus       203 d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         203 DVVIDAVGGP---ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             CEEEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence            9998654321   3567778889999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.15  E-value=0.22  Score=46.31  Aligned_cols=98  Identities=7%  Similarity=0.032  Sum_probs=66.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +++.+|||.--.+..+-+..  --.|+.+|+|+-.++.+.....  ......++...|.....-      ++++||+|+.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f------edESFdiVId  120 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF------EDESFDIVID  120 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC------CCcceeEEEe
Confidence            89999999887666655532  2369999999999887765442  122346777777755322      2688998875


Q ss_pred             cCC-------------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          202 DAE-------------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       202 d~~-------------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      -+.             .......+.++.++|++||..+.--
T Consensus       121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            332             1123456788899999999866543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.10  E-value=0.28  Score=43.25  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=59.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC----------------------------
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK----------------------------  172 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~----------------------------  172 (272)
                      -+||--|||.|..+..++....   .+-|=|.|--|+-...=.+......++                            
T Consensus       152 i~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  152 IRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             ceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            4789999999999999997532   333445555444322211111111111                            


Q ss_pred             -----------EEEEEcChhHHHHHHHhCCCCCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeC
Q 024097          173 -----------VKIKHGLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       173 -----------v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                                 ..+-.||+.+..+.-   ...+.||+|+...   ..++..++++.+.++|+|||+.|=-.
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG  296 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG  296 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence                       122234444432210   0124689886432   24567889999999999999988543

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=94.06  E-value=0.99  Score=35.42  Aligned_cols=101  Identities=17%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .-|||+|-|.|..=-.+-+.+| +-+|+.+|..-....        ....+.-.++.||+.+.++.+..-  ..+.-++-
T Consensus        30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH   98 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPALARF--GAGAALAH   98 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred             CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence            5799999999999999999998 779999998532211        111122468999999988773211  23444444


Q ss_pred             EcCCcc---chHH---H-HHHHHccCCCCcEEEEeCCCC
Q 024097          201 VDAEKR---MYQE---Y-FELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       201 ~d~~~~---~~~~---~-l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .|-...   ....   . -..+..+|.|||+++-..-+.
T Consensus        99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            443321   1111   2 233458999999999876554

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.01  E-value=0.57  Score=41.85  Aligned_cols=108  Identities=24%  Similarity=0.283  Sum_probs=69.1

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~  193 (272)
                      +..++.+|.-+||| .|..++.-|+... ..+++++|++++.++.|++    .|..+-+.-... |..+.+..+-    +
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T----~  252 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT----D  252 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc----C
Confidence            44577899999997 5777777777665 6799999999999998877    454432222222 3444444442    2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      +..|.+|-...   ....++..+..+.++|..++-.+--.|.
T Consensus       253 gG~d~~~e~~G---~~~~~~~al~~~~~~G~~v~iGv~~~~~  291 (366)
T COG1062         253 GGADYAFECVG---NVEVMRQALEATHRGGTSVIIGVAGAGQ  291 (366)
T ss_pred             CCCCEEEEccC---CHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            36777764322   2225666666677789888865554443

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.92  E-value=0.16  Score=48.47  Aligned_cols=100  Identities=11%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH-----HHHHHHhCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNG  191 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~  191 (272)
                      +.+...|||+||..|.|....++.+|.++-|+|+|+.|-.           ... ++...+.|...     -+.....  
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~-~c~t~v~dIttd~cr~~l~k~l~--  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP-NCDTLVEDITTDECRSKLRKILK--  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC-ccchhhhhhhHHHHHHHHHHHHH--
Confidence            4467789999999999999999999988899999997731           111 22222233221     1122221  


Q ss_pred             CCCceEEEEEcCCcc----c----------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          192 EASSYDFAFVDAEKR----M----------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~----~----------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                       ..+.|+|+.|+.+.    +          ....+..+...|+.||.+ ++.+..
T Consensus       108 -t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvfr  160 (780)
T KOG1098|consen  108 -TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVFR  160 (780)
T ss_pred             -hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-cccccc
Confidence             34669999887522    1          122344455778999994 444443

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.89  E-value=0.66  Score=41.52  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=65.8

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++++||-.|.  |.|..++.||++++  +.++++--+++..+.++    ..|-..-+.+...|..+...++.   +
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t---~  208 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELT---G  208 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHc---C
Confidence            33556889999984  45667788898875  36677776665554443    34544345555566655554442   1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...+|+|+-....    ..+....+.|+++|.++.-..
T Consensus       209 g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         209 GKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence            2469998854332    356668888999999987544

>PLN02740 Alcohol dehydrogenase-like

Probab=93.89  E-value=0.57  Score=42.66  Aligned_cols=103  Identities=14%  Similarity=0.215  Sum_probs=60.7

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  191 (272)
                      ....++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence            345577899999875 3445566676654 2269999999988877754    45432121111  11222222221   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d  229 (272)
                       .+.+|+||-....   ...+......+++| |.+++-.
T Consensus       266 -~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 -GGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEc
Confidence             1269988754332   23566777788886 8877643

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.85  E-value=0.34  Score=43.53  Aligned_cols=96  Identities=14%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeC---ChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .++.+||-+|+| .|..+..+++..+  .+|++++.   +++..+.+++    .|.. .+.....+..+ .. .     .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~~-~-----~  236 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-VK-L-----V  236 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-hh-h-----c
Confidence            467899999886 3666677777754  58999987   5666555543    4432 12111111111 11 0     2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.+|+||-....   ...+....+.|++||.+++-..
T Consensus       237 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         237 GEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence            569988854432   2357788899999999987543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PTZ00357 methyltransferase; Provisional

Probab=93.85  E-value=0.34  Score=47.13  Aligned_cols=103  Identities=12%  Similarity=0.084  Sum_probs=66.0

Q ss_pred             EEEEEcCccCHHHHHHHHH---CCCCcEEEEEeCChhHHHHHHHHHH-HhCC-------CCCEEEEEcChhHHHHHHHhC
Q 024097          122 RCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYE-RAGV-------SHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~-------~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      .|+-+|+|.|-+.-...++   .+...+|++||.|+..+.....+.. ...+       .++|+++..|..++.......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5888999999876655444   3445689999999776555544432 2233       356999999998863210000


Q ss_pred             -----CCCCceEEEEEc-----CCccchHHHHHHHHccCCC----CcE
Q 024097          191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLIRV----GGI  224 (272)
Q Consensus       191 -----~~~~~fDlV~~d-----~~~~~~~~~l~~~~~lLkp----gG~  224 (272)
                           ..-+++|+|+..     ++-+--++.|.-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                 001479999853     2233456777777788876    775

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=93.73  E-value=0.74  Score=41.15  Aligned_cols=103  Identities=14%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+||=.|+| .|..+..+++..+ ...|++++.+++..+.+++    .|...-+.....+ .+.+....   ....
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~~~  228 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RELR  228 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cCCC
Confidence            3467899988875 3445566677654 2247899999987776643    3432111111112 12122221   1246


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|.+++|..-.  ...+....+.|++||.+++-..
T Consensus       229 ~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        229 FDQLILETAGV--PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence            78455554322  2367778899999999997544

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.70  E-value=0.45  Score=42.00  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +++|+-||.|..++.+.++-  --.+.++|+++.+.+.-+.|+.        ....+|..+.......    +.+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~----~~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP----KDVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH----HT-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc----ccceEEEe
Confidence            79999999999999988752  2368999999999888888873        7788888775433221    15899886


Q ss_pred             cCC---------------ccc--hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          202 DAE---------------KRM--YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       202 d~~---------------~~~--~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+               ...  +..++ .+.+.++| -++++.||.
T Consensus        68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~P-k~~~~ENV~  112 (335)
T PF00145_consen   68 GPPCQGFSIAGKRKGFDDPRNSLFFEFL-RIVKELKP-KYFLLENVP  112 (335)
T ss_dssp             E---TTTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS--SEEEEEEEG
T ss_pred             ccCCceEeccccccccccccchhhHHHH-HHHhhccc-eEEEecccc
Confidence            432               011  22233 33455678 568888884

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=93.57  E-value=0.21  Score=39.28  Aligned_cols=43  Identities=21%  Similarity=0.219  Sum_probs=28.6

Q ss_pred             EEcCccC--HHHHHHH-HHCCCCcEEEEEeCChhHHHHHHHH--HHHh
Q 024097          125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERA  167 (272)
Q Consensus       125 EiG~G~G--~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~  167 (272)
                      |||++.|  ..+..++ +...+.++|+++|.+|..++..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            8999999  6666654 2455578999999999999998888  5444

; PDB: 2PY6_A.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.56  E-value=0.86  Score=41.57  Aligned_cols=106  Identities=11%  Similarity=0.245  Sum_probs=62.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC------C-
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E-  192 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~------~-  192 (272)
                      .+|--||-  ||.++.+|-.+. .+.+|+|+|+++..++....     |   +..+..-+..+.+......+      + 
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            45555655  566666555443 24689999999987764422     2   23333333333233222211      1 


Q ss_pred             --CCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          193 --ASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       193 --~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                        -...|++++.-+          ........+.+.+.|++|-.+++....++|..
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT  135 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT  135 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence              125677765432          11234556677899999999999999999963

>PLN02827 Alcohol dehydrogenase-like

Probab=93.55  E-value=0.64  Score=42.37  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=59.1

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~  192 (272)
                      ...++.+||-.|+| .|..+..+++..+ ...|+++|.+++..+.+++    .|...-+....  .+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence            34567899988874 3445555666654 2368999999887776644    45421111111  12222222221    


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d  229 (272)
                      .+.+|+||-....   ...+..+.+.+++| |.+++-.
T Consensus       261 ~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence            2368988753332   23467778889998 9998643

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.54  E-value=0.19  Score=43.24  Aligned_cols=47  Identities=19%  Similarity=0.077  Sum_probs=37.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-------CcEEEEEeCChhHHHHHHHHHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER  166 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~  166 (272)
                      +-+|+|+|+|+|..+.-+++.+..       ..+++.||+||.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            369999999999999999887652       25899999999999888887754

; PDB: 4F3N_A 1ZKD_B.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.47  E-value=1.5  Score=35.08  Aligned_cols=107  Identities=21%  Similarity=0.176  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      -+..+.+.|...+..  .+..+|+=|||=+-+..+.-  ...+..+++..|++...        ...+  +. +|+.=|.
T Consensus         7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~   73 (162)
T PF10237_consen    7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDY   73 (162)
T ss_pred             cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcC--Cc-ceEECCC
Confidence            356666666665554  35579999998554444332  12336689999998743        3322  22 3333333


Q ss_pred             hH--HHH-HHHhCCCCCceEEEEEcCCcc---chHHHHHHHHccCCCCcEEEE
Q 024097          181 AD--SLK-ALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       181 ~~--~~~-~~~~~~~~~~fDlV~~d~~~~---~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+  .++ .+     .++||+|++|.+.-   -.....+.+.-++++++.+++
T Consensus        74 ~~p~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~  121 (162)
T PF10237_consen   74 NEPEELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL  121 (162)
T ss_pred             CChhhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence            22  222 22     47999999999842   123334555566678777775

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.43  E-value=0.96  Score=40.32  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++.+||-.|+| .|..+..+++..  +.+|++++.+++..+.+++    .|...-+.     ..+.        ..
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~--------~~  221 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT--------PP  221 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc--------Cc
Confidence            344567899999864 344556667665  4689999999887766655    45432111     1110        02


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.+|+++.....   ...+....+.|++||.+++-..
T Consensus       222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            457876643322   2367888899999999988554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.41  E-value=1.3  Score=39.04  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .....++.+||=.|.  +.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+...   .
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~  208 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A  208 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence            344557789988874  4666777788876  4689999998887766654    354321222112222222222   1


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       ...+|+||-... .   ..++...+.|+++|.++.-
T Consensus       209 -~~gvd~vld~~g-~---~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         209 -PDGIDCYFDNVG-G---EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             -CCCcEEEEECCC-H---HHHHHHHHhhccCCEEEEE
Confidence             246998884322 1   3567888999999999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.38  E-value=1  Score=39.02  Aligned_cols=101  Identities=21%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+...+..+.+..+.   ....+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~---~~~g~  188 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ---NGRGV  188 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh---CCCCC
Confidence            367899988875 3555566677653 2249999999887776655    34321  111111111122111   12468


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+||-....   ...++.+.+.|+++|.++.-...
T Consensus       189 d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       189 DVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence            988753322   23577788899999999976544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.30  E-value=1.7  Score=38.40  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=62.2

Q ss_pred             HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhC
Q 024097          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (272)
Q Consensus       114 l~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~  190 (272)
                      .....++.+||=.|.  |.|..+..+++..  +.++++++.+++..+.+++    .|...-+..... +..+.....   
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---  203 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---  203 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence            344567789998884  4677777788875  4689999998887766643    454211111111 122222222   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       ..+.+|+||-....    ..++...+.|++||.++.-
T Consensus       204 -~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       204 -SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             -CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence             12469988843221    2457788999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.27  E-value=0.99  Score=39.88  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhH--HHHHHHhCC-CCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD--SLKALILNG-EAS  194 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~--~~~~~~~~~-~~~  194 (272)
                      ...|+-+|||-=  |...---.+++.+|+-+|. |+.++.=++.++..+.  ..+.+++..|..+  +...+.+.| +.+
T Consensus        93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            578999999654  3332211233456666666 7788877777776653  2368999999883  455555444 334


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .--++++.+.     .+....++..+..+..||..++++-.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            4445555443     45577889999999989888777643

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=93.25  E-value=0.14  Score=45.03  Aligned_cols=97  Identities=20%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhcC-CC-E---EEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          106 DQAQLLAMLVQILG-AQ-R---CIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       106 ~~~~~l~~l~~~~~-~~-~---VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ....++..|+...+ ++ +   =+|||+  |.+.++.+... ..+...+++|+++..+..|++++.++++.+++.+++..
T Consensus        84 nYihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~  161 (419)
T KOG2912|consen   84 NYIHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVE  161 (419)
T ss_pred             hhHHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEec
Confidence            34455566665442 22 2   257765  55666655432 22467899999999999999999999999999988876


Q ss_pred             hhHH-HHHHHhCCCCCceEEEEEcCC
Q 024097          180 AADS-LKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       180 ~~~~-~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ..+. +.+......+..||++.++.+
T Consensus       162 ~~ktll~d~~~~~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  162 PQKTLLMDALKEESEIIYDFCMCNPP  187 (419)
T ss_pred             chhhcchhhhccCccceeeEEecCCc
Confidence            5442 222211111345898888765

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.21  E-value=1.2  Score=39.77  Aligned_cols=104  Identities=23%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+..+.+..+.   ...
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~  234 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGK  234 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCC
Confidence            44567889888865 4556666777654 2369999999887766654    4542212222222222222221   124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+++-....   ...+..+.+.|+++|.++.-..
T Consensus       235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            69988854332   2357788889999999886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.20  E-value=1.2  Score=39.66  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             CEEEEEcC--ccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~--G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+||=.|+  |.|..+..+++..+  . +|++++.+++..+.+++.   .|...-+.....+..+.+..+   . ...+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd  226 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD  226 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence            78988885  46777777888764  5 799999988776665543   354321221122232323322   1 24699


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +||-....    ..++.+.+.|+++|.++.
T Consensus       227 ~vid~~g~----~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         227 VYFDNVGG----EISDTVISQMNENSHIIL  252 (345)
T ss_pred             EEEECCCc----HHHHHHHHHhccCCEEEE
Confidence            88843221    135778889999999986

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.17  E-value=3.3  Score=33.86  Aligned_cols=103  Identities=15%  Similarity=0.274  Sum_probs=54.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHH------------HHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +|--||.|  +.++.+|..+. .+.+|+++|++++.++..++-            +++..-..++++. .|..+.+    
T Consensus         2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            56667665  44444333332 246999999999877655421            1111111233332 2222222    


Q ss_pred             hCCCCCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                           ...|++|+.-+          ........+.+.+.+++|-++++......|..
T Consensus        75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt  127 (185)
T PF03721_consen   75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTT  127 (185)
T ss_dssp             -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHH
T ss_pred             -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeee
Confidence                 34688887543          12245667888899999999999888887753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.17  E-value=1.6  Score=38.82  Aligned_cols=101  Identities=13%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  191 (272)
                      ....++.+||=.|+  |.|..+..+++..  +.++++++.+++..+.+++.   .|...-+..... +..+.+...   .
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~  218 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---F  218 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---C
Confidence            44567789998886  4666777788875  46899999888876666543   344321221111 232222222   1


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       ...+|+||-... .   ..++.+.+.|+++|.++.-
T Consensus       219 -~~gvd~v~d~~g-~---~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 -PNGIDIYFDNVG-G---KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             -CCCcEEEEECCC-H---HHHHHHHHHhccCcEEEEe
Confidence             246998884322 1   4577888999999999863

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.86  E-value=1.2  Score=40.69  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++.+|+=+|+| .|..+...++.++  .+|+.+|.+++..+.+...+   +.  .+.....+..+ +...     -..+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~-----l~~aD  232 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA-----VKRAD  232 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH-----HccCC
Confidence            55679999887 4556666666554  58999999987665544332   21  12222222222 2222     15689


Q ss_pred             EEEEcCCc--cchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          198 FAFVDAEK--RMYQE-YFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       198 lV~~d~~~--~~~~~-~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      +||.....  ...+. +-+...+.++||++|+--.+...|.
T Consensus       233 vVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       233 LLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             EEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            99975421  11111 2355667789988766433444443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=92.82  E-value=1  Score=40.05  Aligned_cols=102  Identities=23%  Similarity=0.318  Sum_probs=59.3

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++    .+...-+.....+..+.+...   ...+
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~---~~~~  235 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL---TGGR  235 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH---cCCC
Confidence            34567788887764 3666677777654 2478888888776665543    332211122222222222222   1135


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|++|-....   ...+....+.|+++|.++.-
T Consensus       236 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         236 GVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            69988843221   13677788899999998854

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.60  E-value=0.42  Score=42.18  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++++||=+|+| .|..+..+++..+ ...|+++|.+++.++.+.+.    .      ++  |..+.   .     ...+|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D  202 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR  202 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence            56788888876 4666677777764 23477888888766555431    1      11  11110   0     24689


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||-....   ...++.+.++|++||.+++-.
T Consensus       203 vvid~~G~---~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       203 AIYDASGD---PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             EEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence            88854332   235678889999999999744

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.55  E-value=0.092  Score=38.97  Aligned_cols=40  Identities=23%  Similarity=0.589  Sum_probs=28.6

Q ss_pred             ceEEEEEcCC---------ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          195 SYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       195 ~fDlV~~d~~---------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +||+|++-..         ......+|+.++.+|+|||.+++.---|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899987543         334677999999999999999998655544

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.22  E-value=2.2  Score=38.67  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=60.4

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~  192 (272)
                      ...++.+||-+|+| .|..+..+|+..+ ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.    
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  252 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----  252 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence            44567899999875 3556666777654 2379999999988877754    35432111111  11112222221    


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                      .+.+|+||-....   ...+..+.+.+++| |.+++-..
T Consensus       253 ~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       253 DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence            1368988743332   23567778888886 98876443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.18  E-value=2.9  Score=38.37  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||=.|+| .|..+..+++..+ ...++++|.+++..+.+++    .|.. .+.... .+..+.+..+.   ..
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~~  252 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---GE  252 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---CC
Confidence            34567788777775 3555566677654 2346677888877777765    3542 111111 12222222221   12


Q ss_pred             CceEEEEEcCCccc-----------hHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|+||-......           ....++.+.+++++||.+++-.+
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            46898885433221           12468888999999999998554

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.07  E-value=0.93  Score=35.90  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC------CCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      +|.-||+|.+..++...-... +.+|+....+++.++..++.-....      +..++.+ ..|..+.+         ..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~   69 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------ED   69 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------Cc
Confidence            355677776665554333222 4589999999977766654322101      1123433 33443322         45


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .|+|++.-+......+++.+.+.++++-.+++
T Consensus        70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            69999988888888999999999988777775

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.89  E-value=2.5  Score=37.48  Aligned_cols=101  Identities=18%  Similarity=0.313  Sum_probs=61.9

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++.+||-.|+|. |..+..+++..  +.+++++..+++..+.+++    .+..+-+.....+..+.+....   ..
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~  225 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---DG  225 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---CC
Confidence            3445678999998763 66777788775  4789999888887766643    3332212222222223222221   13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+|+++-....   ...+..+.+.|+++|.++.
T Consensus       226 ~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         226 EGADVVIDATGN---PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            468998864322   2356778889999999885

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=91.85  E-value=0.13  Score=47.08  Aligned_cols=64  Identities=19%  Similarity=0.041  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-EEEEEcChhHHH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSL  184 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~  184 (272)
                      .++..|.|+.||.|-.++..+..   +++|++-|.+++++++.+.++..+.+... ++++..|+.+.+
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            46788999999999999988874   58999999999999999999988777665 999999998876

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=91.69  E-value=2.4  Score=38.06  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++.+||=.|+| .|..+..+++..+  . +|++++.+++..+.++    ..|...-+.....+..+....+........+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~  250 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA  250 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence            66788888754 3444455666654  5 8999998887666553    2454321111111111111111111113469


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+||-....   ...+....+.|+++|.++.-
T Consensus       251 d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         251 DVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             cEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            988854322   23567778899999999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.57  E-value=0.26  Score=44.48  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.....-+.++++...++.+|+|+.|-.|..|..++....+.+++.++|.+++..+..++.+..+|... ++...+|+.
T Consensus       196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~  274 (413)
T KOG2360|consen  196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFL  274 (413)
T ss_pred             EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-ccccccccc
Confidence            4445555667777777788999999999999999999988878999999999999999999999999864 777788887


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .. ....   .-.....|++|+.
T Consensus       275 ~t-~~~~---~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  275 NT-ATPE---KFRDVTYILVDPS  293 (413)
T ss_pred             CC-CCcc---cccceeEEEeCCC
Confidence            64 2110   0134456677654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.56  E-value=1.7  Score=40.24  Aligned_cols=88  Identities=11%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+-+|+|. |......++..  +++|+.+|.++...+.|++    .|.    +..  +..+   .+      ..+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v------~~a  258 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV------KEG  258 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH------cCC
Confidence            3688999999984 55555556655  4689999999987766654    343    222  1111   11      357


Q ss_pred             EEEEEcCCccchHHHHHH-HHccCCCCcEEEEeC
Q 024097          197 DFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~-~~~lLkpgG~lvi~d  229 (272)
                      |+||.....   ...+.. ..+.+|+||+++.-.
T Consensus       259 DVVI~atG~---~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence            988865432   234554 488999999987643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=91.53  E-value=0.7  Score=40.81  Aligned_cols=111  Identities=12%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-------------------CCCcEEEEEeCCh--hHHHHHHHHHHHh----------C
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDA--RSLEVAKKYYERA----------G  168 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-------------------~~~~~v~~iD~s~--~~~~~a~~~~~~~----------~  168 (272)
                      ..+||-||.|.|.-..+++..+                   ++...++.||+.+  ..+......+...          .
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999999888877766                   0124899999975  3333333333322          0


Q ss_pred             C----CC--CEEEEEcChhHHHH-HHHhCCCCCceEEEEEc--------CCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          169 V----SH--KVKIKHGLAADSLK-ALILNGEASSYDFAFVD--------AEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       169 ~----~~--~v~~~~~d~~~~~~-~~~~~~~~~~fDlV~~d--------~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +    .+  +++|.+.|++.... ++...-.....|+|-+-        ........|+..+-..++||.+++|-|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence            1    11  47889999876432 21111011235555211        1255677899999999999999988553

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.51  E-value=2.8  Score=37.88  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  191 (272)
                      ....++.+||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---  253 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence            344567899988864 3445566677654 2279999999988776654    454321111111  1222222221   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                       .+.+|+||-....   ...+..+.+.|+++ |.++.-..
T Consensus       254 -~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 -DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             -CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence             2368988853322   23567778889887 88886543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.48  E-value=0.93  Score=41.50  Aligned_cols=83  Identities=19%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  196 (272)
                      ++||-||||  ..+...+..+.  .+.+|+..|.+++..+.+.....     .+++..+-|+.+.  +..++     ..+
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~   69 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF   69 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence            579999994  44444444432  13699999999887766655431     2688888887663  33332     456


Q ss_pred             EEEEEcCCccchHHHHHHH
Q 024097          197 DFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~  215 (272)
                      |+|+...+......+++.|
T Consensus        70 d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          70 DLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CEEEEeCCchhhHHHHHHH
Confidence            9998766544333444443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=91.46  E-value=1  Score=40.14  Aligned_cols=92  Identities=14%  Similarity=0.105  Sum_probs=59.0

Q ss_pred             EEEEcCccCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      |+|+.||.|..+..+.++   +.+ +.++|+++.+.+.-+.|+.     +  .++.+|..+....-     ...+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence            689999999999988764   344 5789999998887777652     1  34567776654321     245898875


Q ss_pred             cCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          202 DAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       202 d~~------------~~~-----~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+            ..+     ...++ .+.+.++| -++++.|+.
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~P-~~~v~ENV~  110 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIV-RILKEKKP-KFFLLENVK  110 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHH-HHHhhcCC-CEEEeeccH
Confidence            432            011     11222 23345677 478888885

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=91.40  E-value=5.3  Score=35.46  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHH-HHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..+++|+-||+  |..+..+++.+.  ...+|+.++.+++.. +.+++    .+.    ...  +..+....+      .
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~~~~~l------~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAV--PLDELLELL------N  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEE--eHHHHHHHH------h
Confidence            46789999988  445555444432  135799999998654 33332    232    222  122222222      4


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||...........+..+.+..+.++.+++|-.
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence            579999876654443444444443334677888744

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.32  E-value=1.5  Score=38.67  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++|.=||+|.  .+..++..+...   .+|+++|.+++..+.+++    .+...  . ...+..+    .     -...|
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~----~-----~~~aD   68 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAE----A-----VKGAD   68 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHH----H-----hcCCC
Confidence            4788888764  444444433212   379999999887665543    33211  1 1111111    1     14568


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +|++..+......+++.+...+++|++++
T Consensus        69 vViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         69 LVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            88887765555666677777777776443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=91.29  E-value=2.6  Score=36.73  Aligned_cols=103  Identities=17%  Similarity=0.242  Sum_probs=72.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHH-CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.|+-+| ---..+++++.. +|  -+|..+|+++..+....+..++.|.. +++.+.-|....+|+-.    ...|
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~----~~kF  222 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL----KRKF  222 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH----HhhC
Confidence            3567899999 444555554432 33  58999999999999999999888986 48888888777555432    3789


Q ss_pred             EEEEEcCC--ccchHHHHHHHHccCCCC---cEEEEe
Q 024097          197 DFAFVDAE--KRMYQEYFELLLQLIRVG---GIIVID  228 (272)
Q Consensus       197 DlV~~d~~--~~~~~~~l~~~~~lLkpg---G~lvi~  228 (272)
                      |+++.|.+  ......|+..=...|+.-   |++-+.
T Consensus       223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT  259 (354)
T COG1568         223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT  259 (354)
T ss_pred             CeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence            99888876  334555666555666665   666553

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=91.19  E-value=2.1  Score=39.37  Aligned_cols=103  Identities=18%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             hcCCCEEEEEc-Cc-cCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHh----CCCCCEEEEE----cChhHHHH
Q 024097          117 ILGAQRCIEVG-VY-TGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSLK  185 (272)
Q Consensus       117 ~~~~~~VLEiG-~G-~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~  185 (272)
                      ..++.+|+=+| +| .|..+..+++..+. ..+|+++|.+++.++.+++.+...    |..  ..++.    .+..+.+.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence            34567888887 33 67777777876531 237999999999988887753211    211  12221    12222222


Q ss_pred             HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+.   +...+|+||.....   ...+....+.++++|.+++
T Consensus       251 ~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         251 ELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             HHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            221   12468988865432   3457778889998886554

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.11  E-value=3.7  Score=37.44  Aligned_cols=112  Identities=17%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH-------HHHhCC-CCCEEEEEcChhHH--HH
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK  185 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~~~-~~~v~~~~~d~~~~--~~  185 (272)
                      ...+.....|+|+|.|......+.... ...-+|+++.....+.|..+       .+..|- .+.++.+++++.+.  ..
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            345678899999999999888877654 34568888877665555332       222343 34588889988763  22


Q ss_pred             HHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      .+     ....++||++...-+  ..--+++++.-+++|-.|+-.+-+..
T Consensus       268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HH-----hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence            23     356789998765222  22234577888899999998766654

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=90.91  E-value=1.4  Score=35.50  Aligned_cols=100  Identities=21%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             EcCccCHHHHHHHHHCCCCcEEEEEeCCh--hHHHH---HHHHHHHhCCCCCEEEE-EcChhHHHHHHHhCCCCCceEEE
Q 024097          126 VGVYTGYSSLAIALVLPESGCLVACERDA--RSLEV---AKKYYERAGVSHKVKIK-HGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       126 iG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ||=|.=.+++.|++..+...+++++-.+.  +..+.   +.++++..... .+++. --|+........  .....||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~--~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFR--LKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCccccccc--ccCCcCCEE
Confidence            67777778888998876455666655544  33222   33455444222 23333 335544332220  024789999


Q ss_pred             EEcCCcc----------------chHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEKR----------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~~----------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +-+.+..                -...+|+.+.++|+++|.|.+.
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9775521                1356888889999999999986

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.90  E-value=4.9  Score=37.25  Aligned_cols=105  Identities=10%  Similarity=0.175  Sum_probs=57.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC------CC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA  193 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~------~~  193 (272)
                      ++|.=||.|.  .+..+|..+. .+.+|+++|++++.++..+     .+.   +.+...+..+.+......+      ..
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            4677777764  3333333332 2468999999998776422     121   2222222222222111100      01


Q ss_pred             CceEEEEEcCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          194 SSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       194 ~~fDlV~~d~~~----------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      ...|+||+..+.          ......++.+.+.+++|.++|.......|.
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA  125 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence            256899876553          234555677888899988887766655553

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.84  E-value=1.3  Score=33.88  Aligned_cols=95  Identities=13%  Similarity=0.051  Sum_probs=47.5

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHH-HHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ..++...+..+|+|+|.|.=... ..|.+.   +..|+++|+++.       ... .    .+.++.-|..+--..+   
T Consensus         6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~i---   67 (127)
T PF03686_consen    6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEI---   67 (127)
T ss_dssp             HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred             HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-c----CcceeeecccCCCHHH---
Confidence            33444556679999999875544 344443   479999999986       111 2    3667777776622222   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        -...|+|++--+.......+-.+.+.  -|.-+++.
T Consensus        68 --Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii~  101 (127)
T PF03686_consen   68 --YEGADLIYSIRPPPELQPPILELAKK--VGADLIIR  101 (127)
T ss_dssp             --HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEEE
T ss_pred             --hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEEE
Confidence              15789999876655555555555543  34455554

; PDB: 2K4M_A.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.69  E-value=0.81  Score=32.65  Aligned_cols=85  Identities=15%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             EEEEcCccCHHHHHHHHHCC-CC---cEEE-EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          123 CIEVGVYTGYSSLAIALVLP-ES---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~-~~---~~v~-~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      |.=||+  |..+..+++.+- .+   .+|+ +.+.+++..+...+.+   +    +.+...+..+...         ..|
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~---------~ad   63 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ---------EAD   63 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH---------HTS
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc---------cCC
Confidence            334554  666666665542 12   5888 5599998776555433   2    3444434545443         469


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +||+........+.++.+ ..+.++..++
T Consensus        64 vvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   64 VVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             EEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             EEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            999998888888888888 6666666554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.64  E-value=3.4  Score=37.28  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=59.7

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  191 (272)
                      ....++.+||=.|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            345577899988864 3445555666654 2379999999988777644    454211111110  1112222221   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                       .+.+|+++-....   ...+..+.+.+++| |.+++-..
T Consensus       255 -~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 -GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence             2368977743222   23566677888996 99887544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=90.59  E-value=4.2  Score=36.14  Aligned_cols=100  Identities=26%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+||=.|+| .|..+..+++..+ ..++++++.+++..+.+++    .+...-+.....+....+..+.   ....
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~~  235 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGRG  235 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCCC
Confidence            3456777766653 2334444566543 2578999998877665553    3443222322223322222221   1346


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|+|+-...   ....++.+.+.|+++|.++.
T Consensus       236 ~d~vld~~g---~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         236 VDVVIEAVG---IPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             CCEEEECCC---CHHHHHHHHHhccCCcEEEE
Confidence            998874322   22357778899999999985

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=90.56  E-value=3.1  Score=37.05  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=60.0

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh---hHHHHHHH
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI  188 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~  188 (272)
                      .....++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++    .+...-+.....+.   .+.+....
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence            34455678888777654 666677777754  45 8999888877766644    23321111111121   11122211


Q ss_pred             hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                         ....+|+|+-....   ...+....+.|+++|.++.-
T Consensus       231 ---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 ---GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             ---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence               13459988854332   12567788899999998864

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.40  E-value=1.9  Score=38.31  Aligned_cols=109  Identities=15%  Similarity=0.161  Sum_probs=65.9

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE--EcChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~  191 (272)
                      +...++.+|.-+|+|. |.....-++..+ .+++++||++++..+.|++    .|..+-+.-.  .....+.+.+.-   
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmT---  259 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMT---  259 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHh---
Confidence            4456788999999875 444444555544 6799999999999998876    4544322222  112444444442   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCCCCCCc
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHGK  235 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~~~~g~  235 (272)
                       ++.+|+-|-...   ..+.+.+++...++| |.-++-.+.-.|.
T Consensus       260 -dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~~~~  300 (375)
T KOG0022|consen  260 -DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAAAGQ  300 (375)
T ss_pred             -cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecCCCc
Confidence             467888883322   223455555556677 7666655554444

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=90.38  E-value=3.2  Score=37.07  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=61.0

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||=.|+| .|..+..+++..  +. +|++++.+++..+.+++    .|...-+.....+..+.+....   .
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~  238 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G  238 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence            344567788888754 344555566664  35 89999999888777654    3432212222223333222221   1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...+|+|+-....   ...++.+.+.|+++|.++.-..
T Consensus       239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence            2459998854332   2356778889999999887443

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=90.38  E-value=1.1  Score=38.35  Aligned_cols=114  Identities=21%  Similarity=0.295  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      +....++..+-..+.... +..=.|+=.++..+   +.+.-+.+.+|+.+.-.+..++++..   ..++++++.|..+.+
T Consensus        44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~l---lR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l  116 (245)
T PF04378_consen   44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARL---LREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL  116 (245)
T ss_dssp             GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHH---S-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHh---CCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence            344455555544443333 33333333333333   34467999999999999888887753   247999999999977


Q ss_pred             HHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCC--CCcEEEE
Q 024097          185 KALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVI  227 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLk--pgG~lvi  227 (272)
                      ..+...  ...=-+|+||.+   +.++....+.+.+.++  +.|++++
T Consensus       117 ~allPP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  117 KALLPP--PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHH-S---TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             hhhCCC--CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence            665432  234569999986   4455555555544444  5676654

; PDB: 2OO3_A.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.26  E-value=1.7  Score=38.88  Aligned_cols=99  Identities=18%  Similarity=0.101  Sum_probs=65.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC-ceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~-~fDl  198 (272)
                      ..+++|+-||.|...+.+..+-  ---+.++|+++.+++.-+.|+..      -.++..|..+....-.    .. .+|+
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dv   70 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDV   70 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCE
Confidence            3589999999999998888752  23589999999988877776632      3556666665433211    12 7898


Q ss_pred             EEEcCCc--------c--------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAEK--------R--------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~--------~--------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ++-..+.        .        ...-.+.++...++| -.+++.||-
T Consensus        71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          71 LIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence            8754331        1        111234445667788 889999885

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=90.24  E-value=2.6  Score=39.19  Aligned_cols=104  Identities=14%  Similarity=0.248  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH--------HhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE--------RAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ++++|-=||.  |+.++.+|..+..+.+|+++|++++.++..++...        +.....++.+. .+. +.   .   
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~~---~---   74 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-EK---I---   74 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-HH---H---
Confidence            3456766655  77777777777656789999999988776552110        00000111111 111 11   1   


Q ss_pred             CCCCceEEEEEcCCcc-------c---hHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          191 GEASSYDFAFVDAEKR-------M---YQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~-------~---~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                         ...|++|+.-+.+       +   .....+.+.+.|++|.++|......+|.
T Consensus        75 ---~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         75 ---KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC  126 (425)
T ss_pred             ---cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence               4568888654321       2   2223456678899988888877776664

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.18  E-value=4.1  Score=33.75  Aligned_cols=91  Identities=13%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                   ...+.+.+.++..+..-+++.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999973 443333333333 36899999872                   334455566655443323444443


Q ss_pred             ChhH-HHHHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097          179 LAAD-SLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       179 d~~~-~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~  215 (272)
                      ...+ .+..+     -..||+|+...+.......+.+.
T Consensus        99 ~i~~~~~~~~-----~~~~D~Vi~~~d~~~~r~~l~~~  131 (202)
T TIGR02356        99 RVTAENLELL-----INNVDLVLDCTDNFATRYLINDA  131 (202)
T ss_pred             cCCHHHHHHH-----HhCCCEEEECCCCHHHHHHHHHH
Confidence            3322 22222     25799998655433333334433

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=90.17  E-value=1.7  Score=40.02  Aligned_cols=102  Identities=14%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH---hCC-----CCCEEEEEc-ChhHHHHHHHhCCC
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHG-LAADSLKALILNGE  192 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~-----~~~v~~~~~-d~~~~~~~~~~~~~  192 (272)
                      +|-=||+  |+.+..++..+..+.+|+++|++++.++..++....   .++     ..+.++... +..+.         
T Consensus         2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------   70 (388)
T PRK15057          2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------   70 (388)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence            3444555  555555554443356899999999998776652110   000     011222211 11111         


Q ss_pred             CCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          193 ASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      ....|+||+.-+..           .....++.+.+ +++|.++|......+|.
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF  123 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence            13568888754421           23344566666 68888887776666654

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.07  E-value=4.4  Score=36.51  Aligned_cols=103  Identities=16%  Similarity=0.292  Sum_probs=59.7

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~  192 (272)
                      ...++.+||=+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.    
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence            34567899988874 3445556677654 2379999999888777644    344221111111  1122222221    


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                      ...+|+||-....   ...+....+.++++ |.++.-..
T Consensus       252 ~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence            2468988843322   23567788889885 88876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.96  E-value=6.7  Score=32.57  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~  193 (272)
                      ++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+...   .++.++.+|..+.  +..+.+..  .-
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45789988875 55666666655 34679999999987665554444322   2578888887642  11111100  02


Q ss_pred             CceEEEEEcCCcc------c--------------hHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR------M--------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~------~--------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.+|.++......      .              ....++.+.+.++++|.+++-
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~  134 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV  134 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence            4578887654311      0              112244555667778876654

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.79  E-value=3.1  Score=35.59  Aligned_cols=94  Identities=20%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||-.|+|. |..+..+++..+  .+ |++++.+++..+.+++    .|..+.+...    .+..  .    .
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~----~~~~--~----~  156 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAAD----TADE--I----G  156 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCcccccc----chhh--h----c
Confidence            3445678888888764 666677777764  45 9999999888776554    2311111111    0000  0    1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ...+|+||.....   ...++...+.|+++|.++.
T Consensus       157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            3568988854332   2356777888999998875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06940 short chain dehydrogenase; Provisional

Probab=89.60  E-value=4.6  Score=34.87  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC-CCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~~fD  197 (272)
                      +.+|=.|+  |..+..+++.+..+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+... .+.+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            35565564  56888888888667899999998876665555554333  3577888887552  1222111 0125789


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      .++..+.
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            9987654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=89.59  E-value=2.1  Score=36.96  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=47.3

Q ss_pred             HHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHH
Q 024097          134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE  213 (272)
Q Consensus       134 ~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~  213 (272)
                      ++.+.+. +...+|+++|.+++..+.|++    .|..+.   ...+ .+   .+      ..+|+|++..+......+++
T Consensus         2 A~aL~~~-g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~---~~------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    2 ALALRKA-GPDVEVYGYDRDPETLEAALE----LGIIDE---ASTD-IE---AV------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHHT-TTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-HH---HG------GCCSEEEE-S-HHHHHHHHH
T ss_pred             hHHHHhC-CCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-Hh---Hh------cCCCEEEEcCCHHHHHHHHH
Confidence            3444444 336799999999998877654    455432   1111 12   22      45799999988888888999


Q ss_pred             HHHccCCCCcEEEEe
Q 024097          214 LLLQLIRVGGIIVID  228 (272)
Q Consensus       214 ~~~~lLkpgG~lvi~  228 (272)
                      ++.+.+++|+ +++|
T Consensus        64 ~~~~~~~~~~-iv~D   77 (258)
T PF02153_consen   64 EIAPYLKPGA-IVTD   77 (258)
T ss_dssp             HHHCGS-TTS-EEEE
T ss_pred             HhhhhcCCCc-EEEE
Confidence            9999888875 4444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.57  E-value=2.6  Score=37.34  Aligned_cols=95  Identities=21%  Similarity=0.274  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++.+||-.|+|. |..+..+++..+ -.++++++.+++..+.+++    .+..   .++..+-.. +.....  ..+.+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~vd  233 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDFD  233 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCcc
Confidence            678888888764 556666777653 1279999998887765544    2332   122111111 111111  124599


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +++-....   ...++.+.+.|+++|.++.
T Consensus       234 ~vld~~g~---~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         234 VVFEASGA---PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             EEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            98854332   2357778899999999885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK08114 cystathionine beta-lyase; Provisional

Probab=89.42  E-value=17  Score=33.45  Aligned_cols=131  Identities=14%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCC-hhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      -+|....+-..+.....+...+-+.+|++.....+...+.++.+|++.+.. .......++.+++.|..  ++++...-.
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCH
Confidence            346555566666666677788889998888777666666667788776532 34455555666666652  555532212


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCC---CCcEEEEeCCCCCCcccCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIR---VGGIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLk---pgG~lvi~d~~~~g~~~~~  239 (272)
                      +.+....    ...-.+|++......  ....++.+.++.+   +|-.+++||+...+...+|
T Consensus       138 ~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p  196 (395)
T PRK08114        138 ADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA  196 (395)
T ss_pred             HHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCH
Confidence            2233222    234578888765211  1112333333333   4578889998877765554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.38  E-value=4.8  Score=36.26  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCCEEEE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK  176 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~~~~~~v~~~  176 (272)
                      ...+|+=||||. |......+...+ -++++.+|.+.                     ...+.+++.+++.+..-+++.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            456899999973 333322222222 35899999874                     2345566677666554456666


Q ss_pred             EcChh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097          177 HGLAA-DSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       177 ~~d~~-~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ..+.. +.+..+     -..+|+|+...+
T Consensus       102 ~~~~~~~~~~~~-----~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEEL-----VKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence            65553 223333     256899886554

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.25  E-value=1.2  Score=39.36  Aligned_cols=94  Identities=11%  Similarity=0.043  Sum_probs=53.5

Q ss_pred             CEEEEEcCcc--CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC----CCEEEEEcChhHHHHHHHhCCCCC
Q 024097          121 QRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       121 ~~VLEiG~G~--G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ++|+=+|+|.  |+++..|++.   +..|+.++.+++.++..++.   .|+.    ............  +     ...+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~-----~~~~   69 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A-----DAAE   69 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c-----cccc
Confidence            4788899873  4444555542   45799999987555444331   1221    000010000000  0     0135


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .||+||+..-..+....++.+.+++.++..++.
T Consensus        70 ~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         70 PIHRLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             ccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            899999876555566778888889988886653

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=89.21  E-value=0.33  Score=40.62  Aligned_cols=88  Identities=13%  Similarity=0.024  Sum_probs=62.5

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~  193 (272)
                      +...++...+|.--|.|..+..+.+..+ ..++++.|.+|-+.+.|+...... ...++..+.+.+.....-+.+.+ .+
T Consensus        39 lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~~~gl~~  116 (303)
T KOG2782|consen   39 LSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIADTGLLD  116 (303)
T ss_pred             cCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHHHhCCCc
Confidence            3445778999999999999999999987 688999999999988887765422 22344445555544322223333 46


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      ..+|-|++|..
T Consensus       117 ~~vDGiLmDlG  127 (303)
T KOG2782|consen  117 VGVDGILMDLG  127 (303)
T ss_pred             CCcceEEeecC
Confidence            78999998765

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=89.21  E-value=5.9  Score=35.76  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++||-.|+| .|..+..+++..  +.++++++.+++....+   .+..|...  .+...+. +.+...     .+.+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~~--vi~~~~~-~~~~~~-----~~~~  248 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGADS--FLVSTDP-EKMKAA-----IGTM  248 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCcE--EEcCCCH-HHHHhh-----cCCC
Confidence            467788888875 455666677765  46788888876543222   12244321  1111111 122222     1358


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |+||-...   ....++.+.+.|++||.++.-.
T Consensus       249 D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        249 DYIIDTVS---AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence            98884322   2235777889999999998643

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=89.13  E-value=7.7  Score=34.21  Aligned_cols=102  Identities=21%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             HHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~  191 (272)
                      .....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++    .|...-+.... .+..+.+...    
T Consensus       157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----  227 (338)
T PRK09422        157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----  227 (338)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence            3445567889888854 3445555666532 5689999999988777743    34421111110 1111222222    


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       .+.+|.++.+...   ...++.+.+.|+++|.++.-
T Consensus       228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence             1357877766432   24578889999999998863

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=89.09  E-value=4  Score=36.79  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++    .+...-+.....+..+.+....    ..
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~  253 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----GG  253 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CC
Confidence            34567888888765 3556666777764 2369999999887766644    3432111111112222222221    24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+|+-.....   ..+..+.+.|+++|.++.-
T Consensus       254 ~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         254 GVDYALDTTGVP---AVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence            689887543221   3567788889999998863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=88.97  E-value=8.5  Score=35.36  Aligned_cols=131  Identities=16%  Similarity=0.207  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeC-ChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      -+|....+-..+.....+..++=..+|.+..+..+...++++.+|+..+. -.......++.+...|+.  +.++..+-.
T Consensus        53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d~  130 (386)
T PF01053_consen   53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTDL  130 (386)
T ss_dssp             C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTSH
T ss_pred             ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchhH
Confidence            45666666667777777888888999888887777777776778877764 344455566666666643  555544223


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCC--cEEEEeCCCCCCcccCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVG--GIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpg--G~lvi~d~~~~g~~~~~  239 (272)
                      +.+....    ....++||+..+..  .....++.+.++.+..  -.+++||..-.+...+|
T Consensus       131 ~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p  188 (386)
T PF01053_consen  131 EALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP  188 (386)
T ss_dssp             HHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G
T ss_pred             HHHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc
Confidence            3333332    35789999876522  2223355555555554  47778887755544444

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=88.97  E-value=3.1  Score=36.38  Aligned_cols=90  Identities=24%  Similarity=0.269  Sum_probs=53.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++|+=+|.  |..+.++++.+.   ....+++.|.+....+.+.+    .|..+    ...+... ...      ....|
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~~~~-~~~------~~~aD   66 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTVAGL-AEA------AAEAD   66 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----ccccchh-hhh------cccCC
Confidence            46777775  555555555443   23456788887766554432    33322    1111100 111      25689


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+..+.....++++++.+.|++|. ++.|
T Consensus        67 ~VivavPi~~~~~~l~~l~~~l~~g~-iv~D   96 (279)
T COG0287          67 LVIVAVPIEATEEVLKELAPHLKKGA-IVTD   96 (279)
T ss_pred             EEEEeccHHHHHHHHHHhcccCCCCC-EEEe
Confidence            99999998888889999988888866 4444

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=88.91  E-value=8.3  Score=33.09  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+....++..+-..+++.+ |..=+|+-..+..+.+.   .-++..+|..|+-....+++|.  + ..++++..+|..
T Consensus        72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~  144 (279)
T COG2961          72 DLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGF  144 (279)
T ss_pred             CchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcH
Confidence            456677777777766666655 77778877776666653   5599999999999998888885  2 347999999988


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc---cchHHHHHHHHccCC--CCcEEEE
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIR--VGGIIVI  227 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~---~~~~~~l~~~~~lLk--pgG~lvi  227 (272)
                      ..+...+..  .+.=-+|++|.+.   .+|....+.+.+.++  ++|+.+|
T Consensus       145 ~~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai  193 (279)
T COG2961         145 LALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI  193 (279)
T ss_pred             HHHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence            766544322  2445799999883   345444444443333  4555554

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.67  E-value=5.6  Score=33.54  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+|+=+||| .|......+...+ -++++.+|.+                   ....+.+++++++.+..-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            45689999997 3443333333334 4678888543                   3345666777766654434666554


Q ss_pred             Chh-HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097          179 LAA-DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL  214 (272)
Q Consensus       179 d~~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~  214 (272)
                      ... +....+     -..+|+|+...+.......+.+
T Consensus        99 ~i~~~~~~~~-----~~~~DvVi~~~d~~~~r~~l~~  130 (228)
T cd00757          99 RLDAENAEEL-----IAGYDLVLDCTDNFATRYLIND  130 (228)
T ss_pred             eeCHHHHHHH-----HhCCCEEEEcCCCHHHHHHHHH
Confidence            442 222333     2469999976553333333443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=88.64  E-value=5.5  Score=34.41  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             hhcCCCEEEEE--cCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEV--GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEi--G~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      +..++..||--  ..|.|.....+++..  +.+++++--+.+..++|++    +|..+-|.....|..+....+.   ..
T Consensus       143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiT---ng  213 (336)
T KOG1197|consen  143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKIT---NG  213 (336)
T ss_pred             CCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhcc---CC
Confidence            44567777654  345666666777765  4788888888888777766    5666667777666666554431   23


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ...|.++-.-.+.    .++.-+..||++|.+|-
T Consensus       214 KGVd~vyDsvG~d----t~~~sl~~Lk~~G~mVS  243 (336)
T KOG1197|consen  214 KGVDAVYDSVGKD----TFAKSLAALKPMGKMVS  243 (336)
T ss_pred             CCceeeeccccch----hhHHHHHHhccCceEEE
Confidence            5688887443333    36667788999999985

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=88.58  E-value=6.1  Score=35.61  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~  192 (272)
                      ...++.+||=.|+| .|..+..+++..+ ...|++++.+++..+.+++    .|...-+.....  +..+.+..+.    
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----  250 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence            44567888888764 3444455666654 2358899988887766643    344321222222  2222222221    


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCC-CCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLk-pgG~lvi~d  229 (272)
                      .+.+|+|+-....   ...+..+.+.|+ ++|.++.-.
T Consensus       251 ~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         251 DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEEe
Confidence            2468988843221   245677888899 999998643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.55  E-value=2.3  Score=37.82  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             cCCCEEEEEcC-ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|--+|. |-|..+..+|++++  .+|+++|.+...-+.+   ++..|-+.-+.+. .| .+.....     .+..
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d-~d~~~~~-----~~~~  247 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEA---IKSLGADVFVDST-ED-PDIMKAI-----MKTT  247 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHH---HHhcCcceeEEec-CC-HHHHHHH-----HHhh
Confidence            36778777774 47999999999985  8999999997544433   4445654322222 11 2333333     1344


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |.++.... .-....++.+.++||++|.+|+-.+
T Consensus       248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             cCcceeee-eccccchHHHHHHhhcCCEEEEEeC
Confidence            44432111 0022346777889999999998543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.17  E-value=3  Score=36.36  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +|.=||+|  ..+..++..+. .+.+|+++|.+++..+.+.+    .+.   +.....+. +   .      -...|+||
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~---~------~~~aDlVi   62 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-S---L------LKDCDLVI   62 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-h---H------hcCCCEEE
Confidence            45667764  45444444432 24589999999887766543    222   11111111 1   1      14578998


Q ss_pred             EcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          201 VDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+.....+.++.+.+.++++. ++.|
T Consensus        63 lavp~~~~~~~~~~l~~~l~~~~-ii~d   89 (279)
T PRK07417         63 LALPIGLLLPPSEQLIPALPPEA-IVTD   89 (279)
T ss_pred             EcCCHHHHHHHHHHHHHhCCCCc-EEEe
Confidence            88776666677777777777764 4443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=88.04  E-value=3.6  Score=38.40  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +|.=|| |.|..+..++..+.. +.+|+++|.+++.....   ....+.    .+ ..+..+.         -...|+||
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~---------~~~aDvVI   63 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA---------AKDADIVI   63 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH---------hccCCEEE
Confidence            566676 346666666665432 45899999987654221   111232    11 1122111         13568888


Q ss_pred             EcCCccchHHHHHHHHccCCCCcE
Q 024097          201 VDAEKRMYQEYFELLLQLIRVGGI  224 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkpgG~  224 (272)
                      +..+.......++.+.+.+++|.+
T Consensus        64 lavp~~~~~~vl~~l~~~l~~~~i   87 (437)
T PRK08655         64 ISVPINVTEDVIKEVAPHVKEGSL   87 (437)
T ss_pred             EecCHHHHHHHHHHHHhhCCCCCE
Confidence            776655556667777777776653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.80  E-value=5.1  Score=37.25  Aligned_cols=96  Identities=19%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .++|+=+|+  |..+..+++.+.. +..|+.+|.+++.++..++..      ..+.++.||+.+. ..+.. .+-..+|.
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~-~~~~~a~~  300 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEE-EGIDEADA  300 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHh-cCCccCCE
Confidence            567888777  7777777777643 568999999999877655532      1367899998653 11211 12467888


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGII  225 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~l  225 (272)
                      |++........-....+.+.+.+.-++
T Consensus       301 vi~~~~~~~~n~~~~~~~~~~~~~~ii  327 (453)
T PRK09496        301 FIALTNDDEANILSSLLAKRLGAKKVI  327 (453)
T ss_pred             EEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence            887544222222233333445454333

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.55  E-value=5.8  Score=36.85  Aligned_cols=95  Identities=15%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.   .    .+.++.||+.+.. .+... +-..+|.|+
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~-~l~~~-~~~~a~~vi   70 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPD-VLREA-GAEDADLLI   70 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHH-HHHHc-CCCcCCEEE
Confidence            5676766  788888888764 356899999999876655431   1    3788889886521 11111 135788888


Q ss_pred             EcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          201 VDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +..........+....+.+.|.-.+++
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            765433333334344445534433333

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.55  E-value=6.5  Score=34.68  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+++|+=||+|. |......++.+  +.+|+.+|.+++..+.++    ..+.    ++.  +. +.+...     -..+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~-----l~~aD  212 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE-----VGKID  212 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH-----hCCCC
Confidence            578999999863 33333334433  469999999977544433    2332    222  11 222222     25789


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      +||...+..   -.-+...+.++||++ ++|-...+|.
T Consensus       213 iVI~t~p~~---~i~~~~l~~~~~g~v-IIDla~~pgg  246 (296)
T PRK08306        213 IIFNTIPAL---VLTKEVLSKMPPEAL-IIDLASKPGG  246 (296)
T ss_pred             EEEECCChh---hhhHHHHHcCCCCcE-EEEEccCCCC
Confidence            999754321   233556677888764 5554444444

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=87.50  E-value=0.98  Score=33.48  Aligned_cols=33  Identities=9%  Similarity=-0.035  Sum_probs=24.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA  154 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~  154 (272)
                      +....+|||||.|...--|.+.   +.+=.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            4557999999999887766652   45668888743

; GO: 0008168 methyltransferase activity

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.50  E-value=5.1  Score=35.48  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ....+.+||=.|+| .|..+..+++..  +.+++.++.+++..+.+++    .|...-+.....+..+.+...      .
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------~  227 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------G  227 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc------C
Confidence            44567789888854 344555566665  4689999999887766643    343211111111222222211      3


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+++....   ....++...+.|+++|.++.-
T Consensus       228 ~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         228 GAKLILATAP---NAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             CCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence            5898874321   124577788899999998863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=87.44  E-value=12  Score=33.26  Aligned_cols=99  Identities=18%  Similarity=0.226  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++.+||-.|+| .|..+..+++..+  .+ |++++.+++..+.+++    .+...-+.....+..+.+..+.   +...
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~~  230 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGEG  230 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCCC
Confidence            456777766654 3555566677653  54 8888887766655543    3432112222223333222221   1356


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+|+-....   ...+..+.+.|+++|.++.-
T Consensus       231 ~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       231 VDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            8988864332   23567788889999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.30  E-value=2  Score=41.82  Aligned_cols=95  Identities=19%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      .+|+=  ||.|..+..+++.+. .+.+++.+|.|++.++.+++    .|    ..++.||+.+.  +...+.+-++.|.+
T Consensus       401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~--~~L~~agi~~A~~v  468 (601)
T PRK03659        401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL--ELLRAAGAEKAEAI  468 (601)
T ss_pred             CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH--HHHHhcCCccCCEE
Confidence            35665  455777777776653 34689999999998887654    23    57899998762  22222223577888


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ++..+........-...+.+.|...++.
T Consensus       469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        469 VITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             EEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            7654433222223233445667766665

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.26  E-value=7.7  Score=33.87  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=53.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--------CCC---------CCEEEEEcChhHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS  183 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~  183 (272)
                      ++|.=||+|.=..++...-.. .+.+|+.+|.+++.++.+++.+++.        ...         .++++. .|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence            467778886433333322221 2568999999999888877654321        110         123322 222211


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEEEE
Q 024097          184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi  227 (272)
                               -...|+||...+..  ....+++.+.+.++++.+|+.
T Consensus        82 ---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                     14568888765522  345667777777777665543

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.18  E-value=8  Score=29.07  Aligned_cols=88  Identities=9%  Similarity=0.016  Sum_probs=53.9

Q ss_pred             HHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          113 MLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~-~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .++......+|+|+|.|.=. .+..++++   +..++++|+++.          ..+  .-++++.-|..+---.+    
T Consensus         7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~----------~a~--~g~~~v~DDitnP~~~i----   67 (129)
T COG1255           7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK----------TAP--EGLRFVVDDITNPNISI----   67 (129)
T ss_pred             HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc----------cCc--ccceEEEccCCCccHHH----
Confidence            34445566799999987543 33344443   468999999875          122  23788888876521111    


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIR  220 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLk  220 (272)
                       -...|+|++--+.+.....+-.+.+.++
T Consensus        68 -Y~~A~lIYSiRpppEl~~~ildva~aVg   95 (129)
T COG1255          68 -YEGADLIYSIRPPPELQSAILDVAKAVG   95 (129)
T ss_pred             -hhCccceeecCCCHHHHHHHHHHHHhhC
Confidence             2467999987665555555555555443

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=87.15  E-value=10  Score=33.60  Aligned_cols=101  Identities=23%  Similarity=0.313  Sum_probs=58.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.+++    .+...-+...... .+.+....   .
T Consensus       155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~-~~~~~~~~---~  224 (343)
T cd08236         155 AGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARE----LGADDTINPKEED-VEKVRELT---E  224 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----cCCCEEecCcccc-HHHHHHHh---C
Confidence            3445677888888754 666677777754  44 9999888776655532    3432111111111 12222221   1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+|+++-....   ...+..+.+.|+++|.++.-
T Consensus       225 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         225 GRGADLVIEAAGS---PATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            2459988854321   23567788899999998754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=87.00  E-value=1.9  Score=38.29  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+|+||+........+.++.+..++++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            6799999876655566677888888888887653

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=86.97  E-value=6.5  Score=35.37  Aligned_cols=99  Identities=23%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++.+||-.|+| .|..+..+++..+  .+ +++++.+++..+.+++    .+...-+.....+..+.+....   ....
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~  256 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGRG  256 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCCC
Confidence            456788766654 4555566676654  45 9999988877665543    3432111111112222222221   1356


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+|+-.....   ..++.+.+.|+++|.++.-
T Consensus       257 ~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~  286 (367)
T cd08263         257 VDVVVEALGKP---ETFKLALDVVRDGGRAVVV  286 (367)
T ss_pred             CCEEEEeCCCH---HHHHHHHHHHhcCCEEEEE
Confidence            99888432221   2567788899999998853

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=86.97  E-value=3.1  Score=36.39  Aligned_cols=92  Identities=13%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC-----CCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      +|+=||+|.-...+.  ..+. .+..|+.++. ++.++..++    .++.     ....+ ...........     ...
T Consensus         2 kI~IiG~G~iG~~~a--~~L~~~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~-----~~~   68 (305)
T PRK12921          2 RIAVVGAGAVGGTFG--GRLLEAGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEEL-----TGP   68 (305)
T ss_pred             eEEEECCCHHHHHHH--HHHHHCCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHc-----cCC
Confidence            577788875443333  2221 1457999988 655544332    2321     00111 00011111111     267


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +|+||+..........++.+.+.+.++.+++
T Consensus        69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii   99 (305)
T PRK12921         69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVII   99 (305)
T ss_pred             CCEEEEEecccCHHHHHHHHHhhcCCCCEEE
Confidence            8999988776677788888888888877665

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.72  E-value=2.4  Score=40.87  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=57.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      .+++=+|  .|..+..+++.+. .+..++.+|.+++.++.+++    .    ....+.||+.+.  +..++.+-++.|.+
T Consensus       418 ~hiiI~G--~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~--~~L~~a~i~~a~~v  485 (558)
T PRK10669        418 NHALLVG--YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE--EIMQLAHLDCARWL  485 (558)
T ss_pred             CCEEEEC--CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH--HHHHhcCccccCEE
Confidence            3555554  5778888888764 24589999999988776653    2    267899999762  22221123678877


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ++..+.......+-.+.+...|...++.
T Consensus       486 iv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        486 LLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             EEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            7653322222223233344567666665

>cd05281 TDH Threonine dehydrogenase

Probab=86.58  E-value=11  Score=33.36  Aligned_cols=98  Identities=18%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++.+||-.|+|. |..+..+++..+  . +|++++.+++..+.+++    .+...-+.....+.. .+..+.   ..+.
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~---~~~~  231 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT---DGTG  231 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc---CCCC
Confidence            4567777767642 556666777654  4 78888777766655543    343211111111222 222221   1357


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+||-....   ......+.+.|+++|.++.-
T Consensus       232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence            8988854322   23466778889999998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK10083 putative oxidoreductase; Provisional

Probab=86.51  E-value=8.5  Score=33.97  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=54.8

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHH-CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||=.|+| .|..+..+++. .+ ...+++++.+++..+.+++    .|...-+.....+..+   .+...  
T Consensus       156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~---~~~~~--  225 (339)
T PRK10083        156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGE---ALEEK--  225 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHH---HHhcC--
Confidence            344567789888854 23334445553 23 2358889998887776654    3442111221112222   22111  


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+|+||-....   ...+....+.|+++|.++.-
T Consensus       226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            1235666643221   23567778899999999863

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.45  E-value=2.5  Score=41.36  Aligned_cols=95  Identities=17%  Similarity=0.129  Sum_probs=55.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      .+|+=+|+  |..+..+++.+.. +-+++.+|.|++.++.+++    .|    ..++.||+.+.  +...+.+-+..|++
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~--~~L~~agi~~A~~v  468 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM--DLLESAGAAKAEVL  468 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH--HHHHhcCCCcCCEE
Confidence            57777666  5566666665432 4589999999998887754    23    57899998763  22222123578888


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ++..+........-...+.+.|+-.++.
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            7654432222222223344456555544

>PRK08324 short chain dehydrogenase; Validated

Probab=86.25  E-value=8.4  Score=38.15  Aligned_cols=82  Identities=18%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .+++||-.|+ +|..+..+++.+ ..+.+|+.+|.+++..+.+.+.+...   .++.++.+|..+.  +....+.  ...
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3478887775 455666666554 23579999999988776655544322   3588888886542  1111110  012


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +.+|+||....
T Consensus       497 g~iDvvI~~AG  507 (681)
T PRK08324        497 GGVDIVVSNAG  507 (681)
T ss_pred             CCCCEEEECCC
Confidence            46899987654

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=86.12  E-value=6.4  Score=37.44  Aligned_cols=124  Identities=10%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCC-C
Q 024097           98 GSQMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVS-H  171 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~  171 (272)
                      ............++..++...  +...|.|.-||+|.......+.+.   ....+++-+..+.+...++.++.-.+.. +
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~  273 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA  273 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence            334455566667776666543  447899999999998876554432   1246999999999999999886555543 2


Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc----------------------------chHHHHHHHHccCCCCc
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLIRVGG  223 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~----------------------------~~~~~l~~~~~lLkpgG  223 (272)
                      ......+|.+......    ...+||.|+.+.+..                            .-..++..+...|++||
T Consensus       274 t~~~~~~dtl~~~d~~----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG  349 (501)
T TIGR00497       274 NFNIINADTLTTKEWE----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEG  349 (501)
T ss_pred             ccCcccCCcCCCcccc----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCC
Confidence            2344445544321111    124688877654310                            11245666778899988


Q ss_pred             EE
Q 024097          224 II  225 (272)
Q Consensus       224 ~l  225 (272)
                      ..
T Consensus       350 ~~  351 (501)
T TIGR00497       350 TA  351 (501)
T ss_pred             eE
Confidence            63

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=86.08  E-value=4.3  Score=35.60  Aligned_cols=79  Identities=13%  Similarity=0.182  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      ++++||-.| |+|..+..+++.+- .+.+|++++.++.............+...+++++.+|..+.  +....     ..
T Consensus         3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~   76 (322)
T PLN02662          3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV-----DG   76 (322)
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH-----cC
Confidence            346788776 47888888887763 34588888877654322222211112234689999998752  22221     35


Q ss_pred             eEEEEEcC
Q 024097          196 YDFAFVDA  203 (272)
Q Consensus       196 fDlV~~d~  203 (272)
                      +|.||..+
T Consensus        77 ~d~Vih~A   84 (322)
T PLN02662         77 CEGVFHTA   84 (322)
T ss_pred             CCEEEEeC
Confidence            79888654

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=86.06  E-value=10  Score=33.41  Aligned_cols=97  Identities=12%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             CCCEEEEE--cC-ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       119 ~~~~VLEi--G~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .+..++=+  |+ +.|..+..+++..  +.++++++.+++..+.+++    .|...-+.....+..+.+....   ....
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~  212 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN  212 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence            34455544  33 3455666677765  4689999999887776654    3433212211122322222221   1246


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+||-.....    ......+.|++||.++.-
T Consensus       213 ~d~vid~~g~~----~~~~~~~~l~~~G~~v~~  241 (324)
T cd08291         213 ATIFFDAVGGG----LTGQILLAMPYGSTLYVY  241 (324)
T ss_pred             CcEEEECCCcH----HHHHHHHhhCCCCEEEEE
Confidence            89888433221    234557788999998764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=86.05  E-value=7.2  Score=35.46  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHhCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILNG  191 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~  191 (272)
                      ...++.+||=.|+| .|..++.+++..+ ..+|++++.+++..+.+++    .|...-+.....   +..+.+..+.   
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~---  271 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT---  271 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence            34466788877764 2334455566553 2279999998876555544    454221111111   2222222221   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ....+|+|+-...  .....++.+.+.|+++|.++.-
T Consensus       272 ~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 KGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEE
Confidence            1346898874322  2234577788889999999863

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PLN02256 arogenate dehydrogenase

Probab=86.05  E-value=9.9  Score=33.68  Aligned_cols=89  Identities=17%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      +.++|.=||+  |..+..++..+.. +.+|+++|.++. .+.+    ...|.    .. ..+..+..        ....|
T Consensus        35 ~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--------~~~aD   94 (304)
T PLN02256         35 RKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--------EEHPD   94 (304)
T ss_pred             CCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh--------hCCCC
Confidence            4567888886  4555555554422 358999999863 2222    22332    22 22222221        13468


Q ss_pred             EEEEcCCccchHHHHHHH-HccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQEYFELL-LQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~-~~lLkpgG~lvi~  228 (272)
                      +||+..+......+++.+ ...+++|. +++|
T Consensus        95 vVilavp~~~~~~vl~~l~~~~l~~~~-iviD  125 (304)
T PLN02256         95 VVLLCTSILSTEAVLRSLPLQRLKRST-LFVD  125 (304)
T ss_pred             EEEEecCHHHHHHHHHhhhhhccCCCC-EEEe
Confidence            888877666666777776 45677765 4444

>PLN02494 adenosylhomocysteinase

Probab=85.96  E-value=5.5  Score=37.48  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.+         ...
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A  310 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA  310 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence            3578999999873 43444444444  4689999999865433322    232    222  222222         356


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|+........  +....+..+|+||+|+.-
T Consensus       311 DVVI~tTGt~~v--I~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        311 DIFVTTTGNKDI--IMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             CEEEECCCCccc--hHHHHHhcCCCCCEEEEc
Confidence            998874432221  346778899999988864

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=85.90  E-value=2  Score=36.43  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             ccCHHHHH--HHHHC-CCCcEEEEEeCChhHH--HHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097          129 YTGYSSLA--IALVL-PESGCLVACERDARSL--EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (272)
Q Consensus       129 G~G~~~~~--la~~~-~~~~~v~~iD~s~~~~--~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~  203 (272)
                      |.|-.|..  ++..+ ..+.+|+-+|-+|..-  +..+...+...+.+++.+...+-...+....+..+...||+|++|.
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl   91 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL   91 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence            45555444  44444 2467999999888542  3332222222445567776655444444332222234699999984

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.76  E-value=8.9  Score=33.75  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      ..++.||--|.|.|. +..++..+ ..++++...|++++..+...+.+++.|   ++....+|..+.  +....++  .+
T Consensus        36 v~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e  111 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE  111 (300)
T ss_pred             ccCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence            467789988988885 44444333 236789999999999988888887765   577777776542  2222111  13


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      -+..|+++.++.
T Consensus       112 ~G~V~ILVNNAG  123 (300)
T KOG1201|consen  112 VGDVDILVNNAG  123 (300)
T ss_pred             cCCceEEEeccc
Confidence            478898887654

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=85.61  E-value=0.62  Score=40.51  Aligned_cols=39  Identities=13%  Similarity=0.137  Sum_probs=31.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE  158 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~  158 (272)
                      ..+++|||+|||.|.-++.....-  ...+...|.+.+.++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhee
Confidence            467899999999999988877642  257888898887763

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=85.61  E-value=22  Score=32.77  Aligned_cols=102  Identities=14%  Similarity=0.165  Sum_probs=55.8

Q ss_pred             EEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH------------HHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          122 RCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       122 ~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +|--+|+|. |..+-.+...+  +..|+++|+++..++..++            .+++.....|+++- .|..+..    
T Consensus         2 kI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~----   74 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV----   74 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----
Confidence            455566653 33222222222  3589999999998876543            22222222334433 1222211    


Q ss_pred             hCCCCCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                           ...|++|+.-+          ........+.+.+.++..-++|+-...-.|.
T Consensus        75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt  126 (414)
T COG1004          75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT  126 (414)
T ss_pred             -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence                 34588887533          1223455666778888878888876666664

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=85.47  E-value=7.7  Score=31.43  Aligned_cols=94  Identities=7%  Similarity=0.086  Sum_probs=50.3

Q ss_pred             HHHHHHHhhcC-CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC--CCEEEEEcChhH--H
Q 024097          109 QLLAMLVQILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAAD--S  183 (272)
Q Consensus       109 ~~l~~l~~~~~-~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~--~  183 (272)
                      ..+...+...+ ...|+.+|||.=.-...+....+ +.+++-+|. |+.++.-++.++..+..  .+.+++.+|..+  .
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~  144 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSW  144 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhh
Confidence            34444444434 34899999987776666665433 456666666 55666666666654321  234578888874  3


Q ss_pred             HHHHHhCC-CCCceEEEEEcCC
Q 024097          184 LKALILNG-EASSYDFAFVDAE  204 (272)
Q Consensus       184 ~~~~~~~~-~~~~fDlV~~d~~  204 (272)
                      ...+.+.+ +.+..-++++.+.
T Consensus       145 ~~~L~~~g~~~~~ptl~i~Egv  166 (183)
T PF04072_consen  145 IDALPKAGFDPDRPTLFIAEGV  166 (183)
T ss_dssp             HHHHHHCTT-TTSEEEEEEESS
T ss_pred             HHHHHHhCCCCCCCeEEEEcch
Confidence            44454433 3345556666554

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=85.47  E-value=2  Score=34.33  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +++++-+|+..=.. -.+|-..+ ..++.++|.++--++   +     ...+++. +...|........     .++||+
T Consensus         2 ~~~g~V~GS~~Pwv-Ev~aL~~G-A~~iltveyn~L~i~---~-----~~~dr~ssi~p~df~~~~~~y-----~~~fD~   66 (177)
T PF03269_consen    2 GKSGLVVGSMQPWV-EVMALQHG-AAKILTVEYNKLEIQ---E-----EFRDRLSSILPVDFAKNWQKY-----AGSFDF   66 (177)
T ss_pred             CceEEEEecCCchh-hHHHHHcC-CceEEEEeecccccC---c-----ccccccccccHHHHHHHHHHh-----hccchh
Confidence            56788888875433 23333333 568999998763211   0     1112222 2222232222222     478998


Q ss_pred             EEEcCC--------------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAE--------------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~--------------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +.+-+.              .......+.++..+|||||.+++.-
T Consensus        67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v  111 (177)
T PF03269_consen   67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV  111 (177)
T ss_pred             hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence            764321              1223455777889999999999853

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=85.27  E-value=7.4  Score=34.95  Aligned_cols=101  Identities=20%  Similarity=0.340  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||-.|+| .|..+..+++..+  . +|++++.+++..+.+++    .+...-+.....+....+..+.   ..
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~---~~  249 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT---DG  249 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc---CC
Confidence            34566788888764 4556666777654  4 49999988877665532    3432111111112222222221   13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+++-....   ...+..+.+.|+++|.++.-
T Consensus       250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence            568987743321   23567788889999998863

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=85.13  E-value=33  Score=32.45  Aligned_cols=105  Identities=9%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHH---HhCC--------CCCEEEEEcChhHHHHHHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYE---RAGV--------SHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~---~~~~--------~~~v~~~~~d~~~~~~~~~  188 (272)
                      ++|.-||+|..+.....+-+- +.+.+|+++|++++.++..++...   ..++        ..++++. .|..+.     
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~-----   75 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH-----   75 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence            357778776544443322221 124679999999998876543210   0000        0011111 111111     


Q ss_pred             hCCCCCceEEEEEcCC--c-------------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          189 LNGEASSYDFAFVDAE--K-------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~--~-------------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                          -...|++|+.-+  .             .......+.+.+.|++|-++++..+...|.
T Consensus        76 ----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt  133 (473)
T PLN02353         76 ----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT  133 (473)
T ss_pred             ----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence                134678876422  1             124556677778899988888887777774

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=85.10  E-value=3  Score=35.09  Aligned_cols=61  Identities=25%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ....-|.|||.|.|+.+..+..+-  -.++..+|+++.++.-.+-..+ +. ..+..++++|++.
T Consensus        49 ~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~E-Aa-~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   49 LTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSE-AA-PGKLRIHHGDVLR  109 (326)
T ss_pred             cccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhh-cC-CcceEEeccccce
Confidence            345689999999999999998752  3589999999988876665443 32 2368888888875

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.04  E-value=1.8  Score=37.53  Aligned_cols=39  Identities=21%  Similarity=0.168  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChhHH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSL  157 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~~~  157 (272)
                      +...++|+|||.|..+.+++..++    +...++.||......
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~   60 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH   60 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence            456899999999999999999884    246899999965433

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=84.99  E-value=6.7  Score=35.93  Aligned_cols=90  Identities=12%  Similarity=0.126  Sum_probs=60.2

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhH--HHHHHHHHHHhCCCCC-EEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARS--LEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~--~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +|+-|+=..|..+.+++..-+     +.+  +...  ....++|++.+++... +++.  +..+.+        .+.+|+
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~-----~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~  109 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKP-----YSI--GDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGV  109 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCC-----Cee--ehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCE
Confidence            789999999999999995322     222  2222  2345678888887543 4444  222222        356999


Q ss_pred             EEEcCCccc--hHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRM--YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~--~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++--++..  ....+..+...|.||+.+++-
T Consensus       110 vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001        110 VLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             EEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            998777443  455677788999999998753

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=84.99  E-value=10  Score=34.47  Aligned_cols=95  Identities=17%  Similarity=0.204  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhH-HHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++.+||-.|+| .|..+..+|+..+  .++++++.+++. .+.+    +..|...  .+...+. +.+...     .+.+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a----~~lGa~~--~i~~~~~-~~v~~~-----~~~~  243 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAI----DRLGADS--FLVTTDS-QKMKEA-----VGTM  243 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHH----HhCCCcE--EEcCcCH-HHHHHh-----hCCC
Confidence            56788888875 4555566777654  689999887643 3333    2345421  1111121 222222     1358


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+||-....   ...+..+.+.+++||.++.-..
T Consensus       244 D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        244 DFIIDTVSA---EHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             cEEEECCCc---HHHHHHHHHhhcCCCEEEEEcc
Confidence            988853322   2346777889999999986543

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=84.96  E-value=11  Score=32.78  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=56.4

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||-.|.+  .|..+..++...  +.+++.++.+++..+.+++    .+...  .+...+ .+....+......
T Consensus       163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~--~~~~~~-~~~~~~~~~~~~~  233 (342)
T cd08266         163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADY--VIDYRK-EDFVREVRELTGK  233 (342)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCe--EEecCC-hHHHHHHHHHhCC
Confidence            34567789888875  455555556554  4689999988876655532    23321  121111 1111111111113


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+++.....    ..+..+.+.++++|.++.-
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            468988865432    2456677888999988764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=84.95  E-value=9  Score=33.92  Aligned_cols=100  Identities=20%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....+..+.+..+   .....+|
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~---~~~~~~d  234 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAEL---GMTEGFD  234 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHh---cCCCCCC
Confidence            567777777653 556666777654 2268888877776655443    343211111111222222222   1135689


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||-....   ...++.+.+.|+++|.++.-.
T Consensus       235 ~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        235 VGLEMSGA---PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             EEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            88753321   235677788999999988753

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=84.89  E-value=9.2  Score=27.59  Aligned_cols=70  Identities=17%  Similarity=0.117  Sum_probs=43.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      ++|| +-||+|.+|-.++..                   .++.+++.|+.  +++...+..+....      ...+|+|+
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil   55 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL   55 (95)
T ss_pred             cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence            4677 669999887766654                   24455667764  78887777664332      25689999


Q ss_pred             EcCCccchHHHHHHHHccCCC
Q 024097          201 VDAEKRMYQEYFELLLQLIRV  221 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkp  221 (272)
                      +......   .++++.+...+
T Consensus        56 l~pqi~~---~~~~i~~~~~~   73 (95)
T TIGR00853        56 LAPQVAY---MLPDLKKETDK   73 (95)
T ss_pred             ECchHHH---HHHHHHHHhhh
Confidence            8665443   34444444444

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=84.89  E-value=12  Score=33.69  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCCEEEE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK  176 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~~~~~~v~~~  176 (272)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                     ...+.+++.+++.+..-+++.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            456899999973 333322222223 46899999863                     2334555666655543345556


Q ss_pred             EcChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          177 HGLAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       177 ~~d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ..+... ....+     -..||+|+...+
T Consensus       102 ~~~~~~~~~~~~-----~~~~DlVid~~D  125 (339)
T PRK07688        102 VQDVTAEELEEL-----VTGVDLIIDATD  125 (339)
T ss_pred             eccCCHHHHHHH-----HcCCCEEEEcCC
Confidence            555432 22233     257899886544

>TIGR00936 ahcY adenosylhomocysteinase

Probab=84.87  E-value=8.4  Score=35.64  Aligned_cols=87  Identities=11%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+-+|+|. |......++.+  +.+|+++|.++.....+..    .|.    ++.  +..+.   +      ...
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l------~~a  251 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A------KIG  251 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H------hcC
Confidence            4688999999974 44444455544  4799999999864333321    232    222  22221   1      346


Q ss_pred             EEEEEcCCccchHHHHH-HHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~  228 (272)
                      |+||.....   ...+. .....+|+|++++.-
T Consensus       252 DVVItaTG~---~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       252 DIFITATGN---KDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             CEEEECCCC---HHHHHHHHHhcCCCCcEEEEE
Confidence            988764432   33444 477889999988764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=84.86  E-value=4.2  Score=35.03  Aligned_cols=90  Identities=18%  Similarity=0.262  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          119 GAQRCIEVGVYTGY----SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~----~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++||-+|+|+--    -+.-+-+-+|.++.++-.|+.+-        .     ++--..+.+|.....+       +.
T Consensus        61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------v-----SDa~~~~~~Dc~t~~~-------~~  120 (299)
T PF06460_consen   61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------V-----SDADQSIVGDCRTYMP-------PD  120 (299)
T ss_dssp             TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B------SSSEEEES-GGGEEE-------SS
T ss_pred             cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------c-----cccCCceeccccccCC-------CC
Confidence            45799999998522    34556677888888899998642        1     2223567788766433       57


Q ss_pred             ceEEEEEcCC-------------ccchHHH-HHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAE-------------KRMYQEY-FELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~-------------~~~~~~~-l~~~~~lLkpgG~lvi~  228 (272)
                      +||+||.|.-             +...-.+ ..-+...|+-||.+++-
T Consensus       121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK  168 (299)
T PF06460_consen  121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK  168 (299)
T ss_dssp             -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence            9999999853             1222222 33345789999999984

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=84.65  E-value=9.9  Score=33.11  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      +|+=||+|.  .+..++..+. .+.+|+.++.+++.++..++    .++.   ...... ....+....      ...+|
T Consensus         2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~------~~~~d   68 (304)
T PRK06522          2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAE------LGPQD   68 (304)
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhH------cCCCC
Confidence            577788864  3444443332 24589999997766554432    2321   111100 001111111      25789


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +||+..........++.+.+.+.++..++.
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            999877766677788888888888765553

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=84.54  E-value=5.9  Score=34.88  Aligned_cols=78  Identities=18%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  196 (272)
                      +++||-.| |+|..+..+++.+- .+.+|+++..++.............+...+++++.+|..+.  +....     ..+
T Consensus         5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~   78 (325)
T PLN02989          5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC   78 (325)
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence            56888777 67888888887653 35688887777654333322222123234688999998763  22321     357


Q ss_pred             EEEEEcC
Q 024097          197 DFAFVDA  203 (272)
Q Consensus       197 DlV~~d~  203 (272)
                      |.||..+
T Consensus        79 d~vih~A   85 (325)
T PLN02989         79 ETVFHTA   85 (325)
T ss_pred             CEEEEeC
Confidence            9888654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=84.45  E-value=14  Score=33.13  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++.+|+-+|+| .|..+..+++..  +.++++++.+++..+.+.+   ..|...  .+...+. +.+...     ...+
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~-----~~~~  245 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA-----ADSL  245 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh-----cCCC
Confidence            456788877764 455666677765  3678888887765444332   245421  1111111 112222     2358


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+||-....   ...++.+.+.|++||.++.-..
T Consensus       246 D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        246 DYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             cEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence            988744321   2356777889999999887543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=84.42  E-value=0.84  Score=36.59  Aligned_cols=44  Identities=16%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (272)
                      ..++.+|+=+|.| .|..+..++..++  .+++.+|..++..+..+.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence            3467899999998 5777788888875  799999999876655443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.24  E-value=4.5  Score=35.08  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +|.=||+  |..+..++..+...   .+|+++|.+++..+.+++    .|...   . ..+..    ..     .+ .|+
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~----~~-----~~-aD~   61 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE----EL-----KK-CDV   61 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH----HH-----hc-CCE
Confidence            4566776  55555555544322   379999999887665532    34321   1 11221    12     13 799


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+..+.......++.+.+ +++|. ++++
T Consensus        62 Vilavp~~~~~~~~~~l~~-l~~~~-iv~d   89 (275)
T PRK08507         62 IFLAIPVDAIIEILPKLLD-IKENT-TIID   89 (275)
T ss_pred             EEEeCcHHHHHHHHHHHhc-cCCCC-EEEE
Confidence            9988877777778888878 77776 4444

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.16  E-value=13  Score=32.65  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||-+|+| .|..+..+++..+  .+ ++.++.+++..+.+++    .+..   .++..+-.+.....  ...
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~--~~~  223 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQK--EDN  223 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHH--Hhc
Confidence            344567899988865 3556666677653  45 8899999887766543    3432   22222111111110  011


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+|+++.....   ...+..+.+.|+++|.++.-
T Consensus       224 ~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         224 PYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             CCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEE
Confidence            3579999854321   24677778889999998763

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.92  E-value=14  Score=30.57  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             HHHHHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          111 LAMLVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      +........+++||-+|+. +|..+   ++.+.+..+|+.+|+.|.+-.         -+.+.++|..+     +..+  
T Consensus        36 i~~~~~~~E~~~vli~G~YltG~~~---a~~Ls~~~~vtv~Di~p~~r~---------~lp~~v~Fr~~-----~~~~--   96 (254)
T COG4017          36 IRDFLEGEEFKEVLIFGVYLTGNYT---AQMLSKADKVTVVDIHPFMRG---------FLPNNVKFRNL-----LKFI--   96 (254)
T ss_pred             hhhhhcccCcceEEEEEeeehhHHH---HHHhcccceEEEecCCHHHHh---------cCCCCccHhhh-----cCCC--
Confidence            3333344567899999987 45444   444444679999999986432         13344665533     2222  


Q ss_pred             CCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEeCCCCCCcccCC
Q 024097          190 NGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~  239 (272)
                         .+.+|+|+--..... .+.+    .+.+.| +++++.|..  |.+.|+
T Consensus        97 ---~G~~DlivDlTGlGG~~Pe~----L~~fnp-~vfiVEdP~--gn~~D~  137 (254)
T COG4017          97 ---RGEVDLIVDLTGLGGIEPEF----LAKFNP-KVFIVEDPK--GNVFDV  137 (254)
T ss_pred             ---CCceeEEEeccccCCCCHHH----HhccCC-ceEEEECCC--CCCCcc
Confidence               578999884332222 2333    334566 556776654  334444

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=83.92  E-value=14  Score=31.67  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=59.2

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++.+||=.|+  +.|..+..+++..  +.++++++.+++..+.+++    .+..   .++...-.+....+.....
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~  202 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG  202 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence            34456788998884  4666777777775  4789999988877665533    3432   1222211122112211112


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ...+|+++-....    .....+.+.|+++|.++.
T Consensus       203 ~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         203 GRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             CCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence            3469998853322    246677888999998885

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=83.87  E-value=17  Score=31.41  Aligned_cols=96  Identities=22%  Similarity=0.327  Sum_probs=59.5

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++.+||-.|+  +.|..+..+++..  +.+|+++..+++..+.+++    .|.. .+-....+..+.+..+     ..
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~i~~~-----~~  207 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKE----LGAD-EVVIDDGAIAEQLRAA-----PG  207 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc-EEEecCccHHHHHHHh-----CC
Confidence            456788988885  4677777778775  4789999988876655532    4542 1211112222222222     25


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+++-... .   ..++.+.+.|+++|.++.-
T Consensus       208 ~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         208 GFDKVLELVG-T---ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CceEEEECCC-h---HHHHHHHHHhccCCEEEEE
Confidence            6998884332 1   3577788999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=83.79  E-value=5.5  Score=32.15  Aligned_cols=98  Identities=17%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|.=||+|  ..+..+++.+ +-+.+|+++|.+.....    .....+    +  ...+..+.+.         ..
T Consensus        34 l~g~tvgIiG~G--~IG~~vA~~l~~fG~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell~---------~a   92 (178)
T PF02826_consen   34 LRGKTVGIIGYG--RIGRAVARRLKAFGMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELLA---------QA   92 (178)
T ss_dssp             STTSEEEEESTS--HHHHHHHHHHHHTT-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHHH---------H-
T ss_pred             cCCCEEEEEEEc--CCcCeEeeeeecCCceeEEecccCChhh----hccccc----c--eeeehhhhcc---------hh
Confidence            467899999885  4454444433 12479999999987544    121112    3  2224444433         46


Q ss_pred             EEEEEcCCc-cchHHH-HHHHHccCCCCcEEEEeCCCCCCcccCC
Q 024097          197 DFAFVDAEK-RMYQEY-FELLLQLIRVGGIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       197 DlV~~d~~~-~~~~~~-l~~~~~lLkpgG~lvi~d~~~~g~~~~~  239 (272)
                      |+|++..+. +....+ =+..+..+|+|.+||=  +- .|.+.++
T Consensus        93 Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN--~a-RG~~vde  134 (178)
T PF02826_consen   93 DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN--VA-RGELVDE  134 (178)
T ss_dssp             SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE--SS-SGGGB-H
T ss_pred             hhhhhhhccccccceeeeeeeeeccccceEEEe--cc-chhhhhh
Confidence            999887652 222122 2445678898876552  33 4555543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK09028 cystathionine beta-lyase; Provisional

Probab=83.78  E-value=27  Score=32.19  Aligned_cols=121  Identities=12%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .++....+..++=..+|+......+...+.++.+|+..+..- .....+...+...|.  .+.++..+..+.+....   
T Consensus        69 ~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l---  143 (394)
T PRK09028         69 AIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI---  143 (394)
T ss_pred             HHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc---
Confidence            333333445677677777666555554566677888887653 333444444444443  24444322223333322   


Q ss_pred             CCCceEEEEEcCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCcccCC
Q 024097          192 EASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       192 ~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkp-gG~lvi~d~~~~g~~~~~  239 (272)
                       ...-.+|++..+  .......++.+.++.+. |..+++|++...+....|
T Consensus       144 -~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P  193 (394)
T PRK09028        144 -RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRP  193 (394)
T ss_pred             -CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence             234578888754  22223446666666554 566777888766644444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=83.63  E-value=8.9  Score=35.69  Aligned_cols=86  Identities=12%  Similarity=0.103  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+++|+=+|+|. |......++.+  +.+|+.+|+++.....+..    .|.    ++.  +..+.   +      ..+|
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea---l------~~aD  269 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TMEEA---A------ELGD  269 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH---H------hCCC
Confidence            678999999873 33333344444  4699999999865433321    232    222  22222   1      3579


Q ss_pred             EEEEcCCccchHHHHH-HHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~  228 (272)
                      +||.....   ...+. .....+|+|++++.-
T Consensus       270 VVI~aTG~---~~vI~~~~~~~mK~GailiNv  298 (425)
T PRK05476        270 IFVTATGN---KDVITAEHMEAMKDGAILANI  298 (425)
T ss_pred             EEEECCCC---HHHHHHHHHhcCCCCCEEEEc
Confidence            88865432   23454 567889999977653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.60  E-value=12  Score=34.15  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=45.3

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+|+=+||| .|......+...+ -++++.+|.+                   ....+.+.+.+++.+..-+++....
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            56689999997 3443333333333 4689999987                   3445666666765543323444443


Q ss_pred             ChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ...+ ....+     -..+|+|+...+
T Consensus       213 ~~~~~~~~~~-----~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEAL-----LQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHHH-----HhCCCEEEECCC
Confidence            3322 22222     146898886544

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=83.49  E-value=26  Score=31.60  Aligned_cols=106  Identities=16%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-.|+| .|..+..+++..+ ..+++++|.+++..+.+++    .|. ..+.....+..+.+..+   . ..
T Consensus       173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~i~~~---~-~~  242 (375)
T cd08282         173 GVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGDPVEQILGL---E-PG  242 (375)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCcccHHHHHHHh---h-CC
Confidence            34567788777775 3555566666653 2378899998877666554    342 11111111222222222   1 24


Q ss_pred             ceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+|+++-.....        +....+..+.+.|+++|.++...+.
T Consensus       243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~  287 (375)
T cd08282         243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVY  287 (375)
T ss_pred             CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEecc
Confidence            689887543322        1123477888999999999866554

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.39  E-value=18  Score=30.82  Aligned_cols=84  Identities=12%  Similarity=0.006  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .++++|-.|+++ +..+..+++.+. .+.+|+.++.+....+..++..+... ..++.++..|..+.  ...+.+.  ..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999873 667777777653 46788888654322222222222221 23577888887652  1222111  01


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+++|+++...
T Consensus        85 ~g~ld~lv~na   95 (257)
T PRK08594         85 VGVIHGVAHCI   95 (257)
T ss_pred             CCCccEEEECc
Confidence            26789887643

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=83.36  E-value=2.9  Score=30.10  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCC--------cCCCHhhHHHHHHHHHhhhCCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQ--------MVNDAKTISIRNFNKNLMEDER  261 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~---~~g~~~~~--------~~~~~~~~~~~~~~~~l~~~~~  261 (272)
                      ...||++++|....-.+..+..+...++-||++++----   |+.. .++        ...+....-++.|.+.+.++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~-~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~   87 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQL-PDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPG   87 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS--BGGGHHCC--SS-B--HHHHHHHHHHHCCSTT
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhc-chHHHhccccCCCCcccHHHHHHHHHHHHHCcC
Confidence            467999999987777788899999999999999873222   2211 111        1112234467778888888887


Q ss_pred             eE
Q 024097          262 VS  263 (272)
Q Consensus       262 ~~  263 (272)
                      +.
T Consensus        88 i~   89 (92)
T PF08351_consen   88 II   89 (92)
T ss_dssp             S-
T ss_pred             Cc
Confidence            64

; PDB: 2ZPA_B.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=83.27  E-value=31  Score=31.48  Aligned_cols=128  Identities=15%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChh-HHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      |....+=..+........++=..+|++.....+...+.++.+|+..+..-. ....+....+..|.  +++++..+..+.
T Consensus        50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~  127 (377)
T TIGR01324        50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGED  127 (377)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH
Confidence            444444444444445567776777777666665555666778887765432 22333333444443  244332211122


Q ss_pred             HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCcccC
Q 024097          184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVAD  238 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkp-gG~lvi~d~~~~g~~~~  238 (272)
                      +....    .....+|++..+  .......++.+.++.+. |..+++|++...|....
T Consensus       128 l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~  181 (377)
T TIGR01324       128 IATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK  181 (377)
T ss_pred             HHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC
Confidence            33221    245678887654  22233445666655554 56777888876665433

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.17  E-value=1.8  Score=33.65  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             EEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC----C-CEEEEEcC-hhHHHHHHHhCCCCCce
Q 024097          124 IEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGL-AADSLKALILNGEASSY  196 (272)
Q Consensus       124 LEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~-~v~~~~~d-~~~~~~~~~~~~~~~~f  196 (272)
                      +=+|+  |..+..+|..+ ..+.+|+.+...+ .++.    ++..++.    . ...+.... .......      ...|
T Consensus         2 ~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~   68 (151)
T PF02558_consen    2 LIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD------AGPY   68 (151)
T ss_dssp             EEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH------HSTE
T ss_pred             EEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc------cCCC
Confidence            34555  55665555554 2257899999877 4443    2223321    0 11111111 1111011      3789


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+||+..-..+..+.++.+.+.+.++..+++
T Consensus        69 D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   69 DLVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             SEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             cEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            9999987766778889999999999976664

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=82.96  E-value=3  Score=35.82  Aligned_cols=106  Identities=18%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-----------CcEEEEEeCChhHHHHHH-------------HHHH---------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEVAK-------------KYYE---------  165 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~-----------~~~v~~iD~s~~~~~~a~-------------~~~~---------  165 (272)
                      +.-.|+|+|-|+|...+...+..+.           .-++++++.+|.......             +...         
T Consensus        58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~  137 (252)
T COG4121          58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC  137 (252)
T ss_pred             cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence            3447999999999988777665431           135788888774322111             1110         


Q ss_pred             ----HhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEE
Q 024097          166 ----RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       166 ----~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                          ..| .-...+..||+.+.++.....  .+.+|+.|.|+-.      -+..+++..+.+..++||.+.-
T Consensus       138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~--~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t  206 (252)
T COG4121         138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRR--RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT  206 (252)
T ss_pred             HHhhhcc-hheeeeeeeehhhcCCccccc--ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence                012 124677888888776654111  0179999998641      1356788999999999999875

>PRK08818 prephenate dehydrogenase; Provisional

Probab=82.91  E-value=5.7  Score=36.25  Aligned_cols=32  Identities=16%  Similarity=0.002  Sum_probs=21.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERD  153 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s  153 (272)
                      .+|.=||. +|..+-++++.+.  .+.+|+++|.+
T Consensus         5 ~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~   38 (370)
T PRK08818          5 PVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPA   38 (370)
T ss_pred             CEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            47888884 3555555555543  25689999985

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=82.87  E-value=9.6  Score=29.07  Aligned_cols=89  Identities=13%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ..+|+=+||| .|......+...+ -++++-+|.+.                   ...+.+++.+.+....-+++.+..+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            3589999996 4443333332223 46888888542                   2346677777776655567777776


Q ss_pred             hh-HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097          180 AA-DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL  214 (272)
Q Consensus       180 ~~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~  214 (272)
                      .. +....+.     ..+|+||...+.......+.+
T Consensus        81 ~~~~~~~~~~-----~~~d~vi~~~d~~~~~~~l~~  111 (135)
T PF00899_consen   81 IDEENIEELL-----KDYDIVIDCVDSLAARLLLNE  111 (135)
T ss_dssp             CSHHHHHHHH-----HTSSEEEEESSSHHHHHHHHH
T ss_pred             cccccccccc-----cCCCEEEEecCCHHHHHHHHH
Confidence            62 3334432     478999876554333333333

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=82.87  E-value=17  Score=30.35  Aligned_cols=95  Identities=19%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHH-HhCCCC-CEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYE-RAGVSH-KVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~-~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +|.=|| |+|..+..++..+.. +.+|+.++.+++..+...+... ..+... ...+...+..+.   .      ...|+
T Consensus         2 kI~IIG-G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea---~------~~aDv   71 (219)
T TIGR01915         2 KIAVLG-GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA---A------KRADV   71 (219)
T ss_pred             EEEEEc-CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH---H------hcCCE
Confidence            466676 345555555555422 3588889998877655443221 111100 112222222222   1      45799


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+..........++.+...++.  .++++
T Consensus        72 Vilavp~~~~~~~l~~l~~~l~~--~vvI~   99 (219)
T TIGR01915        72 VILAVPWDHVLKTLESLRDELSG--KLVIS   99 (219)
T ss_pred             EEEECCHHHHHHHHHHHHHhccC--CEEEE
Confidence            99987777677777777665643  55554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=82.76  E-value=21  Score=30.71  Aligned_cols=100  Identities=18%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+|+-.||  +.|..+..+++..  +.+++.++.+++..+.+++    .+...-+.....+..+.+...   ...
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~---~~~  206 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKAL---TGG  206 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHH---cCC
Confidence            3446789998997  3555556666654  4689999998877665533    343211111111222222222   113


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+++.....    ..+..+.+.++++|.++.-
T Consensus       207 ~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         207 RGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             CCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence            468988753322    2456677888999988753

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=82.66  E-value=11  Score=31.83  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHH-HHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK-YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++=+|||  ..+..+|+.+.. +..|+.+|.+++.++.... .+       -...+++|+.+.  ..+...+-..+|.
T Consensus         1 m~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~--~~L~~agi~~aD~   69 (225)
T COG0569           1 MKIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDE--DVLEEAGIDDADA   69 (225)
T ss_pred             CEEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCH--HHHHhcCCCcCCE
Confidence            356777775  566666666543 3589999999987655222 11       367888888762  1122223468999


Q ss_pred             EEEcCCcc
Q 024097          199 AFVDAEKR  206 (272)
Q Consensus       199 V~~d~~~~  206 (272)
                      ++......
T Consensus        70 vva~t~~d   77 (225)
T COG0569          70 VVAATGND   77 (225)
T ss_pred             EEEeeCCC
Confidence            98765543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.63  E-value=20  Score=31.25  Aligned_cols=93  Identities=16%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHh-------CC-C--------CCEEEEEcChhHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-------GV-S--------HKVKIKHGLAADS  183 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-------~~-~--------~~v~~~~~d~~~~  183 (272)
                      ++|.=||+|.=  +..++..+. .+.+|+.+|.+++.++.+.+.+.+.       +. .        .++++. .+.   
T Consensus         5 ~kI~vIGaG~m--G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   78 (292)
T PRK07530          5 KKVGVIGAGQM--GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL---   78 (292)
T ss_pred             CEEEEECCcHH--HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence            46777888643  333333321 2468999999999887765543321       21 0        123322 122   


Q ss_pred             HHHHHhCCCCCceEEEEEcCCc--cchHHHHHHHHccCCCCcEEE
Q 024097          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~--~~~~~~l~~~~~lLkpgG~lv  226 (272)
                       ..+      ...|+|+...+.  .....+++.+.+.++++.+|+
T Consensus        79 -~~~------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         79 -EDL------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             -HHh------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence             122      467988876542  224466788888888887665

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=82.51  E-value=21  Score=30.35  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+|+=+||| .|......+.+.+ -++++.+|.+.                   ...+.+++++...+..-+++.+..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            45689999997 4554444333333 46888888653                   223455666666554434555544


Q ss_pred             Chh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAA-DSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~-~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ... +....+.    ...||+|+...+
T Consensus        89 ~i~~~~~~~l~----~~~~D~VvdaiD  111 (231)
T cd00755          89 FLTPDNSEDLL----GGDPDFVVDAID  111 (231)
T ss_pred             ecCHhHHHHHh----cCCCCEEEEcCC
Confidence            333 1222221    246999886543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=82.36  E-value=20  Score=31.58  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=60.5

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||=.|++  .|..+..+++..+  .+++.+..+++..+.+++    .+...-+.....+..+.+....   +.
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~---~~  232 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT---GG  232 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh---cC
Confidence            44567889888875  5667777888764  689999998876655532    3432111111112222222221   13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+++.+....   ..+..+.+.++++|.++.-
T Consensus       233 ~~vd~vl~~~~~~---~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         233 GGAHAVVVTAVSA---AAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence            5699888544322   2466778889999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=82.28  E-value=4  Score=28.26  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=21.4

Q ss_pred             cCCCEEEEEcCccCHH-HHHHHHHCCCCcEEEEEeCC
Q 024097          118 LGAQRCIEVGVYTGYS-SLAIALVLPESGCLVACERD  153 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~-~~~la~~~~~~~~v~~iD~s  153 (272)
                      ..+++||-||+-+|+- +..++..+..++..+++-..
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE   73 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE   73 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence            4578999999999973 33466665556777777554

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=82.26  E-value=17  Score=32.09  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=57.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~  193 (272)
                      ...++.+||=.|+| .|..+..+++..  +.++++++.+++..+.+++    .|...-+.... .+....+..+   . .
T Consensus       162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~---~-~  231 (345)
T cd08260         162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDL---T-G  231 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHH---h-C
Confidence            34466788888853 344555566654  4689999998887766643    35422112211 1222222222   1 1


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +.+|++|.....   ...+..+.+.|+++|.++.
T Consensus       232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence            279988853221   2356678889999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=82.24  E-value=15  Score=32.18  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++.+||=.|.  +.|..+..+++..  +.++++++.++...+.+++.   .+...-+.....+..+.+...   . ..
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~---~-~~  213 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEA---A-PD  213 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHh---c-cC
Confidence            345678888874  3566667777765  46899999888766665443   233211121111222212221   1 24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+|+++-....    ..++.+.+.|+++|.++.
T Consensus       214 ~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~  242 (329)
T cd05288         214 GIDVYFDNVGG----EILDAALTLLNKGGRIAL  242 (329)
T ss_pred             CceEEEEcchH----HHHHHHHHhcCCCceEEE
Confidence            68988743221    357778888999998875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=82.11  E-value=1.2  Score=41.41  Aligned_cols=111  Identities=15%  Similarity=0.115  Sum_probs=60.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~  195 (272)
                      ..+..+.|+|.|.|.-.-.+....+. .-.++.||.+..|......+.+........ ++.. -..+   ..........
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r---~~~pi~~~~~  274 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHR---QRLPIDIKNG  274 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhc---ccCCCCcccc
Confidence            45678888887766433332222221 246999999999998888777641111111 1111 1111   1111112356


Q ss_pred             eEEEEEcCC------ccchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          196 YDFAFVDAE------KRMYQE-YFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~-~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      ||+|++.+.      ...... .-....+..++|+.+|+   +++|.
T Consensus       275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi---Ie~g~  318 (491)
T KOG2539|consen  275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI---IEKGT  318 (491)
T ss_pred             eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE---EecCC
Confidence            999998653      111222 23344578899999987   45554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=82.04  E-value=16  Score=33.29  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=22.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCCh
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDA  154 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~  154 (272)
                      ++|.-|| |.|..+..++..+.. +..|+++|.++
T Consensus        99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5788887 456666666666532 45799999864

>PRK06914 short chain dehydrogenase; Provisional

Probab=82.01  E-value=31  Score=29.41  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=51.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--H---HHHhCCCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--K---ALILNGEA  193 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~~~~~  193 (272)
                      .+++|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...+++++.+|..+..  .   .....  -
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~   79 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I   79 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence            457787774 555677766554 3457899999988776665555544444456888888886532  1   11111  2


Q ss_pred             CceEEEEEcC
Q 024097          194 SSYDFAFVDA  203 (272)
Q Consensus       194 ~~fDlV~~d~  203 (272)
                      ++.|.|+..+
T Consensus        80 ~~id~vv~~a   89 (280)
T PRK06914         80 GRIDLLVNNA   89 (280)
T ss_pred             CCeeEEEECC
Confidence            5689888654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=82.00  E-value=43  Score=30.97  Aligned_cols=124  Identities=17%  Similarity=0.183  Sum_probs=73.6

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEe-CChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +-..+........++-.-+|....+..+...++.+.++++.+ .--.-..+.++...+.|..  ..++..+-.+.+....
T Consensus        82 le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~~~~~~i  159 (409)
T KOG0053|consen   82 LESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLKKILKAI  159 (409)
T ss_pred             HHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHHHHHHhh
Confidence            333444445666788888888878888887788778887776 3345566677766666653  4555443333333221


Q ss_pred             hCCCCCceEEEEEcCCccc--hHHHHHHHHccC-CCCcEEEEeCCCCCCcccCC
Q 024097          189 LNGEASSYDFAFVDAEKRM--YQEYFELLLQLI-RVGGIIVIDNVLWHGKVADQ  239 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lL-kpgG~lvi~d~~~~g~~~~~  239 (272)
                          .+..++||+..+...  ....++.+.++- ++|-.+|+||..-++-..+|
T Consensus       160 ----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~p  209 (409)
T KOG0053|consen  160 ----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDP  209 (409)
T ss_pred             ----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccCh
Confidence                235899998765211  111233333333 56677778888766644444

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=81.97  E-value=16  Score=32.24  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             EEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          122 RCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       122 ~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      +||=+||| .|...+..+...+ -++++.+|.+.                   ...+.|.+.+++.+..-+++.+..+..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47788886 3333333222233 46888888542                   224556666666554445777766665


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL  214 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~  214 (272)
                      +....+     -.+||+|+...+....+.++..
T Consensus        80 ~~~~~f-----~~~fdvVi~alDn~~aR~~in~  107 (291)
T cd01488          80 DKDEEF-----YRQFNIIICGLDSIEARRWING  107 (291)
T ss_pred             chhHHH-----hcCCCEEEECCCCHHHHHHHHH
Confidence            543333     2689999875443333334443

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.82  E-value=18  Score=31.86  Aligned_cols=93  Identities=23%  Similarity=0.242  Sum_probs=51.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHh-CC--C--------CCEEEEEcChhHHHHHHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERA-GV--S--------HKVKIKHGLAADSLKALI  188 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~~  188 (272)
                      ++|.=||+|.  .+..++..+ ..+.+|+.+|.+++.++.+++.+... +.  .        .++++. .|..+.     
T Consensus         5 ~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-----   76 (311)
T PRK06130          5 QNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA-----   76 (311)
T ss_pred             cEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH-----
Confidence            4677788864  333333332 12458999999999888777643211 11  0        112211 122111     


Q ss_pred             hCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEE
Q 024097          189 LNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGII  225 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~l  225 (272)
                          -...|+||......  ....+++.+.++++++.++
T Consensus        77 ----~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii  111 (311)
T PRK06130         77 ----VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIF  111 (311)
T ss_pred             ----hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEE
Confidence                14579988765533  2456677777766665544

>PLN02702 L-idonate 5-dehydrogenase

Probab=81.70  E-value=19  Score=32.27  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE--EcChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~  192 (272)
                      ...++.+||-+|+| .|..+..+++..+ ...+++++.+++..+.+++    .+....+.+.  ..+..+.+..+... .
T Consensus       178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~-~  251 (364)
T PLN02702        178 NIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA-M  251 (364)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh-c
Confidence            34467788888764 3556666777654 2358999988776665544    3543222221  12222222222111 1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...+|+|+-....   ...+..+.+.|+++|.++.-.
T Consensus       252 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        252 GGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence            2468988754332   235778888999999988643

>PRK06153 hypothetical protein; Provisional

Probab=81.51  E-value=30  Score=31.84  Aligned_cols=82  Identities=20%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh----------------------hHHHHHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA----------------------RSLEVAKKYYERAGVSHK  172 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~----------------------~~~~~a~~~~~~~~~~~~  172 (272)
                      ......+|+-|||| +|...+..+.+.+ -++++.+|.+.                      ..++.+++.+.+.+.  .
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~  248 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR--G  248 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--e
Confidence            34466799999998 5665555555555 56888888651                      233445566655443  3


Q ss_pred             EEEEEcChhH-HHHHHHhCCCCCceEEEEEcCCcc
Q 024097          173 VKIKHGLAAD-SLKALILNGEASSYDFAFVDAEKR  206 (272)
Q Consensus       173 v~~~~~d~~~-~~~~~~~~~~~~~fDlV~~d~~~~  206 (272)
                      +..+.....+ ....+      ..+|+||...+..
T Consensus       249 I~~~~~~I~~~n~~~L------~~~DiV~dcvDn~  277 (393)
T PRK06153        249 IVPHPEYIDEDNVDEL------DGFTFVFVCVDKG  277 (393)
T ss_pred             EEEEeecCCHHHHHHh------cCCCEEEEcCCCH
Confidence            5544433321 22222      5789999765533

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=81.51  E-value=21  Score=31.10  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~  193 (272)
                      ..++.+||=.|+  +.|..+..+++..+  .+++.+..+++..+.+++    .|...-+.....+ ..+.+...   ...
T Consensus       138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~  208 (334)
T PTZ00354        138 VKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKL---TGE  208 (334)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHH---hCC
Confidence            345678888874  46777777787754  567778888877666643    3442111111111 22222222   113


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+++-...    ...+..+.+.|+++|.++.-
T Consensus       209 ~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        209 KGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             CCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence            46899884332    24667788899999998863

>PRK09242 tropinone reductase; Provisional

Probab=81.49  E-value=14  Score=31.09  Aligned_cols=85  Identities=18%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .++++|-.|++. ..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.  +..+...  ...
T Consensus         8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467888888744 45666665542 36789999998877766665554432234688888887642  1111110  012


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +.+|.++....
T Consensus        87 g~id~li~~ag   97 (257)
T PRK09242         87 DGLHILVNNAG   97 (257)
T ss_pred             CCCCEEEECCC
Confidence            57899886653

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.44  E-value=32  Score=29.19  Aligned_cols=80  Identities=15%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCC-CCcEEEEEeCCh--hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDA--RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--  190 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~-~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--  190 (272)
                      .++++|-.|+| ++..+..+++.+. .+.+|+.++.+.  +..+...+.+   +  .++.++..|..+.  ...+.+.  
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~   80 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVR   80 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence            46789999985 5667777777653 357898888764  3333222222   2  2466777787542  2222111  


Q ss_pred             CCCCceEEEEEcC
Q 024097          191 GEASSYDFAFVDA  203 (272)
Q Consensus       191 ~~~~~fDlV~~d~  203 (272)
                      ...+.+|+++.++
T Consensus        81 ~~~g~iD~li~nA   93 (256)
T PRK07889         81 EHVDGLDGVVHSI   93 (256)
T ss_pred             HHcCCCcEEEEcc
Confidence            0136789988654

>PRK07109 short chain dehydrogenase; Provisional

Probab=81.33  E-value=21  Score=31.80  Aligned_cols=83  Identities=20%  Similarity=0.119  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      ..++||-.|+ +|..+..+++.+ ..+.+|+.++.+++.++...+.++..+  .++.++.+|..+.  +....+.  ..-
T Consensus         7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            4567887775 555677776655 346799999999887776666665544  3578888887552  1111110  012


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +++|++|....
T Consensus        84 g~iD~lInnAg   94 (334)
T PRK07109         84 GPIDTWVNNAM   94 (334)
T ss_pred             CCCCEEEECCC
Confidence            57898886543

>PRK05854 short chain dehydrogenase; Provisional

Probab=81.27  E-value=15  Score=32.32  Aligned_cols=84  Identities=17%  Similarity=0.084  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~--~~~  193 (272)
                      .++++|-.|+. |..+..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++..|..+..  ..+.+.  ...
T Consensus        13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            46788877765 456777766553 467999999998877666655544322335888888876521  111111  013


Q ss_pred             CceEEEEEcC
Q 024097          194 SSYDFAFVDA  203 (272)
Q Consensus       194 ~~fDlV~~d~  203 (272)
                      +..|+++.++
T Consensus        92 ~~iD~li~nA  101 (313)
T PRK05854         92 RPIHLLINNA  101 (313)
T ss_pred             CCccEEEECC
Confidence            5789988764

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=81.23  E-value=18  Score=30.80  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=46.3

Q ss_pred             EEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          122 RCIEVGVYTGYSSLAIALVL--PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      +||=+|+|  ..+..+++.+  ..-++++.+|.+.                   ...+.+++++++.+..-+++.+..+.
T Consensus         1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            46778875  3443433332  1146888888543                   22345566666655444566666655


Q ss_pred             h---HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097          181 A---DSLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       181 ~---~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~  215 (272)
                      .   +....+     -..||+|+...+....+.++...
T Consensus        79 ~~~~~~~~~f-----~~~~DvVi~a~Dn~~aR~~ln~~  111 (234)
T cd01484          79 GPEQDFNDTF-----FEQFHIIVNALDNIIARRYVNGM  111 (234)
T ss_pred             ChhhhchHHH-----HhCCCEEEECCCCHHHHHHHHHH
Confidence            2   212222     26799999765533334444444

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.20  E-value=6.9  Score=30.05  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=44.5

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVL--PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .....+++||=||+|  ..+..++..+  ..-.+++.+..+.+..+...+.+   + ...+++...+-..  ..+     
T Consensus         7 ~~~l~~~~vlviGaG--g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~-~~~~~~~~~~~~~--~~~-----   73 (135)
T PF01488_consen    7 FGDLKGKRVLVIGAG--GAARAVAAALAALGAKEITIVNRTPERAEALAEEF---G-GVNIEAIPLEDLE--EAL-----   73 (135)
T ss_dssp             HSTGTTSEEEEESSS--HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---T-GCSEEEEEGGGHC--HHH-----
T ss_pred             cCCcCCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---C-ccccceeeHHHHH--HHH-----
Confidence            334578899999985  3444333332  11346999999877655444444   2 1236666433222  222     


Q ss_pred             CCceEEEEEcCCccc
Q 024097          193 ASSYDFAFVDAEKRM  207 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~  207 (272)
                       ..+|+|+...+...
T Consensus        74 -~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 -QEADIVINATPSGM   87 (135)
T ss_dssp             -HTESEEEE-SSTTS
T ss_pred             -hhCCeEEEecCCCC
Confidence             57999997655443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.16  E-value=19  Score=32.70  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+||=+|||. |......+...+ -++++.+|.+.                   ...+.+++.+++.+..-+++.+..
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            456999999974 433333332333 46888888764                   345667777776655434555444


Q ss_pred             ChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .... ....+     -..||+|+...+
T Consensus       106 ~i~~~~~~~~-----~~~~DvVvd~~d  127 (355)
T PRK05597        106 RLTWSNALDE-----LRDADVILDGSD  127 (355)
T ss_pred             ecCHHHHHHH-----HhCCCEEEECCC
Confidence            3322 11222     257998886654

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=81.10  E-value=21  Score=31.30  Aligned_cols=96  Identities=24%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .+..   .++...-.+.....     .+
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~-----~~  224 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAA-----AG  224 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhc-----cC
Confidence            34566788888886 666666677765  4689999999887766533    2322   11111111111111     24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+++.....   ......+.+.|+++|.++.-
T Consensus       225 ~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         225 GADVILVTVVS---GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             CCCEEEECCCc---HHHHHHHHHhcccCCEEEEE
Confidence            68988853221   23567778899999988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=81.07  E-value=25  Score=27.77  Aligned_cols=62  Identities=27%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             CccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEEEEEcCC
Q 024097          128 VYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       128 ~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .|+|..+..+++.+ ..+.+|+++-.+++..+.          ..+++++.+|..+.  +...     -..+|.||....
T Consensus         5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-----l~~~d~vi~~~~   69 (183)
T PF13460_consen    5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-----LKGADAVIHAAG   69 (183)
T ss_dssp             TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-----HTTSSEEEECCH
T ss_pred             CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-----hhhcchhhhhhh
Confidence            36888888888775 345799999999875433          34699999999774  2222     146898887654

...

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=80.89  E-value=6.8  Score=36.74  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEE------EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLV------ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~------~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      ....+++|+-||||+  .+...|..+.. +.+|+      ++|.+....+.|.+    .|+.      ..+..+.+    
T Consensus        32 ~~LkgKtIaIIGyGS--qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~----   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGA--QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI----   95 (487)
T ss_pred             HHhCCCEEEEEccCH--HHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----
Confidence            345778999999965  44433333321 23444      44554555444433    3441      23343333    


Q ss_pred             hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                           ...|+|++-.+......+.+.+.+.||||..|.+.
T Consensus        96 -----~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs  130 (487)
T PRK05225         96 -----PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS  130 (487)
T ss_pred             -----HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence                 45799988766445666779999999999999984

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.85  E-value=4.1  Score=37.36  Aligned_cols=62  Identities=18%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE-cCC----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFV-DAE----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       168 ~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~-d~~----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +. +++++++++..+.+...    .++++|.+++ |+.    .....+.++.+.+.++|||.+++-+.....
T Consensus       273 ~~-drv~i~t~si~~~L~~~----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  273 RL-DRVRIHTDSIEEVLRRL----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             CC-CeEEEEeccHHHHHHhC----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            44 68999999999987754    2589998764 432    445677788899999999999987666443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=80.81  E-value=17  Score=31.99  Aligned_cols=100  Identities=21%  Similarity=0.282  Sum_probs=55.5

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+||=.|+| .|..+..+++..+ ..+|++++.+++..+.+++    .+... +--...+..+.+..+.   ....
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~i~~~~---~~~~  235 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGADH-VLNASDDVVEEVRELT---GGRG  235 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCcE-EEcCCccHHHHHHHHh---CCCC
Confidence            3456788888854 2333344555543 2689999988876655532    45421 1111111112222221   1246


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+|+-....   ...++.+.+.|+++|.++.-
T Consensus       236 ~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         236 ADAVIDFVGS---DETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            9988853331   23577778889999998853

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK08328 hypothetical protein; Provisional

Probab=80.74  E-value=24  Score=29.82  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh--------------------hHHHHHHHHHHHhCCCCCEEEEE
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA--------------------RSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~--------------------~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                    ...+.++++++..+..-+++...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            456899999983 444444333334 46888888542                    12334445555544433455444


Q ss_pred             cChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          178 GLAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       178 ~d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      +...+ .+..+     -..+|+|+...+
T Consensus       105 ~~~~~~~~~~~-----l~~~D~Vid~~d  127 (231)
T PRK08328        105 GRLSEENIDEV-----LKGVDVIVDCLD  127 (231)
T ss_pred             ccCCHHHHHHH-----HhcCCEEEECCC
Confidence            43322 22222     257899986544

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=80.56  E-value=25  Score=31.20  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+..+.+..+.   ...
T Consensus       171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~---~~~  242 (350)
T cd08256         171 NIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVEKIKELT---GGY  242 (350)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh---CCC
Confidence            34456677665553 3445566677654 3468899988876655443    3442111111122223222221   123


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|+++-....   ...+..+.+.++++|.++.-.
T Consensus       243 ~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~g  274 (350)
T cd08256         243 GCDIYIEATGH---PSAVEQGLNMIRKLGRFVEFS  274 (350)
T ss_pred             CCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEc
Confidence            58988743221   124667788999999987643

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=80.40  E-value=24  Score=27.06  Aligned_cols=77  Identities=19%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             EEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          122 RCIEVGVYTGYSSLAIALVL--PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      +|+=+|||  ..+..+++.+  ..-++++.+|.+.                   ...+.+++.+++.+..-+++.+....
T Consensus         1 ~VliiG~G--glGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVGLG--GLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI   78 (143)
T ss_pred             CEEEECCC--HHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence            47778886  3333333332  1135888888651                   22345566666555433455555444


Q ss_pred             hHH-HHHHHhCCCCCceEEEEEcCCc
Q 024097          181 ADS-LKALILNGEASSYDFAFVDAEK  205 (272)
Q Consensus       181 ~~~-~~~~~~~~~~~~fDlV~~d~~~  205 (272)
                      .+. ...+     -..||+|+...+.
T Consensus        79 ~~~~~~~~-----~~~~diVi~~~d~   99 (143)
T cd01483          79 SEDNLDDF-----LDGVDLVIDAIDN   99 (143)
T ss_pred             ChhhHHHH-----hcCCCEEEECCCC
Confidence            332 1122     2689999876554

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=80.35  E-value=29  Score=27.93  Aligned_cols=77  Identities=14%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             EEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh------------------hHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          122 RCIEVGVYT-GYSSLAIALVLPESGCLVACERDA------------------RSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       122 ~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +|+-+|||. |......+...+ -++++.+|.+.                  ...+.+++++++.+..-+++.+.....+
T Consensus         1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            478889873 443333222233 35799999875                  2344556666655544345555444322


Q ss_pred             -HHHHHHhCCCCCceEEEEEcCC
Q 024097          183 -SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       183 -~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                       ....+     -..+|+|+...+
T Consensus        80 ~~~~~~-----l~~~DlVi~~~d   97 (174)
T cd01487          80 NNLEGL-----FGDCDIVVEAFD   97 (174)
T ss_pred             hhHHHH-----hcCCCEEEECCC
Confidence             22222     257999886543

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=80.34  E-value=34  Score=29.73  Aligned_cols=82  Identities=11%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChh-------------------HHHHHHHHHHHhCCCCCEEEEE
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDAR-------------------SLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~-------------------~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ....+|+=+||| .|..+...+...+ -++++.+|.+.-                   ..+.+++++...+..-+++.+.
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            356789999997 3444444333333 368999987621                   1234555665554443454443


Q ss_pred             cChh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097          178 GLAA-DSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       178 ~d~~-~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .-.. +....+.    ...||+|+...+
T Consensus       107 ~~i~~e~~~~ll----~~~~D~VIdaiD  130 (268)
T PRK15116        107 DFITPDNVAEYM----SAGFSYVIDAID  130 (268)
T ss_pred             cccChhhHHHHh----cCCCCEEEEcCC
Confidence            2111 2222221    246999886543

>PRK07582 cystathionine gamma-lyase; Validated

Probab=80.34  E-value=45  Score=30.19  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      |....+-..+.... +..++-+|+|+......+...+.++.+|+..+..- .....++..++..|.  ++.++.  ..+.
T Consensus        51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~--~~~~  125 (366)
T PRK07582         51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAP--TAGM  125 (366)
T ss_pred             ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEEC--CCCh
Confidence            33444444444444 44566688888766655555566667888876554 333444444444443  244443  2221


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCC-CCcEEEEeCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIR-VGGIIVIDNVLW  232 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLk-pgG~lvi~d~~~  232 (272)
                      ....     ....++|++..+..  .....++.+.++.+ .|..+++|++..
T Consensus       126 ~~~~-----~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~  172 (366)
T PRK07582        126 AEAA-----LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA  172 (366)
T ss_pred             HHHh-----ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence            1111     23567888764421  11122444444443 467788888753

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.22  E-value=23  Score=29.88  Aligned_cols=80  Identities=9%  Similarity=0.039  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .++++|-.|.++ +..+..+++.+. .+.+|+.++.+....+.+++    .. ..++.++..|..+.  ...+.+.-  .
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~----~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK----LV-DEEDLLVECDVASDESIERAFATIKER   80 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh----hc-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899888774 567777777663 46789988877433222222    11 13577888887642  12211110  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+.+|+++.++
T Consensus        81 ~g~iD~lv~nA   91 (252)
T PRK06079         81 VGKIDGIVHAI   91 (252)
T ss_pred             hCCCCEEEEcc
Confidence            25789988654

>PRK08265 short chain dehydrogenase; Provisional

Probab=80.21  E-value=22  Score=30.21  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+     ..++.++.+|..+.  +..+...  ...
T Consensus         5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4568887775 4557777766652 3679999999876544333222     23588888887653  1111110  012


Q ss_pred             CceEEEEEcC
Q 024097          194 SSYDFAFVDA  203 (272)
Q Consensus       194 ~~fDlV~~d~  203 (272)
                      +..|.++..+
T Consensus        79 g~id~lv~~a   88 (261)
T PRK08265         79 GRVDILVNLA   88 (261)
T ss_pred             CCCCEEEECC
Confidence            5689888654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.12  E-value=26  Score=30.43  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHH-------HhCC-C--------CCEEEEEcChhHHH
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGV-S--------HKVKIKHGLAADSL  184 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~-------~~~~-~--------~~v~~~~~d~~~~~  184 (272)
                      +|.=||+|  ..+..++..+. .+.+|+.+|++++.++.+++.++       +.+. .        .++++. .|.    
T Consensus         5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~----   77 (282)
T PRK05808          5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL----   77 (282)
T ss_pred             EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH----
Confidence            56677775  33333333321 14589999999998876554332       2221 1        122221 222    


Q ss_pred             HHHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCCCCcEEE
Q 024097          185 KALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLkpgG~lv  226 (272)
                      ..+      ...|+|+.......  -...++.+.+.++++.+++
T Consensus        78 ~~~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~  115 (282)
T PRK05808         78 DDL------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA  115 (282)
T ss_pred             HHh------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence            111      46799988765332  2577888888888887663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	272
3cbg_A	232	Functional And Structural Characterization Of A Cat		2e-48
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-43
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		9e-42
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-38
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		3e-32
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		3e-31
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-30
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		4e-26
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		5e-21
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		2e-13
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		7e-10
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		2e-06
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		2e-06
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		3e-06
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		5e-06
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		5e-06
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		1e-05
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		1e-04

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 140/212 (66%), Gaps = 1/212 (0%)
Query: 62  NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            K +    P LY Y+   +  +   L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14  GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           ++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+ K+ ++ G A
Sbjct: 74  KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
             +L+ L        +D  F+DA+KR Y  Y+E+ L L+R GG++VIDNVLWHGKV +  
Sbjct: 134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVD 193
Query: 241 VNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
             +A+T  ++ FN++L +DERV IS+  + D 
Sbjct: 194 PQEAQTQVLQQFNRDLAQDERVRISVIPLGDG 225

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  170 bits (431), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 2/207 (0%)
Query: 68  VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
           +TP LY Y+L+ ++REP +L +LREET         Q +P+QAQLLA+LV++  A++ I+
Sbjct: 11  LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
           +G +TGYS++A  L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct: 71  IGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130
Query: 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245
            LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD+      
Sbjct: 131 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 190
Query: 246 TISIRNFNKNLMEDERVSISMKEVQDA 272
              IR FN+ + +DERV   +  + D 
Sbjct: 191 NQLIRLFNQKVYKDERVDXILIPIGDG 217

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  166 bits (421), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 130/208 (62%), Gaps = 1/208 (0%)
Query: 66  ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L  ++RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125
Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
            +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+I IDN+ W GKV D      
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG 185
Query: 245 KTISIRNFNKNLMEDERVSISMKEVQDA 272
           +T  I+  N+ +  D RV +S+  + D 
Sbjct: 186 QTREIKKLNQVIKNDSRVFVSLLAIADG 213

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 138/223 (61%), Gaps = 12/223 (5%)
Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 181 ADSLKALILNGEASSY--DFA---------FVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++L+ LI +  A S+  DFA         F+DA+K  Y  Y+ L+L+L++ GG+++ DN
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181
Query: 230 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           VLW G VAD    +  T+ IR FN+ +  D  V +S+  + D 
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADG 224

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%)
Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
            + +   SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V      DA   
Sbjct: 149 KDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV--APPDAPLR 206
Query: 248 S----IRNF----NKNLMEDERVSISMKEVQDA 272
                 R+F    NK L  D R+ I M  V D 
Sbjct: 207 KYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 5/218 (2%)
Query: 60  YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           +  ++   + PP    L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124
Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW G
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184
Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
           KV      D     +RN N+ +  D RV IS+  + D 
Sbjct: 185 KVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG 222

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 19/204 (9%)
Query: 75  YILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTG 131
           YILR     RE   L++LRE       S M  SP   QL++ +++++ A++ IEVGV+TG
Sbjct: 23  YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTG 82
Query: 132 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL--IL 189
           YS L  AL +P+ G + A + D  + E+   +  +AGV HK+     + +D++ AL  +L
Sbjct: 83  YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF---IESDAMLALDNLL 139
Query: 190 NGEAS--SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA-------DQM 240
            G+ S  SYDF FVDA+K  Y +Y E L++L++VGGI+  DN LW G VA       D M
Sbjct: 140 QGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFM 199
Query: 241 VNDAKTISIRNFNKNLMEDERVSI 264
             + +  ++   NK L  D R+ I
Sbjct: 200 KENRE--AVIELNKLLAADPRIEI 221

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           VSP Q + L +LVQI GA+  +E+G   GYS++ +A  L   G +V  E   +  ++A+ 
Sbjct: 42  VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
             ERA ++ +V+++ GLA DSL+  I N +   +DF F+DA+K+    YFE  L+L R G
Sbjct: 102 NIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG 160
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 263
            +I+ DNV+  G+V D   ND +   IR F + +  + RVS
Sbjct: 161 TVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           V+ +Q Q LA+LV++  A+R +E+G   GYS++  A  LP  G L+  E DA   +VA++
Sbjct: 47  VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARE 106
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
             + AGV  +V ++ G A  SL++L   GE  ++D  F+DA+K     Y    L+  R G
Sbjct: 107 NLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 265
            +I+ DNV+  G+V +    D +   +R F +    + R++ +
Sbjct: 164 TLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTAT 206

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L  L++     R +E+G   GYS++  A  LPE+  +V+ ERD R  E A K+ +  G+ 
Sbjct: 46  LLHLLKXAAPARILEIGTAIGYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLE 104
Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
            ++++  G A    + L L      +D  F+DA K  Y+ +F+     +R GG+I+ DNV
Sbjct: 105 SRIELLFGDALQLGEKLELY---PLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNV 161
Query: 231 LWHGKVADQMVNDAK----TISIRNFNKNLMEDERVSISMKEVQDA 272
           L+ G VA+  +   +       I  +N+ L+E  +    +  V D 
Sbjct: 162 LFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDG 207

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 169
           L+  L++    +  +E+G   GYSS   A +  +   +   ER+   ++ AK+       
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++V+I  G A +  +    N     YD  F+DA K   +++FE+   L++  G+++ DN
Sbjct: 121 ENQVRIIEGNALEQFE----NVNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDN 176
Query: 230 VLWHGKVAD 238
           VL+HG V+D
Sbjct: 177 VLYHGFVSD 185

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 14  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 73
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 74  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 133
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
             + D  F+D  K  Y     LL +  L+R G +++ DNV+  G
Sbjct: 134 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 99  QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 159 LRKGTVLLADNVICPG 174

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 42  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 161
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 162 LRKGTVLLADNVICPG 177

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
           ++  + AG+  KV +  G + D +  L    +  + D  F+D  K  Y     LL +  L
Sbjct: 99  QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
           +R G +++ DNV+  G
Sbjct: 159 LRKGTVLLADNVICPG 174

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 107 QAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163
           Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+AK+ 
Sbjct: 60  QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 119
Query: 164 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
            ER G+ + + +      D    +    E S YD  FV
Sbjct: 120 VERLGIENVIFV----CGDGYYGV---PEFSPYDVIFV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	8e-97
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	7e-95
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	3e-94
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	2e-93
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-93
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	2e-93
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	3e-92
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	3e-92
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	2e-88
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	3e-83
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-82
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	3e-82
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	8e-81
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	2e-78
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	5e-09
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	6e-08
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	7e-08
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-07
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	7e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-06
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	2e-06
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	4e-06
2b25_A	336	Hypothetical protein; structural genomics, methyl	8e-06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	9e-06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	2e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	2e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-04
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	2e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-04
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	4e-04
2h00_A	254	Methyltransferase 10 domain containing protein; st	6e-04

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  283 bits (725), Expect = 8e-97
 Identities = 90/216 (41%), Positives = 141/216 (65%), Gaps = 3/216 (1%)

Query: 54  SAHDEKYSN--KQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQL 110
           S H   + +  K +    P LY Y+      +   L QLR ETA + G+ MQ+SP+QAQ 
Sbjct: 4   SHHHHHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQF 63

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L +L+ + GA++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+
Sbjct: 64  LGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA 123

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
            K+ ++ G A  +L+ L        +D  F+DA+KR Y  Y+E+ L L+R GG++VIDNV
Sbjct: 124 EKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV 183

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 266
           LWHGKV +    +A+T  ++ FN++L +DERV IS+
Sbjct: 184 LWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISV 219

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  278 bits (713), Expect = 7e-95
 Identities = 57/207 (27%), Positives = 107/207 (51%), Gaps = 4/207 (1%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119
             + +      + +Y+++  +    +L ++ E           V+ +Q Q LA+LV++  
Sbjct: 4   GKRHMQQQWSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQ 63

Query: 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179
           A+R +E+G   GYS++ +A  LP  G L+  E DA   +VA++  + AGV  +V ++ G 
Sbjct: 64  AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ 239
           A  SL++L   GE  ++D  F+DA+K     Y    L+  R G +I+ DNV+  G+V + 
Sbjct: 124 ALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNP 180

Query: 240 MVNDAKTISIRNFNKNLMEDERVSISM 266
              D +   +R F + +  + R++ + 
Sbjct: 181 QSADERVQGVRQFIEMMGAEPRLTATA 207

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  276 bits (709), Expect = 3e-94
 Identities = 79/202 (39%), Positives = 127/202 (62%), Gaps = 1/202 (0%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L   +RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
            +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+I IDN+ W GKV D      
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG 185

Query: 245 KTISIRNFNKNLMEDERVSISM 266
           +T  I+  N+ +  D RV +S+
Sbjct: 186 QTREIKKLNQVIKNDSRVFVSL 207

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  274 bits (704), Expect = 2e-93
 Identities = 85/217 (39%), Positives = 133/217 (61%), Gaps = 12/217 (5%)

Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121

Query: 181 ADSLKALILNGEAS-----------SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
            ++L+ LI +  A            S D  F+DA+K  Y  Y+ L+L+L++ GG+++ DN
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181

Query: 230 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 266
           VLW G VAD    +  T+ IR FN+ +  D  V +S+
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSL 218

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  274 bits (702), Expect = 2e-93
 Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 2/202 (0%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           I     +  Y+    + +   L ++ +  A        VSP Q + L +LVQI GA+  +
Sbjct: 4   IETWTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNIL 63

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G   GYS++ +A  L   G +V  E   +  ++A+   ERA ++ +V+++ GLA DSL
Sbjct: 64  EIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
           + +  N +   +DF F+DA+K+    YFE  L+L R G +I+ DNV+  G+V D   ND 
Sbjct: 124 QQIE-NEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDP 182

Query: 245 KTISIRNFNKNLMEDERVSISM 266
           +   IR F + +  + RVS + 
Sbjct: 183 RVQGIRRFYELIAAEPRVSATA 204

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  273 bits (701), Expect = 2e-93
 Identities = 87/208 (41%), Positives = 136/208 (65%), Gaps = 3/208 (1%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAG-MRGSQMQVSPDQAQLLAMLVQIL 118
           S      +TP LY Y+L+  +REP +L +LREET        MQ +P+QAQLLA+LV+++
Sbjct: 5   SINT-TLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLM 63

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A++ I++G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++  
Sbjct: 64  QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238
            A D+L  LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNVL  G+VAD
Sbjct: 124 PAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVAD 183

Query: 239 QMVNDAKTISIRNFNKNLMEDERVSISM 266
           +         IR FN+ + +DERV + +
Sbjct: 184 EENQSENNQLIRLFNQKVYKDERVDMIL 211

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  271 bits (695), Expect = 3e-92
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 10/221 (4%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
           A  ++  N   +  +  L  YILR     RE   L++LRE       S M  SP   QL+
Sbjct: 4   AVMKQVKNTG-LLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLM 62

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           + +++++ A++ IEVGV+TGYS L  AL +P+ G + A + D  + E+   +  +AGV H
Sbjct: 63  SFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEH 122

Query: 172 KVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
           K+      A  +L  L+   E+  SYDF FVDA+K  Y +Y E L++L++VGGI+  DN 
Sbjct: 123 KINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT 182

Query: 231 LWHGKVAD-----QMVNDAKTISIRNFNKNLMEDERVSISM 266
           LW G VA               ++   NK L  D R+ I  
Sbjct: 183 LWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVH 223

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  271 bits (694), Expect = 3e-92
 Identities = 76/212 (35%), Positives = 119/212 (56%), Gaps = 4/212 (1%)

Query: 59  KYSNKQVISVTP---PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
               ++   + P    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW G
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184

Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISM 266
           KV      D     +RN N+ +  D RV IS+
Sbjct: 185 KVLQPPKGDVAAECVRNLNERIRRDVRVYISL 216

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  262 bits (671), Expect = 2e-88
 Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 10/215 (4%)

Query: 62  NKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL 118
             + +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A+  +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G
Sbjct: 79  NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

Query: 179 LAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA 237
            A   L  +I + +   SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V 
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV 198

Query: 238 DQMVNDAK------TISIRNFNKNLMEDERVSISM 266
                  +         +   NK L  D R+ I M
Sbjct: 199 APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICM 233

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  248 bits (635), Expect = 3e-83
 Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 14/220 (6%)

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
              H      +    +      Y++  +  +   +  LRE           V      L+
Sbjct: 7   HHHHSSGLVPRG-SHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLI 63

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             L+++   +  +E+G   GYSS+  A  + +   +   ER+   ++ AK+        +
Sbjct: 64  KQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFEN 122

Query: 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231
           +V+I  G A +  + +        YD  F+DA K   +++FE+   L++  G+++ DNVL
Sbjct: 123 QVRIIEGNALEQFENV----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVL 178

Query: 232 WHGKVADQMVNDAK-----TISIRNFNKNLMEDERVSISM 266
           +HG V+D  +  ++        ++++N+ L++    + + 
Sbjct: 179 YHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNF 218

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  245 bits (628), Expect = 2e-82
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 10/200 (5%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           V   +  Y+         ++  + +           V     +LL +L +I   Q  +  
Sbjct: 6   VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVP 63

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   G +S   A  +  S  +V  + D  ++E A++     G+  +V+++ G        
Sbjct: 64  GDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG 123

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKT 246
                     D  F+D +     +  E + + +    +++  N L  G VA+    D +T
Sbjct: 124 Q------RDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES-HEDPET 176

Query: 247 ISIRNFNKNLMEDERVSISM 266
            ++R FN +L        ++
Sbjct: 177 AALREFNHHLSRRRDFFTTI 196

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  246 bits (629), Expect = 3e-82
 Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           +   L  Y+ +      + + Q+  E    +   M       + L  L+++    R +E+
Sbjct: 4   IEERLKHYLEKQIPARDQYIEQMEREAHEQQVPIMD--LLGMESLLHLLKMAAPARILEI 61

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   GYS++ +A  LPE   +V+ ERD R  E A K+ +  G+  ++++  G A    + 
Sbjct: 62  GTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVN 242
           L L      +D  F+DA K  Y+ +F++   ++R GG+I+ DNVL+ G VA+       +
Sbjct: 121 LELYP---LFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRH 177

Query: 243 DAKTISIRNFNKNLMEDERVSISM 266
                 I  +N+ L+E  +    +
Sbjct: 178 KQLATKIDTYNQWLLEHPQYDTRI 201

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  241 bits (618), Expect = 8e-81
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 10/204 (4%)

Query: 67  SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL---GAQRC 123
           +    L  Y+         + + RE+ A              QLL  L       G+   
Sbjct: 3   NAFEYLRTYVESTTETDAAVARAREDAAEF--GLPAPDEMTGQLLTTLAATTNGNGSTGA 60

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAAD 182
           I +    G   L I   L ++  L   + ++     AK  +  AG    +V+       D
Sbjct: 61  IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120

Query: 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN 242
            +  L       SY   F        +   +    L+R GG +V+ + L  G +ADQ   
Sbjct: 121 VMSRL----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRK 176

Query: 243 DAKTISIRNFNKNLMEDERVSISM 266
           D  T + R+ ++ +   E   ++ 
Sbjct: 177 DRDTQAARDADEYIRSIEGAHVAR 200

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  236 bits (603), Expect = 2e-78
 Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 11/204 (5%)

Query: 72  LYDYILRNV--REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N    +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 9   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 68

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 69  CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 128

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
             +  + D  F+D  K  Y     LL    L+R G +++ DNV+  G             
Sbjct: 129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF-------LA 181

Query: 248 SIRNFNKNLMEDERVSISMKEVQD 271
            +R  +          +   +V D
Sbjct: 182 YVRGSSSFECTHYSSYLEYMKVVD 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 5e-12
 Identities = 45/291 (15%), Positives = 82/291 (28%), Gaps = 89/291 (30%)

Query: 10  FAFVLLKTEKTVAKF--------HSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYS 61
           F  +L K E+ V KF        + F L   ++      +  +  T         D  Y+
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQ---RQPSMMTRM--YIEQRDRLYN 121

Query: 62  NKQVISVTPPLYDYILRNVREPEI-------LRQLREETA----GMRGSQMQVSPDQAQL 110
           + QV             NV   +        L +LR        G+ GS          +
Sbjct: 122 DNQVF---AK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW------V 166

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
              +      Q  ++  ++  + +L              C      LE+ +K        
Sbjct: 167 ALDVCLSYKVQCKMDFKIF--WLNLK------------NCNSPETVLEMLQKLL------ 206

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY---QEYFELLLQLIRVGGIIVI 227
           +++       +D    + L   +       + AE R     + Y   LL         V+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLL---------VL 250

Query: 228 DNVLWHGKVADQMVNDAKTI------SIRNFNKNLMEDERVSISMKEVQDA 272
            NV  + K  +      K +       + +F   L       IS+      
Sbjct: 251 LNV-QNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMT 297

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           L +E   M+     V P  +  +AM++ +    R I+ GV +G     +A  +  SG + 
Sbjct: 82  LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVF 141

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208
           A E+     ++A+    + G+  +V IK    ++         +    D  F+D      
Sbjct: 142 AYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-------GFDEKDVDALFLDVPDP-- 192

Query: 209 QEYFELLLQLIRVGGIIVI 227
             Y +   + ++ GG    
Sbjct: 193 WNYIDKCWEALKGGGRFAT 211

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 51.4 bits (122), Expect = 6e-08
 Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 16/148 (10%)

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
              R +EVG     ++  +     +       E +    +  + +  R    HKV    G
Sbjct: 60  KGGRVLEVGFGMAIAASKVQEAPIDE--HWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQE--------YFELLLQLIRVGGIIVIDNV 230
           L  D    L        +D    D      +               +L++ GG++   N+
Sbjct: 116 LWEDVAPTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171

Query: 231 LWHGKVADQMVNDAKTISIRNFNKNLME 258
              G++     +D   +        L+E
Sbjct: 172 TSWGELMKSKYSDITIMFEETQVPALLE 199

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 51.2 bits (122), Expect = 7e-08
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 9/139 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           + +    M+     V P  A L+     I      +E GV +G  +L +A ++   G +V
Sbjct: 63  IVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVV 122

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208
           + E      ++A +  + AG   +V IK     + +       E  + D   +D  +   
Sbjct: 123 SYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENVDHVILDLPQP-- 173

Query: 209 QEYFELLLQLIRVGGIIVI 227
           +   E   + ++ GG  V 
Sbjct: 174 ERVVEHAAKALKPGGFFVA 192

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 25/171 (14%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ 116
           DE   + +   V+     Y  R +R               R +Q+    D + ++     
Sbjct: 64  DELIVSGKSFIVSDFSPMYFGRVIR---------------RNTQIISEIDASYIIMRC-G 107

Query: 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176
           +      +EVGV +G  S  I   L   G L   ERD  +L+ A            V+  
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 167

Query: 177 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
               AD             YD    D        + + +  +++ G +   
Sbjct: 168 RSDIAD-------FISDQMYDAVIADI--PDPWNHVQKIASMMKPGSVATF 209

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
             ++ +  +       ++VG  TG  +L +A  +     + A +R+  ++   +   +R 
Sbjct: 23  CLIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRH 78

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           G+   V +  G A ++L  +         D A V       QE   ++   ++ GG I++
Sbjct: 79  GLGDNVTLMEGDAPEALCKI------PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 11/133 (8%)

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             + M V+       ++     G  +  +A ++ E+G +   +   +++    K      
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRV 221
           +  +V +      +  K +    +A  ++  ++ +             +     ++L+  
Sbjct: 72  LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131

Query: 222 GGIIVIDNVLWHG 234
           GGII +  V+++G
Sbjct: 132 GGIITV--VIYYG 142

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  LA L      +   ++G  +G  S+   L        +  E  A  +E  +K  +  
Sbjct: 45  ALTLAAL-APRRGELLWDIGGGSGSVSVEWCLAGGR---AITIEPRADRIENIQKNIDTY 100

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           G+S +++   G A  +L  L         +  F+       Q  ++ L + +  G  IV 
Sbjct: 101 GLSPRMRAVQGTAPAALADL------PLPEAVFIGGGGS--QALYDRLWEWLAPGTRIVA 152

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 27/169 (15%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 58  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 100

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHG 178
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             ++   
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
             AD            S D A +D       E  + + +L+  GG++++
Sbjct: 161 DLAD------SELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMV 201

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 84  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 142

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASSYDFAFVDAEKRMYQE 210
            ++AKK Y+    S K+        +       +     + ++ ++D   +D        
Sbjct: 143 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HV 200

Query: 211 YFELLLQLIRVGGIIVI 227
              +    ++ GG+  +
Sbjct: 201 TLPVFYPHLKHGGVCAV 217

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 27/158 (17%)

Query: 70  PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           P L + IL                   R +Q+ + P  +  +A+ + +   +R +E G  
Sbjct: 58  PTLEEIILLGFE---------------RKTQI-IYPKDSFYIALKLNLNKEKRVLEFGTG 101

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
           +G     ++ V   +G +   E      + A+K  ++  +   VK  +    D+      
Sbjct: 102 SGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA------ 152

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
                 +  AFVD   R    Y E + + +  G  +  
Sbjct: 153 EVPEGIFHAAFVDV--REPWHYLEKVHKSLMEGAPVGF 188

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  L+ L ++       ++G  +   S+  A  L  +G + A ER+ + L   +   ++ 
Sbjct: 30  AVTLSKL-RLQDDLVMWDIGAGSASVSIE-ASNLMPNGRIFALERNPQYLGFIRDNLKKF 87

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
              + V +    A + L  L         D  F+     M +E  + + + ++  G+IV+
Sbjct: 88  VARN-VTLVEAFAPEGLDDL------PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVL 140

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +     P  A  +  L+ +    R +E G  +G  +L +A  + E G + + E     
Sbjct: 75  RSATP-TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHH 133

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216
           L  A++          V+   G   ++        E ++YD   +D       +  E   
Sbjct: 134 LAQAERNVRAFWQVENVRFHLGKLEEA------ELEEAAYDGVALDL--MEPWKVLEKAA 185

Query: 217 QLIRVGGIIVI 227
             ++    +V 
Sbjct: 186 LALKPDRFLVA 196

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 9/124 (7%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  ++ L      +   ++G  +G  ++      P+    V  E      E         
Sbjct: 15  ALAISAL-APKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINL 72

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
           GVS         A  +   +       + D  F+          F    + + VGG +V 
Sbjct: 73  GVSD-RIAVQQGAPRAFDDV-----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVA 125

Query: 228 DNVL 231
           + V 
Sbjct: 126 NAVT 129

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Length = 236

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERD 153
           RG +M   PD   +   ++  L  +  +E+GVY G S      +         ++  +RD
Sbjct: 59  RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRD 118

Query: 154 ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213
               ++     E       + +  G  +D      L   A  +   F+D          +
Sbjct: 119 LSRCQIPASDMEN------ITLHQGDCSDLTTFEHLREMA--HPLIFIDNAHANTFNIMK 170

Query: 214 LLL-QLIRVGGIIVID 228
             +  L+  G   +I+
Sbjct: 171 WAVDHLLEEGDYFIIE 186

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 10/145 (6%)

Query: 87  RQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC 146
           R   E    +  ++ +    +  L   L           V        LA+         
Sbjct: 89  RVFYERLPAVLATRERHGHFRRALQRHLRP---GCVVASVPCGWMSELLALDYSACPGVQ 145

Query: 147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE---ASSYDFAFVDA 203
           LV  + D  +L+ A +      ++ ++ +    A      L         +S      + 
Sbjct: 146 LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK----LDTREGYDLLTSNGLNIYEP 201

Query: 204 EKRMYQEYFELLLQLIRVGGIIVID 228
           +     E +    Q ++ GG +V  
Sbjct: 202 DDARVTELYRRFWQALKPGGALVTS 226

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 21/137 (15%)

Query: 106 DQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGC--LVACERDARSLEVAKK 162
           DQ +    L + +    R ++V  YTG  ++  A+    +G   ++  ++  R++E AK+
Sbjct: 203 DQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAI----AGADEVIGIDKSPRAIETAKE 258

Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------------AEKRMYQE 210
             +  GV  ++K   G A + ++ L   GE   +D   +D            A  R Y  
Sbjct: 259 NAKLNGVEDRMKFIVGSAFEEMEKLQKKGE--KFDIVVLDPPAFVQHEKDLKAGLRAYFN 316

Query: 211 YFELLLQLIRVGGIIVI 227
                L L++ GGI+V 
Sbjct: 317 VNFAGLNLVKDGGILVT 333

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           R I++G  TG S +   L    +G   +A E D      AKK  E+  +S  +K+     
Sbjct: 68  RGIDIG--TGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 125

Query: 181 ADSLKALILNGEASSYDFAFVD 202
              L   +       YDF   +
Sbjct: 126 KTLLMDALKEESEIIYDFCMCN 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.98
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.97
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.97
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.8
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.72
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.71
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.71
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.71
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.7
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.7
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
2o07_A	304	Spermidine synthase; structural genomics, structur	99.7
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.69
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.69
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.69
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.68
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.68
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.66
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.65
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.65
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.65
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.65
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.65
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.61
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.61
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.61
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.61
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.6
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.6
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.6
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.6
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.6
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.6
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.6
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.6
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.59
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.59
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.59
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.59
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.59
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.58
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.58
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.58
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.58
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.58
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.58
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.58
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.58
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.58
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.57
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.57
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.57
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.57
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.57
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.57
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.57
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.57
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.57
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.56
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.56
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.56
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.56
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.56
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.56
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.55
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.55
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.55
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.55
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.54
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.54
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.54
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.54
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.54
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.53
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.53
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.53
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.52
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.52
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.52
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.52
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.52
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.52
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.51
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.51
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.51
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.51
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.51
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.51
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.5
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.5
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.5
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.49
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.49
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.49
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.48
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.48
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.48
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.48
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.48
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.48
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.48
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.48
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.48
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.48
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.47
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.47
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.47
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.47
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.46
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.46
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.46
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.46
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.45
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.45
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.45
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.45
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.45
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.44
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.44
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.44
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.44
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.44
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.44
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.44
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.44
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.44
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.44
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.43
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.43
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.42
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.42
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.42
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.41
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.41
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.41
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.41
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.41
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.4
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.4
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.4
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.39
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.38
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.38
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.37
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.37
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.37
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.37
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.37
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.36
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.35
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.35
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.34
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.34
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.33
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.32
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.3
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.3
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.3
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.3
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.3
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.26
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.26
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.25
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.25
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.25
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.25
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.23
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.22
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.22
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.22
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.21
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.21
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.2
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.2
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.16
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.15
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.15
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.13
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.13
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.13
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.13
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.12
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.09
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.09
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.06
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.05
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.04
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	99.04
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.02
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.01
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.99
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.98
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.97
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.95
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.94
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.86
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.86
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.85
3khk_A	544	Type I restriction-modification system methylation	98.8
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.76
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.74
3lkd_A	542	Type I restriction-modification system methyltrans	98.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.72
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.7
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.6
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.37
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.32
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.26
3ufb_A	530	Type I restriction-modification system methyltran	98.15
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.08
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.03
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.99
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.98
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.86
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.81
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.78
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.76
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.73
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.69
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.68
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.58
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.37
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.34
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.21
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.16
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.07
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.02
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.01
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.99
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.92
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.89
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.88
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.8
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.79
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.78
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.76
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.72
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.67
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.64
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.53
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.53
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.53
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.47
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.45
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.44
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.42
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.42
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.36
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.35
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.34
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.31
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.31
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.29
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.29
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.27
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.25
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.22
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.22
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.18
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.17
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.14
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.12
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.11
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.1
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.06
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.94
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.88
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.86
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.82
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.81
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.81
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.8
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.71
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.68
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.45
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.44
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.43
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.43
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.42
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.42
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.4
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.36
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.35
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.17
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.16
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.12
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.01
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.0
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.0
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.87
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.8
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.74
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.67
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.65
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	94.54
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.53
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.52
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.48
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.16
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.05
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.76
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.75
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.68
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.57
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.41
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	93.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.31
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.26
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.22
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.21
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.19
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.85
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.82
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.81
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	92.76
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.7
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.47
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.47
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.45
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.07
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.02
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.02
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.92
3me5_A	482	Cytosine-specific methyltransferase; structural ge	91.91
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.87
1lnq_A	336	MTHK channels, potassium channel related protein;	91.71
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.6
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.53
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.3
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.24
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.04
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.03
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.73
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.5
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.22
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	90.12
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.91
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	89.87
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.85
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	89.81
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	89.72
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	89.71
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.67
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	89.14
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	89.0
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	88.81
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	88.72
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	88.72
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	88.67
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	88.45
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	88.3
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	88.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	87.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.51
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	87.41
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	87.31
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	87.3
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	87.2
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	87.04
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	86.99
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.93
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.91
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	86.9
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	86.74
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	86.59
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	86.52
4g65_A	461	TRK system potassium uptake protein TRKA; structur	86.47
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	86.23
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	86.11
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	85.99
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	85.68
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	85.67
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	85.63
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.58
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.46
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	85.44
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	85.43
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.2
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.03
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	84.77
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	84.66
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	84.54
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.41
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	84.4
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	84.13
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	84.11
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	84.04
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	84.01
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	83.99
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	83.84
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	83.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	83.66
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	83.3
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	83.17
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	83.12
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	82.84
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	82.64
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.44
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	81.9
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	81.89
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	81.83
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	81.63
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	81.6
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	81.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	81.15
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	81.06
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	80.97
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	80.84
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	80.8
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	80.8
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	80.65
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	80.36

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=1.2e-35  Score=253.47  Aligned_cols=209  Identities=38%  Similarity=0.708  Sum_probs=188.8

Q ss_pred             ccCCCChhHHHHHHhc-cCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097           64 QVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (272)
Q Consensus        64 ~~~~~~~~l~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~  142 (272)
                      ....+++.+.+|+.++ ..+++.+.++++.+.....+.|.+++..++++..++...++++|||||||+|++++++++.++
T Consensus         4 ~~~~~~~~~~~Y~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~   83 (242)
T 3r3h_A            4 KHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALP   83 (242)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSC
T ss_pred             CcccCCHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCC
Confidence            3456788999999997 456789999988876665567789999999999999999999999999999999999999987


Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  222 (272)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg  222 (272)
                      ++++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+...++.++||+||+++....+..+++.+.++|+||
T Consensus        84 ~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG  163 (242)
T 3r3h_A           84 DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPK  163 (242)
T ss_dssp             TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEE
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCC
Confidence            68999999999999999999999999988999999999987776533222378999999999889999999999999999


Q ss_pred             cEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       223 G~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |+|+++|+.|.|.+.++...+..+.++++|++.+.++|+|+++++|+|||
T Consensus       164 G~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  213 (242)
T 3r3h_A          164 GLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADG  213 (242)
T ss_dssp             EEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSC
T ss_pred             eEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCc
Confidence            99999999999999998888888999999999999999999999999998

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=4.4e-35  Score=246.68  Aligned_cols=198  Identities=20%  Similarity=0.270  Sum_probs=180.2

Q ss_pred             ChhHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCC---EEEEEcCccCHHHHHHHHHCCCCc
Q 024097           69 TPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ---RCIEVGVYTGYSSLAIALVLPESG  145 (272)
Q Consensus        69 ~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~VLEiG~G~G~~~~~la~~~~~~~  145 (272)
                      .+.+.+|+.+...+++.+.++++.+....  .+.+.+..++++..++...+++   +|||||||+|++++++++.+++++
T Consensus         5 ~~~~~~y~~~~~~~~~~l~~~~~~a~~~~--~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (221)
T 3dr5_A            5 FEYLRTYVESTTETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT   82 (221)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCC
Confidence            35688999998888999999998887653  3457899999999999988888   999999999999999999987789


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcE
Q 024097          146 CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI  224 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~  224 (272)
                      +|+++|+++++++.|+++++..++. ++++++++|+.+.++.+    ..++||+||++.....+..+++.+.++|||||+
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  158 (221)
T 3dr5_A           83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGA  158 (221)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS----CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh----cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcE
Confidence            9999999999999999999999998 78999999998876543    137899999999999999999999999999999


Q ss_pred             EEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          225 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       225 lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |+++|++|.|.+.++..++..+.++++|++++.++|+++++++|+|||
T Consensus       159 lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdG  206 (221)
T 3dr5_A          159 LVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAG  206 (221)
T ss_dssp             EEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTC
T ss_pred             EEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccch
Confidence            999999999999998888888889999999999999999999999998

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=5e-33  Score=236.42  Aligned_cols=209  Identities=36%  Similarity=0.588  Sum_probs=183.5

Q ss_pred             ccCCCChhHHHHHHhcc---CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH
Q 024097           64 QVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (272)
Q Consensus        64 ~~~~~~~~l~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~  140 (272)
                      .....++.+++|+.++.   .+++.+.++++.+.....+.+.+++..++++..++...++++|||||||+|++++++++.
T Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~   91 (237)
T 3c3y_A           12 TGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALS   91 (237)
T ss_dssp             -CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             cccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHh
Confidence            34557889999999862   678999999998877666678899999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEEEEEcCCccchHHHHHHHHccC
Q 024097          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLI  219 (272)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDlV~~d~~~~~~~~~l~~~~~lL  219 (272)
                      ++++++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+..++ +.++||+||+|+....+..+++.+.++|
T Consensus        92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L  171 (237)
T 3c3y_A           92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV  171 (237)
T ss_dssp             SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHE
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhc
Confidence            887799999999999999999999999998789999999998877664332 2478999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCcccCCcCCC-----HhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          220 RVGGIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       220 kpgG~lvi~d~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      +|||+|+++|++|.|.+.++...+     .....+++|++++.++|+++++++|++||
T Consensus       172 ~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG  229 (237)
T 3c3y_A          172 KVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDG  229 (237)
T ss_dssp             EEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             CCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCc
Confidence            999999999999999988763211     13568899999999999999999999998

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=3.7e-33  Score=238.72  Aligned_cols=209  Identities=38%  Similarity=0.613  Sum_probs=183.7

Q ss_pred             ccCCCChhHHHHHHhcc---CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH
Q 024097           64 QVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (272)
Q Consensus        64 ~~~~~~~~l~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~  140 (272)
                      .....++++++|+.++.   ++++.+.++++.+.....+.|.+++..++++..++...++++|||||||+|++++++++.
T Consensus        21 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~  100 (247)
T 1sui_A           21 KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA  100 (247)
T ss_dssp             CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHH
T ss_pred             ccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHh
Confidence            34567889999999862   678899999998877666678899999999999999889999999999999999999999


Q ss_pred             CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEEEEEcCCccchHHHHHHHHccC
Q 024097          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLI  219 (272)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDlV~~d~~~~~~~~~l~~~~~lL  219 (272)
                      ++++++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+...+ ..++||+||+++....+..+++.+.++|
T Consensus       101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~L  180 (247)
T 1sui_A          101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV  180 (247)
T ss_dssp             SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhC
Confidence            876789999999999999999999999987789999999998776653221 1368999999999888999999999999


Q ss_pred             CCCcEEEEeCCCCCCcccCCcCCCH------hhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          220 RVGGIIVIDNVLWHGKVADQMVNDA------KTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       220 kpgG~lvi~d~~~~g~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      +|||+|+++|++|.|.+.++...+.      ...++++|++.+..++++.++++|++||
T Consensus       181 kpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~dG  239 (247)
T 1sui_A          181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG  239 (247)
T ss_dssp             CTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTTC
T ss_pred             CCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCCc
Confidence            9999999999999999987653322      2558999999999999999999999998

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=3.1e-32  Score=230.71  Aligned_cols=210  Identities=42%  Similarity=0.780  Sum_probs=186.3

Q ss_pred             cccCCCChhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC
Q 024097           63 KQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (272)
Q Consensus        63 ~~~~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~  141 (272)
                      +.....++.+.+|+.+.. .+++.+.++++.+.....+.|.+.+..++++..++...++++|||||||+|+++.++++.+
T Consensus        15 ~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~   94 (232)
T 3cbg_A           15 KGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQL   94 (232)
T ss_dssp             CCBTTSCHHHHHHHHHTSCCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTS
T ss_pred             cccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhC
Confidence            445567889999999874 5678999998887766555568899999999999998899999999999999999999988


Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCC
Q 024097          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (272)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkp  221 (272)
                      +++++|+++|+++++++.|+++++..++.++++++.+|+.+.++.+......++||+||+++....+..+++.+.++|+|
T Consensus        95 ~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkp  174 (232)
T 3cbg_A           95 PPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRR  174 (232)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCC
Confidence            76789999999999999999999999988789999999988776653211116899999999988899999999999999


Q ss_pred             CcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          222 GGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       222 gG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ||+|+++|+.|.|.+.++...+..+..+++|++.+.++|++.++++|++||
T Consensus       175 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  225 (232)
T 3cbg_A          175 GGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDG  225 (232)
T ss_dssp             EEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTC
T ss_pred             CeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCe
Confidence            999999999999999988777888899999999999999999999999998

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=6.1e-32  Score=227.06  Aligned_cols=209  Identities=42%  Similarity=0.740  Sum_probs=186.5

Q ss_pred             ccCCCChhHHHHHHhcc-CChHHHHHHHHHHH-cCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC
Q 024097           64 QVISVTPPLYDYILRNV-REPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (272)
Q Consensus        64 ~~~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~  141 (272)
                      ....+++.+.+|+.++. .+++.+.++++.+. ....+.+.+++..++++..++...++.+|||||||+|..+.++++.+
T Consensus         7 ~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~   86 (225)
T 3tr6_A            7 NTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLAL   86 (225)
T ss_dssp             CSCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhC
Confidence            44567889999999975 45788888888776 66666678999999999999999999999999999999999999988


Q ss_pred             CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCC
Q 024097          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (272)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkp  221 (272)
                      +++++|+++|+++++++.|+++++..++.++++++++|+.+.++.+...+..++||+||+++....+..+++.+.++|+|
T Consensus        87 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~p  166 (225)
T 3tr6_A           87 PKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLRE  166 (225)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEE
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCC
Confidence            76789999999999999999999999998889999999988776653222227899999999988899999999999999


Q ss_pred             CcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          222 GGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       222 gG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ||+|+++|+.|.|.+.++...+....++++|++.+..+++++++++|++||
T Consensus       167 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  217 (225)
T 3tr6_A          167 GGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDG  217 (225)
T ss_dssp             EEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             CcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCc
Confidence            999999999999999988877888889999999999999999999999998

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=4.6e-31  Score=222.28  Aligned_cols=206  Identities=37%  Similarity=0.611  Sum_probs=183.9

Q ss_pred             CCChhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc
Q 024097           67 SVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (272)
Q Consensus        67 ~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~  145 (272)
                      ...+.+.+|+.+.. .+++.+.++++.+.......+.+++..++++..++...++++|||||||+|.++.++++.+++++
T Consensus        16 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   95 (229)
T 2avd_A           16 PEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADG   95 (229)
T ss_dssp             CTTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             hhHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCC
Confidence            35678999999874 56889999998887765666789999999999999988999999999999999999999887678


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEE
Q 024097          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII  225 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~l  225 (272)
                      +|+++|+++.+++.|+++++..++.++++++.+|+.+.++.+...+..++||+||++.....+..+++.+.++|+|||++
T Consensus        96 ~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~l  175 (229)
T 2avd_A           96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGIL  175 (229)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEE
Confidence            99999999999999999999999877899999999887666533221268999999998888899999999999999999


Q ss_pred             EEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          226 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       226 vi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      +++|+.|.|.+.++...+....++++|++.+.++++++++++|++||
T Consensus       176 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  222 (229)
T 2avd_A          176 AVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG  222 (229)
T ss_dssp             EEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             EEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCc
Confidence            99999999999888777788899999999999999999999999998

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=5.5e-31  Score=221.05  Aligned_cols=202  Identities=32%  Similarity=0.509  Sum_probs=181.7

Q ss_pred             hhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEE
Q 024097           70 PPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV  148 (272)
Q Consensus        70 ~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~  148 (272)
                      +.+.+|+.+.. .+++.+.++++.+.....+.+.+++..++++..++...++.+|||||||+|+++.++++.++++++|+
T Consensus         8 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   87 (223)
T 3duw_A            8 TAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVV   87 (223)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEE
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEE
Confidence            45789998875 56788899988887776777788999999999999999999999999999999999999987678999


Q ss_pred             EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       149 ~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++|+++++++.|+++++..++.++++++++|+.+.++.+...+ .++||+||+++....+..+++.+.++|+|||+++++
T Consensus        88 ~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A           88 TLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK-YEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-CCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence            9999999999999999999998889999999988776654321 257999999999888999999999999999999999


Q ss_pred             CCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeec-----CCC
Q 024097          229 NVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEV-----QDA  272 (272)
Q Consensus       229 d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-----~~G  272 (272)
                      |+.|.|.+.++...+.....+++|++++..+++++++++|+     +||
T Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG  215 (223)
T 3duw_A          167 NVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDG  215 (223)
T ss_dssp             SCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEE
T ss_pred             CCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCe
Confidence            99999999988877888899999999999999999999999     887

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.98  E-value=1.7e-30  Score=222.18  Aligned_cols=198  Identities=29%  Similarity=0.505  Sum_probs=176.6

Q ss_pred             hhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEE
Q 024097           70 PPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV  148 (272)
Q Consensus        70 ~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~  148 (272)
                      +.+.+|+.+.. .+++.+.++++.+.....+.+.+++..++++..++...++++|||||||+|+.+.++++.++++++|+
T Consensus        13 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~   92 (248)
T 3tfw_A           13 SAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLL   92 (248)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEE
Confidence            45778988764 45788888888877666666778999999999999999999999999999999999999987678999


Q ss_pred             EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       149 ~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++|+++++++.|+++++..++.++++++.+|+.+.++.+   .+.++||+||+++....+..+++.+.++|||||+|+++
T Consensus        93 ~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~---~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A           93 TLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC---CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc---CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence            999999999999999999999888999999998876643   11348999999999889999999999999999999999


Q ss_pred             CCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEe-ecC
Q 024097          229 NVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMK-EVQ  270 (272)
Q Consensus       229 d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-p~~  270 (272)
                      |+.|.|.+.++...+..+..+++|++.+..+|+++++++ |+|
T Consensus       170 ~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g  212 (248)
T 3tfw_A          170 NVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVG  212 (248)
T ss_dssp             CCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECS
T ss_pred             CCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCC
Confidence            999999999888788888999999999999999999988 776

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.97  E-value=1.3e-30  Score=220.79  Aligned_cols=201  Identities=21%  Similarity=0.352  Sum_probs=171.4

Q ss_pred             ccCCCChhHHHHHHhccC-ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097           64 QVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (272)
Q Consensus        64 ~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~  142 (272)
                      ....+++.|.+|+.+... +++.+.++++......  .+.+.+..++++..++...++.+|||||||+|+++.++++..+
T Consensus        17 ~~~~~~~~l~~yl~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           17 RGSHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             ----CHHHHHHHHHHHHGGGCCGGGGHHHHHHHTT--CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC
Confidence            345577899999998743 4566667766665442  2356899999999999999999999999999999999999665


Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH-HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCC
Q 024097          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (272)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkp  221 (272)
                       +++|+++|+++++++.|+++++..++.++++++.+|+.+.++ .+     .++||+||++.....+..+++.+.++|+|
T Consensus        95 -~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~~~~~~~~l~~~~~~Lkp  168 (232)
T 3ntv_A           95 -DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-----DKVYDMIFIDAAKAQSKKFFEIYTPLLKH  168 (232)
T ss_dssp             -TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-----TSCEEEEEEETTSSSHHHHHHHHGGGEEE
T ss_pred             -CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-----cCCccEEEEcCcHHHHHHHHHHHHHhcCC
Confidence             789999999999999999999999988789999999988776 54     47999999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCcccCCcC-C----CHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          222 GGIIVIDNVLWHGKVADQMV-N----DAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       222 gG~lvi~d~~~~g~~~~~~~-~----~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ||+|+++|++|.|.+.++.. .    +....++++|++.+.++++++++++|+|||
T Consensus       169 gG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG  224 (232)
T 3ntv_A          169 QGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDG  224 (232)
T ss_dssp             EEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTC
T ss_pred             CeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCc
Confidence            99999999999999887654 2    223568999999999999999999999998

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.97  E-value=1.6e-29  Score=214.78  Aligned_cols=207  Identities=41%  Similarity=0.728  Sum_probs=181.5

Q ss_pred             CCCChhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC
Q 024097           66 ISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES  144 (272)
Q Consensus        66 ~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~  144 (272)
                      ....+.+++|+.+.. .+++.+.++++.+.....+.+.+.+..++++..++...++.+|||||||+|+.+..+++.++++
T Consensus         6 ~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~   85 (239)
T 2hnk_A            6 ISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPED   85 (239)
T ss_dssp             CCCCHHHHHHHHHTTCCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTT
T ss_pred             ccchHHHHHHHHHccCCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCC
Confidence            456788999999874 5678999999888777667778999999999999998899999999999999999999998767


Q ss_pred             cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC---------CCC--CceEEEEEcCCccchHHHHH
Q 024097          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN---------GEA--SSYDFAFVDAEKRMYQEYFE  213 (272)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---------~~~--~~fDlV~~d~~~~~~~~~l~  213 (272)
                      ++|+++|+++.+++.|+++++..+..++++++.+|+.+.++.+...         ...  ++||+||++.....+..+++
T Consensus        86 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~  165 (239)
T 2hnk_A           86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYP  165 (239)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHH
Confidence            8999999999999999999999888778999999998866644221         011  68999999998888889999


Q ss_pred             HHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          214 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       214 ~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      .+.++|+|||+++++++.|.|.+.++...+.....+++|++.+..++++.++++|++||
T Consensus       166 ~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g  224 (239)
T 2hnk_A          166 LILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADG  224 (239)
T ss_dssp             HHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             HHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCc
Confidence            99999999999999999999999887777778889999999999999999999999998

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=4.6e-29  Score=207.68  Aligned_cols=196  Identities=18%  Similarity=0.243  Sum_probs=163.9

Q ss_pred             CChhHHHHHHhcc-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcE
Q 024097           68 VTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (272)
Q Consensus        68 ~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~  146 (272)
                      ..+.+++|+.++. .+++.+.++++.+....  .+.+.+....++..++...++++|||||||+|+.+.++++.++++++
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   83 (210)
T 3c3p_A            6 VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSR   83 (210)
T ss_dssp             BCHHHHHHHHHTSCSCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCE
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            4678999999875 45788888888876542  34688999999999988888999999999999999999998876789


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+++|+++++++.|+++++..++.++++++++|+.+.++.+     .+ ||+||++.....+..+++.+.++|+|||+++
T Consensus        84 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv  157 (210)
T 3c3p_A           84 VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----RD-IDILFMDCDVFNGADVLERMNRCLAKNALLI  157 (210)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEE
Confidence            99999999999999999999988778999999998765533     35 9999999888889999999999999999999


Q ss_pred             EeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          227 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       227 i~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ++|+.|.|.+.++ ..+.....+++|++.+..++++.++++|+++|
T Consensus       158 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G  202 (210)
T 3c3p_A          158 AVNALRRGSVAES-HEDPETAALREFNHHLSRRRDFFTTIVPVGNG  202 (210)
T ss_dssp             EESSSSCC-------------CCCHHHHHHTTCTTEEEEEECSTTC
T ss_pred             EECccccCcccCc-ccchHHHHHHHHHHHHhhCCCeEEEEEecCCc
Confidence            9999999988755 44455667999999999999999999999998

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=1e-26  Score=196.39  Aligned_cols=199  Identities=26%  Similarity=0.434  Sum_probs=156.6

Q ss_pred             CChhHHHHHHhccC-ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcE
Q 024097           68 VTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (272)
Q Consensus        68 ~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~  146 (272)
                      .++.+++|+.+... +++.+.++.+.+...  ..+.+.+....++..++...++.+|||||||+|..+..+++.++ +++
T Consensus         4 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~   80 (233)
T 2gpy_A            4 IEERLKHYLEKQIPARDQYIEQMEREAHEQ--QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EAT   80 (233)
T ss_dssp             -CHHHHHHHHTTCCCCCHHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCE
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCE
Confidence            56789999999754 578888888776544  23467899999999999988999999999999999999999986 789


Q ss_pred             EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+++|+++.+++.|+++++..++.++++++.+|+.+.++...   ..++||+||++.....+..+++.+.++|+|||+++
T Consensus        81 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv  157 (233)
T 2gpy_A           81 IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE---LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLIL  157 (233)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT---TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc---cCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            999999999999999999999987789999999988655431   13689999999888888999999999999999999


Q ss_pred             EeCCCCCCcccCCcC----CCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          227 IDNVLWHGKVADQMV----NDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       227 i~d~~~~g~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ++|+.|.|.+.++..    .+.....+++|++++..++++.+.++|++||
T Consensus       158 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG  207 (233)
T 2gpy_A          158 SDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDG  207 (233)
T ss_dssp             EETTTC-------------------------CTTTTCTTEEEEEECSTTC
T ss_pred             EEcCCcCCccCCccccccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCe
Confidence            999999998765431    1122457889999999999999999999998

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.95  E-value=1.9e-26  Score=193.48  Aligned_cols=184  Identities=21%  Similarity=0.368  Sum_probs=152.3

Q ss_pred             ChhHHHHHHhccCC--h-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc
Q 024097           69 TPPLYDYILRNVRE--P-EILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (272)
Q Consensus        69 ~~~l~~y~~~~~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~  145 (272)
                      .+++++|+.++...  + ..+..+.+..... ...+.+++..++++..++...++++|||||||+|.+++++++.+++++
T Consensus         6 ~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (221)
T 3u81_A            6 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQK-EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   84 (221)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-TCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhc-CcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCC
Confidence            45789999987542  2 4566666655433 344689999999999999999999999999999999999999887678


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHH---HHHHHHccCCCC
Q 024097          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE---YFELLLQLIRVG  222 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~---~l~~~~~lLkpg  222 (272)
                      +|+++|+++.+++.|+++++..++.++++++++|+.+.++.+....+.++||+||+++....+..   +++.+ ++|+||
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A           85 RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred             EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence            99999999999999999999999988899999999886655421111268999999998777654   45555 999999


Q ss_pred             cEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEee
Q 024097          223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKE  268 (272)
Q Consensus       223 G~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp  268 (272)
                      |+|+++|+.+.|.              ++|++++.++++|.+.++|
T Consensus       164 G~lv~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          164 TVLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             CEEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEE
T ss_pred             eEEEEeCCCCcch--------------HHHHHHHhhCCCceEEEcc
Confidence            9999999998762              5799999999999999999

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.80  E-value=6.4e-19  Score=144.91  Aligned_cols=153  Identities=16%  Similarity=0.104  Sum_probs=118.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEE
Q 024097           97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVK  174 (272)
Q Consensus        97 ~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~  174 (272)
                      ..+.+.+++.++++|...  ..++++||||||  |++|+++|+. + +++|+++|.+++..+.|+++++++|+  .++++
T Consensus        10 ~~P~~~v~~~~~~~L~~~--l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~   83 (202)
T 3cvo_A           10 MRPELTMPPAEAEALRMA--YEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVN   83 (202)
T ss_dssp             CCCCCCSCHHHHHHHHHH--HHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEE
T ss_pred             CCCCccCCHHHHHHHHHH--hhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceE
Confidence            345568999999999884  457889999998  6899999984 3 68999999999999999999999998  78999


Q ss_pred             EEEcChhHH--------------HHHHH----hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          175 IKHGLAADS--------------LKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       175 ~~~~d~~~~--------------~~~~~----~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      ++.+|+.+.              ++...    ...+.++||+||+|+.+..  .++..+.++|+|||+|++||+.+.+..
T Consensus        84 ~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~y  161 (202)
T 3cvo_A           84 IVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRWQ  161 (202)
T ss_dssp             EEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSSG
T ss_pred             EEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcch
Confidence            999996543              22211    1112378999999998653  677778899999999999998765543


Q ss_pred             cCCcCCCHhhHHHHHHHHHhhhCCCeEEEEe
Q 024097          237 ADQMVNDAKTISIRNFNKNLMEDERVSISMK  267 (272)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (272)
                      .          .+.+|.+.+...++...-.+
T Consensus       162 ~----------~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          162 H----------QVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             G----------GGHHHHCCCEEETTEEEEEE
T ss_pred             H----------HHHHHHhHHhhcCceEEEEe
Confidence            2          15667776666666654443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.72  E-value=4.8e-17  Score=135.38  Aligned_cols=164  Identities=13%  Similarity=0.087  Sum_probs=120.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC----CEEEEE
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKH  177 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~----~v~~~~  177 (272)
                      .+.+...+++..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...++.+    +++++.
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ   90 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred             cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence            34566667777777777889999999999999999998654 5799999999999999999988777654    799999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCcccC---------CcC-C
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD---------QMV-N  242 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~---------~~~-~  242 (272)
                      +|+......      .++||+|++.....     ....+++++.++|||||++++......+....         +.. .
T Consensus        91 ~d~~~~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (219)
T 3jwg_A           91 SSLVYRDKR------FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRF  164 (219)
T ss_dssp             CCSSSCCGG------GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTT
T ss_pred             Ccccccccc------cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCcee
Confidence            998442111      36899999876522     23578999999999999887743322111110         000 0


Q ss_pred             CHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          243 DAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ......++++.+.+.+..+|++...++|++
T Consensus       165 ~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          165 EWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             SBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             eecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            012345777777787888999999988874

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.72  E-value=3.7e-17  Score=135.97  Aligned_cols=164  Identities=14%  Similarity=0.157  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC----CEEEEE
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKH  177 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~----~v~~~~  177 (272)
                      .+.+...+.+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++..    +++++.
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ   90 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence            44566667777777777889999999999999999998654 5799999999999999999988777654    799999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCC-----CCCcc----cCCcC-C
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL-----WHGKV----ADQMV-N  242 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~-----~~g~~----~~~~~-~  242 (272)
                      +|+.....      ..++||+|++.....     ....+++++.++|||||++++....     |.+..    ..... .
T Consensus        91 ~d~~~~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (217)
T 3jwh_A           91 GALTYQDK------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRF  164 (217)
T ss_dssp             CCTTSCCG------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCS
T ss_pred             CCcccccc------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccccccccccccc
Confidence            99843211      136899999876532     3468899999999999988875432     11100    00000 0


Q ss_pred             CHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          243 DAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       243 ~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ......++++.+.+.+..+|++...++|+.
T Consensus       165 ~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          165 EWTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             CBCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             ccCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            112345777778888888999999988873

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.71  E-value=5.5e-17  Score=140.72  Aligned_cols=107  Identities=15%  Similarity=0.099  Sum_probs=92.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ++...++.+|||||||+|..+..++...+ +++|+++|+++++++.|++++++.++ ++++++++|+.+. +       +
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------d  186 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------G  186 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------G
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------C
Confidence            55667899999999999876644433444 68999999999999999999999998 7899999999874 2       3


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++||+||+.+...+...+++++.+.|||||+|++.+.
T Consensus       187 ~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          187 LEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            7899999988877888999999999999999999874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.71  E-value=1.1e-16  Score=132.01  Aligned_cols=121  Identities=16%  Similarity=0.278  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ........+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++++++.|+++++..++ ++++++.+|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            4455545555555667788999999999999999999865 68999999999999999999999888 579999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .++.      .++||+|+++........+++.+.++|+|||.+++....
T Consensus       102 ~~~~------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5432      367999999987778889999999999999999996543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.71  E-value=4.6e-17  Score=143.36  Aligned_cols=140  Identities=20%  Similarity=0.295  Sum_probs=108.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----KN  180 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----TT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc-----CC
Confidence            4678999999999999999998644 679999999999999999988653  33 458999999998876542     57


Q ss_pred             ceEEEEEcCCcc------ch-HHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEe
Q 024097          195 SYDFAFVDAEKR------MY-QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMK  267 (272)
Q Consensus       195 ~fDlV~~d~~~~------~~-~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  267 (272)
                      +||+|++|....      .+ ..+++.+.++|+|||+++++.    |..   .........+.++++.+..+.++..+.+
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~----~~~---~~~~~~~~~~~~~l~~vF~~v~~~~~~i  253 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG----ESV---WLHLPLIAHLVAFNRKIFPAVTYAQSIV  253 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC----CCT---TTCHHHHHHHHHHHHHHCSEEEEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC----CCc---ccCHHHHHHHHHHHHHHCCcceEEEEEe
Confidence            899999987421      12 688999999999999999985    211   1123446678888888888888888889


Q ss_pred             ecC
Q 024097          268 EVQ  270 (272)
Q Consensus       268 p~~  270 (272)
                      |+.
T Consensus       254 P~~  256 (314)
T 2b2c_A          254 STY  256 (314)
T ss_dssp             TTS
T ss_pred             cCc
Confidence            985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.71  E-value=2e-16  Score=130.84  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++++++.|+++++..++.++++++.+|+.
T Consensus        38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~  114 (204)
T 3njr_A           38 ITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAP  114 (204)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             CCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchh
Confidence            344555555555566667889999999999999999986   57999999999999999999999998768999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.++.      ..+||+||++... ... +++.+.++|+|||.+++...
T Consensus       115 ~~~~~------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          115 AALAD------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             GGGTT------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             hhccc------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEec
Confidence            75432      3579999998744 344 89999999999999999754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.70  E-value=4.8e-16  Score=126.60  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++++++.|+++++..++ ++++++++|+.+....+    ..++||
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~----~~~~fD  115 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAG----TTSPVD  115 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHC----CSSCCS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhc----cCCCcc
Confidence            57789999999999999988774 2 46899999999999999999999988 57999999998876543    147899


Q ss_pred             EEEEcCCcc----chHHHHHHHHc--cCCCCcEEEEeCCCC
Q 024097          198 FAFVDAEKR----MYQEYFELLLQ--LIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~~~----~~~~~l~~~~~--lLkpgG~lvi~d~~~  232 (272)
                      +|+++.+..    .....++.+.+  +|+|||++++.....
T Consensus       116 ~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          116 LVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             EEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            999987633    36778888888  999999999975443

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.70  E-value=3.1e-17  Score=138.84  Aligned_cols=116  Identities=16%  Similarity=0.296  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      +....++..++...++.+|||||||+|+++..+++.   +.++++|+++|+++++++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            888888888888888899999999999999999987   444789999999999998886      22357999999997


Q ss_pred             HH--HHHHHhCCCCCceEEEEEcCCccchHHHHHHHHc-cCCCCcEEEEeCC
Q 024097          182 DS--LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~--~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~-lLkpgG~lvi~d~  230 (272)
                      +.  ++.+    ...+||+|+++.....+..++.++.+ +|||||+|+++++
T Consensus       141 ~~~~l~~~----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            64  2322    12479999999887778889999997 9999999999986

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=1.1e-16  Score=137.35  Aligned_cols=119  Identities=13%  Similarity=0.232  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          106 DQAQLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       106 ~~~~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ...+++..++.  ..++.+|||||||+|..+..+++.++ ++.+|+|+|+|+.|++.|+++++..+...+++++++|+.+
T Consensus        55 ~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           55 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            33344444444  34678999999999999999999874 4679999999999999999999988888889999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..        .++||+|++....     .+...+++++++.|||||++++.+...
T Consensus       135 ~~--------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          135 IA--------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             CC--------CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             cc--------ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence            31        3679999987542     234568999999999999999976543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.70  E-value=6.7e-17  Score=141.77  Aligned_cols=139  Identities=17%  Similarity=0.284  Sum_probs=110.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hCC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++..  .++ ..+++++.+|+.+.++..     .+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-----~~  167 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----QD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----SS
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-----CC
Confidence            4678999999999999999998643 67999999999999999999875  344 468999999998866542     47


Q ss_pred             ceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeC-CCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEE
Q 024097          195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN-VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  266 (272)
Q Consensus       195 ~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (272)
                      +||+||+|....       ....+++.+.++|+|||++++++ ..|..        ......++++++.+..+.++..+.
T Consensus       168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--------~~~~~~~~~~l~~~f~~v~~~~~~  239 (304)
T 2o07_A          168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--------LDLIKEMRQFCQSLFPVVAYAYCT  239 (304)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--------HHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred             CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc--------hHHHHHHHHHHHHhCCCceeEEEE
Confidence            899999987632       23568999999999999999986 33332        234567888999998888888888


Q ss_pred             eecC
Q 024097          267 KEVQ  270 (272)
Q Consensus       267 lp~~  270 (272)
                      +|+.
T Consensus       240 vP~~  243 (304)
T 2o07_A          240 IPTY  243 (304)
T ss_dssp             CTTS
T ss_pred             eccc
Confidence            8874

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.69  E-value=8.7e-17  Score=138.89  Aligned_cols=152  Identities=12%  Similarity=0.195  Sum_probs=118.6

Q ss_pred             CCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChh------------------
Q 024097          102 QVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDAR------------------  155 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~------------------  155 (272)
                      .++.....+|..++..    ..+.+|||+|++.|++++++++.++    ++.+|+++|..+.                  
T Consensus        85 mv~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~  164 (282)
T 2wk1_A           85 MIGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALH  164 (282)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGG
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccc
Confidence            3556777777777664    4588999999999999999988763    3678999996532                  


Q ss_pred             --------HHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-cchHHHHHHHHccCCCCcEE
Q 024097          156 --------SLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLIRVGGII  225 (272)
Q Consensus       156 --------~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-~~~~~~l~~~~~lLkpgG~l  225 (272)
                              .++.+++++++.|+. ++++++.|++.+.++.+    ..++||+||+|+++ ..+..+++.+.++|+|||+|
T Consensus       165 ~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~----~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiI  240 (282)
T 2wk1_A          165 RRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTA----PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYV  240 (282)
T ss_dssp             GGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTC----CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhC----CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEE
Confidence                    467789999999994 89999999999887654    13689999999986 44678999999999999999


Q ss_pred             EEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecC
Q 024097          226 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQ  270 (272)
Q Consensus       226 vi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  270 (272)
                      ++||+.|.         ...+.|+++|++..    ++...++++.
T Consensus       241 v~DD~~~~---------~G~~~Av~Ef~~~~----~i~~~i~~~~  272 (282)
T 2wk1_A          241 IVDDYMMC---------PPCKDAVDEYRAKF----DIADELITID  272 (282)
T ss_dssp             EESSCTTC---------HHHHHHHHHHHHHT----TCCSCCEECS
T ss_pred             EEcCCCCC---------HHHHHHHHHHHHhc----CCceEEEEec
Confidence            99998641         23467888887664    2444455544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.69  E-value=1.5e-16  Score=140.21  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=107.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hC-C-CCCEEEEEcChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AG-V-SHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .+ + ..+++++.+|+.+.++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            34678999999999999999998644 67999999999999999998865  22 2 458999999998876543     


Q ss_pred             CCceEEEEEcCCccc----------hHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCe
Q 024097          193 ASSYDFAFVDAEKRM----------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV  262 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~----------~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (272)
                      .++||+|++|.....          ...+++.+.++|+|||++++...    ....  ........+.+.++.+..+..+
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~~~~--~~~~~~~~~~~~l~~~F~~v~~  222 (314)
T 1uir_A          149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG----MILL--THHRVHPVVHRTVREAFRYVRS  222 (314)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE----EECC-----CHHHHHHHHHHTTCSEEEE
T ss_pred             CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc----Cccc--cCHHHHHHHHHHHHHHCCceEE
Confidence            578999999876433          47899999999999999998621    1110  1122344566666666666666


Q ss_pred             EEEEeecCCC
Q 024097          263 SISMKEVQDA  272 (272)
Q Consensus       263 ~~~~lp~~~G  272 (272)
                      ..+.+|+++|
T Consensus       223 ~~~~vP~~~g  232 (314)
T 1uir_A          223 YKNHIPGFFL  232 (314)
T ss_dssp             EEEEEGGGTE
T ss_pred             EEEecCCCCC
Confidence            6777888754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.69  E-value=1.8e-16  Score=127.27  Aligned_cols=117  Identities=16%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ....+...+...++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.|+++++..+..+++ ++.+|+.+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence            334444444556778999999999999999999875 789999999999999999999988887678 888998764442


Q ss_pred             HHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .     .++||+|++...... ..+++.+.++|+|||.+++....
T Consensus        91 ~-----~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 V-----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C-----CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             c-----CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            1     278999999876554 67899999999999999987543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=3.7e-16  Score=132.88  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=102.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+.....+...+...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++++..++.++++++++|+.
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   96 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence            4556666666666666788899999999999999999886  46999999999999999999999888778999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +...       +++||+|++...   ..+...+++++.++|||||.+++.+..|..
T Consensus        97 ~~~~-------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~  145 (256)
T 1nkv_A           97 GYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  145 (256)
T ss_dssp             TCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             hCCc-------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccC
Confidence            6421       378999998654   235678899999999999999998766543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.68  E-value=2.4e-16  Score=126.82  Aligned_cols=108  Identities=12%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.++++++.+|+.+.++..     .++|
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~f  101 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-----TGRF  101 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-----CSCE
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh-----cCCC
Confidence            456789999999999999999986 3 56999999999999999999998888778999999998866543     4679


Q ss_pred             EEEEEcCCc--cchHHHHHHHH--ccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAEK--RMYQEYFELLL--QLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~~--~~~~~~l~~~~--~lLkpgG~lvi~d~~  231 (272)
                      |+|+++.+.  ......++.+.  ++|+|||++++....
T Consensus       102 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          102 DLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            999998763  34566777776  999999999997544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.68  E-value=3.6e-16  Score=135.67  Aligned_cols=139  Identities=15%  Similarity=0.161  Sum_probs=106.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC--------CCCEEEEEcChhHHHHHH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV--------SHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~~~~  187 (272)
                      .++++|||||||+|..+..+++. + ..+|+++|+++.+++.|++++ ..  ++        ..+++++.+|+.+.++. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence            46789999999999999999987 4 679999999999999999988 43  32        45899999999876553 


Q ss_pred             HhCCCCCceEEEEEcCCcc-----c--hHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCC
Q 024097          188 ILNGEASSYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDE  260 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~-----~--~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~  260 (272)
                           .++||+|++|....     .  ...+++.+.++|+|||+++++..    .   +.........+.+.++.+..+.
T Consensus       150 -----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~----~---~~~~~~~~~~~~~~l~~~f~~v  217 (281)
T 1mjf_A          150 -----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG----S---VYLFTDELISAYKEMKKVFDRV  217 (281)
T ss_dssp             -----CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE----E---TTTSHHHHHHHHHHHHHHCSEE
T ss_pred             -----cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC----C---cccCHHHHHHHHHHHHHHCCce
Confidence                 36899999987521     1  37789999999999999999731    1   1112234455666676666666


Q ss_pred             CeEEEEeecCCC
Q 024097          261 RVSISMKEVQDA  272 (272)
Q Consensus       261 ~~~~~~lp~~~G  272 (272)
                      .+..+.+|.++|
T Consensus       218 ~~~~~~vP~~~g  229 (281)
T 1mjf_A          218 YYYSFPVIGYAS  229 (281)
T ss_dssp             EEEEECCTTSSS
T ss_pred             EEEEEecCCCCc
Confidence            666777888755

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.67  E-value=6e-17  Score=136.98  Aligned_cols=111  Identities=18%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|.++.++++..+  .++++||+++++++.|+++.+..+  .+++++.+|+.+....+    .+++||
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~----~~~~FD  130 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccc----cccCCc
Confidence            3678999999999999999988644  589999999999999999887655  36899999997765433    257899


Q ss_pred             EEEEcCC--------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          198 FAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       198 lV~~d~~--------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      .|+.|..        ..+...+++++.++|||||+|++.+....+..
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~  177 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL  177 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhh
Confidence            9998864        22356789999999999999999876655543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=2.9e-16  Score=133.58  Aligned_cols=118  Identities=14%  Similarity=0.240  Sum_probs=97.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .++..+....++.+|||||||+|..+..+++..+  ++|+++|+++.+++.+++++...++.++++++++|+.+.. .  
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~--  110 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-F--  110 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-S--
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-C--
Confidence            3333333455678999999999999999999875  4999999999999999999999999888999999996532 1  


Q ss_pred             hCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          189 LNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                         .+++||+|++.....  +...+++++.++|+|||++++.+..|..
T Consensus       111 ---~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          111 ---QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFT  155 (257)
T ss_dssp             ---CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             ---CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence               147999999876522  4778999999999999999998876554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.66  E-value=4.2e-16  Score=133.69  Aligned_cols=110  Identities=12%  Similarity=0.212  Sum_probs=93.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++. + .++|+++|+++.+++.|+++++..++.++++++.+|+.+...      ..++|
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~f  115 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF------RNEEL  115 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC------CCCCE
Confidence            456789999999999999999987 3 679999999999999999999999998889999999966321      14789


Q ss_pred             EEEEEcCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          197 DFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      |+|++.....  +...+++.+.++|||||++++.+..|..
T Consensus       116 D~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          116 DLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFT  155 (267)
T ss_dssp             EEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESS
T ss_pred             EEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecC
Confidence            9999876522  5678899999999999999998876543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.65  E-value=2.3e-15  Score=121.72  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...++.++++++++|+.+..+.+..  +.++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE--EKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH--TTCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh--cCCCCC
Confidence            46789999999999999998873 3 4699999999999999999999988877899999999886554321  136899


Q ss_pred             EEEEcCC--ccchHHHHHHH--HccCCCCcEEEEeCCC
Q 024097          198 FAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~--~~~~~~~l~~~--~~lLkpgG~lvi~d~~  231 (272)
                      +|+++.+  .......++.+  .++|+|||++++....
T Consensus       119 ~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            9999876  33456677777  7899999999986443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.65  E-value=1.1e-15  Score=125.94  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCc-
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS-  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~-  195 (272)
                      .++.+|||+|||+|..++.++...  ..+|+++|+|+++++.|+++++..++. ++++++.+|+.+.++.+    ..++ 
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~  125 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPH  125 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCC
T ss_pred             cCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh----ccCCC
Confidence            467899999999999999877652  359999999999999999999998874 57999999997754321    1367 


Q ss_pred             eEEEEEcCC--ccchHHHHHHH--HccCCCCcEEEEeCCCCC
Q 024097          196 YDFAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       196 fDlV~~d~~--~~~~~~~l~~~--~~lLkpgG~lvi~d~~~~  233 (272)
                      ||+|+++.+  .......++.+  .++|+|||++++......
T Consensus       126 fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          126 FDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999999877  34466778888  678999999998655433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.65  E-value=1.3e-15  Score=129.67  Aligned_cols=119  Identities=22%  Similarity=0.266  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.|+++++..++.++++++.+|+.
T Consensus        76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  155 (255)
T 3mb5_A           76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY  155 (255)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred             cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh
Confidence            45677777777778888889999999999999999999855578999999999999999999999999888999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +.++       .++||+|+++.+  ....+++.+.++|+|||.+++..
T Consensus       156 ~~~~-------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          156 EGIE-------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             GCCC-------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hccC-------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            6422       468999999765  33457999999999999999853

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.65  E-value=3.1e-15  Score=120.95  Aligned_cols=120  Identities=20%  Similarity=0.305  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .........+...+...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++++...+..++++++.+|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3456666666666667788899999999999999999864   6999999999999999999998888668999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.++.      .++||+|+++........+++.+.++|+|||.+++...
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Hhccc------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            74332      25899999998777788999999999999999998643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.65  E-value=6.9e-16  Score=126.24  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++++..++.++++++++|+.+.....     +++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f   94 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-----DCPV   94 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-----CSCE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-----cCCc
Confidence            35678999999999999999999875567999999999999999999999888678999999987653222     4789


Q ss_pred             EEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          197 DFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |+|+++.+.            .....+++.+.++|+|||++++..
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            999987532            134568999999999999999864

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.64  E-value=5.4e-16  Score=125.61  Aligned_cols=132  Identities=13%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++.   +++|+++|+++++++.|+++++..++ +++++++++..+.....     +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~-----~~~fD   91 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYV-----REPIR   91 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTC-----CSCEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhc-----cCCcC
Confidence            36789999999999999999986   57999999999999999999999888 57999997775532211     47899


Q ss_pred             EEEEcCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          198 FAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       198 lV~~d~~------------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                      +|+++..            .......++++.++|||||.+++.  .|.+...    .......+.++.+.+.. .++...
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~----~~~~~~~~~~~~~~l~~-~~~~~~  164 (185)
T 3mti_A           92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM--IYYGHDG----GDMEKDAVLEYVIGLDQ-RVFTAM  164 (185)
T ss_dssp             EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE--EC----------CHHHHHHHHHHHHSCT-TTEEEE
T ss_pred             EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE--EeCCCCC----CHHHHHHHHHHHHhCCC-ceEEEE
Confidence            9998721            123456789999999999999985  3333221    12233455666655532 234443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.63  E-value=2.7e-15  Score=131.04  Aligned_cols=116  Identities=8%  Similarity=0.083  Sum_probs=96.2

Q ss_pred             HHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          107 QAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       107 ~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ....+..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.|++++...++.++++++.+|+.+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence            3334444443   34677999999999999999999865  799999999999999999999999988899999999764


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                               +++||+|++.....            .+..+++++.++|||||.+++.++...
T Consensus       135 ---------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ---------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ---------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ---------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                     37899999875432            347899999999999999999877654

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=2.2e-15  Score=124.27  Aligned_cols=106  Identities=14%  Similarity=0.169  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..++.+++..  ..+|+++|+++.+++.|+++++..++ ++++++++|+.+.++..     .++||
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~-----~~~fD  124 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK-----GTPHN  124 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC-----CCCEE
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc-----CCCCC
Confidence            367899999999999999877653  25999999999999999999999887 57999999998755421     46899


Q ss_pred             EEEEcCC--ccchHHHHHHHHc--cCCCCcEEEEeCCC
Q 024097          198 FAFVDAE--KRMYQEYFELLLQ--LIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~--~~~~~~~l~~~~~--lLkpgG~lvi~d~~  231 (272)
                      +|+++.+  .......++.+.+  +|+|||++++....
T Consensus       125 ~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          125 IVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             EEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             EEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            9999876  3345667777754  69999999986443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.63  E-value=2.4e-15  Score=125.71  Aligned_cols=105  Identities=19%  Similarity=0.243  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+ +.+|+|+|+++.+++.|+++++..++. +++++.+|+.+.++...   .+++||.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~---~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMI---PDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHS---CTTCEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHc---CCCChhe
Confidence            567999999999999999999876 689999999999999999999988886 49999999988765422   2579999


Q ss_pred             EEEcCC---c--cc------hHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAE---K--RM------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~---~--~~------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++..+   .  ..      ...+++.+.++|||||++++.
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            998632   1  11      135899999999999999884

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=2.2e-15  Score=127.42  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..++...+ +.+|+++|+++++++.|+++++..++. +++++++|+.+.....   ...++||
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD  143 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK---DVRESYD  143 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT---TTTTCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc---cccCCcc
Confidence            3678999999999999999998655 689999999999999999999998886 4999999997642100   0036899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|++.. ......+++.+.++|+|||++++.
T Consensus       144 ~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          144 IVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            999987 456788999999999999999885

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=1.7e-15  Score=129.59  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          108 AQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       108 ~~~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      +.++..++... ++.+|||+|||+|..++.+++..+  .+|+++|+++.+++.|++++...++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            45666666666 788999999999999999998754  499999999999999999999999988899999999876432


Q ss_pred             HHhCCCCCceEEEEEcCCc-----------------------cchHHHHHHHHccCCCCcEEEE
Q 024097          187 LILNGEASSYDFAFVDAEK-----------------------RMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~-----------------------~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +    ..++||+|+++.+.                       .....+++.+.++|+|||.+++
T Consensus       115 ~----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2    14789999997542                       1235688999999999999998

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=7.3e-15  Score=116.91  Aligned_cols=106  Identities=19%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||+|||+|..+..+++..+   +|+++|+++.+++.|+++++..++  +++++++|+.+.++.....  .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~--~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ--GERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc--CCceEE
Confidence            678999999999999999998643   599999999999999999998887  6999999998865544221  248999


Q ss_pred             EEEcCCc-cchHHHHHHHH--ccCCCCcEEEEeCCC
Q 024097          199 AFVDAEK-RMYQEYFELLL--QLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~-~~~~~~l~~~~--~lLkpgG~lvi~d~~  231 (272)
                      |+++.+. ......++.+.  ++|+|||++++....
T Consensus       114 i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            9998653 45556777777  999999999986443

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.61  E-value=2.8e-15  Score=123.91  Aligned_cols=105  Identities=19%  Similarity=0.241  Sum_probs=89.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||||||+|..+..+++. + +.+|+++|+++.+++.|+++++..++.++++++++|+.+..  +    .+++||+|+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----~~~~~D~v~  116 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--I----EDNYADLIV  116 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--S----CTTCEEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--C----CcccccEEE
Confidence            39999999999999999997 3 67999999999999999999999998878999999997632  1    147899999


Q ss_pred             EcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       201 ~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +...   ..+...+++++.++|+|||.+++.+....
T Consensus       117 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A          117 SRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             ECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence            8765   34567899999999999999999765543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.61  E-value=3.3e-15  Score=129.21  Aligned_cols=106  Identities=15%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~  147 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----EN  147 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----CS
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            3678999999999999999997643 579999999999999999988652  33 458999999998876542     47


Q ss_pred             ceEEEEEcCCccc-------hHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~-------~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||+|++|.....       ..++++.+.++|+|||++++..
T Consensus       148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8999999875321       2679999999999999999973

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.61  E-value=7.4e-15  Score=122.14  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=86.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+ +.+|+|+|+++.+++.|++++...++. +++++++|+.+....+    ..++||.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~----~~~~~d~  111 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF----EPGEVKR  111 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC----CTTSCCE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc----CcCCcCE
Confidence            567999999999999999999876 789999999999999999999988875 5999999998743222    2468999


Q ss_pred             EEEcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++..+..           ....+++.+.++|+|||.|++.
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            98864311           1467899999999999999985

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.61  E-value=2.1e-15  Score=129.30  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH---hCCCCCEEEEEcChhHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~  184 (272)
                      +-+|..++...++.+|||+|||+|..++.+++..+ ..+|+++|+++++++.|++++..   +++.++++++++|+.+..
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            34455555555678999999999999999999876 68999999999999999999988   788778999999998764


Q ss_pred             HHHHhC-CCCCceEEEEEcCCc---------------------cchHHHHHHHHccCCCCcEEEE
Q 024097          185 KALILN-GEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       185 ~~~~~~-~~~~~fDlV~~d~~~---------------------~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +..... ...++||+|+++.+.                     .....+++.+.++|+|||.+++
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            422111 124789999998441                     1256789999999999999987

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.60  E-value=3.9e-15  Score=126.89  Aligned_cols=104  Identities=24%  Similarity=0.342  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..++.++...+ +.+|+++|+++++++.|+++++..++.+ ++++++|+.+.....   ...++||+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~---~~~~~fD~  154 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA---GHREAYAR  154 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST---TTTTCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc---ccCCCceE
Confidence            568999999999999999999876 7899999999999999999999999875 999999997653210   01378999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++.+. .....+++.+.++|+|||.+++-
T Consensus       155 I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          155 AVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             EEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            999764 45678899999999999998863

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=4.3e-14  Score=113.43  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+.....+...+...++.+|||+|||+|..+..+++  + ..+++++|+++.+++.++++++..++. +++++.+|+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~   93 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAE   93 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHH
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCcc
Confidence            34455566666666666788999999999999999998  3 679999999999999999999988874 6999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.++       .++||+|+++.. .....+++.+.++  |||.+++...
T Consensus        94 ~~~~-------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           94 DVLD-------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HHGG-------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             cccc-------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            7322       368999999887 7788899999888  9999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.60  E-value=5.8e-15  Score=122.57  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|++++...++ .+++++++|+.+....+    ..++||+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~----~~~~~D~  114 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF----EDGEIDR  114 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS----CTTCCSE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc----CCCCCCE
Confidence            567999999999999999999886 78999999999999999999998888 47999999997632111    1468999


Q ss_pred             EEEcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+++.+..           ....+++.+.++|+|||.+++.
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            99886532           2367999999999999999984

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.60  E-value=1.8e-14  Score=124.41  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..++. +++++.+|+.+....+
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYL  150 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhh
Confidence            344455556667889999999999999999998764589999999999999999999999886 6999999998764432


Q ss_pred             HhCCCCCceEEEEEcCCc---------------------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          188 ILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~---------------------~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..  ..++||+|++|.+.                     .....+++.+.++|||||.+++.....
T Consensus       151 ~~--~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          151 LK--NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HH--TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hh--ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            11  13689999998542                     234678999999999999999976544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.60  E-value=1.9e-14  Score=132.44  Aligned_cols=122  Identities=17%  Similarity=0.252  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      .....++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+.  ++++++|+.+..
T Consensus        87 d~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~  164 (464)
T 3m6w_A           87 EPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALA  164 (464)
T ss_dssp             CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHH
T ss_pred             CHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhh
Confidence            334455666666778899999999999999999999876689999999999999999999999986  999999998765


Q ss_pred             HHHHhCCCCCceEEEEEcCCcc---------c----------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          185 KALILNGEASSYDFAFVDAEKR---------M----------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~---------~----------------~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ...     .++||+|++|.+..         +                +..+++.+.++|||||+|++..+.+.
T Consensus       165 ~~~-----~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          165 EAF-----GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             HHH-----CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             hhc-----cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence            433     57899999987521         1                26688899999999999998765543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.60  E-value=5e-15  Score=127.12  Aligned_cols=110  Identities=16%  Similarity=0.214  Sum_probs=92.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++.++++++.+|+.+.. .     .+++|
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~f  130 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-F-----EDASF  130 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S-----CTTCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-C-----CCCCc
Confidence            3467899999999999999999875  47999999999999999999999898888999999987631 1     14789


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      |+|++...   ..+...+++++.++|||||.+++.+....+
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  171 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA  171 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence            99998654   345678999999999999999998776543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.60  E-value=5e-15  Score=122.30  Aligned_cols=113  Identities=20%  Similarity=0.310  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..+.....+...+...++.+|||||||+|..+..+++.   .++|+++|+++.+++.|+++++..+.. +++++.+|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            45667777777777778899999999999999999987   479999999999999999999988876 69999999977


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ....      .++||+|+++.......   +.+.++|+|||++++.
T Consensus       137 ~~~~------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          137 GWQA------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCGG------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             CCcc------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            4332      37899999987654432   3678999999999985

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.60  E-value=4.5e-15  Score=131.64  Aligned_cols=112  Identities=21%  Similarity=0.372  Sum_probs=91.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++.+|+.+.++..    ..+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~----~~~  193 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AEG  193 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CTT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc----cCC
Confidence            4678999999999999999998644 679999999999999999998753  44 357999999998866532    136


Q ss_pred             ceEEEEEcCCcc----c---hHHHHHHHHccCCCCcEEEEe-CCCCCC
Q 024097          195 SYDFAFVDAEKR----M---YQEYFELLLQLIRVGGIIVID-NVLWHG  234 (272)
Q Consensus       195 ~fDlV~~d~~~~----~---~~~~l~~~~~lLkpgG~lvi~-d~~~~g  234 (272)
                      +||+|++|....    .   ...+++.+.++|+|||+|+++ +..|.+
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  241 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH  241 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            899999986511    1   478999999999999999997 566654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.59  E-value=7.9e-15  Score=118.78  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=91.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKAL  187 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~  187 (272)
                      +.+...+...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...++.+ +++++.+|+.+..+  
T Consensus        42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--  116 (194)
T 1dus_A           42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--
Confidence            33444444457789999999999999999987   4799999999999999999999888765 59999999876432  


Q ss_pred             HhCCCCCceEEEEEcCCc----cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          188 ILNGEASSYDFAFVDAEK----RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~----~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                           .++||+|+++...    .....+++.+.++|+|||.+++...
T Consensus       117 -----~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          117 -----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             -----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence                 4689999998763    3456789999999999999998643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.59  E-value=7e-15  Score=129.85  Aligned_cols=106  Identities=21%  Similarity=0.342  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hCC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++..  .++ ..+++++.+|+.+.++..     .+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  188 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-----CC
Confidence            4678999999999999999998644 67999999999999999998865  223 357999999998866543     47


Q ss_pred             ceEEEEEcCCcc-----c-h-HHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKR-----M-Y-QEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~-----~-~-~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||+|++|....     . + ..+++.+.++|+|||++++..
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            899999987411     1 1 789999999999999999963

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.59  E-value=1.2e-14  Score=126.78  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcChhH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD  182 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~  182 (272)
                      .+...+.+..+.. .++.+|||||||+|..+..+++.+++..+|+++|+++.+++.|+++++.. +...+++++++|+.+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            3444455544432 36789999999999999999987744789999999999999999999876 445689999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEEEE
Q 024097          183 SLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ...........++||+|++.....  +...+++++.++|+|||.|++
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            321100000126899999875421  678899999999999999998

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.59  E-value=8.1e-15  Score=128.05  Aligned_cols=105  Identities=15%  Similarity=0.325  Sum_probs=85.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hCC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .++ ..+++++.+|+.+.++..     .+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  162 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----KN  162 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----SS
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            4568999999999999999998654 67999999999999999998865  233 358999999998765432     46


Q ss_pred             ceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++|....        ....+++.+.++|+|||++++.
T Consensus       163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            899999986533        2368899999999999999996

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.59  E-value=3.4e-15  Score=129.40  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|.++..+++.++.+.+|+++|+++.+++.|++++...+.  +++++++|+.+...       +++
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~   89 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------NDK   89 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SSC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CCC
Confidence            445788999999999999999999887568999999999999999999876554  69999999976321       368


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ||+|++...   ..+...+++++.++|+|||++++.+..|
T Consensus        90 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             eeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            999998765   3456789999999999999999887764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=129.52  Aligned_cols=115  Identities=18%  Similarity=0.303  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC---------------------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------  170 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---------------------------  170 (272)
                      .++++|||||||+|..+..+++.++ ..+|+|+|+++.+++.|+++++..+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3678999999999999999999986 579999999999999999987654422                           


Q ss_pred             ------------------------------CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc---c------chHHH
Q 024097          171 ------------------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---R------MYQEY  211 (272)
Q Consensus       171 ------------------------------~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~---~------~~~~~  211 (272)
                                                    ++++|+++|+......+.. ...++||+|++....   +      ....+
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~-~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE-AQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT-TCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc-ccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                          5799999998753222211 125799999987753   2      45678


Q ss_pred             HHHHHccCCCCcEEEEeCCCCCC
Q 024097          212 FELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       212 l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ++++.++|+|||+|++....|..
T Consensus       203 l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HHHHHHHhCCCcEEEEecCCchh
Confidence            99999999999999998766653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.58  E-value=2.1e-14  Score=123.95  Aligned_cols=116  Identities=16%  Similarity=0.247  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          104 SPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       104 ~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+....++..++..  .++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.++++++..++. +++++++|+.
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            45566666666654  4567999999999999999998876 689999999999999999999988876 6999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+       .++||+|+++.+.                            ..+..+++.+.++|+|||++++.
T Consensus       170 ~~~~-------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          170 SALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             GGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhcc-------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            7432       3689999998431                            23467888999999999999986

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.58  E-value=5.5e-15  Score=122.01  Aligned_cols=117  Identities=13%  Similarity=0.007  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC-----------CC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----------VS  170 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-----------~~  170 (272)
                      .+++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+|+|+|+.|++.|+++.....           ..
T Consensus         6 ~~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~   81 (203)
T 1pjz_A            6 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   81 (203)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             cCCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccC
Confidence            4556666665543 2346789999999999999999986   4699999999999999998753210           12


Q ss_pred             CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEE
Q 024097          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       171 ~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+++++++|+.+.....     .++||+|++....     .....+++++.++|||||++++
T Consensus        82 ~~v~~~~~d~~~l~~~~-----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           82 PGIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             SSSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             CccEEEECccccCCccc-----CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            46999999997753220     1689999975432     2345689999999999998443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.58  E-value=5.5e-15  Score=122.65  Aligned_cols=114  Identities=14%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .+...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...++. +++++.+|+.+..  +    .+
T Consensus        32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~----~~  104 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L----PD  104 (219)
T ss_dssp             HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S----CS
T ss_pred             HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C----CC
Confidence            334556789999999999999999998755679999999999999999999988876 6999999986632  1    14


Q ss_pred             CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ++||+|++...   ..+...+++++.++|+|||.+++.+.....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  148 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE  148 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence            78999998765   335678999999999999999997655443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.58  E-value=7.5e-15  Score=127.68  Aligned_cols=111  Identities=14%  Similarity=0.222  Sum_probs=93.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..+  .+|+++|+++.+++.|++++...++.++++++.+|+.+.. .     .+++
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~  150 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-C-----EDNS  150 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-S-----CTTC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-C-----CCCC
Confidence            445678999999999999999998753  6999999999999999999999998888999999987631 1     1478


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|++...   ..+...+++++.++|||||.+++.+.....
T Consensus       151 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  192 (297)
T 2o57_A          151 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED  192 (297)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             EeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence            999998755   334678999999999999999998765443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.58  E-value=1e-14  Score=120.09  Aligned_cols=103  Identities=11%  Similarity=0.201  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+..+ ++++.+|+.+..        .++||
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~fD  127 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--------DGKFD  127 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--------CSCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--------CCCce
Confidence            46789999999999999998874 3 4699999999999999999999888875 999999997632        47899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+++........+++.+.++|+|||.+++.+..
T Consensus       128 ~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          128 LIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            9999988777788899999999999999996443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.58  E-value=6.6e-14  Score=124.12  Aligned_cols=109  Identities=15%  Similarity=0.168  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++.+|||+|||+|..++.+++.   +.+|+++|+|+.+++.|+++++.+++.+ +++++++|+.+.++.....  .++|
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~--~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--GSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--TCCB
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc--CCCc
Confidence            35679999999999999999984   3599999999999999999999999876 5999999998876543211  3689


Q ss_pred             EEEEEcCCc-------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~~-------------~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|++|.+.             ..+..+++.+.++|+|||++++....
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            999998762             12567889999999999998776544

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.58  E-value=1.4e-14  Score=125.35  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=88.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...++..+++++.+|+.+..+..     +++||+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~fD~  139 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL-----ETPVDL  139 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC-----SSCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc-----CCCceE
Confidence            3579999999999999999986   56999999999999999999998888778999999997754221     579999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++...   ..+...+++++.++|||||++++...
T Consensus       140 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          140 ILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            998765   34567899999999999999998754

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.58  E-value=1.7e-14  Score=118.73  Aligned_cols=100  Identities=11%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++.+ ++++.+|+.+..+       .++||+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~D~  135 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS-------EPPFDG  135 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC-------CSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc-------cCCcCE
Confidence            478999999999999999999876 6899999999999999999999888865 9999999976421       468999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++.. ......+++.+.++|+|||.+++.
T Consensus       136 i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          136 VISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99764 456778999999999999999986

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.57  E-value=3e-14  Score=125.48  Aligned_cols=124  Identities=17%  Similarity=0.229  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.++. +++++++|+.
T Consensus       101 ~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~  179 (315)
T 1ixk_A          101 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSL  179 (315)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGG
T ss_pred             EEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChh
Confidence            345556666677777778899999999999999999998875689999999999999999999999986 5999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +... .     .++||+|++|.+..                         ....+++.+.++|||||++++.....
T Consensus       180 ~~~~-~-----~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          180 HIGE-L-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GGGG-G-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hccc-c-----cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            7532 2     46899999985411                         02478899999999999999976543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=1.3e-14  Score=127.12  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=85.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||||||+|..+.++++..+ +.+|+++|+++++++.|++++... ...+++++++|+.+.+...    ..++||+||
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~----~~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESF----TPASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTC----CTTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhc----cCCCCCEEE
Confidence            3999999999999999999876 679999999999999999987532 2458999999998876532    136899999


Q ss_pred             EcCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 024097          201 VDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       201 ~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|....       ...++++.+.++|+|||+++++.
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            986422       13689999999999999999874

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.57  E-value=5.2e-15  Score=124.44  Aligned_cols=121  Identities=16%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHHH--HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAML--VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l--~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .-+...+.++..+  +...++.+|||+|||+|+.+..+++.+++.++|+++|+++++++.++++.++.   .++..+.+|
T Consensus        58 ~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d  134 (233)
T 4df3_A           58 YRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGD  134 (233)
T ss_dssp             TTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESC
T ss_pred             CchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEe
Confidence            3344344444333  33568899999999999999999999988999999999999999998876443   368999988


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-chHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.....   ...+.+|+||++.... +...++.++.+.|||||.+++.
T Consensus       135 ~~~p~~~~---~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          135 ARFPEKYR---HLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TTCGGGGT---TTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCccccc---cccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            86532110   1257899999987644 4567899999999999999985

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=1e-14  Score=126.18  Aligned_cols=105  Identities=16%  Similarity=0.101  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|.+++.+++..+ . +|+++|+++.+++.|+++++.+++.++++++++|+.+...       .++||
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------~~~fD  194 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  194 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------cCCcc
Confidence            3578999999999999999999754 2 8999999999999999999999998889999999987543       37899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|+++.+. ....+++.+.++|+|||++++.....
T Consensus       195 ~Vi~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          195 RILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEECCch-hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            99998763 34568899999999999999976543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=1.8e-14  Score=124.74  Aligned_cols=105  Identities=10%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++..+++++.+|+.+.         +++||
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~fD  131 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---------DEPVD  131 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------CCCCS
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------CCCee
Confidence            4667999999999999999997654  599999999999999999998888877899999998652         36899


Q ss_pred             EEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       198 lV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +|++....     .+...+++++.++|||||.+++.+....
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            99987542     4567899999999999999999876644

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.57  E-value=2.3e-14  Score=119.74  Aligned_cols=116  Identities=21%  Similarity=0.281  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChhHHHHHHHHHHHhCC----CCCE
Q 024097          104 SPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGV----SHKV  173 (272)
Q Consensus       104 ~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v  173 (272)
                      .+.....+...+  ...++.+|||||||+|+.+..+++...    +.++|+++|+++++++.|+++++..++    .+++
T Consensus        63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            455555544444  355678999999999999999999875    467999999999999999999988873    3479


Q ss_pred             EEEEcChhHHH----HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          174 KIKHGLAADSL----KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       174 ~~~~~d~~~~~----~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++.+|+.+..    ..      .++||+|+++.....   +++.+.++|+|||++++.
T Consensus       143 ~~~~~d~~~~~~~~~~~------~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKKE------LGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEECCGGGCCHHHHHH------HCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEEECChHhcccccCcc------CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            99999997743    22      378999999877554   357888999999999986

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.57  E-value=1.9e-14  Score=132.33  Aligned_cols=124  Identities=17%  Similarity=0.229  Sum_probs=101.7

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+. ++.++++|+.+.
T Consensus        90 Qd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l  168 (456)
T 3m4x_A           90 QEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAEL  168 (456)
T ss_dssp             CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHH
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHh
Confidence            3444556666667778899999999999999999998876689999999999999999999999987 599999999876


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ....     .++||+|++|.+..                         ....+++.+.++|||||+|++..+...
T Consensus       169 ~~~~-----~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          169 VPHF-----SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             HHHH-----TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             hhhc-----cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence            5444     57899999997621                         123678888999999999998766543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.57  E-value=4.1e-15  Score=122.53  Aligned_cols=120  Identities=20%  Similarity=0.279  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          104 SPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       104 ~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .+....++..++..    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            45555555555543    5678999999999999999999875 67999999999999999999987776  68999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-----------------------------chHHHHHHHHccCCCCcE-EEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLIRVGGI-IVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-----------------------------~~~~~l~~~~~lLkpgG~-lvi~  228 (272)
                      +.+..+....  ..++||+|+++.+..                             .+..+++.+.++|+|||+ +++.
T Consensus        88 ~~~~~~~~~~--~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           88 GIEWLIERAE--RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHHHHHH--TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             hHhhhhhhhh--ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8874443111  137899999974411                             015677888899999999 5553

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=8.1e-15  Score=123.49  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|+++.+..+  .+++++++|+.+....+    .+++||
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~----~~~~fD  130 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc----CCCceE
Confidence            456799999999999999997642  2489999999999999999886655  46999999997753222    247899


Q ss_pred             EEEEcCC--------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~--------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+++..        ......+++++.++|||||++++.+..
T Consensus       131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             EEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            9999322        112335689999999999999987654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.57  E-value=2.8e-14  Score=123.20  Aligned_cols=119  Identities=21%  Similarity=0.310  Sum_probs=100.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++..++.++++++.+|+.
T Consensus        95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  174 (277)
T 1o54_A           95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            45666667777777777889999999999999999999865578999999999999999999998888668999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +.++       .++||+|+++.+  ....+++.+.++|+|||.+++..
T Consensus       175 ~~~~-------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          175 EGFD-------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             GCCS-------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             Hccc-------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            7521       468999999764  33467899999999999999864

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.57  E-value=2.5e-14  Score=122.10  Aligned_cols=119  Identities=13%  Similarity=-0.001  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH----------h----
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER----------A----  167 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~----------~----  167 (272)
                      ...+...+++..+....++.+|||+|||+|..+.+|++.   +.+|+|+|+|+.+++.|++....          .    
T Consensus        51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~  127 (252)
T 2gb4_A           51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKV  127 (252)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccc
Confidence            456666666665554457789999999999999999985   56999999999999999775421          0    


Q ss_pred             --CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          168 --GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       168 --~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                        ....+++++++|+.+....     ..++||+|+....     ......+++++.++|||||++++.
T Consensus       128 ~~~~~~~i~~~~~D~~~l~~~-----~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          128 FKSSSGSISLYCCSIFDLPRA-----NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             EEETTSSEEEEESCTTTGGGG-----CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCCceEEEECccccCCcc-----cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence              0124799999999875321     1278999996543     234567899999999999998643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.57  E-value=1.1e-14  Score=124.28  Aligned_cols=112  Identities=16%  Similarity=0.223  Sum_probs=90.6

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.|++++...+.. +++++.+|+.+. + +   
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~---   99 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F---   99 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S---
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C---
Confidence            3334455678899999999999999999874   49999999999999999999888876 699999998663 1 1   


Q ss_pred             CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                       .+++||+|++...   ..+...+++++.++|||||.+++.+...
T Consensus       100 -~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          100 -TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             -CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             -CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence             1478999998755   3456789999999999999999965443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.56  E-value=2.6e-14  Score=126.79  Aligned_cols=121  Identities=16%  Similarity=0.247  Sum_probs=94.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC----------CCC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG----------VSH  171 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~----------~~~  171 (272)
                      ...+.....+...+...++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|++++...+          ...
T Consensus        88 ~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            4567666666666777888999999999999999999986546899999999999999999998643          235


Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++++.+|+.+....+    .+++||+|+++.....  .+++.+.++|+|||.+++.
T Consensus       168 ~v~~~~~d~~~~~~~~----~~~~fD~V~~~~~~~~--~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          168 NVDFIHKDISGATEDI----KSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             CEEEEESCTTCCC-----------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEE
T ss_pred             ceEEEECChHHccccc----CCCCeeEEEECCCCHH--HHHHHHHHhcCCCcEEEEE
Confidence            7999999997743222    1357999999865332  3789999999999999974

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.56  E-value=1.3e-14  Score=121.48  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+|||+||| +|..+..+++..  +.+|+++|+++.+++.|+++++..+.  +++++++|+....+ +    .+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~----~~~~  123 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-V----VEGT  123 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-T----CCSC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-c----ccCc
Confidence            4577899999999 999999999875  47999999999999999999998887  69999999643211 1    1478


Q ss_pred             eEEEEEcCCcc----------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKR----------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~----------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|+++.+..                      .+..+++.+.++|+|||.+++.
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            99999885421                      1367899999999999999984

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.56  E-value=4e-14  Score=120.38  Aligned_cols=119  Identities=19%  Similarity=0.229  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcCh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLA  180 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~  180 (272)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++.. + .++++++.+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~  157 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKL  157 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCG
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECch
Confidence            455666666666677778899999999999999999998655789999999999999999999887 7 45799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+. + +    .+++||+|+++..  ....+++.+.++|+|||.+++..
T Consensus       158 ~~~-~-~----~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          158 EEA-E-L----EEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             GGC-C-C----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hhc-C-C----CCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            764 1 1    1368999999754  33467999999999999999854

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=121.78  Aligned_cols=106  Identities=11%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH------hCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+++.+++.|+++++.      .+. .+++++.+|+.+.++...   
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~---  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF---  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC---
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC---
Confidence            3556899999999999999999876 68999999999999999988764      233 469999999987454321   


Q ss_pred             CCCceEEEEEcCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..++||.|++......           ...+++.+.++|+|||.|++.
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            2478999998654221           257899999999999999874

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.56  E-value=2.2e-14  Score=121.08  Aligned_cols=120  Identities=14%  Similarity=0.219  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ++.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++...+.. +++++.+|+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~   81 (239)
T 1xxl_A            6 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL   81 (239)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC
T ss_pred             cCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC
Confidence            34445555566667788999999999999999999864   49999999999999999999888876 699999998653


Q ss_pred             HHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                       +.     .+++||+|++...   ..+...+++++.++|+|||.+++.+...+
T Consensus        82 -~~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           82 -PF-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP  128 (239)
T ss_dssp             -CS-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             -CC-----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence             21     1478999998755   34567899999999999999999765543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.56  E-value=6e-14  Score=121.81  Aligned_cols=116  Identities=16%  Similarity=0.386  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       103 ~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ..+.+..++..++.   ..++.+|||+|||+|..++.+++. + +.+|+++|+|+++++.|+++++..++.++++++++|
T Consensus       104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D  181 (284)
T 1nv8_A          104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE  181 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred             cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECc
Confidence            34555555555443   236689999999999999999998 5 789999999999999999999999998789999999


Q ss_pred             hhHHHHHHHhCCCCCce---EEEEEcCCccc----------------------hHHHHHHHH-ccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSY---DFAFVDAEKRM----------------------YQEYFELLL-QLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~f---DlV~~d~~~~~----------------------~~~~l~~~~-~lLkpgG~lvi~  228 (272)
                      +.+.++        ++|   |+|+++.+...                      -..+++.+. +.|+|||.+++.
T Consensus       182 ~~~~~~--------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          182 FLEPFK--------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TTGGGG--------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             chhhcc--------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            987432        468   99999854110                      126789999 999999999985

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.56  E-value=2.4e-14  Score=125.80  Aligned_cols=106  Identities=8%  Similarity=0.061  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..  +.+|+++|+++++++.|++++...++.++++++.+|+.+.         +++||
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~fD  157 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVD  157 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCS
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------CCCcC
Confidence            467899999999999999999875  3699999999999999999999888877899999998653         36899


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +|++...     ..+...+++++.++|+|||.+++.+.....
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            9998754     245688999999999999999998765443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=7e-14  Score=127.57  Aligned_cols=125  Identities=18%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHH-------HHHHHHhCCC-CCEEEE
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA-------KKYYERAGVS-HKVKIK  176 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a-------~~~~~~~~~~-~~v~~~  176 (272)
                      +.....+...+...++.+|||||||+|..++.+++..+ ..+|+|+|+++.+++.|       +++++..|+. .+++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            44444444555666788999999999999999999765 46899999999999998       8888888853 579999


Q ss_pred             EcChhHH---HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          177 HGLAADS---LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       177 ~~d~~~~---~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      ++|....   +...     .++||+|++...  ..+....++++.+.|||||.|++.+.+.+..
T Consensus       307 ~gD~~~~~~~~~~~-----~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          307 LKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             ESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             EcCccccccccccc-----cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            9865421   2111     368999998633  3456677899999999999999987665543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.56  E-value=1.6e-14  Score=120.82  Aligned_cols=105  Identities=12%  Similarity=0.118  Sum_probs=88.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|++|++.+++.++++++.+|..+.++.      .++||+
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~------~~~~D~   87 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE------TDQVSV   87 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc------CcCCCE
Confidence            456999999999999999998754 6799999999999999999999999998999999999875431      136999


Q ss_pred             EEEcCC-ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~-~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++.+. ......+++.+...|+++|.+|+.-.
T Consensus        88 IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           88 ITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             EEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             EEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            987543 33367889999999999999998644

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.56  E-value=1.6e-14  Score=127.19  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..+.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..++.+ ++++.+|+.+
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~  137 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYY  137 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhh
Confidence            345566666666666788999999999999999999986645789999999999999999999888875 9999999977


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+.      .++||+|+++...+...   +.+.++|||||++++..
T Consensus       138 ~~~~------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          138 GVPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CCGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             cccc------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            4331      36899999987755543   56788999999999964

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.56  E-value=2.2e-14  Score=118.81  Aligned_cols=116  Identities=20%  Similarity=0.316  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..+.....+...+...++.+|||||||+|..+..+++..++..+|+++|+++.+++.+++++...+.. +++++.+|+.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  139 (215)
T 2yxe_A           61 SAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTL  139 (215)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGG
T ss_pred             CcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCccc
Confidence            34666666666666677889999999999999999998744579999999999999999999888876 49999999855


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.      .++||+|++........   +.+.++|+|||.+++.
T Consensus       140 ~~~~------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          140 GYEP------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             CCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CCCC------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            3321      36899999987655432   5788999999999986

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.55  E-value=3.5e-15  Score=130.63  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=90.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..++....++.+|+++|+++.+++.|++++...++.++++++++|+.+...       .++|
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  188 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-------REGY  188 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-------CSCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-------cCCe
Confidence            356789999999999999998633334789999999999999999999888888889999999977421       3789


Q ss_pred             EEEEEcCCc------cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          197 DFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       197 DlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      |+|++....      .....+++++.++|||||++++.+....
T Consensus       189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          189 DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP  231 (305)
T ss_dssp             EEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred             EEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence            999986642      2233479999999999999999886543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=2.3e-14  Score=123.65  Aligned_cols=108  Identities=9%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      +....++.+|||+|||+|.+++.+++..+ .++|+++|+++.+++.|+++++.+++. +++++.+|+.+. +.      .
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~~------~  184 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-EL------K  184 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-CC------T
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-Cc------c
Confidence            33345678999999999999999999865 679999999999999999999998886 488999999875 32      3


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ++||+|+++.+. ....++..+.+.|+|||++++....
T Consensus       185 ~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          185 DVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             TCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            689999999875 5667899999999999999986554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.55  E-value=1.3e-14  Score=124.75  Aligned_cols=109  Identities=22%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.+++++...+.. +++++.+|+.+...      .+++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  106 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSF  106 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCe
Confidence            35678999999999999999999865 689999999999999999999888876 59999999976321      24789


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      |+|++...   ..+...+++.+.++|+|||++++.+..+.
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  146 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHG  146 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence            99998765   34567899999999999999999775543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=8.7e-15  Score=122.76  Aligned_cols=106  Identities=16%  Similarity=0.199  Sum_probs=87.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|++++...+   +++++.+|+.+...       .++|
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~-------~~~f  110 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF-------EEKY  110 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC-------CSCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC-------CCCc
Confidence            34678999999999999999999886 7899999999999999999875433   79999999976421       3789


Q ss_pred             EEEEEcCCccc-----hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          197 DFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       197 DlV~~d~~~~~-----~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      |+|++......     ...+++++.++|+|||.+++.+....
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            99998765332     23589999999999999999876543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.55  E-value=2.9e-14  Score=122.89  Aligned_cols=120  Identities=22%  Similarity=0.280  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-C-CCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G-VSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d  179 (272)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.|+++++.. + +.++++++.+|
T Consensus        82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            456767777777777778889999999999999999997655789999999999999999999887 5 45579999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +.+..  +    ..++||+|+++..  +...+++.+.++|+|||.+++..
T Consensus       162 ~~~~~--~----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          162 LADSE--L----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             GGGCC--C----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hHhcC--C----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            97641  1    1468999999765  33367999999999999999853

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.55  E-value=2.3e-14  Score=124.38  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...+  + ..+++++.+|+.+.++..     .+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  150 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  150 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-----CC
Confidence            4678999999999999999997643 6799999999999999999875432  2 357999999998876543     47


Q ss_pred             ceEEEEEcCCcc-----c--hHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~-----~--~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||+|++|....     .  ...+++.+.++|+|||++++..
T Consensus       151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            899999986411     1  1689999999999999999873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=1.3e-14  Score=127.36  Aligned_cols=110  Identities=11%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++++..++.++++++.+|+.+..  +    .+++|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~f  186 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--F----DKGAV  186 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C----CTTCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--C----CCCCE
Confidence            4457899999999999999999875  46999999999999999999999998888999999997631  1    14799


Q ss_pred             EEEEEcCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          197 DFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      |+|++.....  +...+++++.++|||||.+++.+.....
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNP  226 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             eEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            9999865422  3788999999999999999987655443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=2.7e-14  Score=118.59  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+..+..   .++.++.+|+.+.....   ...++||
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~---~~~~~fD  128 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS---GIVEKVD  128 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT---TTCCCEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc---cccccee
Confidence            4677999999999999999999887 689999999999887766655432   36889988886531100   0137899


Q ss_pred             EEEEcCCccch-HHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMY-QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~-~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+++...... ..+++++.++|||||.+++.
T Consensus       129 ~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            99998654433 34589999999999999986

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.54  E-value=7.4e-14  Score=125.31  Aligned_cols=127  Identities=18%  Similarity=0.267  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCc------cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC
Q 024097          119 GAQRCIEVGVY------TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G------~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~  190 (272)
                      ++.+|||||||      +|..++.+++...++++|+++|+++++.         . ...+++++++|+.+.  ...+.. 
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~-  284 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR-  284 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH-
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc-
Confidence            67899999999      7777877776543378999999999972         1 235799999999763  211110 


Q ss_pred             CCCCceEEEEEcCCc--cchHHHHHHHHccCCCCcEEEEeCCC------CCCcccCCcCCCHhhHHHHHHHHHhh
Q 024097          191 GEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVL------WHGKVADQMVNDAKTISIRNFNKNLM  257 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~--~~~~~~l~~~~~lLkpgG~lvi~d~~------~~g~~~~~~~~~~~~~~~~~~~~~l~  257 (272)
                       ..++||+|+++...  .+....|++++++|||||++++.|+.      |.|...+...+......++++.+.+.
T Consensus       285 -~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~  358 (419)
T 3sso_A          285 -RYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQ  358 (419)
T ss_dssp             -HHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHT
T ss_pred             -ccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhc
Confidence             02789999998653  44677899999999999999999988      23322211122233446777776664

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.54  E-value=9.1e-14  Score=133.83  Aligned_cols=157  Identities=10%  Similarity=0.083  Sum_probs=113.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh------CCCCCEEEEEcChh
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GVSHKVKIKHGLAA  181 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~  181 (272)
                      .+++...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++...      +. .+++++++|+.
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~  788 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTT
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchH
Confidence            344455555568899999999999999999987644579999999999999999977643      33 36999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc-----hHHHHHHHHccCCCCcEEEEeCCC------CCCc---------------
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVL------WHGK---------------  235 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~-----~~~~l~~~~~lLkpgG~lvi~d~~------~~g~---------------  235 (272)
                      +...      ..++||+|++.....+     ...+++++.++|||| .+++....      +.+.               
T Consensus       789 dLp~------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~  861 (950)
T 3htx_A          789 EFDS------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLP  861 (950)
T ss_dssp             SCCT------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCS
T ss_pred             hCCc------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccc
Confidence            7422      1478999998766433     335789999999999 67665432      1111               


Q ss_pred             -ccCCcCC-CHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          236 -VADQMVN-DAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       236 -~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                       +..+... ......++++.+.+.++.+|.+.+.++|||
T Consensus       862 ~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          862 KFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             SCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence             1111100 111234666777788899999999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.54  E-value=3.4e-14  Score=118.68  Aligned_cols=104  Identities=14%  Similarity=0.238  Sum_probs=85.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----CCCEEEEEcChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..++.+|||||||+|..+..+++..++.++|+++|+++.+++.+++++...+.    .++++++.+|+.+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            45678999999999999999998865467999999999999999999988764    34799999998753221      


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .++||+|+++.....   +++.+.++|||||++++.-
T Consensus       149 ~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            368999999876544   3568889999999999863

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.54  E-value=8.4e-14  Score=125.31  Aligned_cols=119  Identities=12%  Similarity=0.056  Sum_probs=91.7

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHH-------HHhCC-CCCEEEEEcChhHH
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-------ERAGV-SHKVKIKHGLAADS  183 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-------~~~~~-~~~v~~~~~d~~~~  183 (272)
                      ...+...++.+|||||||+|..++.++...+ ..+++|||+++.+++.|+++.       +..|+ ..+++|+++|+.+.
T Consensus       166 l~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l  244 (438)
T 3uwp_A          166 IDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  244 (438)
T ss_dssp             HHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence            3344556788999999999999999998765 457999999999999998764       34565 35899999999874


Q ss_pred             HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      .....    -..||+||++..  ..+....+.++++.|||||.||+.+.+.+..
T Consensus       245 p~~d~----~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d  294 (438)
T 3uwp_A          245 EWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLN  294 (438)
T ss_dssp             HHHHH----HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred             ccccc----cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence            32100    147999998754  3456677888999999999999987765543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.54  E-value=3.5e-15  Score=125.91  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .++..+....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++.++++++++|+.+..+   
T Consensus        68 ~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---  141 (241)
T 3gdh_A           68 HIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---  141 (241)
T ss_dssp             HHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---
T ss_pred             HHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---
Confidence            33344444457899999999999999999985   479999999999999999999999886689999999987542   


Q ss_pred             hCCCCCceEEEEEcCCccc---hHHHHHHHHccCCCCcEEEEeC
Q 024097          189 LNGEASSYDFAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~---~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                          .++||+|+++.+...   ....+..+.++|+|||+++++.
T Consensus       142 ----~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ----FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ----GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ----cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                479999999876332   2224556778899999877754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.54  E-value=2.1e-14  Score=129.34  Aligned_cols=111  Identities=10%  Similarity=0.113  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC--CEEEEEcChhHHHHHH
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLAADSLKAL  187 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~  187 (272)
                      ++...+...++.+|||+|||+|..++.+++..| +.+|+++|+++.+++.++++++.+++.+  +++++.+|+.+..+  
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--  289 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--  289 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--
Confidence            343334444558999999999999999999876 6899999999999999999999988754  58889999977322  


Q ss_pred             HhCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097          188 ILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                           .++||+|+++.+..        ....+++.+.++|+|||.+++-
T Consensus       290 -----~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          290 -----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             -----TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                 46899999986622        2346799999999999999984

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.53  E-value=7e-14  Score=113.90  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=87.8

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .++...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.. +++++.+|+.+...       
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------   94 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTF-------   94 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCCC-------
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCCC-------
Confidence            3344557789999999999999999986   469999999999999999999888875 49999999876321       


Q ss_pred             CCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .++||+|++...     ......+++.+.++|+|||.+++-+.
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            378999998764     22567899999999999999776443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.53  E-value=5.3e-14  Score=123.32  Aligned_cols=106  Identities=12%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH---hCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..   .....+++++.+|+.+.+...    ..+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~----~~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT----PDN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS----CTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc----cCC
Confidence            4678999999999999999998643 67999999999999999998743   222457999999998765421    147


Q ss_pred             ceEEEEEcCCccc-------hHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~-------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++|.....       ...+++.+.++|+|||++++.
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8999999875322       157899999999999999986

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.53  E-value=2.3e-14  Score=122.14  Aligned_cols=108  Identities=8%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++....   .+++++.+|+.+. +.     .+++
T Consensus        52 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~~-----~~~~  120 (266)
T 3ujc_A           52 ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-EF-----PENN  120 (266)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-CC-----CTTC
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-CC-----CCCc
Confidence            34567899999999999999999975  479999999999999999876433   5799999999763 11     2479


Q ss_pred             eEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|++....     .+...+++++.++|+|||.+++.+.....
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999987652     45678899999999999999998765443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=1.8e-14  Score=119.36  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=86.8

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .++..++...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+   +++++++|+.+..+   
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~---  111 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST---  111 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCC---
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCC---
Confidence            34444455556789999999999999999886   3599999999999999999875432   79999999977531   


Q ss_pred             hCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          189 LNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                          .++||+|++....      .....+++++.++|+|||++++...
T Consensus       112 ----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence                5799999987542      2235679999999999999998643

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.52  E-value=9.8e-14  Score=128.65  Aligned_cols=126  Identities=20%  Similarity=0.255  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      .+......++..++...  ++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+. +++++++|
T Consensus        98 ~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D  176 (479)
T 2frx_A           98 YIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFD  176 (479)
T ss_dssp             EECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCC
T ss_pred             EEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCC
Confidence            34455566666666666  7889999999999999999999876789999999999999999999999986 59999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +.+.....     .++||.|++|.+..                         ....+++.+.++|||||+|++..+.+.
T Consensus       177 ~~~~~~~~-----~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          177 GRVFGAAV-----PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             STTHHHHS-----TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             HHHhhhhc-----cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            97754322     47899999986521                         024678888999999999999766543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=7e-14  Score=118.14  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++++++.|+++++..++..+++++.+|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  150 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK  150 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence            455777777777777778899999999999999999997   47999999999999999999998888678999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +...      ..++||+|+++..  ....+++.+.++|+|||.+++..
T Consensus       151 ~~~~------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          151 DAEV------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             TSCC------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             hccc------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            6320      1368999999754  33467899999999999999853

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.52  E-value=2.5e-14  Score=120.44  Aligned_cols=107  Identities=10%  Similarity=0.129  Sum_probs=86.3

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      ++..+....++.+|||||||+|..+..+++..   .+|+++|+++.+++.|++++..     +++++++|+.+..     
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~-----   99 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ-----   99 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC-----
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC-----
Confidence            34444445677899999999999999998763   4899999999999999987632     6999999997751     


Q ss_pred             CCCCCceEEEEEcCCc---cchHHHHHHHH-ccCCCCcEEEEeCCC
Q 024097          190 NGEASSYDFAFVDAEK---RMYQEYFELLL-QLIRVGGIIVIDNVL  231 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~---~~~~~~l~~~~-~lLkpgG~lvi~d~~  231 (272)
                        .+++||+|++....   .+...+++++. ++|||||.+++....
T Consensus       100 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          100 --LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             --CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             --cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence              15789999987653   35678999999 999999999997643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.52  E-value=9.8e-14  Score=118.47  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++. .  .+|+++|+++.+++.++++++.++..  +++..+|+.+.++       .++||
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~-------~~~fD  186 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP-------FGPFD  186 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG-------GCCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc-------CCCCC
Confidence            46789999999999999998874 3  39999999999999999999988875  8999999876432       36899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+++........+++.+.++|+|||++++..+.
T Consensus       187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          187 LLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            9999877666778999999999999999997543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=9.5e-14  Score=120.11  Aligned_cols=102  Identities=15%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++  +++++.+|+.+...       .++
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~  184 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QEN  184 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSC
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCC
Confidence            3347889999999999999999986   46999999999999999999988887  69999999976321       478


Q ss_pred             eEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||+|++...     ......+++.+.++|+|||++++..
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999998764     3446689999999999999977643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.52  E-value=2.9e-14  Score=119.23  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=84.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  195 (272)
                      .++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   .+++++.+|+.+..  ..+     .++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~-----~~~  143 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL-----VPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT-----CCC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc-----cCC
Confidence            35679999999999999999998755689999999999999998887543   47999999987632  111     358


Q ss_pred             eEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|+++....... .++.++.++|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987755443 4499999999999999986

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.52  E-value=2.8e-14  Score=119.57  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=88.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|++|++.+++.++++++++|..+.+..      .++||+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~------~~~~D~   93 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE------ADNIDT   93 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc------ccccCE
Confidence            557999999999999999998744 5689999999999999999999999998999999999885431      237999


Q ss_pred             EEEcCC-ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~-~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++.+. ......+++...+.|+++|.+|+.-.
T Consensus        94 IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           94 ITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            886543 34477788888999999999998743

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.52  E-value=4.5e-14  Score=119.82  Aligned_cols=105  Identities=11%  Similarity=0.136  Sum_probs=85.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--------CCCCCEEEEEcChhHHHHHHHhC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      ++.+|||||||+|..++.+++..+ +.+|+|+|+++.+++.++++++..        ++. +++++.+|+.+.++..   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~---  123 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNF---  123 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGT---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHh---
Confidence            567999999999999999999876 679999999999999999998876        664 6999999997744321   


Q ss_pred             CCCCceEEEEEcCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+.+++|.|++..+...           ...+++.+.++|+|||+|++.
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            12478999987644222           257899999999999999983

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.52  E-value=1.7e-14  Score=124.55  Aligned_cols=115  Identities=21%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~  183 (272)
                      +...+++...+...++.+|||+|||+|..+..+++.+.++++|+++|+++.+++.|+++++.. +. ++++++.+|+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~  174 (275)
T 1yb2_A           96 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF  174 (275)
T ss_dssp             ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC
T ss_pred             hhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhcc
Confidence            444445555566677889999999999999999998544689999999999999999999877 74 4699999999762


Q ss_pred             HHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+       +++||+|+++.+  ....+++.+.++|+|||++++..
T Consensus       175 ~~-------~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          175 IS-------DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             CC-------SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             Cc-------CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            21       468999999654  34568999999999999999864

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.52  E-value=1.2e-13  Score=111.78  Aligned_cols=116  Identities=9%  Similarity=0.014  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      |....+....... .++.+|||||||+|..++.++...| +.+|+++|+|+.+++.+++++...|..+++++  .|..+.
T Consensus        34 p~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~  110 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD  110 (200)
T ss_dssp             GGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred             HhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence            4444454443333 4578999999999999999988766 67999999999999999999999998766777  565443


Q ss_pred             HHHHHhCCCCCceEEEEEcCCccc---hHHHHHHHHccCCCCcEEEEeCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~~---~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+       .++||+|+.....+.   ....+..+.+.|+|||++|--++
T Consensus       111 ~~-------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfpt  153 (200)
T 3fzg_A          111 VY-------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPI  153 (200)
T ss_dssp             HT-------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEEC
T ss_pred             CC-------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeCh
Confidence            22       578999997655322   22345588999999999998763

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.52  E-value=5.8e-14  Score=118.18  Aligned_cols=106  Identities=12%  Similarity=0.064  Sum_probs=80.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++...+..+..   .++.++.+|+.......   ...++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~---~~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK---SVVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT---TTCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh---ccccce
Confidence            457889999999999999999998877899999999999876554443332   36999999986521100   013689


Q ss_pred             EEEEEcCCccchHHHHH-HHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~  228 (272)
                      |+||+|....+....+. .+.+.|||||.|++.
T Consensus       148 D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          148 DVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999987766655554 455699999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.52  E-value=3.6e-14  Score=128.20  Aligned_cols=118  Identities=21%  Similarity=0.271  Sum_probs=92.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-----C-C-CCCEEEEEcChhHHHHHHHh
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----G-V-SHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----~-~-~~~v~~~~~d~~~~~~~~~~  189 (272)
                      ..++.+|||||||+|..+..+++..+++++|+++|+++.+++.|+++++..     | . ..+++++++|+.+.......
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            457789999999999999999998755789999999999999999988765     3 2 25799999999764210000


Q ss_pred             CCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ...+++||+|++...   ..+...+++++.++|||||+|++.+.....
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADR  208 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccc
Confidence            012479999998765   345678999999999999999998766544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.52  E-value=1.8e-13  Score=123.72  Aligned_cols=109  Identities=16%  Similarity=0.169  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|||+|||+|..++.+++. + ..+|+++|+++.+++.|++|++.+++.+ +++++++|+.+.++.+...  ..+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~--~~~f  286 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLTY  286 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCCE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh--CCCc
Confidence            56789999999999999999974 2 2489999999999999999999999875 7999999999877654321  3589


Q ss_pred             EEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+|++|.+..            .+..++..+.++|+|||++++...
T Consensus       287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999987631            244567778899999999998743

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.51  E-value=3e-14  Score=119.74  Aligned_cols=105  Identities=13%  Similarity=0.105  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++   .+.+|+++|+++.+++.|++++...+...+++++.+|+.+..+       .++||+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  135 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDL  135 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeE
Confidence            456999999999999998876   3679999999999999999998765555679999999977431       468999


Q ss_pred             EEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       199 V~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      |++...     ......+++++.++|+|||++++......
T Consensus       136 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  175 (235)
T 3lcc_A          136 IFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT  175 (235)
T ss_dssp             EEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred             EEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence            997654     23677899999999999999998655443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=9.5e-14  Score=124.10  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=100.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+..+..+..+....++.+|||+|||+|..++.++...++..+++|+|+++.+++.|+++++.+++. +++++++|+.
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~  264 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR  264 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence            566777777777777778889999999999999999997633689999999999999999999999987 7999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +....      .+.||+|+++.+..           .+..+++.+.++|+|||.+++-
T Consensus       265 ~~~~~------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          265 HLPRF------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGGT------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             hCccc------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            75332      35689999987621           1467888899999999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.51  E-value=2.6e-13  Score=123.13  Aligned_cols=109  Identities=19%  Similarity=0.275  Sum_probs=92.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|||+|||+|..++.+++.-  ..+|+++|+++.+++.|+++++.+++ .++++++.+|+.+.++.+...  .++|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~--~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT--TCCE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc--CCCC
Confidence            578899999999999999999852  35999999999999999999999988 657999999998876654321  3689


Q ss_pred             EEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+|++|.+.            ..+..++..+.++|+|||++++...
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999999764            5577889999999999999998643

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.51  E-value=2.2e-13  Score=118.02  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEEEcCh
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLA  180 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~  180 (272)
                      ......++..++...++.+|||||||+|..+..+++.   +.+|+++|+|+.+++.|+++....+..   .++.+..+|+
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~  118 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW  118 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence            4566677777777778899999999999999999986   459999999999999999887544332   3588999998


Q ss_pred             hHHHHHHHhCCCCCceEEEEEc-CC---ccc-------hHHHHHHHHccCCCCcEEEEeC
Q 024097          181 ADSLKALILNGEASSYDFAFVD-AE---KRM-------YQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d-~~---~~~-------~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+....+   ...++||+|++. ..   ..+       ...+++++.++|||||++++..
T Consensus       119 ~~~~~~~---~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          119 LTLDKDV---PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             GGHHHHS---CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhCcccc---ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            7754222   125799999986 33   223       6789999999999999999864

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.51  E-value=7.1e-14  Score=117.69  Aligned_cols=116  Identities=23%  Similarity=0.375  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+.....+...+...++.+|||||||+|..+..+++..+  .+|+++|+++.+++.|+++++..++.+ ++++.+|+.
T Consensus        74 ~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  150 (235)
T 1jg1_A           74 VSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGS  150 (235)
T ss_dssp             ECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred             eccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcc
Confidence            34566666777777777888999999999999999999865  689999999999999999999888764 999999984


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..++.      ..+||+|+++......   .+.+.+.|+|||.+++.-
T Consensus       151 ~~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          151 KGFPP------KAPYDVIIVTAGAPKI---PEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             GCCGG------GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             cCCCC------CCCccEEEECCcHHHH---HHHHHHhcCCCcEEEEEE
Confidence            32221      2469999998765543   347788999999999863

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.51  E-value=1.2e-13  Score=117.01  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             HHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          108 AQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       108 ~~~l~~l~~~---~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      ..++..++..   .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...+.  +++++++|+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            3445544443   35679999999999999999985   46999999999999999999987765  5999999997632


Q ss_pred             HHHHhCCCCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          185 KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .       .++||+|++...      ......+++.+.++|+|||.++++-
T Consensus       102 ~-------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          102 F-------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             C-------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-------CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            1       368999997532      2345678999999999999999863

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.51  E-value=3.9e-14  Score=119.69  Aligned_cols=104  Identities=11%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|+.++.+++..+ ..+|+++|+++.+++.|++|++.+++.+++++..+|..+.+..      .++||+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~------~~~~D~   93 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK------KDAIDT   93 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc------cccccE
Confidence            557999999999999999998744 5689999999999999999999999988999999999885431      135999


Q ss_pred             EEEcCC-ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAE-KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~-~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++.+. ..-...+++.....|+++|.||+.-
T Consensus        94 IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           94 IVIAGMGGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             EEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             EEEeCCchHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            886443 4457778888999999999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.51  E-value=2.5e-14  Score=120.70  Aligned_cols=117  Identities=20%  Similarity=0.189  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhhc----CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          107 QAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       107 ~~~~l~~l~~~~----~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ...++..++...    ++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...+ ..+++++.+|+.+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            344555544432    57899999999999999988764  4699999999999999999887654 2368999999865


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ...      ..++||+|++.....     ....+++++.++|+|||++++.+...
T Consensus       140 ~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          140 FTP------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CCC------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cCC------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            321      146899999886532     24578999999999999999965443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.51  E-value=1e-13  Score=119.06  Aligned_cols=115  Identities=12%  Similarity=0.096  Sum_probs=89.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChh------HHHHHHHHHHHhCCCCCEEEEEcC-hhHH-HHH
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR------SLEVAKKYYERAGVSHKVKIKHGL-AADS-LKA  186 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~------~~~~a~~~~~~~~~~~~v~~~~~d-~~~~-~~~  186 (272)
                      +...++.+|||||||+|..+..+++..++.++|+++|+++.      +++.|++++...++.++++++.+| .... ++.
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC
Confidence            34457789999999999999999998644689999999997      999999999888876789999998 3221 111


Q ss_pred             HHhCCCCCceEEEEEcCCc---cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          187 LILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                           .+++||+|++....   .+...+++.+..+++|||.+++.+....+
T Consensus       119 -----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          119 -----ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             -----TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred             -----CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence                 14789999987652   23445667777778889999998766543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.50  E-value=8e-14  Score=120.29  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||+|||+|.+++.+|+.-  ..+|+++|+||.+++.+++|++.+++.++++++++|+.+...       .+.||
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-------~~~~D  194 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  194 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-------ccCCC
Confidence            468899999999999999999863  469999999999999999999999999999999999987543       47899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .|+++.+... ..++..+.++|++||+|.++..
T Consensus       195 ~Vi~~~p~~~-~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          195 RILMGYVVRT-HEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             EEEECCCSSG-GGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCCCcH-HHHHHHHHHHcCCCCEEEEEee
Confidence            9999876433 4678889999999999987654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.50  E-value=1.5e-13  Score=126.82  Aligned_cols=125  Identities=16%  Similarity=0.232  Sum_probs=100.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++++.|+. +++++.+|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            44455666677777778899999999999999999998874589999999999999999999998886 59999999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..+.+    .+++||+|++|.+...                         ...+++.+.++|||||.+++..+..
T Consensus       322 ~~~~~----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEII----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSS----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cchhh----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            42111    1267999999865211                         1567999999999999999876654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.50  E-value=2.1e-13  Score=123.74  Aligned_cols=108  Identities=24%  Similarity=0.372  Sum_probs=91.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.+++.++++++.+|+.+.++.+...  .++||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~--~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh--CCCCCE
Confidence            6789999999999999999985 2 45999999999999999999999988767999999998876654321  368999


Q ss_pred             EEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++|.+.            ..+..++..+.++|+|||++++...
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9999764            4467788999999999998887643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.49  E-value=3.5e-13  Score=121.13  Aligned_cols=108  Identities=14%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+..        +..|
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------p~~~  269 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI--------PDGA  269 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC--------CSSC
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC--------CCCc
Confidence            34578999999999999999999987 789999999 9999999999999898889999999997421        2379


Q ss_pred             EEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      |+|++.....     ....+++++.+.|+|||.+++.+..++.
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999876532     2346899999999999999998877654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.49  E-value=7.1e-13  Score=121.50  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=101.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..++.  ++++.+|+.
T Consensus       229 ~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~  305 (429)
T 1sqg_A          229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGR  305 (429)
T ss_dssp             EECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTT
T ss_pred             EeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchh
Confidence            34566777777777777889999999999999999999886 489999999999999999999998873  789999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +..+.+    ..++||+|++|.+...                         +..+++.+.++|||||++++..+.+.
T Consensus       306 ~~~~~~----~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          306 YPSQWC----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             CTHHHH----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             hchhhc----ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            754333    1368999999865211                         14778999999999999999876543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.49  E-value=2.8e-13  Score=131.06  Aligned_cols=112  Identities=19%  Similarity=0.259  Sum_probs=94.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++|||+|||+|..++.++.. + ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+.++..     .
T Consensus       535 ~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~-----~  607 (703)
T 3v97_A          535 GQMSKGKDFLNLFSYTGSATVHAGLG-G-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA-----N  607 (703)
T ss_dssp             HHHCTTCEEEEESCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC-----C
T ss_pred             HHhcCCCcEEEeeechhHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc-----C
Confidence            34457889999999999999999874 2 357999999999999999999999987 68999999999877653     4


Q ss_pred             CceEEEEEcCCc--------------cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          194 SSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       194 ~~fDlV~~d~~~--------------~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ++||+|++|.+.              ..+..++..+.++|+|||+|++....+.
T Consensus       608 ~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~  661 (703)
T 3v97_A          608 EQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG  661 (703)
T ss_dssp             CCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred             CCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence            789999999762              2356778888999999999998766544

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.49  E-value=1.2e-13  Score=115.62  Aligned_cols=112  Identities=18%  Similarity=0.247  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..+.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++...+   +++++.+|+.+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            455666666666666778899999999999999999874   699999999999999999986655   69999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+.      .++||+|+++......   .+.+.++|+|||++++..
T Consensus       128 ~~~~------~~~fD~v~~~~~~~~~---~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          128 GYEE------EKPYDRVVVWATAPTL---LCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             CCGG------GCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             cccc------CCCccEEEECCcHHHH---HHHHHHHcCCCcEEEEEE
Confidence            3221      3789999998765543   346889999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.48  E-value=1e-13  Score=116.36  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++.+..   .+++++.+|+.+......   ..++||
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~---~~~~~D  145 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN---IVEKVD  145 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT---TSCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc---cCccEE
Confidence            3567999999999999999999886 679999999999999999886543   579999999865211010   026899


Q ss_pred             EEEEcCCcc-chHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKR-MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~-~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+.+.... ....+++++.+.|+|||.+++.
T Consensus       146 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999765432 3466799999999999999996

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.48  E-value=1.2e-13  Score=113.22  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+.  +++++.+|+.+..  +    ..++||+|+
T Consensus        31 ~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~----~~~~fD~v~   99 (202)
T 2kw5_A           31 GKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--I----VADAWEGIV   99 (202)
T ss_dssp             SEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--C----CTTTCSEEE
T ss_pred             CCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--C----CcCCccEEE
Confidence            39999999999999999875   46999999999999999999988776  6999999987641  1    147899999


Q ss_pred             EcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       201 ~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +...   ......+++.+.++|+|||.+++.....
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A          100 SIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             EEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            8543   2346778999999999999999976543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.48  E-value=9.9e-14  Score=123.85  Aligned_cols=105  Identities=17%  Similarity=0.191  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++++|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++..++.++++++.+|+.+..  +    ..++
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~  133 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--L----PVEK  133 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--C----SSSC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--C----CCCc
Confidence            4567889999999999999999986 3 4699999999 599999999999999888999999997741  1    1479


Q ss_pred             eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||+|+++..      ......++..+.++|||||+++.+.
T Consensus       134 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          134 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            999998642      3456778899999999999998543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.48  E-value=2.3e-13  Score=123.20  Aligned_cols=102  Identities=23%  Similarity=0.360  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++|||+|||+|..++.+++.   +++|+++|+|+.+++.|++|++.+++..  ++.++|+.+.++.+     .+.||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~-----~~~fD~  283 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL-----EGPFHH  283 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC-----CCCEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh-----cCCCCE
Confidence            3789999999999999999985   3569999999999999999999999874  46699998876543     244999


Q ss_pred             EEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++|.+.            ..+..+++.+.++|+|||+|++...
T Consensus       284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          284 VLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999763            3456788889999999999996543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.48  E-value=1.4e-13  Score=115.69  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  195 (272)
                      .++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+.++.+..   .+++++.+|+.+..  +..     .++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~-----~~~  147 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML-----IAM  147 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG-----CCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc-----CCc
Confidence            45679999999999999999998754689999999999888887776654   46999999997632  211     478


Q ss_pred             eEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|+++....+ ...++.++.++|+|||.+++.
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            999999876333 345688899999999999994

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.48  E-value=4.5e-14  Score=120.83  Aligned_cols=111  Identities=16%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      +...+...++|....  ....+|||||||+|..+..+++.   ..+|+|+|+|+.|++.|++       ..+++++++++
T Consensus        23 p~yp~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~   90 (257)
T 4hg2_A           23 PRYPRALFRWLGEVA--PARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPA   90 (257)
T ss_dssp             CCCCHHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCT
T ss_pred             CCcHHHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhh
Confidence            333454444444433  23469999999999999999976   4599999999999987653       23699999998


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCc--cchHHHHHHHHccCCCCcEEEEeC
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~--~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+..  +    ++++||+|++....  -+...+++++.++|||||+|++-.
T Consensus        91 e~~~--~----~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           91 EDTG--L----PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             TCCC--C----CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhc--c----cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence            6631  1    25899999986542  246788999999999999998743

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.48  E-value=1.7e-13  Score=115.21  Aligned_cols=112  Identities=12%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          105 PDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       105 ~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ....+++..++...  ++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++++|+.+
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~   95 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEeccccc
Confidence            44455555555544  6789999999999999999886   46899999999999999999887665  68999999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcC-Cc------cchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDA-EK------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~-~~------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..  .     .++||+|++.. ..      .+...+++++.++|+|||.++++
T Consensus        96 ~~--~-----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           96 LN--I-----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CC--C-----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CC--c-----cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            32  1     36899999976 31      45677899999999999999984

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.48  E-value=2.4e-13  Score=122.76  Aligned_cols=106  Identities=25%  Similarity=0.371  Sum_probs=90.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++|||+|||+|..++.+++.   ..+|+++|+++.+++.|+++++.+++.+ ++++.+|+.+.++.+...  .++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~--~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE--GERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc--CCCeeE
Confidence            6789999999999999999987   3699999999999999999999999875 999999999877654321  368999


Q ss_pred             EEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |++|.+.            ..+..++..+.++|+|||++++...
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9999763            3466788999999999999998643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.48  E-value=6.8e-14  Score=117.13  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCC-----CcEEEEEeCChhHHHHHHHHHHHhCC----CCC
Q 024097          104 SPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGV----SHK  172 (272)
Q Consensus       104 ~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~  172 (272)
                      .|.....+...+  ...++.+|||||||+|+.+..+++..+.     .++|+++|+++++++.|++++...+.    ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            455444444444  3456789999999999999999987542     25999999999999999999887652    236


Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++.+|+.+..+.      .++||+|+++......   .+.+.+.|+|||++++.
T Consensus       147 v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          147 LLIVEGDGRKGYPP------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             EEEEESCGGGCCGG------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            99999999763221      2689999998775543   47788999999999986

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=9e-14  Score=115.34  Aligned_cols=110  Identities=19%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..++..+. ..++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++.     .+++++.+|+.+...  
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~--  103 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV--  103 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC--
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC--
Confidence            34444443 347789999999999999999986   5699999999999999998763     468999999876311  


Q ss_pred             HhCCCCCceEEEEEcCCccc---h--HHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          188 ILNGEASSYDFAFVDAEKRM---Y--QEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~~---~--~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                           .++||+|++......   .  ..+++++.++|||||.+++.+..+.
T Consensus       104 -----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A          104 -----PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             -----CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred             -----CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence                 278999998865332   2  2389999999999999999875543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.48  E-value=7e-14  Score=118.65  Aligned_cols=100  Identities=13%  Similarity=0.171  Sum_probs=82.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++.    ..+++++.+|+.+.. .     .+++|
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~-----~~~~f  109 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA-I-----EPDAY  109 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC-C-----CTTCE
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC-C-----CCCCe
Confidence            34678999999999999999998632  399999999999999998764    357999999996531 1     14799


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|++...   ..+...+++++.++|+|||.+++.
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            99998765   345788999999999999999996

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.47  E-value=1.9e-13  Score=123.33  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHHhh-----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          104 SPDQAQLLAMLVQI-----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       104 ~~~~~~~l~~l~~~-----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .+....++..+...     .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++.  ++++.+
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence            45555555555443     25779999999999999999986   469999999999999999999988764  899999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCc--------cchHHHHHHHHccCCCCcEEEEe
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~--------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+.+....      .++||+|+++.+.        .....+++.+.++|+|||.+++.
T Consensus       288 D~~~~~~~------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALTE------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             STTTTSCT------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcccc------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            99775321      3799999998542        23567899999999999999984

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=2e-13  Score=111.93  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ...++..+.... +.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++.      .+++++.+|+.+..  
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--   97 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS--   97 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG--
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc--
Confidence            445555555443 789999999999999999986   458999999999999998863      25899999997742  


Q ss_pred             HHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          187 LILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +    .+++||+|++...     ..+...+++++.++|+|||.+++.....
T Consensus        98 ~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           98 D----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             G----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             c----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            1    1479999998654     2366889999999999999999976443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.47  E-value=1.4e-13  Score=124.09  Aligned_cols=106  Identities=13%  Similarity=0.181  Sum_probs=88.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++++|||||||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++++++++|+.+...       .++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~  129 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL-------PEK  129 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-------SSC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-------CCc
Confidence            3457789999999999999999986 2 3499999999 9999999999999998899999999976421       378


Q ss_pred             eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ||+|+++..      ......++..+.++|+|||+++++...
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            999998642      134667889999999999999887654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.47  E-value=1.9e-13  Score=112.93  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..++..+....++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++    .+. .+++++.+|+.+..   
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~---  103 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT---  103 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC---
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC---
Confidence            344455544566789999999999999999987   4699999999999999987    444 36999999997651   


Q ss_pred             HhCCCCCceEEEEEcCCccc-----hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          188 ILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~~-----~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                          ..++||+|++......     ...+++++.++|+|||.+++.+...
T Consensus       104 ----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          104 ----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             ----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             ----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                1579999998765322     3678999999999999999986543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.47  E-value=1.3e-14  Score=124.48  Aligned_cols=97  Identities=10%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..+++|||||||+|..+..+++. +  .+|+++|+++++++.|++++...  ++ .++++++.+|+.+.+         +
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------~  138 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------K  138 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---------C
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---------h
Confidence            35689999999999999999987 4  79999999999999999876431  12 357999999997642         5


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++|....  ..+++.+.+.|+|||++++.
T Consensus       139 ~fD~Ii~d~~dp--~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          139 KYDLIFCLQEPD--IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CEEEEEESSCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred             hCCEEEECCCCh--HHHHHHHHHhcCCCcEEEEE
Confidence            799999996533  34899999999999999985

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.47  E-value=2e-13  Score=122.42  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+....+     +++||
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----p~~~D  250 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF-----PTGFD  250 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC-----CCCCS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC-----CCCcC
Confidence            5678999999999999999999987 679999999 9999999999988888778999999997631001     36899


Q ss_pred             EEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       198 lV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +|++....     .....+++++.+.|+|||.|++.+..++.
T Consensus       251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            99986542     23457899999999999999998877654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.47  E-value=1.5e-13  Score=112.95  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      .....++..+....++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++...+.  +++++.+|+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   84 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLP   84 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCC
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCC
Confidence            3455566666666678899999999999865555442  57999999999999999999887663  5889999986531


Q ss_pred             HHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          185 KALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                        +    .+++||+|++....     .+...+++++.++|+|||.+++....
T Consensus        85 --~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 --F----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             --S----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --C----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence              1    14789999986542     45677899999999999999997654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.47  E-value=1.8e-13  Score=121.72  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ...+...++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  +    
T Consensus        57 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----  127 (340)
T 2fyt_A           57 YQNPHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--L----  127 (340)
T ss_dssp             HHCGGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C----
T ss_pred             HhhhhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--C----
Confidence            33344567889999999999999999986 3 45999999997 99999999999998778999999997641  1    


Q ss_pred             CCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEE
Q 024097          192 EASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       192 ~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +.++||+|++...      ......++..+.++|||||.++.
T Consensus       128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            1378999998651      23456788889999999999984

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.46  E-value=2.3e-13  Score=117.80  Aligned_cols=105  Identities=11%  Similarity=0.051  Sum_probs=86.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...+...+++++++|+.+....     .+++||
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~fD  135 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----LGKEFD  135 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----CSSCEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-----CCCCcC
Confidence            56789999999999999998876 3 4599999999999999999998877767899999998764110     147899


Q ss_pred             EEEEcCCc-------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~-------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++....       .+...+++++.++|+|||.+++..
T Consensus       136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99987553       335678999999999999999864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.46  E-value=3.3e-13  Score=120.40  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +...++++|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  +     .+
T Consensus        46 l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~-----~~  115 (348)
T 2y1w_A           46 HTDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PE  115 (348)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SS
T ss_pred             cccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C-----CC
Confidence            34457889999999999999999885 3 46999999996 88999999999998788999999997641  1     36


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +||+|++...     .......+..+.++|+|||++++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998753     234567788889999999999854

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.46  E-value=3.5e-13  Score=119.26  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +.......++++|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++..++.++++++.+|+.+..  +   
T Consensus        30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~---  101 (328)
T 1g6q_1           30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L---  101 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C---
T ss_pred             HHhhHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C---
Confidence            333344567889999999999999999885 3 4599999999 599999999999999889999999997641  1   


Q ss_pred             CCCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       ..++||+|+++..      ......++..+.++|+|||.++.+
T Consensus       102 -~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          102 -PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             -SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             -CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence             1368999998742      233567888889999999999854

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.46  E-value=1.2e-13  Score=117.27  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.++++      ..+++++.+|+.+..  .     +++||
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~-----~~~fD   97 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P-----AQKAD   97 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C-----SSCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c-----cCCcC
Confidence            4667999999999999999999875 67999999999999999886      236899999987642  1     57899


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++...   ..+...+++++.++|+|||.+++..
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           98 LLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9998765   3356788999999999999999965

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.45  E-value=2.3e-13  Score=115.71  Aligned_cols=101  Identities=23%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++  .+...+++++.+|+.+..  +    .+++|
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~--~----~~~~f  105 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIP--L----PDESV  105 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCC--S----CTTCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCC--C----CCCCe
Confidence            356789999999999999999975   469999999999999999887  333457999999986531  1    14789


Q ss_pred             EEEEEcCCc---cchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEK---RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|++....   .+...+++++.++|+|||.+++.
T Consensus       106 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          106 HGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999987653   34678999999999999999986

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.45  E-value=5.5e-14  Score=119.44  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=82.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHH--CCCCcEEEEEeCChhHHHHHHHHHHHh---CCCCC---------------------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALV--LPESGCLVACERDARSLEVAKKYYERA---GVSHK---------------------  172 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~--~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~---------------------  172 (272)
                      ++.+|||+|||+|..+..+++.  .+ ..+|+++|+|+.+++.|++++...   ++.++                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4579999999999999999987  33 579999999999999999988765   44322                     


Q ss_pred             ----EE-------------EEEcChhHHHHHHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCCc
Q 024097          173 ----VK-------------IKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGG  223 (272)
Q Consensus       173 ----v~-------------~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG  223 (272)
                          ++             ++++|+.+..+..... ..++||+|+++.+.            ..+..+++.+.++|+|||
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG  208 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA  208 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred             hhhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence                66             9999987643210000 03489999997641            224578999999999999


Q ss_pred             EEEEeC
Q 024097          224 IIVIDN  229 (272)
Q Consensus       224 ~lvi~d  229 (272)
                      ++++..
T Consensus       209 ~l~~~~  214 (250)
T 1o9g_A          209 VIAVTD  214 (250)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            999843

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.45  E-value=3.7e-13  Score=119.94  Aligned_cols=111  Identities=13%  Similarity=0.096  Sum_probs=93.0

Q ss_pred             cC-CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~-~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .+ +.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+..+..     .+.|
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~  249 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-----GGAA  249 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-----TCCE
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-----CCCc
Confidence            34 78999999999999999999987 689999999 8999999999998888888999999997643111     3679


Q ss_pred             EEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       197 DlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      |+|++....+     ....+++++.+.|+|||.+++.+..++..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  293 (352)
T 3mcz_A          250 DVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDD  293 (352)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred             cEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            9999866532     34678999999999999999988776553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.45  E-value=2.2e-13  Score=114.88  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++         ++++.+|+.+.+..+    .+++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~----~~~~fD  103 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL----PDKYLD  103 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS----CTTCBS
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc----CCCCee
Confidence            45689999999999999999986   45899999999999988764         788999987754322    257999


Q ss_pred             EEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|++....     .....+++++.++|||||++++....
T Consensus       104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99987652     24578999999999999999997544

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.45  E-value=4.2e-13  Score=111.62  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+   +++++|+++.+++.|++++...+  .+++++.+|+.+..  +    ..++||+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~----~~~~~D~  106 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F----EDKTFDY  106 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C----CCCcEEE
Confidence            467999999999999999998643   99999999999999999988766  46999999987631  1    1468999


Q ss_pred             EEEcCC--c---cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAE--K---RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~--~---~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |++...  .   .+...+++.+.++|+|||.+++.+..
T Consensus       107 v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          107 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            998765  2   23567899999999999999987554

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.45  E-value=5.3e-13  Score=116.83  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-----CEEEEEcChhHHH--HHHHhCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSL--KALILNG  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~--~~~~~~~  191 (272)
                      ++.+|||||||+|..+..++..  ..++|+|+|+|+.+++.|+++....+...     ++++.++|.....  ..+....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            4679999999999766555543  24699999999999999999887766431     2677777762210  1111111


Q ss_pred             CCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          192 EASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       192 ~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..++||+|++....      .+...+++++.++|||||++++...
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            24799999875432      3457899999999999999998654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.44  E-value=9.4e-14  Score=118.15  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhhc-----CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          105 PDQAQLLAMLVQIL-----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       105 ~~~~~~l~~l~~~~-----~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      +....++..++...     ++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.|+++++..++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            45556666665432     467999999999999999998765 579999999999999999999999988889999999


Q ss_pred             hhHH-HHHHHhCCCCCceEEEEEcCCccc------------------hHHHHHHHHccCCCCcEEEE
Q 024097          180 AADS-LKALILNGEASSYDFAFVDAEKRM------------------YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       180 ~~~~-~~~~~~~~~~~~fDlV~~d~~~~~------------------~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +.+. ...+.. ..+++||+|+++.+...                  ...++..+.++|||||.+.+
T Consensus       125 ~~~~~~~~~~~-~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          125 QKTLLMDALKE-ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             TTCSSTTTSTT-CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             hhhhhhhhhhc-ccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            7652 211100 00158999999854211                  11234556678888887654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=2.2e-13  Score=117.45  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..+...++.+|||||||+|..+..+++  + +.+|+++|+++.+++.+++++      .+++++.+|+.+..  +     
T Consensus        51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~-----  114 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFR--V-----  114 (279)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC--C-----
T ss_pred             HHhCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC--c-----
Confidence            334455778999999999999999998  3 679999999999999998764      35889999987632  1     


Q ss_pred             CCceEEEEEcCCc---cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +++||+|++....   .+...+++++.++|+|||.+++...
T Consensus       115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            4789999987653   4567899999999999999998643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.44  E-value=6.7e-13  Score=117.37  Aligned_cols=104  Identities=18%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+.   +     +++||+|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-----~~~~D~v~  238 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V-----PSNGDIYL  238 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C-----CSSCSEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C-----CCCCCEEE
Confidence            8999999999999999999986 679999999 999999999988877777899999998762   1     35799999


Q ss_pred             EcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          201 VDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       201 ~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +.....     ....+++++.+.|+|||.+++.+...+.
T Consensus       239 ~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  277 (334)
T 2ip2_A          239 LSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA  277 (334)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             EchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            876532     2347899999999999999998876553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.44  E-value=8.7e-14  Score=121.24  Aligned_cols=103  Identities=10%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC--CCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+..  .+++++++|+.+...       +++|
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  151 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-------DKRF  151 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-------SCCE
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-------CCCc
Confidence            3459999999999999999986   468999999999999999998766532  579999999976321       4789


Q ss_pred             EEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|++...      ......+++++.++|+|||+|++....
T Consensus       152 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          152 GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             EEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            99986421      223578899999999999999997544

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.44  E-value=2.9e-13  Score=107.85  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=82.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++      ..++++..+| ...        ..++
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~~--------~~~~   75 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-KEI--------PDNS   75 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GGS--------CTTC
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CCC--------CCCc
Confidence            45567899999999999999999864   4999999999999999887      2369999888 211        1478


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|++...   ..+...+++++.++|+|||.+++.+.....
T Consensus        76 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  117 (170)
T 3i9f_A           76 VDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN  117 (170)
T ss_dssp             EEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred             eEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence            999998765   345678999999999999999998765443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.44  E-value=3.1e-13  Score=115.42  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++.      +++++++|+.+...       +++||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cCCcCE
Confidence            4589999999999999999876   4589999999999999988752      58999999976321       478999


Q ss_pred             EEEcC-Cc------cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~-~~------~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |++.. ..      .....+++++.++|+|||.++++...
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  153 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW  153 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence            99876 32      34567899999999999999998543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.44  E-value=5.3e-13  Score=110.70  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=84.4

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++       .++.+..+|+.+.....  .
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~--~  111 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAK--V  111 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTC--S
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccc--c
Confidence            333444556799999999999999999986   46999999999999999876       35778888886642111  0


Q ss_pred             CCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          191 GEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       191 ~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ...++||+|++...  ..+...+++++.++|+|||++++....
T Consensus       112 ~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          112 PVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            12356999998654  456778999999999999999997653

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.44  E-value=2.3e-13  Score=112.30  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=83.4

Q ss_pred             HHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          110 LLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       110 ~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      .+..++. ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++       +++++.+|+.+..  . 
T Consensus        33 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~-   99 (211)
T 3e23_A           33 TLTKFLGELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A-   99 (211)
T ss_dssp             HHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C-
T ss_pred             HHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C-
Confidence            3333333 345789999999999999999986   469999999999999999886       3677888886643  1 


Q ss_pred             hCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          189 LNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                          .++||+|++.....     ....+++++.++|+|||++++....
T Consensus       100 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          100 ----IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             ----CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence                58999999876532     4567899999999999999997443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.44  E-value=2.4e-12  Score=111.04  Aligned_cols=110  Identities=10%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             CCCEEEEEcCcc---CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH-----HhC
Q 024097          119 GAQRCIEVGVYT---GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL-----ILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G~---G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~  190 (272)
                      +..+|||||||+   |..+..+.+..+ +++|+++|+|+.+++.|++++..   ..+++++.+|+.+....+     ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988777766665 78999999999999999998732   347999999997632110     011


Q ss_pred             CCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          191 GEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .+.++||+|++.....     ....+++++.+.|+|||+|++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            1225899999875422     36789999999999999999987654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.44  E-value=1.2e-13  Score=115.80  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCC-hhHHHHH---HHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVA---KKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+| +.+++.|   +++....++. +++++++|+.+.....     .
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~-----~   95 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL-----K   95 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG-----T
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc-----c
Confidence            4667999999999999999997654 7899999999 6666665   7777777765 5999999997652111     2


Q ss_pred             CceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +.+|.|++..+..        ....+++++.++|||||.+++
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            6788888765421        235689999999999999998

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.44  E-value=3.7e-13  Score=119.04  Aligned_cols=107  Identities=12%  Similarity=0.083  Sum_probs=90.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+..        +.+||+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------p~~~D~  238 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL--------PAGAGG  238 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CCSCSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC--------CCCCcE
Confidence            457999999999999999999987 679999999 9999999999999888889999999996421        238999


Q ss_pred             EEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          199 AFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       199 V~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      |++.....     ....+++++.+.|+|||.+++.+...+..
T Consensus       239 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  280 (332)
T 3i53_A          239 YVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE  280 (332)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred             EEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence            99865522     24678999999999999999988776654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=9e-13  Score=116.42  Aligned_cols=107  Identities=16%  Similarity=0.268  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..+ +.+++++|++ .+++.|++++...++.++++++.+|+.+.  .+     .+.||
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~~D  234 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY-----GNDYD  234 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC-----CSCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC-----CCCCc
Confidence            5678999999999999999999986 6799999999 99999999999988887899999998763  11     24599


Q ss_pred             EEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       198 lV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +|++....     .....+++++.+.|+|||.+++.+...+
T Consensus       235 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             EEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            99986543     2346889999999999998888776654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.43  E-value=2.3e-13  Score=113.56  Aligned_cols=104  Identities=16%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC----CCEEEEEcChhHHHHHHHhCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...++.    .+++++.+|+.+...      ..
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~------~~   99 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF------HD   99 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS------CT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC------CC
Confidence            36789999999999999999986   469999999999999999988776652    368999999865311      14


Q ss_pred             CceEEEEEcCCcc---c---hHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKR---M---YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~---~---~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++||+|++.....   +   ...+++++.++|+|||.+++.+.
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            7899999876522   2   23789999999999999999754

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=5.1e-13  Score=119.92  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=84.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++++|||||||+|.+++..|++ + ..+|++||.++ +++.|+++++.+++.++|+++++++.+..  +     +++
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~a-G-A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l-----pe~  149 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQA-G-ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L-----PEQ  149 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSC
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHh-C-CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C-----Ccc
Confidence            3457899999999999999988875 2 35899999986 88999999999999999999999997742  1     478


Q ss_pred             eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ||+|++...      ......++....++|+|||.++.+..
T Consensus       150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          150 VDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             EEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence            999987421      23456677777899999999886544

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.43  E-value=1.3e-12  Score=117.64  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---------------CCCCCEEEEEcChhH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------------GVSHKVKIKHGLAAD  182 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~  182 (272)
                      .++.+|||+|||+|..++.+++..+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+.+
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~  123 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANR  123 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHH
Confidence            3678999999999999999999876 568999999999999999999998               7764 9999999988


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+...     .++||+|++|.. .....+++.+.+.|++||++++..
T Consensus       124 ~~~~~-----~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAER-----HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHS-----TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhc-----cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            76543     358999999874 334678999999999999988864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.43  E-value=2.6e-13  Score=114.03  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      .+..++...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++...    .+++++.+|+.+..  +  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            4555555567889999999999999999986 2 23999999999999999886532    36999999987632  1  


Q ss_pred             CCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                        ..++||+|++...   ..+...+++++.++|+|||.+++..
T Consensus       104 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence              1478999998765   3356789999999999999999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.43  E-value=1.8e-12  Score=115.96  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|+++++..++.++++++.+|+.+. +       ...
T Consensus       187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~  256 (359)
T 1x19_A          187 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-------YPE  256 (359)
T ss_dssp             CCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C-------CCC
T ss_pred             CCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C-------CCC
Confidence            345678999999999999999999986 789999999 999999999999888888899999999764 1       133


Q ss_pred             eEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          196 YDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       196 fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +|+|++.....     ....+++++.+.|+|||.+++.+...+
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            49999876532     256789999999999999988776554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.42  E-value=2.9e-13  Score=114.61  Aligned_cols=102  Identities=18%  Similarity=0.186  Sum_probs=83.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++.+++.+++++...   .+++++++|+.+..  +    ..++||
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~--~----~~~~fD  160 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT--L----PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC--C----CSSCEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCC--C----CCCCeE
Confidence            457899999999999999998874  358999999999999999887543   46999999987631  1    147899


Q ss_pred             EEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|++....     .+...+++++.++|+|||++++.+.
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99987652     3356789999999999999999764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.42  E-value=5.8e-13  Score=111.90  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.    .+++++|+++.+++.|++++...+  .+++++.+|+.+..  .     .++||+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~-----~~~fD~   99 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L-----PEPVDA   99 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C-----SSCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C-----CCCcCE
Confidence            4579999999999999988875    599999999999999999987766  36899999987631  1     368999


Q ss_pred             EEEcC-C------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDA-E------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~-~------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++.. .      ......+++.+.++|+|||.++++
T Consensus       100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99865 2      134567899999999999999984

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.42  E-value=5.7e-13  Score=119.59  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+.+        +..|
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  249 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVTA  249 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC--------CCCC
Confidence            34678999999999999999999986 689999999 9999999999999888878999999987522        2359


Q ss_pred             EEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+|++.....     ....+++++.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999876532     234789999999999999988766

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.41  E-value=1.4e-12  Score=113.37  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHH----HCCCCcEE--EEEeCChhHHHHHHHHHHHh-CCCCCEE--EEEcChhHHHHHHHh
Q 024097          119 GAQRCIEVGVYTGYSSLAIAL----VLPESGCL--VACERDARSLEVAKKYYERA-GVSHKVK--IKHGLAADSLKALIL  189 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~----~~~~~~~v--~~iD~s~~~~~~a~~~~~~~-~~~~~v~--~~~~d~~~~~~~~~~  189 (272)
                      ++.+|||||||+|..+..+++    ..+ +.+|  +++|+|++|++.|++++... ++. +++  +..+++.+.......
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhcc
Confidence            456999999999987765443    333 5544  99999999999999988653 333 344  456666543321110


Q ss_pred             CCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...+++||+|++...   ..+....++++.++|||||.+++..
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            012578999998765   4457789999999999999999853

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.41  E-value=4.1e-13  Score=119.51  Aligned_cols=109  Identities=19%  Similarity=0.229  Sum_probs=87.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  188 (272)
                      +++...+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+..  ++++.+|..+..    
T Consensus       186 ~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~----  258 (343)
T 2pjd_A          186 QLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV----  258 (343)
T ss_dssp             HHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC----
T ss_pred             HHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc----
Confidence            3333334334567999999999999999999865 579999999999999999999887765  577888886532    


Q ss_pred             hCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                          .++||+|+++.+..        ....+++++.++|+|||.+++.
T Consensus       259 ----~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          259 ----KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             ----CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ----cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence                47899999986533        2467899999999999999984

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.41  E-value=2.1e-13  Score=116.56  Aligned_cols=112  Identities=19%  Similarity=0.108  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..+...+.+...+...++.+|||||||+|..+..+++   ++.+|+++|+++.+++.++++.       +++++++|+.+
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~   87 (261)
T 3ege_A           18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAEN   87 (261)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTS
T ss_pred             ccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhh
Confidence            3455666666666666789999999999999999997   3689999999999988776543       69999999965


Q ss_pred             HHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      . +.     .+++||+|++...   ..+...+++++.++|| ||.+++.+..
T Consensus        88 ~-~~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           88 L-AL-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             C-CS-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             C-CC-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            3 21     1479999998765   3567889999999999 9977776543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.41  E-value=6.2e-13  Score=120.01  Aligned_cols=106  Identities=13%  Similarity=0.157  Sum_probs=90.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-EEEEEcChhHHHH-HHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK-ALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~~~~~~~  195 (272)
                      .++.+|||++||+|..++.+++..+...+|+++|+++.+++.+++|++.+++.++ ++++.+|+.+.+. ..     .++
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-----~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-----GFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-----SSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-----CCC
Confidence            3567999999999999999998764226899999999999999999999999877 9999999988765 43     368


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||+|++|. ......+++.+.++|++||+|++.-
T Consensus       126 fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99999998 3334578999999999999988854

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.41  E-value=1e-12  Score=117.45  Aligned_cols=106  Identities=20%  Similarity=0.201  Sum_probs=89.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+.+        +..
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~  249 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRK  249 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSC
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC--------CCC
Confidence            345678999999999999999999886 689999999 9999999999999888878999999987522        235


Q ss_pred             eEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ||+|++.....     ....+++++.+.|+|||.+++.+..
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            99999876532     2357899999999999999987766

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.40  E-value=3e-13  Score=113.13  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=76.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC-CCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~~f  196 (272)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++      ..+++++++|+.+.++.     . +++|
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~-----~~~~~f  112 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA-----GLGAPF  112 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT-----TCCCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC-----cCCCCE
Confidence            46789999999999999999986   46999999999999999887      23689999999643321     1 4689


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+|++..   +...+++++.++|||||.++
T Consensus       113 D~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          113 GLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             EEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            9999874   34457889999999999999

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.40  E-value=6.3e-13  Score=111.70  Aligned_cols=100  Identities=10%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++.    ...+++++.+|+.+...      .+++||+
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~------~~~~fD~  119 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPF------ENEQFEA  119 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSS------CTTCEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCC------CCCCccE
Confidence            6789999999999999999986   469999999999999998764    23479999999876321      1479999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |++...   ..+...+++++.++|+|||++++....
T Consensus       120 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          120 IMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             EEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            998764   345678899999999999999997643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=2e-12  Score=109.02  Aligned_cols=115  Identities=11%  Similarity=0.029  Sum_probs=85.9

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          108 AQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       108 ~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ...+..+.. ..++.+|||||||+|..+..+++..+   +|+++|+++.+++.+++++   . ..+++++++|+.+....
T Consensus        44 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~-~~~~~~~~~d~~~~~~~  116 (245)
T 3ggd_A           44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---T-AANISYRLLDGLVPEQA  116 (245)
T ss_dssp             HHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---C-CTTEEEEECCTTCHHHH
T ss_pred             HHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---c-ccCceEEECcccccccc
Confidence            344444433 34567999999999999999999754   8999999999999999876   2 23699999999774321


Q ss_pred             H-HhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          187 L-ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       187 ~-~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      . ..  ....||+|++...     ..+...+++++.++|||||++++.+..
T Consensus       117 ~~~~--~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          117 AQIH--SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHH--HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cccc--cccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            1 00  0135999998754     225678999999999999998876554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=8.5e-13  Score=122.46  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=83.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++++|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  +     .++|
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~-----~~~f  225 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PEQV  225 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSCE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c-----CCCe
Confidence            346789999999999999998874 3 56999999998 99999999999999889999999997631  1     3689


Q ss_pred             EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+|+++..     .......+..+.++|+|||++++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998754     13345667778899999999985

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=7.9e-13  Score=109.69  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH----HHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY----YERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~----~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.+.+.    ....++. +++++++|+.+. +.     .
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~-----~   96 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP-----L   96 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS-----C
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC-----C
Confidence            45678999999999999999999875 78999999999988854332    2234443 699999999763 21     1


Q ss_pred             CCceEEEEEcCCc--------cchHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~--------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+. |.|++....        .+...+++++.++|||||.+++.
T Consensus        97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            344 777754421        22367899999999999999984

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=1.4e-12  Score=115.89  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..++. ++  + ..+|+++|+|+.+++.++++++.+++.++++++++|+.+.+         ++||
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~fD  260 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VKGN  260 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CCEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CCCc
Confidence            4778999999999999999 76  3 57999999999999999999999998778999999998753         5899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|++|.+.. ...+++.+.++|+|||++++.....
T Consensus       261 ~Vi~dpP~~-~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          261 RVIMNLPKF-AHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEECCTTT-GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             EEEECCcHh-HHHHHHHHHHHcCCCCEEEEEEeec
Confidence            999986533 3378899999999999999865543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.39  E-value=2.7e-12  Score=112.49  Aligned_cols=108  Identities=11%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC------CCCCEEEEEcChhHHHH--HHHhC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLK--ALILN  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~--~~~~~  190 (272)
                      ++.+|||||||+|..+..+++. + ..+|+++|+++.+++.+++++...+      ...+++++++|+.+...  .+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6679999999999999999874 3 5799999999999999999887652      22369999999976310  010  


Q ss_pred             CCCCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...++||+|++....+       ....+++++.++|+|||++++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            0135899999876542       245889999999999999998644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.38  E-value=1.2e-12  Score=104.88  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=80.0

Q ss_pred             CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ..+....++.. +..  .++.+|||+|||+|..+..+++.   . +|+++|+++.+++.          .++++++++|+
T Consensus         6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~   70 (170)
T 3q87_B            6 PGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADL   70 (170)
T ss_dssp             CCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECST
T ss_pred             cCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECCh
Confidence            34556556555 444  57789999999999999999875   3 99999999999876          34689999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeC
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+..+       .++||+|+++.+..            ....+++.+.+.+ |||.+++..
T Consensus        71 ~~~~~-------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           71 LCSIN-------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTTBC-------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhhcc-------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            76321       37899999976532            2356778888888 999998854

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.38  E-value=1.8e-12  Score=108.60  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..+   +++++|+++.+++.+++++      .+++++.+|+.+...       .++||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-------CCCCc
Confidence            4668999999999999999998743   8999999999999998864      258999999876321       36899


Q ss_pred             EEEEcCC----c---cchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          198 FAFVDAE----K---RMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       198 lV~~d~~----~---~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|++...    .   .....+++++.++|+|||.++++....
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          103 AVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             EEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            9995432    1   345678999999999999999986543

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.37  E-value=5.7e-13  Score=109.85  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=77.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+    + ..+++++|+++.+++.+++++      .+++++.+|+.+..  +    .+++||+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~----~~~~fD~   98 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALP--F----PGESFDV   98 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCC--S----CSSCEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCC--C----CCCcEEE
Confidence            6789999999999988776    2 239999999999999998875      35889999886531  1    1468999


Q ss_pred             EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |++...   ..+...+++++.++|||||.+++....
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           99 VLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            998765   345678999999999999999997544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.37  E-value=1.5e-12  Score=117.14  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=84.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++++|||+| |+|..++.++...+ ..+|+++|+++.+++.|+++++..++. +++++++|+.+.++..    ..++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~----~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY----ALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT----TSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh----ccCCccE
Confidence            578999999 99999999988743 579999999999999999999999987 7999999997733210    0358999


Q ss_pred             EEEcCCc--cchHHHHHHHHccCCCCcEE-EEe
Q 024097          199 AFVDAEK--RMYQEYFELLLQLIRVGGII-VID  228 (272)
Q Consensus       199 V~~d~~~--~~~~~~l~~~~~lLkpgG~l-vi~  228 (272)
                      |+++.+.  .....+++.+.+.|+|||.+ ++.
T Consensus       245 Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          245 FITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            9999753  23567889999999999943 443

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.37  E-value=3.4e-12  Score=110.46  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=76.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeC-ChhHHHHHHHHH-----HHhCCC----CCEEEEEcChhHHHHH
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYY-----ERAGVS----HKVKIKHGLAADSLKA  186 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~~~~~~~  186 (272)
                      ..++++|||||||+|..++.+++. + ..+|+++|+ ++.+++.|++++     +..++.    +++++...+..+....
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence            346789999999999999998875 3 359999999 899999999999     555554    4688886554321111


Q ss_pred             HHhCCCCCceEEEEE-cCC--ccchHHHHHHHHccCC---C--CcEEEE
Q 024097          187 LILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLIR---V--GGIIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~-d~~--~~~~~~~l~~~~~lLk---p--gG~lvi  227 (272)
                      +......++||+|++ +..  ......+++.+.++|+   |  ||.+++
T Consensus       155 ~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          155 LQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             HHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            110001478999997 432  4457788999999999   9  997665

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.37  E-value=1.3e-12  Score=103.87  Aligned_cols=101  Identities=19%  Similarity=0.217  Sum_probs=75.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~  194 (272)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +++.           .+++++.+|+.+..  ..+......+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            35678999999999999999999865468999999999 6532           46999999987642  0110000147


Q ss_pred             ceEEEEEcCCcc---ch-----------HHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKR---MY-----------QEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~---~~-----------~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||+|+++....   ..           ..+++.+.++|+|||.+++..
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            899999976522   11           578999999999999999854

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.37  E-value=1.9e-13  Score=116.35  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----------------------------  169 (272)
                      .++.+|||||||+|..+..+++...  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567999999999999998886532  4899999999999999988754321                            


Q ss_pred             CCCE-EEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          170 SHKV-KIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       170 ~~~v-~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..++ +++.+|+.+..+..  ....++||+|++.....       ....+++++.++|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG--GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC--ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 89999987642211  00127899999876533       5678899999999999999997644

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.37  E-value=3e-12  Score=115.26  Aligned_cols=117  Identities=22%  Similarity=0.245  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+..+..+..+. ..++.+|||+|||+|..++.++...+ .++|+|+|+++.+++.|+++++.+++.++++++++|+.
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            45677777777777 67788999999999999999998754 45899999999999999999999999778999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +....      .++||+|+++.+..           .+..+++.+.++| +|+.+++
T Consensus       279 ~~~~~------~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          279 QLSQY------VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GGGGT------CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             hCCcc------cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            75321      47899999986511           1466778888888 4444444

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.36  E-value=1.5e-12  Score=111.46  Aligned_cols=106  Identities=15%  Similarity=0.069  Sum_probs=76.6

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH-HHHHHH
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALI  188 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  188 (272)
                      .+...+...++.+|||||||+|..+..+++.   +.+|+++|+|+.|++.|++++...    .+.....+... ....+ 
T Consensus        36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~-  107 (261)
T 3iv6_A           36 NDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKEL-  107 (261)
T ss_dssp             HHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGG-
T ss_pred             HHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccccc-
Confidence            3334445567889999999999999999985   469999999999999999987543    12222222211 00111 


Q ss_pred             hCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEe
Q 024097          189 LNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                          .++||+|+++...     ......+..+.++| |||.+++.
T Consensus       108 ----~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          108 ----AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             ----TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             ----CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence                4689999998653     23556888999999 99999986

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.36  E-value=1.1e-11  Score=111.46  Aligned_cols=123  Identities=17%  Similarity=0.064  Sum_probs=89.2

Q ss_pred             CCCCCCHHHHHHHH-HHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097           99 SQMQVSPDQAQLLA-MLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus        99 ~~~~~~~~~~~~l~-~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      +..++++...+.+. .++...  .+.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|++|++.+++. ++++
T Consensus       190 ~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~  265 (369)
T 3bt7_A          190 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NVQI  265 (369)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEE
T ss_pred             CeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEE
Confidence            34455666544443 333322  3578999999999999999875   359999999999999999999998885 6999


Q ss_pred             EEcChhHHHHHHHhCCC----------CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          176 KHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~~~----------~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.+|+.+.++.+...++          ..+||+|++|.+....   .+.+.+.|+++|.|++-
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyv  325 (369)
T 3bt7_A          266 IRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYI  325 (369)
T ss_dssp             ECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEE
T ss_pred             EECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEE
Confidence            99999887665421100          0379999999875432   33455556688888765

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.35  E-value=1.8e-11  Score=100.59  Aligned_cols=112  Identities=15%  Similarity=0.153  Sum_probs=86.3

Q ss_pred             CCCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+.....+...+.   ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++..++  +++++++
T Consensus        29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~  104 (207)
T 1wy7_A           29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG  104 (207)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES
T ss_pred             cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEEC
Confidence            345555555554443   335789999999999999999986 2 35899999999999999999988776  6999999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEe
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+.+.         +++||+|+++.+.     .....+++.+.+++  |+++++.
T Consensus       105 d~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          105 DVSEF---------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             CGGGC---------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             chHHc---------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            99763         3589999998762     23457888888888  6665543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.35  E-value=6.4e-13  Score=109.39  Aligned_cols=102  Identities=9%  Similarity=0.091  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++...  .+|+++|+++.+++.++++...   ..+++++.+|+.+. + +    .+++||
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~----~~~~fD  109 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F----PSASFD  109 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S----CSSCEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C----CCCccc
Confidence            4667999999999999999998632  3899999999999999988753   24699999998763 1 1    147899


Q ss_pred             EEEEcCCc------------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~------------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|++....                  .....+++++.++|+|||.+++...
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            99975431                  2346789999999999999998643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=3.6e-12  Score=103.01  Aligned_cols=105  Identities=11%  Similarity=0.135  Sum_probs=83.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..++..++  .++.+|||||||+|..+..+++.   +.+++++|+++.+++.+++++      .+++++.+|+.+..  +
T Consensus        37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~--~  103 (195)
T 3cgg_A           37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ--I  103 (195)
T ss_dssp             HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC--C
T ss_pred             HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC--C
Confidence            45555553  46789999999999999999986   469999999999999998875      24889999987631  1


Q ss_pred             HhCCCCCceEEEEEcC-Cc-----cchHHHHHHHHccCCCCcEEEEeC
Q 024097          188 ILNGEASSYDFAFVDA-EK-----RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~-~~-----~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                          ..++||+|++.. ..     .....+++.+.++|+|||.+++..
T Consensus       104 ----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          104 ----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             ----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence                147899999973 22     334778999999999999999864

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.34  E-value=2.5e-12  Score=109.71  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++..     ..  ++.+|+.+..  +    .+++||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~--~----~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLP--F----PSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCC--C----CCCCEEE
Confidence            6789999999999999999975   4699999999999999988752     12  7888886531  1    1478999


Q ss_pred             EEEcCC----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAE----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++...    ..+...+++++.++|+|||.+++..
T Consensus       118 v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          118 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            998654    2447789999999999999999864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.33  E-value=1e-11  Score=113.47  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             CCCCCCHHHHHHH-HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097           99 SQMQVSPDQAQLL-AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus        99 ~~~~~~~~~~~~l-~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      ...+.++...+.+ ..+....++.+|||+|||+|..++.+++.   ..+|+++|+++++++.|+++++.+++.  ++++.
T Consensus       269 ~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~  343 (425)
T 2jjq_A          269 SFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEV  343 (425)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEE
T ss_pred             cccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEE
Confidence            4456666555444 33333556789999999999999999985   459999999999999999999988875  99999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+.+.+        ..+||+|++|.+..... .+++.+. .|+|||++++.
T Consensus       344 ~d~~~~~--------~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          344 ASDREVS--------VKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             CCTTTCC--------CTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEE
T ss_pred             CChHHcC--------ccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEE
Confidence            9997753        13799999998754433 3555554 58999999985

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.32  E-value=4e-13  Score=115.14  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----------------------------  169 (272)
                      .++.+|||||||+|..+..++...  ..+|+++|+|+.+++.|+++++....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            456799999999998777655431  23799999999999999987754310                            


Q ss_pred             CCCEE-EEEcChhHHHHHHHhCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          170 SHKVK-IKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       170 ~~~v~-~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+++ ++++|+.+..+.  .....++||+|++...       ..+....++++.++|||||.|++....
T Consensus       132 ~~~i~~~~~~D~~~~~~~--~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPL--APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTT--TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCC--CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            01244 888888763210  0001368999998643       234567899999999999999998654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.32  E-value=2.8e-11  Score=106.13  Aligned_cols=124  Identities=18%  Similarity=0.131  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      ......++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+. +++++.+|+.+.
T Consensus        87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~  165 (309)
T 2b9e_A           87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAV  165 (309)
T ss_dssp             CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGS
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhc
Confidence            3344455556666678899999999999999999998765789999999999999999999999985 599999999764


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc--------------------c-------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKR--------------------M-------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~--------------------~-------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .....   ..++||.|++|.+..                    +       ...+++.+.++++ ||+|+...+..
T Consensus       166 ~~~~~---~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          166 SPSDP---RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             CTTCG---GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             Ccccc---ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            32100   015799999986410                    0       1235667777886 99988765543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.32  E-value=2.3e-12  Score=111.62  Aligned_cols=110  Identities=10%  Similarity=0.024  Sum_probs=75.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-----------------CCC-----------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----------------GVS-----------  170 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------------~~~-----------  170 (272)
                      ++.+|||||||+|..+..++.. + ..+|+++|+|+.+++.|+++++..                 +..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6789999999999954433332 2 469999999999999998865421                 100           


Q ss_pred             -CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          171 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       171 -~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                       ..++++.+|+.+.++.......+++||+|++....       .+...+++++.++|||||.|++...
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             01566777776522210000113579999987652       2467889999999999999999753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.32  E-value=4e-12  Score=109.56  Aligned_cols=106  Identities=17%  Similarity=0.222  Sum_probs=77.8

Q ss_pred             CCCEEEEEcCccCH----HHHHHHHHCCC---CcEEEEEeCChhHHHHHHHHHH--------------H---------hC
Q 024097          119 GAQRCIEVGVYTGY----SSLAIALVLPE---SGCLVACERDARSLEVAKKYYE--------------R---------AG  168 (272)
Q Consensus       119 ~~~~VLEiG~G~G~----~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~--------------~---------~~  168 (272)
                      ++.+|+|+|||+|.    .++.+++.++.   +.+|+|+|+|+++++.|+++.-              +         .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    55666666442   3599999999999999998641              0         00


Q ss_pred             -------CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeC
Q 024097          169 -------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       169 -------~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                             +.++|+|.++|..+. + +.   ..++||+|++....     ......++.+.+.|+|||++++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-~-~~---~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-Q-YN---VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-S-CC---CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCC-C-CC---cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence                   013699999998762 1 10   03689999996542     234678999999999999999853

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.30  E-value=2e-11  Score=99.89  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       103 ~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ........+...+.   ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++.      +++++++|
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d  103 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVAD  103 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECc
Confidence            34444444444443   236789999999999999999986 3 4589999999999999998864      58999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.+.         +++||+|+++.+..     ....+++.+.+.+  |+++++.
T Consensus       104 ~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          104 VSEI---------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             GGGC---------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             HHHC---------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            9763         36899999987622     2346788888887  6655554

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.30  E-value=6.8e-12  Score=107.55  Aligned_cols=166  Identities=12%  Similarity=0.062  Sum_probs=101.3

Q ss_pred             CCCChhHHHHHHhccCChHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHH----HHhhcCCCEEEEEcCcc--CHHHHHHH
Q 024097           66 ISVTPPLYDYILRNVREPEILRQLREETAG-MRGSQMQVSPDQAQLLAM----LVQILGAQRCIEVGVYT--GYSSLAIA  138 (272)
Q Consensus        66 ~~~~~~l~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~--G~~~~~la  138 (272)
                      .+..-++++|+..-....+.=+++-+.... .+.. ..+...-..|+..    +.......+|||||||+  +..+..++
T Consensus        21 ~p~~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P~~-~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la   99 (277)
T 3giw_A           21 SAHSARIYDYIIGGKDYYPADKEAGDAMSREWPAL-PVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIA   99 (277)
T ss_dssp             SCCHHHHHHHHTTCSCCCHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHH
T ss_pred             CCCcchhheeecCCccCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHH
Confidence            345568999988755444433333333322 2111 1111222334433    33334557999999997  44556666


Q ss_pred             HHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE-----EEEEcCCcc---c---
Q 024097          139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD-----FAFVDAEKR---M---  207 (272)
Q Consensus       139 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD-----lV~~d~~~~---~---  207 (272)
                      +...++++|+++|.|+.|++.|++++...+ ..+++++++|+.+....+......+.||     .|++....+   +   
T Consensus       100 ~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~  178 (277)
T 3giw_A          100 QSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDD  178 (277)
T ss_dssp             HHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGC
T ss_pred             HHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhh
Confidence            554348899999999999999999885432 2479999999987532110000013344     455554421   2   


Q ss_pred             hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          208 YQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       208 ~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ....+..+.+.|+|||+|++......
T Consensus       179 p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          179 AVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             HHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            35789999999999999999876543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.30  E-value=1.1e-11  Score=107.31  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--C--CCCCEEEEEcChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..++++||-||.|.|..+..+++..+ ..+|+.+|++++.++.+++.+...  +  -..|++++.+|+.+.+...     
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~-----  154 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-----  154 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS-----
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc-----
Confidence            45789999999999999999998644 579999999999999999987642  2  1468999999999876432     


Q ss_pred             CCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       155 ~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            57899999986521       2467999999999999999975

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.30  E-value=2.9e-12  Score=109.63  Aligned_cols=95  Identities=19%  Similarity=0.198  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.|+++.      .++.+..+|+.+..  +    .+++||
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~----~~~~fD  150 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP--F----SDTSMD  150 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS--B----CTTCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCC--C----CCCcee
Confidence            4678999999999999999999875 679999999999999998764      25789999886531  1    146899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++....    ..++++.++|+|||.+++..
T Consensus       151 ~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          151 AIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence            99986543    25788999999999999864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.30  E-value=1e-11  Score=101.43  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=71.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------------  184 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------  184 (272)
                      .++.+|||+|||+|..+..+++.+++ +++|+++|+++..           .. .+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999998863 5899999999842           12 35899999886532            


Q ss_pred             -------HHHHhCCCCCceEEEEEcCCccc-------h-------HHHHHHHHccCCCCcEEEEe
Q 024097          185 -------KALILNGEASSYDFAFVDAEKRM-------Y-------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       185 -------~~~~~~~~~~~fDlV~~d~~~~~-------~-------~~~l~~~~~lLkpgG~lvi~  228 (272)
                             ..+......++||+|+++.....       .       ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   01000001468999999764221       1       23678889999999999985

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.27  E-value=2.2e-11  Score=105.67  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+...+.+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus        11 l~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~   87 (285)
T 1zq9_A           11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   87 (285)
T ss_dssp             ECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEccee
Confidence            456666666666666667889999999999999999987   35999999999999999999876666557999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHH
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQE  210 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~  210 (272)
                      +..        ..+||+|+++.+......
T Consensus        88 ~~~--------~~~fD~vv~nlpy~~~~~  108 (285)
T 1zq9_A           88 KTD--------LPFFDTCVANLPYQISSP  108 (285)
T ss_dssp             TSC--------CCCCSEEEEECCGGGHHH
T ss_pred             ccc--------chhhcEEEEecCcccchH
Confidence            631        247999999876544333

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.26  E-value=1.8e-11  Score=100.02  Aligned_cols=96  Identities=14%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHH---HhCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKAL---ILNGE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~---~~~~~  192 (272)
                      .++.+|||+|||+|.++..+++.   +++|+++|+++..           .. .+++++++|+.+.  ...+   .....
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence            46789999999999999999986   5799999999852           12 3699999998652  1111   10000


Q ss_pred             CCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++||+|++|....              .....++.+.++|||||.+++.
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            14899999986421              1235677788999999999975

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.26  E-value=5e-12  Score=115.15  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|+++    +......+...+..+.++..     +++||
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~-----~~~fD  173 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT-----EGPAN  173 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH-----HCCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC-----CCCEE
Confidence            46789999999999999999975   46999999999999998875    33321112212222222221     47999


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++...   ..+...+++++.++|||||++++..
T Consensus       174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998766   3457789999999999999999974

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.25  E-value=8.9e-12  Score=103.50  Aligned_cols=99  Identities=23%  Similarity=0.357  Sum_probs=77.8

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ..+....++.+|||||||+|..+..+++.       +++|+++.+++.++++        +++++.+|+.+. + +    
T Consensus        40 ~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~----   98 (219)
T 1vlm_A           40 QAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L----   98 (219)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S----
T ss_pred             HHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C----
Confidence            33444445889999999999999887642       9999999999998875        478899988653 1 1    


Q ss_pred             CCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          192 EASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       192 ~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..++||+|++...   ..+...+++.+.++|+|||.+++....
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            1468999998765   345678999999999999999997544

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.25  E-value=1.6e-11  Score=109.21  Aligned_cols=117  Identities=12%  Similarity=0.041  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCC----cEEEEEeCChhHHHHHHHHHHHhCCCCCEE
Q 024097          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPES----GCLVACERDARSLEVAKKYYERAGVSHKVK  174 (272)
Q Consensus       103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~  174 (272)
                      .......++..++.    ..++.+|||+|||+|..+..+++.++..    .+++|+|+++.+++.|+.++...+.  ++.
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~  187 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  187 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cce
Confidence            44556666555553    2345799999999999999999887532    7899999999999999999988887  489


Q ss_pred             EEEcChhHHHHHHHhCCCCCceEEEEEcCCccc---------------------hHHHHHHHHccCCCCcEEEEe
Q 024097          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       175 ~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~---------------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++|+.+...       .++||+|+.+.+...                     ...+++.+.+.|+|||++++-
T Consensus       188 i~~~D~l~~~~-------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          188 LLHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EEESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCCCccc-------cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            99999876321       468999999876211                     125799999999999988774

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.25  E-value=7e-12  Score=111.66  Aligned_cols=106  Identities=12%  Similarity=0.069  Sum_probs=82.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.++.  +++.+..+..++++++.+|+.+.   +     + +|
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~-----p-~~  248 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V-----P-HA  248 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C-----C-CC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C-----C-CC
Confidence            34577999999999999999999987 789999999 44444  33344445667899999999631   1     3 89


Q ss_pred             EEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       197 DlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      |+|++.....     ....+++++.+.|||||.|++.+...+..
T Consensus       249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~  292 (348)
T 3lst_A          249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG  292 (348)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSS
T ss_pred             cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence            9999866532     23578999999999999999988766543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.25  E-value=3.1e-11  Score=110.70  Aligned_cols=121  Identities=13%  Similarity=0.213  Sum_probs=89.8

Q ss_pred             CCCCHH-HHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE
Q 024097          101 MQVSPD-QAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (272)
Q Consensus       101 ~~~~~~-~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~  176 (272)
                      .+.++. ...++..++.   ..++.+|||+|||+|..++.+++.   ..+|+++|+++++++.|+++++.+++. +++|+
T Consensus       264 ~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~  339 (433)
T 1uwv_A          264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFY  339 (433)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             cccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEE
Confidence            344444 3334444433   345689999999999999999986   469999999999999999999988886 79999


Q ss_pred             EcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          177 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       177 ~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+.+.++.+..  ..++||+|++|.+.......++.+.+ ++|++++.+.
T Consensus       340 ~~d~~~~l~~~~~--~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          340 HENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             ECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred             ECCHHHHhhhhhh--hcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEE
Confidence            9999774322100  13589999999886655566666554 6898888774

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.23  E-value=7.3e-12  Score=103.97  Aligned_cols=97  Identities=15%  Similarity=0.082  Sum_probs=77.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++. +  .+++++|+++.+++.++++.        .+++.+|+.+....+    .+++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~----~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY----EEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS----CTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC----CCCccC
Confidence            46789999999999999999986 3  79999999999999887653        267888886421111    247899


Q ss_pred             EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++...   ..+...+++++.++|+|||.+++..
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            9998765   2345788999999999999999864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.22  E-value=2.7e-12  Score=108.10  Aligned_cols=99  Identities=13%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHH-HHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSL-KALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~-~~~~~~~~~~~  195 (272)
                      .++++|||||||+|..+..+++. + ..+|+|+|+++++++.++++..      ++.... .+..... ..+    +...
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~----~~~~  103 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF----EQGR  103 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC----CSCC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc----CcCC
Confidence            35679999999999999999986 2 3599999999999998766432      232221 1221110 011    0123


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||.+.+|........++.++.++|||||.+++-
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            566666665555577899999999999999883

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.22  E-value=4.2e-11  Score=97.32  Aligned_cols=100  Identities=10%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCC--------cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE-EcChhHHHH--H
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPES--------GCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLK--A  186 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~--------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~--~  186 (272)
                      .++.+|||||||+|..+..+++.++..        ++|+++|+++..           .. .+++++ .+|+.+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            457899999999999999999987633        799999999842           12 358888 888765321  1


Q ss_pred             HHhCCCCCceEEEEEcCCcc-------ch-------HHHHHHHHccCCCCcEEEEeC
Q 024097          187 LILNGEASSYDFAFVDAEKR-------MY-------QEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~-------~~-------~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +....++++||+|+++....       +.       ..+++.+.++|+|||.+++..
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            11101135899999875321       11       367888999999999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.22  E-value=3e-12  Score=110.97  Aligned_cols=98  Identities=14%  Similarity=0.070  Sum_probs=72.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE-EcChhHHHH-HHHhCCCCCce
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLK-ALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~-~~~~~~~~~~f  196 (272)
                      ++++|||||||||.++..+++. + .++|+++|++++|++.+.++      ..++... ..++..... .+    ...+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l----~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF----TEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC----TTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC----CCCCC
Confidence            5679999999999999999885 2 46999999999999875432      1234333 233332111 11    12459


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|++|.........+.++.++|+|||.+++-
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            99999988777788999999999999999883

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.21  E-value=1.2e-10  Score=98.85  Aligned_cols=142  Identities=12%  Similarity=0.121  Sum_probs=98.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHH------CCCCcEEEEEeCChhH------------------------HHHHHH------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALV------LPESGCLVACERDARS------------------------LEVAKK------  162 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~------~~~~~~v~~iD~s~~~------------------------~~~a~~------  162 (272)
                      -+..|+|+|+..|.++..++..      .....+|+++|.-+.+                        .+..++      
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            4669999999999999987753      1235689999932111                        111222      


Q ss_pred             HHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-cchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCc
Q 024097          163 YYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM  240 (272)
Q Consensus       163 ~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~  240 (272)
                      +++..+. .++++++.|++.+.++.+....+..+||+|++|++. ..+..+++.+.++|+|||+|++||+.+++      
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~------  222 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK------  222 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT------
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC------
Confidence            1223454 478999999999999887654445689999999986 45667899999999999999999975322      


Q ss_pred             CCCHhhHHHHHHHHHhhhCCCeEEEEeecCC
Q 024097          241 VNDAKTISIRNFNKNLMEDERVSISMKEVQD  271 (272)
Q Consensus       241 ~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~  271 (272)
                      ++ ...+|+++|.    ...++....+|++.
T Consensus       223 w~-G~~~A~~ef~----~~~~~~i~~~p~~~  248 (257)
T 3tos_A          223 WP-GENIAMRKVL----GLDHAPLRLLPGRP  248 (257)
T ss_dssp             CT-HHHHHHHHHT----CTTSSCCEECTTCS
T ss_pred             Ch-HHHHHHHHHH----hhCCCeEEEccCCC
Confidence            11 2345555554    34456666677654

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.21  E-value=9.8e-11  Score=104.53  Aligned_cols=108  Identities=11%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...+..+|||||||+|..+..++++.| +.+++..|. |++++.|++++...+ .+||+++.+|+.+..        ...
T Consensus       176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~--------~~~  244 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP--------LPE  244 (353)
T ss_dssp             CGGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC--------CCC
T ss_pred             CcccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC--------CCC
Confidence            344667999999999999999999998 789999998 889999998876444 578999999987521        246


Q ss_pred             eEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +|++++.....     ....+++++.+.|+|||.+++.+...+.
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~  288 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE  288 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence            89999865422     3457899999999999999988776543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.20  E-value=2.8e-11  Score=103.34  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC------CCC-----cEEEEEeCCh--------------hHHHHHHHHHHHh------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL------PES-----GCLVACERDA--------------RSLEVAKKYYERA------  167 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~------~~~-----~~v~~iD~s~--------------~~~~~a~~~~~~~------  167 (272)
                      ++.+|||||+|+|+.++.+++.+      .+.     .+|+++|..|              +..+.|+++++..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            45699999999999999987753      222     5899999987              3444667766541      


Q ss_pred             ----CCC---CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------chHHHHHHHHccCCCCcEEEE
Q 024097          168 ----GVS---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       168 ----~~~---~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                          .+.   .+++++.||+.+.++.+... ....||+||+|+...      ...++++.+.++|+|||+|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~-~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS-LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG-GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc-cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                121   35789999999977654110 013799999997421      367899999999999999996

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.20  E-value=5.5e-11  Score=103.81  Aligned_cols=94  Identities=15%  Similarity=0.246  Sum_probs=72.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+...+.+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+. ++++++.+|+.
T Consensus        25 l~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~  100 (299)
T 2h1r_A           25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAI  100 (299)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CC
T ss_pred             ecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchh
Confidence            456666666666666667889999999999999999875   46999999999999999999987776 46999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccc
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRM  207 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~  207 (272)
                      +..        ..+||+|+++.+...
T Consensus       101 ~~~--------~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          101 KTV--------FPKFDVCTANIPYKI  118 (299)
T ss_dssp             SSC--------CCCCSEEEEECCGGG
T ss_pred             hCC--------cccCCEEEEcCCccc
Confidence            631        358999999877443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.17  E-value=4.2e-11  Score=108.97  Aligned_cols=110  Identities=15%  Similarity=0.202  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+...+++..++...++.+|||+|||+|..+..+++..+...+++|+|+++.+++.|          .+++++++|+.
T Consensus        22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~   91 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL   91 (421)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred             eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence            44566777777766554567999999999999999998764367999999999998766          36999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCc--------------cc------------------hHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEK--------------RM------------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~--------------~~------------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+       .++||+|+++.+.              ..                  +..+++.+.++|+|||.+++-
T Consensus        92 ~~~~-------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A           92 LWEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             GCCC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCc-------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence            6421       3689999997541              10                  125688899999999998773

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.16  E-value=1.1e-10  Score=105.71  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-------------------------------------C
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-------------------------------------S  144 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-------------------------------------~  144 (272)
                      .+.+..+..+..+....++..|||.+||+|.+++..+.....                                     .
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            456666666666666667789999999999999888765321                                     1


Q ss_pred             cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-------cchHHHHHHHHc
Q 024097          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQ  217 (272)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-------~~~~~~l~~~~~  217 (272)
                      .+|+|+|+++.+++.|++|++.+|+.++++++++|+.+...       .++||+|+++.+.       .....++..+.+
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence            46999999999999999999999998889999999987432       3689999999773       223344444444


Q ss_pred             cCCC--CcEEEE
Q 024097          218 LIRV--GGIIVI  227 (272)
Q Consensus       218 lLkp--gG~lvi  227 (272)
                      .|++  ||.+.+
T Consensus       337 ~lk~~~g~~~~i  348 (393)
T 3k0b_A          337 VYKRMPTWSVYV  348 (393)
T ss_dssp             HHHTCTTCEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            4443  776655

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.16  E-value=4.2e-11  Score=102.35  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh-------hHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-------RSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .++...+...++.+|||+|||+|..++.+++.   +++|+++|+++       ++++.|+++.+.+++.++++++++|+.
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            34444445556789999999999999999985   46899999999       999999999888777667999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      +.++.+...  .++||+|++|..
T Consensus       150 ~~l~~~~~~--~~~fD~V~~dP~  170 (258)
T 2r6z_A          150 EQMPALVKT--QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHHHH--HCCCSEEEECCC
T ss_pred             HHHHhhhcc--CCCccEEEECCC
Confidence            876654210  168999999864

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.15  E-value=1.6e-10  Score=104.23  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-------------------------------------C
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-------------------------------------S  144 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-------------------------------------~  144 (272)
                      ++.+..+..+..+....++..+||.+||+|.+.+..+.....                                     .
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            455666666666666677889999999999999888765321                                     1


Q ss_pred             cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-------cchHHHHHHHHc
Q 024097          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQ  217 (272)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-------~~~~~~l~~~~~  217 (272)
                      .+|+|+|+++.+++.|++|++.+|+.++++++++|+.+...       ..+||+|+++.+.       .....++..+.+
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence            46999999999999999999999998889999999987432       3589999999772       234455555555


Q ss_pred             cCCC--CcEEEE
Q 024097          218 LIRV--GGIIVI  227 (272)
Q Consensus       218 lLkp--gG~lvi  227 (272)
                      .||+  ||.+.+
T Consensus       330 ~lk~~~g~~~~i  341 (384)
T 3ldg_A          330 TFAPLKTWSQFI  341 (384)
T ss_dssp             HHTTCTTSEEEE
T ss_pred             HHhhCCCcEEEE
Confidence            5554  776654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.15  E-value=8e-11  Score=106.31  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC-------------------------------------CC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP-------------------------------------ES  144 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~-------------------------------------~~  144 (272)
                      .+.+..+..+..+....++.+|||+|||+|.+++.++....                                     ..
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            34555666655565556778999999999999998877532                                     12


Q ss_pred             cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------chHHHHHHHHc
Q 024097          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQ  217 (272)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------~~~~~l~~~~~  217 (272)
                      .+|+|+|+++.+++.|++|+..+++.+++++.++|+.+...       .++||+|+++.+..       ....++..+.+
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~  330 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGY  330 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHH
Confidence            57999999999999999999999998789999999987432       36899999998732       23344555544


Q ss_pred             cCCC--CcEEEE
Q 024097          218 LIRV--GGIIVI  227 (272)
Q Consensus       218 lLkp--gG~lvi  227 (272)
                      .|++  ||.+.+
T Consensus       331 ~lk~~~g~~~~i  342 (385)
T 3ldu_A          331 AFRKLKNWSYYL  342 (385)
T ss_dssp             HHHTSBSCEEEE
T ss_pred             HHhhCCCCEEEE
Confidence            4544  665554

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.13  E-value=5.4e-11  Score=98.23  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ...++..+....++.+|||||||+|..+..++      .+++++|+++.                +++++.+|+.+. + 
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-  110 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-  110 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-
Confidence            34455555555667899999999999887662      58999999987                367788888652 1 


Q ss_pred             HHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +    .+++||+|++...  ..+...+++++.++|+|||.+++.+..
T Consensus       111 ~----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          111 L----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             C----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             C----CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            1    2468999998654  345678999999999999999997543

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.13  E-value=5.2e-11  Score=106.89  Aligned_cols=100  Identities=15%  Similarity=0.116  Sum_probs=79.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++       ..+++++.+|+.+..        +.. |
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~--------p~~-D  263 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFDGV--------PKG-D  263 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-S
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCCCC--------CCC-C
Confidence            3468999999999999999999987 789999999 888776653       247999999987521        223 9


Q ss_pred             EEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       198 lV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g~  235 (272)
                      +|++....+     ....+++++.+.|+|||.|++.+...+..
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  306 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPS  306 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence            999866533     23578999999999999999988776543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.13  E-value=4.2e-10  Score=98.18  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=71.2

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +...++.+|||+|||+|..+..+++.++ +++|+++|+|+.+++.|+++++..+  ++++++++|+.+....+...+ .+
T Consensus        22 L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g-~~   97 (301)
T 1m6y_A           22 LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG-IE   97 (301)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT-CS
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcC-CC
Confidence            3445678999999999999999999986 7899999999999999999998776  579999999876533222111 25


Q ss_pred             ceEEEEEcCCcc
Q 024097          195 SYDFAFVDAEKR  206 (272)
Q Consensus       195 ~fDlV~~d~~~~  206 (272)
                      +||.|++|.+..
T Consensus        98 ~~D~Vl~D~gvS  109 (301)
T 1m6y_A           98 KVDGILMDLGVS  109 (301)
T ss_dssp             CEEEEEEECSCC
T ss_pred             CCCEEEEcCccc
Confidence            899999987643

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.13  E-value=8.6e-11  Score=105.35  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=79.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++       ..+++++.+|+.+..        +.. 
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~-  260 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKEV--------PSG-  260 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCCC--------CCC-
Confidence            34568999999999999999999987 789999999 888776653       247999999987621        223 


Q ss_pred             EEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          197 DFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      |+|++....+     ....+++++.+.|+|||.+++.+...+.
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999866533     3457899999999999999998877654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.12  E-value=5.3e-10  Score=97.21  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=77.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+...+.+...+...++.+|||||||+|..+..+++.   ..+|+++|+++++++.+++++..  . ++++++++|+.
T Consensus        33 L~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD~l  106 (295)
T 3gru_A           33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGDAL  106 (295)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESCTT
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECchh
Confidence            566777777777777778889999999999999999987   46999999999999999999863  2 36999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHH
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEY  211 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~  211 (272)
                      +....      ..+||.|+.+.+.......
T Consensus       107 ~~~~~------~~~fD~Iv~NlPy~is~pi  130 (295)
T 3gru_A          107 KVDLN------KLDFNKVVANLPYQISSPI  130 (295)
T ss_dssp             TSCGG------GSCCSEEEEECCGGGHHHH
T ss_pred             hCCcc------cCCccEEEEeCcccccHHH
Confidence            74211      2579999988764443333

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.09  E-value=2.3e-10  Score=108.40  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..||+.   +++|||||.++.+++.|+......+.. ++++.++++.+.....    ++++||
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD  136 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL----EEGEFD  136 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC----CTTSCS
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc----cCCCcc
Confidence            36789999999999999999985   689999999999999999988777644 4999999998765432    247899


Q ss_pred             EEEEcCCccchH-----HHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQ-----EYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~-----~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|++-...++..     ..+..+.+.|+++|...+-
T Consensus       137 ~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~  172 (569)
T 4azs_A          137 LAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVIL  172 (569)
T ss_dssp             EEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred             EEEECcchhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence            999876543321     1233345556776655443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.09  E-value=1.1e-10  Score=98.77  Aligned_cols=102  Identities=9%  Similarity=0.014  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..+.+|||||||+|-+++.++...+ ..+|+++|+++.+++.+++++..+|+.  .++.+.|.....+       .++||
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p-------~~~~D  200 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL-------DEPAD  200 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC-------CSCCS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC-------CCCcc
Confidence            4578999999999999999887554 789999999999999999999998875  7888888865332       57899


Q ss_pred             EEEEcCCccc-----hHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~~~-----~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++++.-..+.     ....+ .+...|+++|++|--+.
T Consensus       201 vaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             EEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             hHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            9998655322     22345 78899999999997766

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.09  E-value=1e-10  Score=107.53  Aligned_cols=119  Identities=9%  Similarity=0.076  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC------------CCcEEEEEeCChhHHHHHHHHHHHhCC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAGV  169 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~~~  169 (272)
                      -..+...+++..++...++.+|+|.|||+|.....+++.+.            ...+++|+|+++.+++.|+.++...+.
T Consensus       154 yTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~  233 (445)
T 2okc_A          154 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  233 (445)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            45667777888777766778999999999999999887641            135799999999999999999988887


Q ss_pred             CC-CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccc--------------------hHHHHHHHHccCCCCcEEEE
Q 024097          170 SH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       170 ~~-~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~--------------------~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .. ++.+.++|++....       ..+||+|+.+.+...                    ...+++.+.++|+|||.+++
T Consensus       234 ~~~~~~i~~gD~l~~~~-------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          234 GTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCCCCEeeCCCCCCcc-------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            53 57889999876321       258999999865211                    14789999999999998876

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.08  E-value=6.8e-11  Score=106.20  Aligned_cols=99  Identities=15%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++      . .+++++.+|+.+.   +     +. ||
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-----~~-~D  269 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V-----PQ-GD  269 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C-----CC-EE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C-----CC-CC
Confidence            3568999999999999999999986 679999999 888877654      1 3599999999762   1     23 99


Q ss_pred             EEEEcCCcc---c--hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          198 FAFVDAEKR---M--YQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       198 lV~~d~~~~---~--~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +|++....+   +  ...+++++.+.|+|||.+++.+...+.
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  311 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE  311 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999876533   2  237899999999999999998766543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.06  E-value=1.6e-10  Score=103.03  Aligned_cols=100  Identities=14%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      . .+++++.+|+.+.   +      ..|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~------p~~  247 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTS---I------PNA  247 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTC---C------CCC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCC---C------CCc
Confidence            34568999999999999999999987 679999999 998887764      1 2499999998652   1      249


Q ss_pred             EEEEEcCCcc---c--hHHHHHHHHccCCC---CcEEEEeCCCCCC
Q 024097          197 DFAFVDAEKR---M--YQEYFELLLQLIRV---GGIIVIDNVLWHG  234 (272)
Q Consensus       197 DlV~~d~~~~---~--~~~~l~~~~~lLkp---gG~lvi~d~~~~g  234 (272)
                      |+|++....+   +  ...+++++.+.|+|   ||.+++.+..++.
T Consensus       248 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~  293 (352)
T 1fp2_A          248 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK  293 (352)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred             cEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence            9999876532   2  23789999999999   9999998776543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.05  E-value=5.7e-10  Score=93.48  Aligned_cols=102  Identities=11%  Similarity=0.013  Sum_probs=79.0

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .....++.+|||||||+|.+++.++   + ..+|+++|+++.+++.+++++...+.  +.++..+|.....+       .
T Consensus       100 i~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~-------~  166 (253)
T 3frh_A          100 IFSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP-------A  166 (253)
T ss_dssp             HTSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC-------C
T ss_pred             HhcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC-------C
Confidence            3333568899999999999999877   3 78999999999999999999988774  58899998876432       5


Q ss_pred             CceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ++||+|++.-..+     .....+ .+...|+++|++|--.
T Consensus       167 ~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          167 EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            7999998763311     112233 6777899999988765

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.05  E-value=4.6e-10  Score=101.59  Aligned_cols=77  Identities=16%  Similarity=0.153  Sum_probs=66.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      +.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++..  |+ ++++++++|+.+.++...    .++||
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~----~~~fD  165 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK----TFHPD  165 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH----HHCCS
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc----CCCce
Confidence            789999999999999999875   469999999999999999999988  77 579999999988655421    25899


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      +||+|.+
T Consensus       166 vV~lDPP  172 (410)
T 3ll7_A          166 YIYVDPA  172 (410)
T ss_dssp             EEEECCE
T ss_pred             EEEECCC
Confidence            9999865

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.04  E-value=2.5e-09  Score=95.33  Aligned_cols=121  Identities=13%  Similarity=0.087  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-----CCEEEEEcCh
Q 024097          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLA  180 (272)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~  180 (272)
                      ....+...++...++.+|||+.+|.|+-|..+++..+ .+.|+++|+++..++..++++++.+..     .++.+...|+
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence            3455666667778889999999999999999998654 678999999999999999999988753     4689999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccc---------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRM---------------------------YQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~---------------------------~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .......     .+.||.|++|++...                           ...+++.+.++|||||+||..-+..
T Consensus       214 ~~~~~~~-----~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          214 RKWGELE-----GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GGHHHHS-----TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhcchhc-----cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            7754432     478999999976111                           2356778889999999999876543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=99.04  E-value=3.5e-10  Score=107.35  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             CCEEEEEcCccCHHHHHHH---HHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIA---LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la---~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ...|||+|||+|..+...+   +......+|++||.|+ +...+++..+.+++.++|++++||..+..  +     ++++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L-----PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A-----PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C-----SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C-----Cccc
Confidence            4579999999999854444   3333234799999997 56688899999999999999999998752  1     4799


Q ss_pred             EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+|++.--     .+.....+....+.|||||+++=
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            99996421     33455667777799999998763

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.02  E-value=9e-11  Score=100.14  Aligned_cols=106  Identities=12%  Similarity=0.137  Sum_probs=74.1

Q ss_pred             HHHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--------CCCCEEEEEcC
Q 024097          110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------VSHKVKIKHGL  179 (272)
Q Consensus       110 ~l~~l~~~~~~--~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--------~~~~v~~~~~d  179 (272)
                      .+...+...++  .+|||+|||+|..++.+++.   +++|+++|+++.+++.++++++...        +.++++++++|
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            33444444566  89999999999999999987   4689999999999888888776542        32479999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCCCCc
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGG  223 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLkpgG  223 (272)
                      +.+.++.+     .++||+||+|.....  ....+++..+.|++.+
T Consensus       154 ~~~~L~~~-----~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          154 SLTALTDI-----TPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHHSTTC-----SSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred             HHHHHHhC-----cccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence            98876543     347999999976322  1233444445554433

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.01  E-value=1.1e-09  Score=93.31  Aligned_cols=105  Identities=11%  Similarity=0.044  Sum_probs=77.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+...+.+...+...++.+|||||||+|..|..+++.   ..+|+++|+++++++.+++++..   .++++++++|+.
T Consensus        12 L~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~   85 (255)
T 3tqs_A           12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDAL   85 (255)
T ss_dssp             ECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTT
T ss_pred             ccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchH
Confidence            566777777777777778899999999999999999986   36999999999999999998854   347999999998


Q ss_pred             HHH-HHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097          182 DSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       182 ~~~-~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      +.. +.+   ...++|| |+.+.+..-..+.+..+.
T Consensus        86 ~~~~~~~---~~~~~~~-vv~NlPY~is~~il~~ll  117 (255)
T 3tqs_A           86 QFDFSSV---KTDKPLR-VVGNLPYNISTPLLFHLF  117 (255)
T ss_dssp             TCCGGGS---CCSSCEE-EEEECCHHHHHHHHHHHH
T ss_pred             hCCHHHh---ccCCCeE-EEecCCcccCHHHHHHHH
Confidence            742 221   0125688 676665433333443333

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.99  E-value=1.2e-09  Score=102.72  Aligned_cols=121  Identities=7%  Similarity=-0.021  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-----------------CcEEEEEeCChhHHHHHHHHH
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-----------------SGCLVACERDARSLEVAKKYY  164 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-----------------~~~v~~iD~s~~~~~~a~~~~  164 (272)
                      -..+....+|..++...++.+|+|.+||+|.+...+++.+..                 ..+++|+|+++.+++.|+.++
T Consensus       152 yTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl  231 (541)
T 2ar0_A          152 FTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC  231 (541)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHH
Confidence            455667777777776667789999999999999988876431                 137999999999999999998


Q ss_pred             HHhCCCC----CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccc-----------------hHHHHHHHHccCCCCc
Q 024097          165 ERAGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------YQEYFELLLQLIRVGG  223 (272)
Q Consensus       165 ~~~~~~~----~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~-----------------~~~~l~~~~~lLkpgG  223 (272)
                      ...+...    ++.+.++|++......     .++||+|+.+.+...                 ...+++.+.++|+|||
T Consensus       232 ~l~gi~~~~~~~~~I~~gDtL~~~~~~-----~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  306 (541)
T 2ar0_A          232 LLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  306 (541)
T ss_dssp             HTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HHhCCCccccccCCeEeCCCccccccc-----ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence            8777753    2788999987653321     468999999876211                 2368999999999999


Q ss_pred             EEEE
Q 024097          224 IIVI  227 (272)
Q Consensus       224 ~lvi  227 (272)
                      .+++
T Consensus       307 r~a~  310 (541)
T 2ar0_A          307 RAAV  310 (541)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8776

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.98  E-value=7.6e-10  Score=95.94  Aligned_cols=90  Identities=20%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             hcCCCEEEEEcCcc------CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE-EEcChhHHHHHHHh
Q 024097          117 ILGAQRCIEVGVYT------GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI-KHGLAADSLKALIL  189 (272)
Q Consensus       117 ~~~~~~VLEiG~G~------G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~  189 (272)
                      ..++.+|||+|||+      |.  ..+++.++++++|+++|+++.             + .++++ +++|+.+..  +  
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~--  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T--  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c--
Confidence            34678999999955      65  556777776789999999998             1 25888 999997631  1  


Q ss_pred             CCCCCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEeC
Q 024097          190 NGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                         .++||+|+++....              .....++.+.++|||||.+++..
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               36899999974311              13478899999999999999963

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=5.2e-11  Score=102.74  Aligned_cols=99  Identities=6%  Similarity=-0.087  Sum_probs=69.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHH-HHhCCCCCEEEE--EcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  194 (272)
                      .++.+|||+|||+|.++..+++.    ++|+++|+++ +...+++.. .......+++++  ++|+.+. +       ++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~~  147 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E-------PF  147 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C-------CC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C-------CC
Confidence            35679999999999999999975    5899999998 433222110 000111158888  8998762 1       47


Q ss_pred             ceEEEEEcCCc--cc-----h--HHHHHHHHccCCCCc--EEEEeC
Q 024097          195 SYDFAFVDAEK--RM-----Y--QEYFELLLQLIRVGG--IIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~--~~-----~--~~~l~~~~~lLkpgG--~lvi~d  229 (272)
                      +||+|+++...  ..     .  ...++.+.++|+|||  .+++..
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            89999998641  11     1  136788889999999  999853

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.97  E-value=2.8e-09  Score=90.23  Aligned_cols=76  Identities=11%  Similarity=0.068  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.+...+.+...+...++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++..  . ++++++++|+.
T Consensus        13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~-~~v~~~~~D~~   86 (244)
T 1qam_A           13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--H-DNFQVLNKDIL   86 (244)
T ss_dssp             CCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--C-CSEEEECCCGG
T ss_pred             cCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--C-CCeEEEEChHH
Confidence            4556666666555555677899999999999999999874   6999999999999999988743  2 47999999997


Q ss_pred             HH
Q 024097          182 DS  183 (272)
Q Consensus       182 ~~  183 (272)
                      +.
T Consensus        87 ~~   88 (244)
T 1qam_A           87 QF   88 (244)
T ss_dssp             GC
T ss_pred             hC
Confidence            64

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.95  E-value=1.6e-10  Score=101.18  Aligned_cols=96  Identities=10%  Similarity=0.042  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeC----ChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER----DARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~----s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  192 (272)
                      .++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  .+..+ .++++++++ |+.+. +       
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~-------  145 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P-------  145 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C-------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C-------
Confidence            35689999999999999999985    47999999    554332111  11111 136999998 87653 1       


Q ss_pred             CCceEEEEEcCCcc--c----h---HHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR--M----Y---QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~--~----~---~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++||+|++|....  .    .   ...+..+.++|||||.+++.
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36899999986531  1    1   14677788999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=1.3e-09  Score=97.30  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=78.8

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++      . .+++++.+|+.+  + +      ..|
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~------~~~  252 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-I------PSA  252 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-C------CCC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-C------CCc
Confidence            34668999999999999999999987 679999999 788776653      2 359999999876  2 1      359


Q ss_pred             EEEEEcCCcc---c--hHHHHHHHHccCCC---CcEEEEeCCCCC
Q 024097          197 DFAFVDAEKR---M--YQEYFELLLQLIRV---GGIIVIDNVLWH  233 (272)
Q Consensus       197 DlV~~d~~~~---~--~~~~l~~~~~lLkp---gG~lvi~d~~~~  233 (272)
                      |+|++....+   +  ...+++++.+.|+|   ||.+++.+...+
T Consensus       253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            9999876532   2  34889999999999   999998776654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=2.7e-09  Score=91.70  Aligned_cols=103  Identities=16%  Similarity=0.057  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ..+.+...+.+...+...++ +|||||||+|..|..+++.   +.+|+++|+++++++.+++++.    ..+++++++|+
T Consensus        29 fL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~  100 (271)
T 3fut_A           29 FLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDA  100 (271)
T ss_dssp             EECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCG
T ss_pred             ccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECCh
Confidence            35677777777777777777 9999999999999999986   3689999999999999998874    24799999999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      .+....-     ...+|.|+.+.+..-....+..+.
T Consensus       101 l~~~~~~-----~~~~~~iv~NlPy~iss~il~~ll  131 (271)
T 3fut_A          101 LLYPWEE-----VPQGSLLVANLPYHIATPLVTRLL  131 (271)
T ss_dssp             GGSCGGG-----SCTTEEEEEEECSSCCHHHHHHHH
T ss_pred             hhCChhh-----ccCccEEEecCcccccHHHHHHHh
Confidence            8742110     136899998876444334444443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.95  E-value=6.1e-11  Score=101.76  Aligned_cols=99  Identities=11%  Similarity=-0.071  Sum_probs=68.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHH-HHhCCCCCEEEE--EcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  194 (272)
                      .++.+|||||||+|.++..+++.    ++|+++|+++ +...+++.. .......++.++  ++|+.+. +       ++
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~~  139 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P-------VE  139 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C-------CC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C-------CC
Confidence            45679999999999999999875    5899999998 432221110 000011157888  8898763 1       47


Q ss_pred             ceEEEEEcCC--ccc-----h--HHHHHHHHccCCCCc--EEEEeC
Q 024097          195 SYDFAFVDAE--KRM-----Y--QEYFELLLQLIRVGG--IIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~--~~~-----~--~~~l~~~~~lLkpgG--~lvi~d  229 (272)
                      +||+|+++..  ...     .  ...++.+.++|+|||  .+++..
T Consensus       140 ~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          140 RTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            8999999854  111     1  136788889999999  999854

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.94  E-value=2.5e-09  Score=95.31  Aligned_cols=106  Identities=13%  Similarity=0.181  Sum_probs=83.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---CC----CCCEEEEEcChhHHHHHHHhCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV----SHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~----~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ++++||-||.|.|..+..+++. + ..+|+.+|++++.++.+++.+...   .+    .++++++.+|+.+.+....+. 
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH-
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc-
Confidence            5789999999999999999985 4 369999999999999999976421   11    246899999999988654321 


Q ss_pred             CCCceEEEEEcCCc-------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~-------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       .++||+|++|...             --..++++.+.+.|+|||+++..
T Consensus       282 -~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          282 -GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             -TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             -cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence             3689999998531             01357889999999999999975

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.86  E-value=4.8e-09  Score=101.52  Aligned_cols=122  Identities=13%  Similarity=0.115  Sum_probs=90.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---C------------------------------------
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---P------------------------------------  142 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~------------------------------------  142 (272)
                      ++.+..+..+..+....++..|||.+||+|.+.+..+...   +                                    
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4566666666666666677899999999999998877642   1                                    


Q ss_pred             --CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------chHHHHH
Q 024097          143 --ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFE  213 (272)
Q Consensus       143 --~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------~~~~~l~  213 (272)
                        ...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+..+..    ..++||+|+++.+..       ....+++
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL----PKGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC----TTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc----ccCCCCEEEeCCCccccccchhHHHHHHH
Confidence              125799999999999999999999999888999999998742110    123899999997622       2233344


Q ss_pred             H---HHccCCCCcEEEE
Q 024097          214 L---LLQLIRVGGIIVI  227 (272)
Q Consensus       214 ~---~~~lLkpgG~lvi  227 (272)
                      .   ..+.+.|||.+.+
T Consensus       329 ~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHhhCCCCeEEE
Confidence            3   3445568887766

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.86  E-value=2.8e-11  Score=102.55  Aligned_cols=114  Identities=10%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++++.   ..++++++++|+.+
T Consensus        13 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~   86 (245)
T 1yub_A           13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQ   86 (245)
T ss_dssp             CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhh
Confidence            344444555555555677899999999999999999873   699999999999999887764   23479999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccc----hH----------HHH----HHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRM----YQ----------EYF----ELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~----~~----------~~l----~~~~~lLkpgG~lvi~  228 (272)
                      ..  +   ...++| .|+++.+...    ..          .++    +.+.++|+|||.+++.
T Consensus        87 ~~--~---~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           87 FQ--F---PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             TT--C---CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             cC--c---ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence            42  1   002578 6666654211    11          122    5678899999987653

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.86  E-value=1.2e-08  Score=87.99  Aligned_cols=109  Identities=13%  Similarity=0.069  Sum_probs=75.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ..+.+...+.+...+...++.+|||||||+|..+..+++..+. +++|+++|+++++++.++++.     ..+++++++|
T Consensus        24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D   98 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGD   98 (279)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESC
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECC
Confidence            3566777777777777777889999999999999999987652 255999999999999999883     3479999999


Q ss_pred             hhHHH-HHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097          180 AADSL-KALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       180 ~~~~~-~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~  215 (272)
                      +.+.. +.+.... ....+.|+.+.+..-..+++.++
T Consensus        99 ~~~~~~~~~~~~~-~~~~~~vv~NlPY~iss~il~~l  134 (279)
T 3uzu_A           99 ALTFDFGSIARPG-DEPSLRIIGNLPYNISSPLLFHL  134 (279)
T ss_dssp             GGGCCGGGGSCSS-SSCCEEEEEECCHHHHHHHHHHH
T ss_pred             hhcCChhHhcccc-cCCceEEEEccCccccHHHHHHH
Confidence            98742 2221000 00234666666533333344333

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.85  E-value=9.2e-09  Score=97.81  Aligned_cols=106  Identities=10%  Similarity=-0.046  Sum_probs=75.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC---C---------CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL---P---------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~---~---------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      .+.|||||||+|..+...+++.   +         ...+|++||.++.++...+.... +++.++|+++.+|+.+.....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            4689999999999975433322   1         13499999999988766655544 789899999999998863211


Q ss_pred             HhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097          188 ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .. ...++.|+|++.--     .+...+.+..+.+.|||||+++=
T Consensus       489 ~~-~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KD-RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HH-TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             cc-CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            11 12478999997532     23345677777899999998763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.80  E-value=4.7e-09  Score=98.65  Aligned_cols=123  Identities=11%  Similarity=0.088  Sum_probs=93.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC--------------CcEEEEEeCChhHHHHHHHHH
Q 024097           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE--------------SGCLVACERDARSLEVAKKYY  164 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~--------------~~~v~~iD~s~~~~~~a~~~~  164 (272)
                      +..-..+....+|..++...++ +|+|.+||+|.+.+.+++.+..              ..+++|+|+++.+++.|+.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            3445678888888888765444 9999999999998887654320              358999999999999999999


Q ss_pred             HHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccc--------------------------------hHHHH
Q 024097          165 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------------------YQEYF  212 (272)
Q Consensus       165 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~--------------------------------~~~~l  212 (272)
                      ...|+..++.+.++|.+.....     ...+||+|+.+.+...                                ...++
T Consensus       304 ~l~gi~~~i~i~~gDtL~~~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl  378 (544)
T 3khk_A          304 VIRGIDFNFGKKNADSFLDDQH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWM  378 (544)
T ss_dssp             HHTTCCCBCCSSSCCTTTSCSC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHH
T ss_pred             HHhCCCcccceeccchhcCccc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHH
Confidence            8888876665688887653111     1468999999865211                                12588


Q ss_pred             HHHHccCCCCcEEEE
Q 024097          213 ELLLQLIRVGGIIVI  227 (272)
Q Consensus       213 ~~~~~lLkpgG~lvi  227 (272)
                      +.+.++|+|||.+++
T Consensus       379 ~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          379 LHMLYHLAPTGSMAL  393 (544)
T ss_dssp             HHHHHTEEEEEEEEE
T ss_pred             HHHHHHhccCceEEE
Confidence            999999999998665

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.76  E-value=2.3e-08  Score=84.87  Aligned_cols=113  Identities=17%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...+...+.+...+...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++    + ..+++++++|+.
T Consensus        14 l~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~   86 (249)
T 3ftd_A           14 LVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDAS   86 (249)
T ss_dssp             EECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTT
T ss_pred             cCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchh
Confidence            456666666666666667889999999999999999985 2 47999999999999999876    2 247999999998


Q ss_pred             HHH-HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccC--CCCcEEEE
Q 024097          182 DSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI--RVGGIIVI  227 (272)
Q Consensus       182 ~~~-~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lL--kpgG~lvi  227 (272)
                      +.. +..     .+.| .|+.+.+..-....+..+....  -+.+++++
T Consensus        87 ~~~~~~~-----~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A           87 KFPFCSL-----GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             TCCGGGS-----CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             hCChhHc-----cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence            742 211     1233 6677766544445555554322  23445544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.74  E-value=1.1e-07  Score=91.88  Aligned_cols=142  Identities=9%  Similarity=0.061  Sum_probs=93.2

Q ss_pred             CChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhh------cCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEE
Q 024097           81 REPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVAC  150 (272)
Q Consensus        81 ~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~------~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~i  150 (272)
                      ..+++...+.+.....  ..+.....+..+.++..++..      .++.+|||.|||+|.+.+.+++.++  ...+++|+
T Consensus       275 ~~DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGv  354 (878)
T 3s1s_A          275 TGDELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAN  354 (878)
T ss_dssp             SSHHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEE
T ss_pred             chHHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEE
Confidence            3455555555543222  233445678888888877321      2467999999999999999998774  13579999


Q ss_pred             eCChhHHHHH--HHHHHHhCCCC---CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------------------
Q 024097          151 ERDARSLEVA--KKYYERAGVSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------  206 (272)
Q Consensus       151 D~s~~~~~~a--~~~~~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------  206 (272)
                      |+++.+++.|  +.++..+.+.+   ...+...|..+....     ...+||+|+.+.+..                   
T Consensus       355 EIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-----~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g  429 (878)
T 3s1s_A          355 DIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-----DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQL  429 (878)
T ss_dssp             CSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-----GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-----ccCCCCEEEECCCccccccchhhhhhHHHHhhhh
Confidence            9999999999  55443322211   135555666542111     136899999987621                   


Q ss_pred             -------------chHHHHHHHHccCCCCcEEEE
Q 024097          207 -------------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       207 -------------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                                   .+..+++.+.++|++||.+++
T Consensus       430 ~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          430 TGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             HSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                         023467888899999998876

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.73  E-value=4e-08  Score=92.22  Aligned_cols=140  Identities=11%  Similarity=0.096  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHH-------cCCCCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEE
Q 024097           84 EILRQLREETA-------GMRGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVAC  150 (272)
Q Consensus        84 ~~l~~~~~~~~-------~~~~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~i  150 (272)
                      +.+..+++..-       ....+..-..+....+|..++.    ..++.+|+|.+||+|.+...+++.+.  ...+++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            56666665531       1123344567888888888887    34667999999999999999988863  24689999


Q ss_pred             eCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHH-HHHHhCCCCCceEEEEEcCCcc-----------c----------
Q 024097          151 ERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSL-KALILNGEASSYDFAFVDAEKR-----------M----------  207 (272)
Q Consensus       151 D~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~~~~~~~fDlV~~d~~~~-----------~----------  207 (272)
                      |+++.++..|+.++...|.. +++.+.++|.+... +.    ....+||+|+.+.+..           +          
T Consensus       255 Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~----~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~  330 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT----QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLA  330 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC----SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCC
T ss_pred             ECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc----cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcC
Confidence            99999999999999888885 46899999987631 10    1146899999886510           0          


Q ss_pred             -----hHHHHHHHHccCC-CCcEEEE
Q 024097          208 -----YQEYFELLLQLIR-VGGIIVI  227 (272)
Q Consensus       208 -----~~~~l~~~~~lLk-pgG~lvi  227 (272)
                           ...+++.+.++|+ +||++++
T Consensus       331 ~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          331 PKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             CTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             CCchhhHHHHHHHHHHhCCCceeEEE
Confidence                 1247899999999 9998865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.72  E-value=4e-08  Score=83.49  Aligned_cols=96  Identities=11%  Similarity=-0.110  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+.....+...+...++.+|||||||+|..|. +.+ .+ ..+|+++|+++++++.+++++...   ++++++++|+.+
T Consensus         5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~   78 (252)
T 1qyr_A            5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhh
Confidence            345555666666666677899999999999999 654 32 234999999999999999876432   379999999987


Q ss_pred             H-HHHHHhCCCCCceEEEEEcCCcc
Q 024097          183 S-LKALILNGEASSYDFAFVDAEKR  206 (272)
Q Consensus       183 ~-~~~~~~~~~~~~fDlV~~d~~~~  206 (272)
                      . .+.....  .+..|.|+.+.+..
T Consensus        79 ~~~~~~~~~--~~~~~~vvsNlPY~  101 (252)
T 1qyr_A           79 FNFGELAEK--MGQPLRVFGNLPYN  101 (252)
T ss_dssp             CCHHHHHHH--HTSCEEEEEECCTT
T ss_pred             CCHHHhhcc--cCCceEEEECCCCC
Confidence            4 3332100  02357777776643

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.70  E-value=3.6e-09  Score=84.52  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=67.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++.+|||||||.                 +++|+++.|++.|+++..     .+++++++|+.+....   ...+++|
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~---~~~~~~f   64 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQS---AHKESSF   64 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGG---CCCSSCE
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccc---cCCCCCE
Confidence            35678999999985                 239999999999998752     2489999998764210   0025789


Q ss_pred             EEEEEcCC---c-cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          197 DFAFVDAE---K-RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       197 DlV~~d~~---~-~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |+|++...   . .+...+++++.++|||||.+++.+.
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            99998543   2 5568899999999999999999644

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.60  E-value=2e-07  Score=79.67  Aligned_cols=84  Identities=12%  Similarity=0.098  Sum_probs=67.4

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++..+||.+||.|..+..+++.   +++|+|+|.++.+++.|++ ++.    ++++++++++.+....+...+ .++
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g-~~~   89 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALG-VER   89 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTT-CSC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcC-CCC
Confidence            3456789999999999999999986   5799999999999999988 633    589999999987644443322 368


Q ss_pred             eEEEEEcCCccch
Q 024097          196 YDFAFVDAEKRMY  208 (272)
Q Consensus       196 fDlV~~d~~~~~~  208 (272)
                      +|.|+.|.....+
T Consensus        90 vDgIL~DLGvSS~  102 (285)
T 1wg8_A           90 VDGILADLGVSSF  102 (285)
T ss_dssp             EEEEEEECSCCHH
T ss_pred             cCEEEeCCccccc
Confidence            9999998765543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.37  E-value=2.2e-06  Score=75.01  Aligned_cols=86  Identities=23%  Similarity=0.141  Sum_probs=68.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++..+||..+|.|..+..+++.+++.++|+|+|.++++++.++ ++    ..++++++++++.+....+...+-.+++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            456789999999999999999999877899999999999999884 33    2468999999998765555433322479


Q ss_pred             EEEEEcCCccc
Q 024097          197 DFAFVDAEKRM  207 (272)
Q Consensus       197 DlV~~d~~~~~  207 (272)
                      |.|+.|...+.
T Consensus       130 DgILfDLGVSS  140 (347)
T 3tka_A          130 DGILLDLGVSS  140 (347)
T ss_dssp             EEEEEECSCCH
T ss_pred             cEEEECCccCH
Confidence            99999876443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.32  E-value=3.4e-06  Score=64.86  Aligned_cols=85  Identities=15%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             CCCEEEEEcCccC-HHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G-~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++.+|||||||.| ..+..|++..  +..|+++|+++.+++                ++..|..+....+     -..||
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~-----Y~~~D   91 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI-----YRGAA   91 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH-----HTTEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc-----cCCcC
Confidence            4579999999999 5999999753  578999999998665                7777776632222     15899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+.-.+.......+-.+.+.  -|.-++|-
T Consensus        92 LIYsirPP~El~~~i~~lA~~--v~adliI~  120 (153)
T 2k4m_A           92 LIYSIRPPAEIHSSLMRVADA--VGARLIIK  120 (153)
T ss_dssp             EEEEESCCTTTHHHHHHHHHH--HTCEEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence            997665555544445455442  35556664

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.26  E-value=7.5e-07  Score=76.19  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..++..+-. .++..+||+-+|+|..++.+++   ++.+++.+|.+++.++..++|++.   .++++++..|+...+..+
T Consensus        81 ~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l  153 (283)
T 2oo3_A           81 LEYISVIKQ-INLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL  153 (283)
T ss_dssp             HHHHHHHHH-HSSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHH-hcCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHh
Confidence            344444444 4567899999999999998776   257999999999999999998854   457999999998877765


Q ss_pred             HhCCCCCceEEEEEcCCcc---chHHHHHHHHc--cCCCCcEEEE
Q 024097          188 ILNGEASSYDFAFVDAEKR---MYQEYFELLLQ--LIRVGGIIVI  227 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~---~~~~~l~~~~~--lLkpgG~lvi  227 (272)
                      ...  ..+||+||+|.+.+   .+...++.+.+  .+.++|++++
T Consensus       154 ~~~--~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          154 LPP--PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CSC--TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cCC--CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            322  24799999999743   46666666543  5678998885

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.15  E-value=8.7e-06  Score=76.24  Aligned_cols=141  Identities=11%  Similarity=0.100  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC------------Cc
Q 024097           84 EILRQLREETAG----M--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE------------SG  145 (272)
Q Consensus        84 ~~l~~~~~~~~~----~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~------------~~  145 (272)
                      +.+.++++..-.    .  ..+..-..+....+|..++...++.+|+|-.||+|.+.....+.+..            ..
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            456666665421    1  23445667889999999998888889999999999998877665421            24


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------------------
Q 024097          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------  206 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------  206 (272)
                      .++|+|+++.+...|+-++--.|... ..+..+|.+...  ....++..+||+|+.+.+..                   
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~dtL~~~--~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~  332 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLRFP--LREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE  332 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHTCSC-CEEECSCTTCSC--GGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred             hhhhhhccHHHHHHHHHHHHhcCCcc-ccccccccccCc--hhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence            69999999999999999888788753 567888876421  11111235799999987621                   


Q ss_pred             chHHHHHHHHccCC-------CCcEEEE
Q 024097          207 MYQEYFELLLQLIR-------VGGIIVI  227 (272)
Q Consensus       207 ~~~~~l~~~~~lLk-------pgG~lvi  227 (272)
                      ....+++.+.+.|+       +||++.+
T Consensus       333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~av  360 (530)
T 3ufb_A          333 TAMLFLQLIMRKLKRPGHGSDNGGRAAV  360 (530)
T ss_dssp             HHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence            12346777777776       6887665

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.08  E-value=3.1e-06  Score=71.95  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||+|||+|.++..+++..+ ...++++|+.-+........ ...+.  ++..+.+++ +... +    ..++|
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~-dv~~-l----~~~~~  141 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKT-DIHR-L----EPVKC  141 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSC-CTTT-S----CCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCCC--CeEEEeccc-eehh-c----CCCCc
Confidence            34567999999999999999887643 45788888874421000000 00011  234445544 2111 1    24789


Q ss_pred             EEEEEcCCcc----ch-----HHHHHHHHccCCCC-cEEEEeCCCC
Q 024097          197 DFAFVDAEKR----MY-----QEYFELLLQLIRVG-GIIVIDNVLW  232 (272)
Q Consensus       197 DlV~~d~~~~----~~-----~~~l~~~~~lLkpg-G~lvi~d~~~  232 (272)
                      |+|++|....    ..     ...++.+.+.|+|| |.+|+. ++.
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K-Vf~  186 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK-VLA  186 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-ESC
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE-ecC
Confidence            9999997433    11     12457778999999 999994 443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.03  E-value=1.3e-06  Score=73.21  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=62.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHH--CCC-CcEEEEEe--CChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALV--LPE-SGCLVACE--RDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~--~~~-~~~v~~iD--~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~  190 (272)
                      ..++.+|||+||+.|.|+.+.++.  ++. .+.++++|  +.|-..      . ..|+ +-++|+++ |+.+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~-~~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------Q-SYGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------C-STTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------c-CCCc-eEEEeeccCCccCC-------
Confidence            446789999999999999999986  321 24566666  222100      0 0111 12466668 99762       


Q ss_pred             CCCCceEEEEEcCCccc---------hHHHHHHHHccCCCCc-EEEEe
Q 024097          191 GEASSYDFAFVDAEKRM---------YQEYFELLLQLIRVGG-IIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~---------~~~~l~~~~~lLkpgG-~lvi~  228 (272)
                       +..++|+|++|.....         ....++.+.+.|+||| .+++-
T Consensus       136 -~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 -PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             -CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             -CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence             1358999999965211         1125666778999999 88884

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.99  E-value=1.2e-05  Score=71.40  Aligned_cols=71  Identities=7%  Similarity=0.030  Sum_probs=54.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||+||++|++|..+++.   +++|++||+.+-.-     .+.  . ..+|+++++|+.+..+.      .++||
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~~-----~l~--~-~~~V~~~~~d~~~~~~~------~~~~D  272 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMAQ-----SLM--D-TGQVTWLREDGFKFRPT------RSNIS  272 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCCH-----HHH--T-TTCEEEECSCTTTCCCC------SSCEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcCh-----hhc--c-CCCeEEEeCccccccCC------CCCcC
Confidence            46889999999999999999885   67999999875321     121  1 24799999998775331      46899


Q ss_pred             EEEEcCCc
Q 024097          198 FAFVDAEK  205 (272)
Q Consensus       198 lV~~d~~~  205 (272)
                      +|++|...
T Consensus       273 ~vvsDm~~  280 (375)
T 4auk_A          273 WMVCDMVE  280 (375)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCCC
Confidence            99999864

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.98  E-value=2e-06  Score=73.24  Aligned_cols=101  Identities=14%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~  195 (272)
                      ..+..+|||||||.|.++..+++..+ ...|+++|+...+...+... ...+. +-+.+... |..+    +    ..++
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~----l----~~~~  156 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFN----M----EVIP  156 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGG----S----CCCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhh----c----CCCC
Confidence            45677999999999999999887654 45799999976532211100 00111 11333322 3221    1    2478


Q ss_pred             eEEEEEcCCcc----c-----hHHHHHHHHccCCCC--cEEEEe
Q 024097          196 YDFAFVDAEKR----M-----YQEYFELLLQLIRVG--GIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~----~-----~~~~l~~~~~lLkpg--G~lvi~  228 (272)
                      +|+|++|....    .     ....++.+.+.|+||  |.+|+-
T Consensus       157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            99999997633    1     123466667899999  999985

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.86  E-value=8.2e-05  Score=64.39  Aligned_cols=50  Identities=18%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  170 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~  170 (272)
                      .++..|||++||+|..++.+++.   +.+++|+|+++++++.|+++++.....
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~  283 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPG  283 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence            46789999999999999988764   469999999999999999999876443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.81  E-value=6.1e-05  Score=62.35  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=69.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  194 (272)
                      ...++.+|||+||++|.++.+.+...+ ..+|+++|+-..-.+.- ..++..|++ .++|+.+ |.....        ..
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P-~~~~s~gwn-~v~fk~gvDv~~~~--------~~  143 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-VPMSTYGWN-IVKLMSGKDVFYLP--------PE  143 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCC-CCCCCTTTT-SEEEECSCCGGGCC--------CC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCc-chhhhcCcC-ceEEEeccceeecC--------Cc
Confidence            345778999999999999999888754 45899999976432100 011224554 5999999 874321        46


Q ss_pred             ceEEEEEcCCccc---------hHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRM---------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~---------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++|.|++|-....         ....++.+.+.|++ |-+++-
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            7999999965221         23356777788998 777773

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.78  E-value=3e-05  Score=66.39  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|||+||++|.++..+++..+ ...|+++|+.......... ....+. +-+.+..+ |...    +    ..+++
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~----l----~~~~~  148 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFT----M----PTEPS  148 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTT----S----CCCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceeee----c----CCCCc
Confidence            4678999999999999999998644 4578999997532110000 000011 11333322 2211    1    14689


Q ss_pred             EEEEEcCCcc----c-----hHHHHHHHHccCCCC-cEEEEe
Q 024097          197 DFAFVDAEKR----M-----YQEYFELLLQLIRVG-GIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~----~-----~~~~l~~~~~lLkpg-G~lvi~  228 (272)
                      |+|++|....    .     ....++.+...|+|| |.+|+-
T Consensus       149 DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          149 DTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            9999997533    1     123466667999999 999996

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.76  E-value=0.00013  Score=63.18  Aligned_cols=105  Identities=21%  Similarity=0.235  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHH---HCCCCc--EEEEEeCCh--------h-HHHHHHHHHHHhCC--CCC--EEEEEcCh
Q 024097          119 GAQRCIEVGVYTGYSSLAIAL---VLPESG--CLVACERDA--------R-SLEVAKKYYERAGV--SHK--VKIKHGLA  180 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~---~~~~~~--~v~~iD~s~--------~-~~~~a~~~~~~~~~--~~~--v~~~~~d~  180 (272)
                      +.-+|||+|-|+|...+...+   ...+..  +++++|..+        + ..+..+..+.....  ..+  +++..||+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            345899999999997654332   223344  467777532        1 22223333322111  123  46788999


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEE
Q 024097          181 ADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .+.++.+    +...||+||.|+-      .-+..++|+.+.++++|||+++-
T Consensus       176 ~~~l~~l----~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          176 RKRIKEV----ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHGGGC----CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHhhh----cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            9887765    1347999999974      11357899999999999999985

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.73  E-value=0.00011  Score=65.09  Aligned_cols=77  Identities=8%  Similarity=-0.016  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHhhc------CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097          102 QVSPDQAQLLAMLVQIL------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~------~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      .+++...+-+...+...      ++..|||||.|.|.+|..|++... ..+|+++|+++..+...++.+ .   .+++++
T Consensus        35 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~i  109 (353)
T 1i4w_A           35 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQI  109 (353)
T ss_dssp             BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEE
T ss_pred             cCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEE
Confidence            44555555555544443      357999999999999999998632 358999999999998888765 1   357999


Q ss_pred             EEcChhHH
Q 024097          176 KHGLAADS  183 (272)
Q Consensus       176 ~~~d~~~~  183 (272)
                      +++|+.++
T Consensus       110 i~~D~l~~  117 (353)
T 1i4w_A          110 LKRDPYDW  117 (353)
T ss_dssp             ECSCTTCH
T ss_pred             EECCccch
Confidence            99999875

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.69  E-value=1.5e-05  Score=76.99  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-------CC----CcEEEEEeCChhHHHHHHH--------------HHHHh-----C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSLEVAKK--------------YYERA-----G  168 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-------~~----~~~v~~iD~s~~~~~~a~~--------------~~~~~-----~  168 (272)
                      +.-+|+|+|.|+|+..+.+.+.+       |.    ..+++++|..|...+..++              .++..     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999998876653       11    2579999996644333332              22211     1


Q ss_pred             -----CCC---CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------chHHHHHHHHccCCCCcEEEEeC
Q 024097          169 -----VSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       169 -----~~~---~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                           +.+   ++++..||+.+.++.+... ....+|.+|+|+...      +...++..+.++++|||.+....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS-LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG-GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc-cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                 111   4678899999987764110 026899999997532      24788999999999999987643

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.68  E-value=7.8e-05  Score=63.71  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~  195 (272)
                      ..++.+||||||++|.++.+++...+ ..+|+|+|+-..-.+.- ..++..++. -|.++.+ |+....        ..+
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~~ql~w~-lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLVQSYGWN-IVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCCCBTTGG-GEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chhhhcCCc-ceEEEeccCHhhCC--------CCC
Confidence            44667999999999999998887654 34799999976421100 000112222 3888887 764321        367


Q ss_pred             eEEEEEcCCccc---------hHHHHHHHHccCCCC-cEEEEe
Q 024097          196 YDFAFVDAEKRM---------YQEYFELLLQLIRVG-GIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~---------~~~~l~~~~~lLkpg-G~lvi~  228 (272)
                      +|+|++|.....         ....|+.+.+.|++| |-+++-
T Consensus       161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            999999965211         233566667888888 888883

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.58  E-value=0.00015  Score=61.88  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=60.1

Q ss_pred             CCCEEEEEcC------ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          119 GAQRCIEVGV------YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       119 ~~~~VLEiG~------G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .+.+|||+|+      ..|.+  .+.+..+.++.|+++|+.+-.           ...+  .+++||..+...       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda~--~~IqGD~~~~~~-------  166 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDAD--STLIGDCATVHT-------  166 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSSS--EEEESCGGGEEE-------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCCC--eEEEcccccccc-------
Confidence            5689999996      56663  334445544699999998732           1122  459999755221       


Q ss_pred             CCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++||+|++|....              -....++-+.+.|+|||.|++-
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            47899999985411              1344566677899999999997

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.37  E-value=0.00024  Score=63.61  Aligned_cols=107  Identities=7%  Similarity=0.030  Sum_probs=63.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHH-------------C---CCCcEEEEEeCC-----------hhHHHHHHHHHHHhCCCCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALV-------------L---PESGCLVACERD-----------ARSLEVAKKYYERAGVSHK  172 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~-------------~---~~~~~v~~iD~s-----------~~~~~~a~~~~~~~~~~~~  172 (272)
                      ..+|+|+||++|..|+.+...             .   ++..+|+.-|+-           +.+.+..++   ..|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            568999999999999988765             1   234578888876           332222211   1222112


Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccc------------------------------------------hHH
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------------------------------------------YQE  210 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~------------------------------------------~~~  210 (272)
                      ..|+.|..-.+-..+.   ..+++|+|++....++                                          ...
T Consensus       130 ~~f~~gvpgSFy~rlf---p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF---PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             SEEEEECCSCTTSCCS---CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchhhhhccC---CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            3555554433211111   2589999997643111                                          112


Q ss_pred             HHHHHHccCCCCcEEEEeCCCC
Q 024097          211 YFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       211 ~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      +|+...+.|+|||.+++.-...
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~gr  228 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFICK  228 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhccCCeEEEEEecC
Confidence            3555579999999999975544

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.34  E-value=0.0014  Score=58.55  Aligned_cols=38  Identities=11%  Similarity=0.203  Sum_probs=27.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHH--------C------CCCcEEEEEeCChhHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALV--------L------PESGCLVACERDARSL  157 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~--------~------~~~~~v~~iD~s~~~~  157 (272)
                      +.+|+|+||++|..|+.+...        .      ++..+|+.-|+-..-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDF  104 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDF  104 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccch
Confidence            578999999999999987432        1      2356777777665444

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.21  E-value=0.0012  Score=63.51  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-------C----CCcEEEEEeC---ChhHHHHH-----------HHHHHHhCC------
Q 024097          121 QRCIEVGVYTGYSSLAIALVL-------P----ESGCLVACER---DARSLEVA-----------KKYYERAGV------  169 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~-------~----~~~~v~~iD~---s~~~~~~a-----------~~~~~~~~~------  169 (272)
                      -+|+|+|-|+|+..+...+.+       |    ..-+++++|.   +++.+..+           ++..+....      
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999888776553       1    1246999999   55554422           222222111      


Q ss_pred             -------CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEEeC
Q 024097          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       170 -------~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                             .-++++..||+.+.++.+... ....||++|.|+..      -+..+++..+.++++|||.+....
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS-LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG-GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc-cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                   013567889998887765111 02679999999752      235778999999999999988653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.16  E-value=0.0013  Score=55.56  Aligned_cols=48  Identities=8%  Similarity=0.149  Sum_probs=40.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  168 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~  168 (272)
                      .++..|||..||+|..+....+.   +.+++|+|+++..++.++++++..+
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            56789999999999999887764   4599999999999999999987654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.11  E-value=0.00098  Score=60.25  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHH-HHCCCCcEEEEEeCChhHHHHHHHHHHH--hCCC-CCEEEEE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYER--AGVS-HKVKIKH  177 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~~-~~v~~~~  177 (272)
                      .++..|+|||++.|..+..++ +..++.++|+++|++|...+..+++++.  ++.. ++++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            567899999999999999988 5555448999999999999999999987  2222 4566553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.07  E-value=0.0019  Score=56.58  Aligned_cols=101  Identities=19%  Similarity=0.227  Sum_probs=68.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+|. |..+..+++..+  .+|+++|.+++..+.+++    .|...-+.....+..+.+...     .+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~-----~g  231 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE-----IG  231 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh-----CC
Confidence            445778999999874 888888998864  699999999998887755    454321111112333322221     24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|.||.....   ...++.+.+.|++||.+++-..
T Consensus       232 ~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          232 GAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence            79999865432   3467888899999999987543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.02  E-value=0.00011  Score=65.31  Aligned_cols=110  Identities=10%  Similarity=0.039  Sum_probs=68.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHH---------------CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALV---------------LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~---------------~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      +.+|+|+||++|..|+.+...               -++..+|+.-|+-.......-+.+.......+..|+.|..-..-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            457999999999988876554               23457899999988777666554432110012344444332211


Q ss_pred             HHHHhCCCCCceEEEEEcCCcc------------------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097          185 KALILNGEASSYDFAFVDAEKR------------------------------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~~------------------------------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.   ..+++|+|++....+                                    +...+|+...+.|+|||.+++.
T Consensus       132 ~rlf---p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          132 GRLF---PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             SCCS---CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hccC---CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            1111   258999999753211                                    1234577778999999999997


Q ss_pred             CCCC
Q 024097          229 NVLW  232 (272)
Q Consensus       229 d~~~  232 (272)
                      -...
T Consensus       209 ~~gr  212 (359)
T 1m6e_X          209 ILGR  212 (359)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            5543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.01  E-value=0.0017  Score=57.57  Aligned_cols=104  Identities=20%  Similarity=0.265  Sum_probs=67.8

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+...   . .+
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~---~-~g  257 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEI---T-DG  257 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH---T-TS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHh---c-CC
Confidence            345678999999875 778888888764 2379999999998887764    353211111112222323222   1 23


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+|+||-....   ...++.+.+.|++||.+++-...
T Consensus       258 g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          258 GVNFALESTGS---PEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             CEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCCC
Confidence            79999865432   24678889999999999885443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.99  E-value=0.0017  Score=58.23  Aligned_cols=108  Identities=16%  Similarity=0.290  Sum_probs=69.4

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~  191 (272)
                      .....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|. +-+.....+. .+.+..+.   
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~---  250 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL---  250 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH---
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh---
Confidence            34556788999999875 788888888764 2399999999988877654    453 1111111222 33333321   


Q ss_pred             CCCceEEEEEcCCccc-----------hHHHHHHHHccCCCCcEEEEeCC
Q 024097          192 EASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +...+|+||-......           ....++.+.+.|++||.+++-..
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            1236999986544321           12468888999999999986543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.92  E-value=0.0012  Score=52.96  Aligned_cols=100  Identities=13%  Similarity=0.138  Sum_probs=61.1

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+..  ..+-..+ .+....+.......
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~-~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE--YVGDSRS-VDFADEILELTDGY  106 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS--EEEETTC-STHHHHHHHHTTTC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--EEeeCCc-HHHHHHHHHHhCCC
Confidence            446789999994  4555666666554  4799999999887765543    3432  2221111 12222221111124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|++|.....    ..++.+.+.|++||.++.-.
T Consensus       107 ~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          107 GVDVVLNSLAG----EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CEEEEEECCCT----HHHHHHHHTEEEEEEEEECS
T ss_pred             CCeEEEECCch----HHHHHHHHHhccCCEEEEEc
Confidence            69999865532    46788899999999998743

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.89  E-value=0.0026  Score=56.03  Aligned_cols=76  Identities=13%  Similarity=0.054  Sum_probs=54.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +.+|+|+.||.|..++.+.++--.-..|.++|+++.+++..+.|+..      ..++.+|..+.......   ...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~---~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD---RLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH---HHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC---cCCcCEE
Confidence            35899999999999999987621013699999999999988887632      34678888775322111   1268999


Q ss_pred             EEcCC
Q 024097          200 FVDAE  204 (272)
Q Consensus       200 ~~d~~  204 (272)
                      +.+.+
T Consensus        73 ~~gpP   77 (343)
T 1g55_A           73 LMSPP   77 (343)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.88  E-value=0.014  Score=51.45  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC---hhHHHHHHHhC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALILN  190 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~  190 (272)
                      ....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|..   .++..+   ..+....+...
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH
Confidence            4456788999999874 778888888764 2389999999988777754    4543   222222   22222222111


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      . ...+|+||-....   ...++.+.++|++||.++.-..
T Consensus       239 ~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          239 L-GCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             H-TSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             h-CCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEec
Confidence            1 1469999865432   2357788899999999987543

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.80  E-value=0.0058  Score=54.56  Aligned_cols=102  Identities=13%  Similarity=-0.027  Sum_probs=67.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH-HHhC-CCCCceEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA-LILN-GEASSYDF  198 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~-~~~~~fDl  198 (272)
                      .+|+|+.||.|..++.+.++-  -..+.++|+++.+.+..+.|+.      ...++.+|+.+.... +... .....+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            489999999999999998762  2357799999999888777652      357788888764322 1100 01357999


Q ss_pred             EEEcCCcc-----------c-hHHH---HHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAEKR-----------M-YQEY---FELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~~-----------~-~~~~---l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+.+.+..           + ....   +-.+.+.++| -++++.||.
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-~~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-LFFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC-SEEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC-CEEEEecch
Confidence            99876511           1 0111   2233455678 568888874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.79  E-value=0.0029  Score=55.74  Aligned_cols=107  Identities=20%  Similarity=0.221  Sum_probs=68.4

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+.+...   .+
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~---t~  232 (352)
T 3fpc_A          161 LANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGATDIINYKNGDIVEQILKA---TD  232 (352)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCCEEECGGGSCHHHHHHHH---TT
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCceEEcCCCcCHHHHHHHH---cC
Confidence            34456788999999874 777788887654 2389999999988877765    454311111112333333222   12


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ...+|+||-.....   ..++.+.+.|++||.++.-...
T Consensus       233 g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          233 GKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEeccc
Confidence            34799998544332   3577888899999999976543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.78  E-value=0.0006  Score=74.34  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC----CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +..+|||||.|+|..+..+.+.+..    ..+++.+|+++.+.+.+++.++...    ++...-|..+....     ...
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~-----~~~ 1310 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPG-----SLG 1310 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC---------
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccC-----CCC
Confidence            4579999999999988887777642    2479999999999988888876532    33221122110000     135


Q ss_pred             ceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .||+|+....   ..+....+.++.++|||||.+++..+
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            7999997654   33556678999999999999998654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.76  E-value=0.012  Score=51.52  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=69.0

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||-+|+|. |..+..+++... +.+|+++|.+++..+.+++    .|...-+.....|..+.+....   ..
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t---~g  230 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT---GG  230 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT---TS
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc---CC
Confidence            3455778999999985 445556666654 6799999999987776654    4543323333444444443331   13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|.++.+...   ...+..+.+.|+++|.+++-..
T Consensus       231 ~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence            468888876543   3457788899999999988643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.72  E-value=0.0077  Score=53.87  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=69.2

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~  192 (272)
                      ....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|.. .+.....+ ..+.+....   .
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t---~  251 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL---G  251 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH---S
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh---C
Confidence            4456788999999875 778888888864 2389999999998887754    4541 11111111 222233221   1


Q ss_pred             CCceEEEEEcCCccc------------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          193 ASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~------------~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ...+|+||-......            ....++.+.+.|++||.+++-...
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccc
Confidence            247999986543221            224688889999999999875543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.67  E-value=0.014  Score=50.96  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||-+|+|. |..+..+++..+ ...++++|.+++..+.+++    .|...-+.....+..+....+..   .
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~---~  227 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE---L  227 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG---G
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc---c
Confidence            3445778999999874 556677788765 4578999999998877765    56542222222333333333321   3


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..+|+|+-....   ...++.+.++|++||.+++-....
T Consensus       228 ~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          228 RFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             CSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCCS
T ss_pred             CCcccccccccc---cchhhhhhheecCCeEEEEEeccC
Confidence            567888755432   345788889999999999865543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.64  E-value=0.0046  Score=54.20  Aligned_cols=103  Identities=20%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+|. |..+..+++..+ +.+|+++|.+++..+.+++    .|...-+.. ..+..+.+..+..   ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t~---g~  238 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELTG---GQ  238 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHHG---GG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHhC---CC
Confidence            456788999999874 777888888764 5799999999998887755    454321111 1123333332211   24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||-....   ...++.+.+.|++||.+++-..
T Consensus       239 g~d~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGA---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCeEEEECCCC---HHHHHHHHHHHhcCCEEEEECC
Confidence            79998865432   2367888999999999998644

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.53  E-value=0.0099  Score=52.41  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=69.4

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHh
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALIL  189 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~  189 (272)
                      .....++++||-+|+|. |..+..+++..+  ++ |+++|.+++..+.+++. .    ..-+.+...  +..+....+.+
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHH
Confidence            34456788999999864 777888888764  55 99999999999888764 1    122333321  12222222222


Q ss_pred             CCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+...+|+||-....   ...++.+.++|++||.+++-..
T Consensus       247 ~t~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          247 SFGGIEPAVALECTGV---ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             HTSSCCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECCC
T ss_pred             HhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEcc
Confidence            1123579999864432   2357788899999999998543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.53  E-value=0.0044  Score=55.00  Aligned_cols=109  Identities=19%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .....++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....|..+.+....... 
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~-  250 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLV-  250 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSS-
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhcc-
Confidence            34456788999999874 777788888764 2389999999998887765    4543211111122222222100011 


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+.+|+||-....   ...++.+.++|++||.+++-...
T Consensus       251 ~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          251 PGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             TTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEecc
Confidence            2479999854432   34678888999999999985443

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.53  E-value=0.008  Score=53.95  Aligned_cols=106  Identities=11%  Similarity=0.123  Sum_probs=63.9

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....|..+.+...   .....
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i~~~---t~g~g  282 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFVEAVLDY---TNGLG  282 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHHHHHHH---TTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHHHHHHHH---hCCCC
Confidence            45678999999863 667777888764 2399999999998887765    353211111112333333322   11347


Q ss_pred             eEEEEEcCCcc--chHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|+||-.....  .....++.+.+.+++||.+++-..
T Consensus       283 ~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          283 AKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            99998654433  222333333455599999998544

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.47  E-value=0.029  Score=49.71  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|..   .++...-.+....+     .+
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~-----~~  256 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH-----LK  256 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT-----TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh-----hc
Confidence            455788999999874 77778888876  4689999999998887765    3532   22222222222222     25


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|+||-......   .++.+.+.|++||.++.-.
T Consensus       257 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          257 SFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             CCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            7999986544332   3567889999999998743

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.45  E-value=0.0071  Score=52.75  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+.+   ..|...-+.....+..+.+...   . 
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~---~-  215 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKRE---C-  215 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHH---C-
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHh---c-
Confidence            34567889999998  4677777777765  4699999999987776632   2343211111112222222222   1 


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+.+|+||-....    ..++.+.+.|++||.+++-.
T Consensus       216 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          216 PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence            2579998865542    36888899999999999754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.44  E-value=0.0036  Score=55.39  Aligned_cols=101  Identities=18%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHhC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~  190 (272)
                      ....++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|...   ++..   +..+.+....  
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~v~~~~--  253 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADH---GINRLEEDWVERVYALT--  253 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHH--
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCE---EEcCCcccHHHHHHHHh--
Confidence            3445778999999774 77778888876  4699999999988877655    45432   2222   2223232221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                       +...+|+||-.....    .++.+.+.|++||.+++-...
T Consensus       254 -~g~g~D~vid~~g~~----~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          254 -GDRGADHILEIAGGA----GLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             -TTCCEEEEEEETTSS----CHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEECCChH----HHHHHHHHhhcCCEEEEEecC
Confidence             134799998655422    366788899999999976543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.019  Score=50.31  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  192 (272)
                      ....++++||-+|+|. |..+..+++..+  .+|+++|.+++..+.+++    .|...-+.... .+..+.+........
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcccc
Confidence            4456788999999864 677778888764  679999999988877754    45431111110 222222222211000


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       238 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          238 GDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            1469999865432   235778889999999998754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.013  Score=51.96  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=66.1

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc----ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG----LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-..    +..+.+....  
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~--  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATD--FVNPNDHSEPISQVLSKMT--  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCE--EECGGGCSSCHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCce--EEeccccchhHHHHHHHHh--
Confidence            345678999999864 677778888764 2389999999998887764    45431  11111    2222232221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                        .+.+|+||-....   ...++.+.++|++| |.++.-..
T Consensus       260 --~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 --NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             --TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             --CCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence              2479999865432   34578889999999 99987543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.36  E-value=0.11  Score=44.97  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhH-HHHHHHhCC-CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD-SLKALILNG-EAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~-~~~  194 (272)
                      ....||+||||.=.-...+.  .+++.+++-+| .|+.++..++.+...+.  .++..++.+|..+ +...+...+ +.+
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45689999998665543332  23357899999 59999999999876543  4578899999876 333333332 223


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..-++++.+.     ......+++.+...+.||+.|+++.+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            3445555443     334567788888888999999998654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.35  E-value=0.014  Score=51.78  Aligned_cols=101  Identities=15%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE----cChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH----GLAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~----~d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-.    .+..+.+....  
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~v~~~~--  262 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATD--CLNPRELDKPVQDVITELT--  262 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCcE--EEccccccchHHHHHHHHh--
Confidence            34567899999986 3677778888764 2389999999998887754    45431  1111    12223233221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                        .+.+|+||-....   ...++.+.+.|++| |.+++-..
T Consensus       263 --~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 --AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             --TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             --CCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence              2479999854432   34578889999999 99987544

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.34  E-value=0.011  Score=51.67  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ...+|+|+.||.|..++.+.++ + -..+.++|+++.+++..+.|+...     .   .+|..+.....     -..+|+
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~a-G-~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~-----~~~~D~   74 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT-----IPDHDI   74 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG-----SCCCSE
T ss_pred             CCCcEEEECCCcCHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh-----CCCCCE
Confidence            3468999999999999998875 2 235889999999999888887321     1   57777643321     246899


Q ss_pred             EEEcCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~~------------~~-----~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+.+.+.            .+     +..++ .+.+.++|. ++++.||.
T Consensus        75 l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~-r~i~~~~P~-~~~~ENV~  122 (327)
T 2c7p_A           75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPK-VVFMENVK  122 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCS-EEEEEEEG
T ss_pred             EEECCCCCCcchhcccCCCcchhhHHHHHHH-HHHHhccCc-EEEEeCcH
Confidence            9976430            11     12223 334556884 78888875

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.31  E-value=0.072  Score=46.62  Aligned_cols=115  Identities=10%  Similarity=0.100  Sum_probs=77.1

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--------------------CCC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------------VSH  171 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--------------------~~~  171 (272)
                      ...+...+...|+.+|||.......+....+ +.+++-+|. |+.++.-++.+...+                    ..+
T Consensus        90 ~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (334)
T 1rjd_A           90 LEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG  167 (334)
T ss_dssp             HHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred             HHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence            3334335667999999999999888887544 567777777 888887777776642                    135


Q ss_pred             CEEEEEcChhHH--HHHHHhC-CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEE-EeC
Q 024097          172 KVKIKHGLAADS--LKALILN-GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIV-IDN  229 (272)
Q Consensus       172 ~v~~~~~d~~~~--~~~~~~~-~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lv-i~d  229 (272)
                      +.+++.+|..+.  +..++.. ++.+...++++.+.     ......+++.+.... |+|.++ ++-
T Consensus       168 ~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          168 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             ceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            799999999863  3333222 23355677777664     344566777777766 667665 443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.31  E-value=0.0099  Score=51.73  Aligned_cols=98  Identities=17%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+  |.|..+..+++..  +.+|+++|.+++..+.+++    .+..  ..+-..   +..+.+...   
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~---  210 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKKA---  210 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHHH---
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHHH---
Confidence            3456789999997  4566666666664  4699999999887776633    3432  222211   222222222   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      . .+.+|++|.....    ..++.+.+.|++||.+++-.
T Consensus       211 ~-~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          211 S-PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             C-TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             h-CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence            1 2479999876653    34788889999999998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.29  E-value=0.013  Score=51.99  Aligned_cols=101  Identities=15%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc----ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG----LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-..    +..+.+...   
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~--vi~~~~~~~~~~~~i~~~---  257 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATE--CLNPKDYDKPIYEVICEK---  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcE--EEecccccchHHHHHHHH---
Confidence            345678999999863 677777888764 2389999999998887754    45431  11111    222223222   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                      . .+.+|+||-....   ...++.+.++|++| |.++.-..
T Consensus       258 t-~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          258 T-NGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             T-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             h-CCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEcc
Confidence            1 2479999854432   34578889999999 99987543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.29  E-value=0.014  Score=51.56  Aligned_cols=98  Identities=10%  Similarity=0.107  Sum_probs=66.1

Q ss_pred             HhhcCCCEEEEEc--CccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHh
Q 024097          115 VQILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALIL  189 (272)
Q Consensus       115 ~~~~~~~~VLEiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~  189 (272)
                      ....++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..   +..+.+...  
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~--  227 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQE--  227 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH--
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHh--
Confidence            3456788999999  34677888888876  4699999999888777654    4532   12221   222222222  


Q ss_pred             CCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                       . ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       228 -~-~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          228 -Y-PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             -C-TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             -c-CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence             1 2479999865543    46788889999999998744

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.27  E-value=0.0053  Score=53.71  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=64.8

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-+|+|  .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+...   ...
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~---~~~  211 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMEL---TNG  211 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHH---TTT
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHH---hCC
Confidence            44577899999986  577777788765  4799999999998887765    343311111112222222222   123


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|+||-......    .....+.|++||.++.-..
T Consensus       212 ~g~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          212 IGADAAIDSIGGPD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SCEEEEEESSCHHH----HHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCChh----HHHHHHHhcCCCEEEEEee
Confidence            47999986554332    2334579999999998654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.25  E-value=0.0065  Score=52.77  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=65.3

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..+..+....+.+..+..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLELTDGK  208 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHhCCC
Confidence            456789999883  4677777777765  4699999999998887764    3432   122221112222222111235


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||-....    ..++.+.+.|++||.++.-..
T Consensus       209 g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence            79998865543    357788999999999998543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.22  E-value=0.017  Score=51.22  Aligned_cols=101  Identities=16%  Similarity=0.239  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc----ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG----LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-..    +..+.+....  
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~~~~~~--  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGATE--CVNPQDYKKPIQEVLTEMS--  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCce--EecccccchhHHHHHHHHh--
Confidence            345678999999864 677777888764 2389999999998887754    45421  11111    1222232221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                        .+.+|+||-....   ...++.+.+.|++| |.+++-..
T Consensus       259 --~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 --NGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             --TSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             --CCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence              2479999855432   24577888999999 99987543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.22  E-value=0.0055  Score=53.45  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..+..+....+......
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFTNG  215 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHTTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHhCC
Confidence            3456789999994  4577777778775  4799999999988776654    3432   22222111222222211123


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||-....    ..++.+.+.|++||.++.-.
T Consensus       216 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            579999865543    35777888999999999854

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.18  E-value=0.0096  Score=52.15  Aligned_cols=100  Identities=13%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...-+... .+..+.+...   ...
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~~~~v~~~---~~~  225 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGWAKAVREA---TGG  225 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTHHHHHHHH---TTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhHHHHHHHH---hCC
Confidence            3456789999996  4677888888876  4699999999998887765    3433111111 2222222222   112


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||-.....    .++.+.+.|++||.+++-.
T Consensus       226 ~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence            4799998655432    4677889999999999754

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.17  E-value=0.0074  Score=53.61  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=67.5

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE--EcChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~  192 (272)
                      ...++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+...  ..+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~----  260 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT----  260 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc----
Confidence            34567899999987 4777788888764 2389999999998887754    4543211111  112223333321    


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVL  231 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~~  231 (272)
                      .+.+|+||-....   ...++.+.+.|++| |.+++-...
T Consensus       261 ~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          261 DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEccc
Confidence            2479999865432   34678889999997 999886554

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.14  E-value=0.044  Score=48.66  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=65.2

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC---hhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~  192 (272)
                      ..++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|..   .++..+   ..+....+.+...
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhC
Confidence            4567899999966 4667777888753 2599999999988877753    4542   223222   2222222221111


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...+|+||-.....   ..++.+.+.|++||.++.-..
T Consensus       265 g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          265 GRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence            23699998654422   246778889999999987543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.12  E-value=0.023  Score=49.64  Aligned_cols=101  Identities=23%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+...     .+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~-----~~  229 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----VG  229 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH-----hC
Confidence            45677899999986 477777788775  4699999999988877654    454210111111222222222     14


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||.....   ...++.+.+.|++||.++.-..
T Consensus       230 ~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          230 GVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            69999865542   2457788899999999987543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.11  E-value=0.03  Score=49.01  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+|. |..+..+++..+  .+|++++.+++..+.+++    .|..  . ++ .+...    +     ..
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~--~-v~-~~~~~----~-----~~  233 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS----MGVK--H-FY-TDPKQ----C-----KE  233 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH----TTCS--E-EE-SSGGG----C-----CS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cCCC--e-ec-CCHHH----H-----hc
Confidence            456788999999874 777888888764  699999999998887754    4543  1 22 33211    1     23


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||-......   .++.+.+.|++||.+++-..
T Consensus       234 ~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          234 ELDFIISTIPTHY---DLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             CEEEEEECCCSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCEEEECCCcHH---HHHHHHHHHhcCCEEEEECC
Confidence            7999986544332   36778899999999998543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.10  E-value=0.018  Score=50.97  Aligned_cols=101  Identities=16%  Similarity=0.236  Sum_probs=65.7

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc----ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG----LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++    .|...  .+-..    +..+.+....  
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~~~~v~~~~--  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATE--CINPQDFSKPIQEVLIEMT--  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSE--EECGGGCSSCHHHHHHHHT--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCce--EeccccccccHHHHHHHHh--
Confidence            345678999999764 667777887754 2389999999998887764    35431  11111    2222232221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                        .+.+|+||-....   ...++.+.++|+++ |.++.-..
T Consensus       258 --~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 --DGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             --TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             --CCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence              2479999855432   24578889999999 99987543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.06  E-value=0.012  Score=51.21  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~  192 (272)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .+..  ..+-.  .+..+.+....   .
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~i~~~~---~  211 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCH--HTINYSTQDFAEVVREIT---G  211 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHH---T
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC--EEEECCCHHHHHHHHHHh---C
Confidence            346789999995  5677777777765  4799999999988777654    3432  12211  12222222221   1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...+|++|.....    ..++.+.+.|++||.++.-.
T Consensus       212 ~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          212 GKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            2469999866543    35778889999999998743

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.025  Score=49.47  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---cChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+..  ..+-.   .+..+.+....  
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~--  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGE--VFIDFTKEKDIVGAVLKAT--  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCC--EEEETTTCSCHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCc--eEEecCccHhHHHHHHHHh--
Confidence            3456789999998  4666777777765  4699999999887766654    3432  12211   12222232221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                        .+.+|+||.....   ...++.+.+.|++||.++.-..
T Consensus       236 --~~~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 --DGGAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             --TSCEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             --CCCCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence              1279999876542   2467888999999999987543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.0084  Score=52.04  Aligned_cols=100  Identities=18%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+..  ..+-..+ .+....+.......
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~~~~~-~~~~~~~~~~~~~~  208 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW--QVINYRE-EDLVERLKEITGGK  208 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS--EEEETTT-SCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--EEEECCC-ccHHHHHHHHhCCC
Confidence            446789999983  4566666666654  4699999999988777765    3432  2221111 12222221111124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|++|.... .   ..++.+.+.|++||.++.-.
T Consensus       209 ~~D~vi~~~g-~---~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          209 KVRVVYDSVG-R---DTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CEEEEEECSC-G---GGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCc-h---HHHHHHHHHhcCCCEEEEEe
Confidence            6999987665 2   35778889999999998754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.86  E-value=0.011  Score=51.77  Aligned_cols=101  Identities=15%  Similarity=0.113  Sum_probs=65.7

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  193 (272)
                      .. ++++||-+|+|. |..+..+++...++.+|++++.+++..+.+++    .|..   .++..+- .+....+..   .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~---g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD---G  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT---T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc---C
Confidence            45 788999999863 66777788776114689999999988887765    3532   1221111 122222211   2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|+||-....   ...++.+.+.|++||.++.-..
T Consensus       237 ~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          237 LGASIAIDLVGT---EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             CCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeCC
Confidence            379999865442   2357788899999999987543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.82  E-value=0.017  Score=50.76  Aligned_cols=100  Identities=10%  Similarity=0.115  Sum_probs=62.6

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..  . ++..+-.+....+.......
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~--~-~~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAH--E-VFNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--E-EEETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCC--E-EEeCCCchHHHHHHHHcCCC
Confidence            456789999996  4566677777765  4799999999987776543    3432  1 12111112222221111124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|+||.....    ..++.+.+.|++||.++.-.
T Consensus       239 ~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          239 GIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             CEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            79999865542    24677889999999998754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.81  E-value=0.015  Score=51.01  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---cChhHHHHHHHhCCCC
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILNGEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~  193 (272)
                      ++++||-+|+| .|..+..+++..+  . +|++++.+++..+.+++    .|..   .++.   .+..+.+...   ...
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~---~~g  234 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASG--AYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDI---TDG  234 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHH---TTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHH---cCC
Confidence            67899999985 3667777777754  5 89999999988777754    3432   1221   1222222222   112


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||-....   ...++.+.+.|++||.++.-.
T Consensus       235 ~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          235 NGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             SCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence            469999865442   345778889999999998754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.81  E-value=0.014  Score=50.94  Aligned_cols=99  Identities=12%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHhC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~  190 (272)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++.   .|..  ..+-..   +..+.+....  
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~~~--  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTK---FGFD--DAFNYKEESDLTAALKRCF--  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---SCCS--EEEETTSCSCSHHHHHHHC--
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cCCc--eEEecCCHHHHHHHHHHHh--
Confidence            3456789999997  4677777777765  46999999998877766532   3432  222111   2223333321  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                        .+.+|+||.....    ..++.+.+.|++||.+++-.
T Consensus       223 --~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 --PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             --CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence              2579999876543    36788899999999998743

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.80  E-value=0.024  Score=49.54  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=64.6

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..  . ++...-.+....+.......
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~--~-~~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGAD--E-TVNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS--E-EEETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC--E-EEcCCcccHHHHHHHHhCCC
Confidence            346789999998  5677888888875  4699999999988877754    3432  1 22211112222221111124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+|+||.... ..   .++.+.+.|+++|.++.-.
T Consensus       235 ~~d~vi~~~g-~~---~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          235 GADKVVDHTG-AL---YFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             CEEEEEESSC-SS---SHHHHHHHEEEEEEEEESS
T ss_pred             CceEEEECCC-HH---HHHHHHHhhccCCEEEEEe
Confidence            7999987665 22   4677888999999998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.71  E-value=0.032  Score=48.82  Aligned_cols=103  Identities=15%  Similarity=0.234  Sum_probs=65.3

Q ss_pred             HhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC--hhHHHHHHHhC
Q 024097          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILN  190 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~  190 (272)
                      ....++++||-+|+|  .|..+..+++... +.+|+++|.+++..+.+++    .|..  ..+-..+  ..+.+....  
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~--  236 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRIT--  236 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT--
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHHh--
Confidence            345577899999987  4556666666651 4699999999988877754    3432  2222121  212222221  


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                       ..+.+|+||.....   ...++.+.+.|++||.++.-..
T Consensus       237 -~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          237 -ESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             -TTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCS
T ss_pred             -cCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEECC
Confidence             11479999866543   2357788899999999987543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.68  E-value=0.019  Score=50.53  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=64.8

Q ss_pred             hcCCCEEEEEc--CccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~----~~  234 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET----GQ  234 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----SS
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh----CC
Confidence            45678999985  33577777778775  4799999999998887765    3432111111122323333221    35


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|+||-.....    .++.+.+.|++||.++.-..
T Consensus       235 g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          235 GVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             CEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             CceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence            799988665543    46778889999999987543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.45  E-value=0.012  Score=49.52  Aligned_cols=52  Identities=19%  Similarity=0.201  Sum_probs=40.3

Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc--c---------------chHHHHHHHHccCCCCcEEEEe
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK--R---------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~--~---------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+++++|+.+.+..+.    +++||+||+|.+-  .               .....++.+.++|+|||.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            5688999998877652    4689999999872  1               2345677778999999999885

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.44  E-value=0.013  Score=51.15  Aligned_cols=54  Identities=11%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-----------------chHHHHHHHHccCCCCcEEEEe
Q 024097          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       171 ~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-----------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++.++++||+.+.+..+    .+++||+||+|.+-.                 .....++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l----~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGS----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhC----CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            46889999998876543    247899999998721                 2456778888999999999884

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.43  E-value=0.05  Score=47.83  Aligned_cols=100  Identities=21%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh-HHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA-DSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~  192 (272)
                      ....++++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..+-. +....+     
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~-----  240 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY-----  240 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS-----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh-----
Confidence            345578899999985 366777778775  4689999999998887765    3532   22222111 222222     


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .+.+|+||-...... ...++.+.+.|++||.++.-.
T Consensus       241 ~~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence            247999986544300 113566788999999998743

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.43  E-value=0.036  Score=48.66  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             HhhcCC--CEEEEEcC--ccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHH
Q 024097          115 VQILGA--QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKAL  187 (272)
Q Consensus       115 ~~~~~~--~~VLEiG~--G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~  187 (272)
                      ....++  ++||-.|+  |.|..+..+++..  ++ +|++++.+++..+.+++.   .|..  ..+-..  +..+.+...
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD--AAINYKKDNVAEQLRES  226 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS--EEEETTTSCHHHHHHHH
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc--eEEecCchHHHHHHHHh
Confidence            344567  89999997  4566666667664  46 999999998776665442   3432  222111  222222222


Q ss_pred             HhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          188 ILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                         . .+.+|++|.....    ..++.+.++|++||.+++-..
T Consensus       227 ---~-~~~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          227 ---C-PAGVDVYFDNVGG----NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             ---C-TTCEEEEEESCCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---c-CCCCCEEEECCCH----HHHHHHHHHhccCcEEEEECC
Confidence               1 1379999876652    567888999999999987543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.42  E-value=0.068  Score=45.68  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=63.3

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  193 (272)
                      ..++++||-+|+  |.|..+..+++..+  .+|++++.+++..+.+++    .|..   .++..+- .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            456789999997  46777788888764  699999999988777654    4532   1222111 2222222      


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||- ...    ..++.+.+.|+++|.++.-.
T Consensus       188 ~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          188 GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence            57999987 543    25778899999999998743

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.42  E-value=0.065  Score=47.25  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             CCCEEEEEc-Cc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG-~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++++||-+| +| .|..+..+++.+. +.+|++++.+++..+.+++    .|..   .++... .+....+... ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~v~~~-~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAEVAAL-GLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHHHHTT-CSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHHHHHh-cCCCc
Confidence            567899998 44 5778888888643 5799999999988877754    4543   122111 1222222222 23589


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+||-...   ....++.+.++|++||.+++-
T Consensus       241 Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence            98885443   234678888999999999874

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.41  E-value=0.041  Score=48.06  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-+|+  |.|..+..+++..  +++|+++ .+++..+.+++    .|... +. ...+..+.+....   ..
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~---~~  214 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT---AG  214 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH---TT
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh---cC
Confidence            3456789999994  4577888888875  4699999 88887776654    45432 22 1122223222221   13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+||-....    ..++.+.+.|+++|.++.-
T Consensus       215 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             CCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            579988865442    4677888999999999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.40  E-value=0.075  Score=39.98  Aligned_cols=93  Identities=14%  Similarity=0.094  Sum_probs=58.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fD  197 (272)
                      .+|+=+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .+    +.++.+|+.+.  +...    .-..+|
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a----~i~~ad   73 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA----HLECAK   73 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT----TGGGCS
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc----CcccCC
Confidence            47888887  556666665542 25689999999988776543    22    67888988652  2221    125789


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++..+.......+-...+.+.|+..++.
T Consensus        74 ~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           74 WLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            998765543322223334566677777665

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.36  E-value=0.087  Score=45.25  Aligned_cols=104  Identities=15%  Similarity=0.034  Sum_probs=66.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ...+++|+-||.|..++.+.++ +-... |.++|+++.+.+.-+.|+.      ...++.+|..+........  .+.+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~--~~~~D   85 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE--WGPFD   85 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH--TCCCS
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc--cCCcC
Confidence            4568999999999999988875 21222 6999999998877666541      2467788987753321110  24799


Q ss_pred             EEEEcCC---------cc----c----hHHHHHHHHccCCCCc------EEEEeCCC
Q 024097          198 FAFVDAE---------KR----M----YQEYFELLLQLIRVGG------IIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~---------~~----~----~~~~l~~~~~lLkpgG------~lvi~d~~  231 (272)
                      +++...+         ..    +    .-..+-.+.+.++|..      ++++.||.
T Consensus        86 ll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~  142 (295)
T 2qrv_A           86 LVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVV  142 (295)
T ss_dssp             EEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEES
T ss_pred             EEEecCCCccccccCccccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCc
Confidence            9986532         10    1    1111223445567763      89999986

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.35  E-value=0.06  Score=47.26  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             HhhcCC------CEEEEEcCc-cCHHH-HHHH-HHCCCCcE-EEEEeCChh---HHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          115 VQILGA------QRCIEVGVY-TGYSS-LAIA-LVLPESGC-LVACERDAR---SLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       115 ~~~~~~------~~VLEiG~G-~G~~~-~~la-~~~~~~~~-v~~iD~s~~---~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ....++      ++||-+|+| .|..+ ..++ +..  +.+ |++++.+++   ..+.+++    .|.. .+.....+..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~  234 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVE  234 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHH
Confidence            344566      899999975 35566 6677 654  355 999999988   7777654    4532 1211112233


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      + +...     .+.+|+||-....   ...++.+.+.|++||.++.-..
T Consensus       235 ~-i~~~-----~gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          235 D-VPDV-----YEQMDFIYEATGF---PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             G-HHHH-----SCCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             H-HHHh-----CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEeC
Confidence            3 3332     1379999854432   2357788899999999987543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.17  E-value=0.062  Score=46.59  Aligned_cols=95  Identities=15%  Similarity=0.025  Sum_probs=63.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      ++|||+-||.|+.++.+-++ + --.+.++|+++.+.+.-+.|+     .  -.++.+|..+....-     -...|+++
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~-----~~~~D~l~   66 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE-----FPKCDGII   66 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGG-----SCCCSEEE
T ss_pred             CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhh-----CCcccEEE
Confidence            47999999999999988764 2 225689999999888777664     1  267889987743221     25689887


Q ss_pred             EcCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          201 VDAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~------------~~~-----~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ...+            ..+     +.. +-.+.+.++|. ++++.||.
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~-~~r~i~~~~Pk-~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYE-YIRILKQKKPI-FFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHH-HHHHHHHHCCS-EEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHH-HHHHHhccCCe-EEEeeeec
Confidence            4332            111     122 22344567884 78889884

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.16  E-value=0.039  Score=48.45  Aligned_cols=101  Identities=11%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..  .. +..+-.+....+.......
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~--~~-~~~~~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAA--AG-FNYKKEDFSEATLKFTKGA  230 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS--EE-EETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCc--EE-EecCChHHHHHHHHHhcCC
Confidence            456789999984  4566667777764  4799999999988877743    3432  22 2111112222221111124


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+|++|......    .++.+.+.|++||.++.-..
T Consensus       231 ~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          231 GVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             CEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence            799998766543    36677889999999987543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.12  E-value=0.073  Score=46.50  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=62.3

Q ss_pred             CCCEEEEEc-Cc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG-~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++++||-+| +| .|..+..+++..  +++|++++.+++..+.+++    .|... +--...+..+.+...    ....+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~----~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI-VLNHKESLLNQFKTQ----GIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE-EECTTSCHHHHHHHH----TCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEECCccHHHHHHHh----CCCCc
Confidence            678999984 44 577777788875  4699999999988887765    35321 110111222323222    13579


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+||-...   ....++.+.++|++||.++.
T Consensus       219 Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          219 DYVFCTFN---TDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             EEEEESSC---HHHHHHHHHHHEEEEEEEEE
T ss_pred             cEEEECCC---chHHHHHHHHHhccCCEEEE
Confidence            99886443   23457888899999999976

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.01  E-value=0.13  Score=44.70  Aligned_cols=48  Identities=4%  Similarity=0.042  Sum_probs=39.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh---hHHHHHHHHHHHhC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAG  168 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~~  168 (272)
                      .++..|||.-||+|..+....+.   +-+.+++|+++   ..++.++++++..+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            56789999999999988887765   35899999999   99999999987766

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.00  E-value=0.023  Score=48.82  Aligned_cols=53  Identities=17%  Similarity=0.255  Sum_probs=39.4

Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc---c--------------------hHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---M--------------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~---~--------------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++++++|+.+.++.+    .+++||+||+|.+-.   .                    +..+++++.++|+|||.+++.
T Consensus        21 ~~~i~~gD~~~~l~~l----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREVLASF----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHHHTTS----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhhC----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            5899999999876543    247899999997621   0                    123566788999999998764

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.00  E-value=0.11  Score=45.47  Aligned_cols=100  Identities=15%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+++|+.||.|..++.+.++--..-.+.++|+++.+.+.-+.|+.      ...++.+|..+.......   ...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~---~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIK---KWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHH---HTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhc---cCCCCEEE
Confidence            489999999999999988762101357899999998887777652      134567888764332111   13689998


Q ss_pred             EcCC--------c-------c-c-hHHHHHHHHccCC-CCcEEEEeCCC
Q 024097          201 VDAE--------K-------R-M-YQEYFELLLQLIR-VGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~--------~-------~-~-~~~~l~~~~~lLk-pgG~lvi~d~~  231 (272)
                      ...+        .       . . ...+ -.+.+.++ | -++++.||.
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~-~r~i~~~~~P-~~~vlENV~  121 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSFLYL-IGILDQLDNV-DYILMENVK  121 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCHHHH-HHHGGGCTTC-CEEEEEECT
T ss_pred             ecCCCcchhhhhhccCCcCcccccHHHH-HHHHHHhcCC-CEEEEecch
Confidence            6543        0       1 1 2222 23445565 6 578888885

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.87  E-value=0.029  Score=48.83  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=40.9

Q ss_pred             CEEEE-EcChhHHHHHHHhCCCCCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIK-HGLAADSLKALILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~-~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+++ ++|+.+.+..+    .+++||+||+|.+-.              .....+..+.++|+|||.+++.
T Consensus        38 ~~~l~i~gD~l~~L~~l----~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKL----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             EEEEEEECCHHHHHHTS----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhC----ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            46788 99999887655    246899999998722              2345677778999999999885

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.80  E-value=0.038  Score=48.05  Aligned_cols=50  Identities=6%  Similarity=-0.025  Sum_probs=41.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  169 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~  169 (272)
                      ..++..|||..||+|..+....+.   +-+.+++|+++..++.++++++..+.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            356789999999999888776654   45899999999999999999866554

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.74  E-value=0.1  Score=46.04  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             cCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++++||-+|++  .|..+..+++..+  ++|+++. +++..+.+++    .|...-+.....+..+.+..+.    .+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT----KNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT----TTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc----cCC
Confidence            567899999983  7888888998864  6888885 7877776654    5543212221223333333321    245


Q ss_pred             eEEEEEcCCccchHHHHHHHHccC-CCCcEEEEeC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lL-kpgG~lvi~d  229 (272)
                      +|+||-....   ...++.+.+.| ++||.++.-.
T Consensus       232 ~d~v~d~~g~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence            9998854432   23577778888 6999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.67  E-value=0.088  Score=45.92  Aligned_cols=74  Identities=7%  Similarity=-0.026  Sum_probs=51.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEE-EEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH-HHHhCCCCCceE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCL-VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYD  197 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v-~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~fD  197 (272)
                      ..+++|+.||.|..++.+.++--+.-.+ .++|+++.+.+.-+.|+..     .  ++.+|..+... .+.    ...+|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI~~~~~~~i~----~~~~D   78 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E--VQVKNLDSISIKQIE----SLNCN   78 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCTTTCCHHHHH----HTCCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCChhhcCHHHhc----cCCCC
Confidence            4589999999999999988751001246 7999999999888888732     1  45677766432 221    13689


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      +++...+
T Consensus        79 il~ggpP   85 (327)
T 3qv2_A           79 TWFMSPP   85 (327)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9986544

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.65  E-value=0.054  Score=49.31  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-------------
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-------------  180 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-------------  180 (272)
                      ...++++||-+|+  |.|..+..+++..  ++++++++.+++..+.+++    .|...-+.....|.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            3456789999987  4677888888876  4799999999988877754    45431111111111             


Q ss_pred             ----hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          181 ----ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       181 ----~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                          .+.+..+.   +...+|+||-....    ..++.+.++|++||.+++-.
T Consensus       299 ~~~~~~~i~~~t---~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELT---GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHH---TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHh---CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence                02222221   13579988864432    46788889999999999854

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=94.54  E-value=0.48  Score=36.50  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .-|||+|-|+|..=-.+.+.+| +-+|+.+|..-....        ....+.-.++.||+.+.++...... ..+.-++-
T Consensus        42 GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~~~~~r~-g~~a~LaH  111 (174)
T 3iht_A           42 GPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLPATLERF-GATASLVH  111 (174)
T ss_dssp             SCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHHHHHHHH-CSCEEEEE
T ss_pred             CceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHHHHHHhc-CCceEEEE
Confidence            4699999999999999999998 678999997532110        1112234689999999877632110 23444555


Q ss_pred             EcCCccc---hHH----HHHHHHccCCCCcEEEEeCCC
Q 024097          201 VDAEKRM---YQE----YFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~~~~---~~~----~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .|-...+   ...    .-..+.++|.|||+++-..-+
T Consensus       112 aD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          112 ADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             ECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            5543222   111    223345899999999987766

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.53  E-value=0.12  Score=45.24  Aligned_cols=99  Identities=17%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             hhc-CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QIL-GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~-~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ... ++++||-+|+| .|..+..+++..+  ++|++++.+++..+.+++   ..|... + +-..+ .+.+...     .
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~---~lGa~~-v-i~~~~-~~~~~~~-----~  242 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQ---DLGADD-Y-VIGSD-QAKMSEL-----A  242 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHT---TSCCSC-E-EETTC-HHHHHHS-----T
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH---HcCCce-e-ecccc-HHHHHHh-----c
Confidence            344 77899999976 3666677777654  699999999887766552   245432 1 11122 2222222     2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.+|+||-......   .++.+.++|++||.++.-..
T Consensus       243 ~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          243 DSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             TTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChH---HHHHHHHHhccCCEEEEeCC
Confidence            47999986544322   25567789999999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.52  E-value=0.2  Score=44.01  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++.   .|..   .++..+-.+.+...     .+.+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~-----~~~~D  253 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAA-----AGTLD  253 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHT-----TTCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHh-----hCCCC
Confidence            67899999975 356666777765  46999999999877665532   3432   22222112223322     24799


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||-......   .++.+.+.|+++|.++.-.
T Consensus       254 ~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          254 GIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            9986554322   2445677889999988743

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.48  E-value=0.094  Score=47.50  Aligned_cols=101  Identities=17%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-------------
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-------------  180 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-------------  180 (272)
                      ...++++||-+|+  |.|..+..+++..  ++++++++.+++..+.+++    .|...-+.....+.             
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence            3456789999986  3577777788775  4799999999888777643    45432111111111             


Q ss_pred             -----hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          181 -----ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       181 -----~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                           .+.+....    ...+|+||-....    ..++.+.++|++||.++.-..
T Consensus       291 ~~~~~~~~v~~~~----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          291 TGRKLAKLVVEKA----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHH----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESCC
T ss_pred             hhhHHHHHHHHHh----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEec
Confidence                 11111111    2569998865543    357788899999999998543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.45  E-value=0.39  Score=35.23  Aligned_cols=96  Identities=16%  Similarity=0.079  Sum_probs=55.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .++|+=+|+  |..+..+++.+. .+.+|+.+|.+++..+..++.   .+    +.++.+|..+.. .+... ....+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~-~l~~~-~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIK-TLEDA-GIEDADM   72 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHH-HHHHT-TTTTCSE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHH-HHHHc-CcccCCE
Confidence            357888876  667776666542 246899999998766544321   12    456777764321 11111 1256899


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |++..+.......+..+.+.+.++-+++
T Consensus        73 vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           73 YIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            9987654433334445555677764443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.16  E-value=0.18  Score=37.56  Aligned_cols=95  Identities=8%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .++|+-+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .+    +.++.+|..+.. .+... ....+|+
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~-~l~~~-~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDES-FYRSL-DLEGVSA   73 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHH-HHHHS-CCTTCSE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHH-HHHhC-CcccCCE
Confidence            357888888  557777766553 25689999999987765543    22    577888886531 11111 1357899


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+............+.+. ...++.
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             EEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            9886653222222333334444 444443

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.05  E-value=0.045  Score=47.74  Aligned_cols=94  Identities=11%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---cChhHHHHHHHhCCCC
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILNGEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~  193 (272)
                      ++++||-+|+| .|..+..+++..+  . +|++++.+++..+.+++.      .+  .++.   .+..+.+....    .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~G--a~~Vi~~~~~~~~~~~~~~l------a~--~v~~~~~~~~~~~~~~~~----~  229 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASG--AGPILVSDPNPYRLAFARPY------AD--RLVNPLEEDLLEVVRRVT----G  229 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTT--CCSEEEECSCHHHHGGGTTT------CS--EEECTTTSCHHHHHHHHH----S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh------HH--hccCcCccCHHHHHHHhc----C
Confidence            67899999985 3667777787754  5 899999998877666542      11  1121   12223233221    2


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|+||-....   ...++.+.+.|+++|.++.-.
T Consensus       230 ~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          230 SGVEVLLEFSGN---EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            469999865432   245778889999999998753

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.76  E-value=0.14  Score=45.27  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=60.2

Q ss_pred             hcCCCEEEEEc-C-ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVG-V-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG-~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-+| + |.|..+..+++..+  ++|++++ +++..+.++    ..|..   .++..+-.+....+..   ..
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~---~~  247 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS---LK  247 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT---SC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh---cC
Confidence            45678999998 3 36777788888764  6899998 666666553    34543   1222111122222221   24


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+||-.....  ...++...+.|++||.++.-
T Consensus       248 g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          248 PFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             CCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            799988654422  12356778999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.75  E-value=0.15  Score=44.41  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=57.7

Q ss_pred             CEEEEE-cCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          121 QRCIEV-GVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       121 ~~VLEi-G~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++||=. |+| .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.....   ...+|+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~---~~g~D~  236 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK---AEQPRI  236 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH---HHCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc---CCCCcE
Confidence            566644 332 455666667665  4699999999998887764    45321111111223232322211   136999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ||-.....    .++.+.+.|++||.++.-..
T Consensus       237 vid~~g~~----~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          237 FLDAVTGP----LASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEESSCHH----HHHHHHHHSCTTCEEEECCC
T ss_pred             EEECCCCh----hHHHHHhhhcCCCEEEEEec
Confidence            88654422    34678889999999998543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.68  E-value=0.14  Score=45.02  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh---hHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      +++||-+|+| .|..+..+++..  +++|++++.++   +..+.+++    .|.. .+  -..+..+.+...     .+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v--~~~~~~~~~~~~-----~~~  246 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YY--NSSNGYDKLKDS-----VGK  246 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EE--ECTTCSHHHHHH-----HCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-ee--chHHHHHHHHHh-----CCC
Confidence            7899999984 255556666654  46999999998   77666654    3432 12  111222222221     257


Q ss_pred             eEEEEEcCCccchHHHH-HHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l-~~~~~lLkpgG~lvi~d~  230 (272)
                      +|+||.......   .+ +.+.+.|++||.++.-..
T Consensus       247 ~d~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          247 FDVIIDATGADV---NILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EEEEEECCCCCT---HHHHHHGGGEEEEEEEEECSC
T ss_pred             CCEEEECCCChH---HHHHHHHHHHhcCCEEEEEec
Confidence            999986654332   35 788899999999987544

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.57  E-value=0.061  Score=46.51  Aligned_cols=93  Identities=14%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             EEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHhCCCCCceEE
Q 024097          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~~fDl  198 (272)
                      +||-+|+  |.|..+..+++..+  ++|++++.+++..+.+++    .|...  .+-..+. .+....+    ..+.+|+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~~~----~~~~~d~  219 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKE--VLAREDVMAERIRPL----DKQRWAA  219 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSE--EEECC---------C----CSCCEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcE--EEecCCcHHHHHHHh----cCCcccE
Confidence            7999996  56778888888764  689999999888777754    45431  1111111 1111111    1247999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ||-.....    .++.+.+.|++||.++.-..
T Consensus       220 vid~~g~~----~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          220 AVDPVGGR----TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             EEECCcHH----HHHHHHHhhccCCEEEEEee
Confidence            88654432    46778899999999987543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.41  E-value=0.26  Score=43.37  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|+=+|+| .|..+..+++..+  .+|+.+|.+++..+.+++....     .+.....+..+....+      ..+
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~  231 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV------AEA  231 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH------HTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH------cCC
Confidence            356899999985 3334444555543  5999999999888777665421     2333333332322222      368


Q ss_pred             EEEEEcCCccc--hHH-HHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~--~~~-~l~~~~~lLkpgG~lvi~  228 (272)
                      |+|+.......  ... ..+...+.+++||+++--
T Consensus       232 DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          232 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence            99986543221  001 134567889999977653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=93.33  E-value=0.26  Score=43.10  Aligned_cols=108  Identities=12%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             hhcCC-CEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---cChhHHHHHHHh
Q 024097          116 QILGA-QRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALIL  189 (272)
Q Consensus       116 ~~~~~-~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~  189 (272)
                      ...++ ++||-+|+  |.|..+..+++..  +++++++..+++..+..++.++..|...-+....   .+..+.+.....
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            34467 89999986  4677788888875  4688888765554222222334456432111110   122222322210


Q ss_pred             CCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++ ...+|+||-.....   ... .+.++|++||.++.-..
T Consensus       241 ~~-~~g~Dvvid~~G~~---~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          241 QS-GGEAKLALNCVGGK---SST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HH-TCCEEEEEESSCHH---HHH-HHHHTSCTTCEEEECCC
T ss_pred             cc-CCCceEEEECCCch---hHH-HHHHHhccCCEEEEecC
Confidence            00 24799998554322   223 66799999999987543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.31  E-value=0.66  Score=37.75  Aligned_cols=96  Identities=18%  Similarity=0.106  Sum_probs=60.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      .++|+=+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+.. .+... .-...|.|
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~-~l~~a-~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVS-DLEKA-NVRGARAV   75 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHH-HHHHT-TCTTCSEE
T ss_pred             CCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHH-HHHhc-CcchhcEE
Confidence            457888887  7888888888864334999999988765432     1    3788999986521 11111 13578999


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++..+............+.+.|+..++..
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            88655433333344455667777666653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.26  E-value=0.26  Score=43.72  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=56.9

Q ss_pred             cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|+=+|+|. |......++.+  +.+|+++|.+++..+.+++.+   +.  .+.....+..+ +....     ..+
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~-l~~~l-----~~a  232 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYE-LEGAV-----KRA  232 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHH-HHHHH-----HHC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHH-HHHHH-----cCC
Confidence            4678999999852 33334444444  469999999998776665432   32  22222222222 22221     357


Q ss_pred             EEEEEcCCccc--h-HHHHHHHHccCCCCcEEEEeC
Q 024097          197 DFAFVDAEKRM--Y-QEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~~~~--~-~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |+|+.......  . .-+.+...+.++|||+|+.-.
T Consensus       233 DvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          233 DLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             SEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            99987432111  1 112456678899999887543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.22  E-value=0.4  Score=42.30  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|+-+|+  |..+..+++.+ ..+.+|+++|.+++..+.+++.+   +.  .+.....+..+....+      ..+
T Consensus       164 l~~~~V~ViGa--G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~------~~~  230 (369)
T 2eez_A          164 VAPASVVILGG--GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSV------QHA  230 (369)
T ss_dssp             BCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHH------HHC
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHH------hCC
Confidence            45789999998  45554444332 12469999999998776654432   32  2433333333322222      368


Q ss_pred             EEEEEcCCccc--hHH-HHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~~~~--~~~-~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|+.......  ... +.+...+.+++||+|+.-.+.
T Consensus       231 DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          231 DLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             SEEEECCC-------CCSCHHHHTTSCTTCEEEECC--
T ss_pred             CEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC
Confidence            99987654321  111 246677889999987754433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.21  E-value=0.32  Score=37.98  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=56.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-C-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++|+=+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .+    +.++.+|..+. ..+....+...+|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~-~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDP-DFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCH-HHHHTBCSCCCCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCH-HHHHhccCCCCCC
Confidence            457888876  666666666553 2 4589999999987665432    33    45677777542 1111110125689


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +|++..+........-...+.+.|++.++.
T Consensus       108 ~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          108 LVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            999855433222222334455667777775

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.19  E-value=0.057  Score=46.58  Aligned_cols=92  Identities=13%  Similarity=0.095  Sum_probs=61.2

Q ss_pred             EEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       122 ~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +||-+|+  |.|..+..+++..+  ++|++++.+++..+.+++    .|...  .+-..+. +.   . ..-..+.+|+|
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~-~~---~-~~~~~~~~d~v  215 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGANR--ILSRDEF-AE---S-RPLEKQLWAGA  215 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCSE--EEEGGGS-SC---C-CSSCCCCEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCCE--EEecCCH-HH---H-HhhcCCCccEE
Confidence            4998886  46888888998864  699999999998888765    45331  1211111 11   1 11113579988


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      |-....    ..++.+.+.|+++|.++.-..
T Consensus       216 ~d~~g~----~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          216 IDTVGD----KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             EESSCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             EECCCc----HHHHHHHHHHhcCCEEEEEec
Confidence            754332    268889999999999997543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.85  E-value=0.57  Score=41.44  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+.+||.|+.+.|..+.+++..     .++.+.=|--.....+.|++.+++.. .+++...  .+.   +     ...||
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~---~-----~~~~~  102 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD---Y-----PQQPG  102 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC---C-----CSSCS
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc---c-----ccCCC
Confidence            3457999999999999988753     34555435555567788999888864 3665532  121   1     47899


Q ss_pred             EEEEcCCcc--chHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKR--MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|++.-++.  .....+..+...|++|+.+++.
T Consensus       103 ~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          103 VVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             EEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            999876643  3556688888999999988764

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.82  E-value=0.24  Score=43.38  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~  192 (272)
                      ....++++||-+|+| .|..+..+++..+ +++|+++|.+++..+.+++    .|...  .+-..+ ..+.+..+.   .
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~--vi~~~~~~~~~v~~~~---~  251 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGADH--VVDARRDPVKQVMELT---R  251 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCSE--EEETTSCHHHHHHHHT---T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCE--EEeccchHHHHHHHHh---C
Confidence            445678899999985 3556666777662 4699999999988877754    45331  111111 112222221   1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...+|+||-...... ...++.+.++  +||.++.-..
T Consensus       252 g~g~Dvvid~~G~~~-~~~~~~~~~~--~~G~~v~~g~  286 (359)
T 1h2b_A          252 GRGVNVAMDFVGSQA-TVDYTPYLLG--RMGRLIIVGY  286 (359)
T ss_dssp             TCCEEEEEESSCCHH-HHHHGGGGEE--EEEEEEECCC
T ss_pred             CCCCcEEEECCCCch-HHHHHHHhhc--CCCEEEEEeC
Confidence            237999985543221 0146666776  8999887543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.81  E-value=0.59  Score=35.32  Aligned_cols=97  Identities=11%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      .++|+=+|+  |..+..+++.+. .+.+|+.+|.++ +..+..++..     ...+.++.||+.+.  +...    .-..
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a----~i~~   71 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA----GIDR   71 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH----TTTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc----Chhh
Confidence            356777775  777777776653 246899999984 5444333322     12378899998652  2221    1357


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .|+|++...............+.+.|...++.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            89998876544333444455566666666665

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=92.76  E-value=0.14  Score=44.75  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=55.9

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-+|+  +.|..+..+++..+ ..+|++++ +++..+.++     .|...-+. ...+..+.+..+   . .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~---~-~  206 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI---S-A  206 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH---C-T
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh---c-C
Confidence            3457789999997  35667777777654 56899988 555444332     34332111 112233333332   1 3


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +.+|+||-.....    .++.+.++|++||.+++-.
T Consensus       207 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          207 EGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCceEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence            5799998544322    2467889999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.70  E-value=0.097  Score=44.96  Aligned_cols=88  Identities=14%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++++||-+|+| .|..+..+++..+  ++|++++ +++..+.+++    .|..   .++ .| .+   .+     ...
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d-~~---~v-----~~g  199 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK----RGVR---HLY-RE-PS---QV-----TQK  199 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH----HTEE---EEE-SS-GG---GC-----CSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH----cCCC---EEE-cC-HH---Hh-----CCC
Confidence            4567899999986 4777888888764  6999999 9888887765    3532   222 23 11   11     367


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+||-.....    .+..+.+.|++||.++.-
T Consensus       200 ~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          200 YFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             ccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            99888433221    235678999999998875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.47  E-value=1.2  Score=31.46  Aligned_cols=90  Identities=22%  Similarity=0.179  Sum_probs=54.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CC-cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ES-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      .++|+-+|+  |..+..+++.+. .+ .+|+++|.+++..+..+    .    ..+.+..+|..+.  +...     -..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~-----~~~   69 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA-----LGG   69 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH-----TTT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH-----HcC
Confidence            458998988  777777666542 23 68999999987665443    1    2366777776542  2222     247


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+||...+......+.+.+    ...|.-.++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~----~~~g~~~~~   98 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAA----KAAGAHYFD   98 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHH----HHTTCEEEC
T ss_pred             CCEEEECCCchhhHHHHHHH----HHhCCCEEE
Confidence            89999877654444444443    233444543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.47  E-value=0.26  Score=44.55  Aligned_cols=67  Identities=22%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHH----hhcCCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChhHHHHHHHHHHH
Q 024097          100 QMQVSPDQAQLLAMLV----QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYER  166 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~----~~~~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~  166 (272)
                      .+.+++..++++...+    ....+-+|+|+|.|+|..+.-+++.+.    ...+++.||+|+...+.-++.+..
T Consensus       114 APeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          114 APELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3455666666654332    223457999999999999888876542    124899999999998888877764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.45  E-value=0.41  Score=38.62  Aligned_cols=93  Identities=18%  Similarity=0.123  Sum_probs=58.6

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDl  198 (272)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    .+.++.+|+.+.  +...    .-..+|+
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a----~i~~ad~   68 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA----EVSKNDV   68 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH----TCCTTCE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc----CcccCCE
Confidence            5676775  677777776652 356899999999877654322   1    267889998763  2221    1357899


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+.......+....+.+.+...++.
T Consensus        69 vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           69 VVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            98876544444445555555556666654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.07  E-value=0.31  Score=43.86  Aligned_cols=96  Identities=17%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ..+|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .|    +.++.||+.+.. .+... +-...|+
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~-~L~~a-gi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMD-LLESA-GAAKAEV   71 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHH-HHHHT-TTTTCSE
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHH-HHHhc-CCCccCE
Confidence            356887777  566666666542 25689999999998877653    33    567899987631 12111 2357899


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+.......+-...+.+.|+..+++
T Consensus        72 viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           72 LINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            88866544433344555666778766665

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.02  E-value=0.73  Score=37.93  Aligned_cols=83  Identities=23%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      ++++||-.| |+|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.+.-  .
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456788666 66778888877653  36799999999887776666665543  3688899987652  22211100  0


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+.+|+||..+.
T Consensus        80 ~g~id~li~~Ag   91 (276)
T 1wma_A           80 YGGLDVLVNNAG   91 (276)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            147999987653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.02  E-value=0.32  Score=37.02  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=56.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+=+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++   ..    .+.++.+|..+. ..+... ....+
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~-~~l~~~-~~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEF-ETLKEC-GMEKA   85 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSH-HHHHTT-TGGGC
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCH-HHHHHc-CcccC
Confidence            35678999987  566666655442 24689999999876543221   11    245666776432 112111 12468


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |+||+..........+..+.+.+.+...++.
T Consensus        86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           86 DMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            9999876544433344444454555555554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.92  E-value=2.3  Score=35.11  Aligned_cols=85  Identities=15%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G-~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      .+++++|-.|++.+ ..+..+++.+ ..+++|+.++.+++..+.+.+.++..+-. ++.++.+|..+.  ...+.+.  .
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHHHHH
Confidence            36788998886431 2445555443 23689999999998888887777665532 578888887542  1111110  0


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                      .-+..|+++.+.
T Consensus        83 ~~G~iD~lvnnA   94 (256)
T 4fs3_A           83 DVGNIDGVYHSI   94 (256)
T ss_dssp             HHCCCSEEEECC
T ss_pred             HhCCCCEEEecc
Confidence            126899888764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=91.91  E-value=0.42  Score=43.89  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=43.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  184 (272)
                      ..+++|+-||.|+.++.+.++   +. .|.++|+++.+.+.-+.|+.   ......++.+|..+..
T Consensus        88 ~~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhh
Confidence            358999999999999998764   33 48999999988777666652   1112456778887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.89  E-value=0.48  Score=40.83  Aligned_cols=89  Identities=19%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCc--EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH-HHHHHHhCCCCCce
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-SLKALILNGEASSY  196 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~~f  196 (272)
                      ++|.=||+|  ..+..++..+. .+.  +|+++|.+++.++.+++    .|..+  . ...+..+ ..         ...
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~~~---------~~a   95 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVED---------FSP   95 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGGGG---------GCC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHHhh---------ccC
Confidence            688889875  44444444331 133  89999999987766543    34322  1 2223322 11         457


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+||+..+.......++.+.+.+++|.++ ++
T Consensus        96 DvVilavp~~~~~~vl~~l~~~l~~~~iv-~d  126 (314)
T 3ggo_A           96 DFVMLSSPVRTFREIAKKLSYILSEDATV-TD  126 (314)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHSCTTCEE-EE
T ss_pred             CEEEEeCCHHHHHHHHHHHhhccCCCcEE-EE
Confidence            99999887777778888888888887644 44

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.87  E-value=2.3  Score=35.87  Aligned_cols=84  Identities=18%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G-~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      ..++++|-.|++.| ..+..+++.+ ..+.+|+.++.++...+.+++..+..+   ++.++.+|..+.  ...+.+.  .
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            46788999987633 2455554443 236799999999766665555554443   588889987652  1222110  0


Q ss_pred             CCCceEEEEEcCC
Q 024097          192 EASSYDFAFVDAE  204 (272)
Q Consensus       192 ~~~~fDlV~~d~~  204 (272)
                      ..+..|++|..+.
T Consensus       106 ~~g~iD~lVnnAG  118 (293)
T 3grk_A          106 KWGKLDFLVHAIG  118 (293)
T ss_dssp             HTSCCSEEEECCC
T ss_pred             hcCCCCEEEECCc
Confidence            1257899997654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.71  E-value=0.8  Score=39.56  Aligned_cols=95  Identities=17%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      .++|+=+|+  |..+..+++.+...+.|+.+|.+++.++ +++    .    .+.++.||+.+. ..+... +-+..|.|
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~----~----~~~~i~gd~~~~-~~L~~a-~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR----S----GANFVHGDPTRV-SDLEKA-NVRGARAV  181 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH----T----TCEEEESCTTSH-HHHHHT-CSTTEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh----C----CcEEEEeCCCCH-HHHHhc-ChhhccEE
Confidence            457888776  7888888887743334999999998876 443    1    378999999763 222111 23678999


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ++..+.....-..-...+.+.|...++.
T Consensus       182 i~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          182 IVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            8865533322333444566777766665

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.60  E-value=1.6  Score=39.47  Aligned_cols=101  Identities=11%  Similarity=0.200  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH------------HHHhCCCCCEEEEEcChhHHHHH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      .-++|-=||+  |+.+..+|..+..+.+|+++|++++.++..++.            +.. + ..++++. .|..+.+  
T Consensus        35 ~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~t-td~~ea~--  107 (432)
T 3pid_A           35 EFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRAT-TDKHDAY--  107 (432)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEEE-SCHHHHH--
T ss_pred             CCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEEE-cCHHHHH--
Confidence            4457887876  666666665554467999999999988766541            111 1 1133332 2332221  


Q ss_pred             HHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          187 LILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                             ...|+||+..+..           ......+.+.+ |+||.++|.......|
T Consensus       108 -------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          108 -------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG  158 (432)
T ss_dssp             -------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred             -------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence                   4578998865422           24555677778 8998888765555444

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.53  E-value=1.7  Score=36.57  Aligned_cols=133  Identities=23%  Similarity=0.235  Sum_probs=75.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--  191 (272)
                      ..+++.+|--|.+.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+   +  .++..+.+|..+.  ...+.+.-  
T Consensus        26 rL~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           26 RLNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TTTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence            357788888887665 666666654 34689999999998876654433   3  3577888887642  11111100  


Q ss_pred             CCCceEEEEEcCCc-----------cch-----------HHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHh---h
Q 024097          192 EASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK---T  246 (272)
Q Consensus       192 ~~~~fDlV~~d~~~-----------~~~-----------~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~---~  246 (272)
                      .-+..|+++.++..           +++           ....+.+.+.|+++|.||.-.. ..|....|. ...+   .
T Consensus       100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS-~~~~~~~~~-~~~Y~asK  177 (273)
T 4fgs_A          100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS-TAGSTGTPA-FSVYAASK  177 (273)
T ss_dssp             HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC-GGGGSCCTT-CHHHHHHH
T ss_pred             HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee-hhhccCCCC-chHHHHHH
Confidence            12689999876531           111           1123445678888887665322 223222221 1122   2


Q ss_pred             HHHHHHHHHhh
Q 024097          247 ISIRNFNKNLM  257 (272)
Q Consensus       247 ~~~~~~~~~l~  257 (272)
                      -++..|.+.++
T Consensus       178 aav~~ltr~lA  188 (273)
T 4fgs_A          178 AALRSFARNWI  188 (273)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            25666666654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.30  E-value=3.2  Score=34.96  Aligned_cols=83  Identities=13%  Similarity=0.057  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .++++|-.|++. ...+..+++.+ ..+.+|+.++.+++..+.+++..+..+   ++.++.+|..+.  +..+.+.-  .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            567899888754 24555555544 236799999999877666666555544   367888887652  12211100  0


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++..+.
T Consensus       106 ~g~iD~lVnnAG  117 (296)
T 3k31_A          106 WGSLDFVVHAVA  117 (296)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899997654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.24  E-value=0.42  Score=42.42  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (272)
                      .++++|+=+|+| .|..+..+++.++  .+|+.+|.++...+.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            368899999987 3555556666664  689999999887666543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.04  E-value=1.2  Score=38.31  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=54.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-cEEEEEeCChh---HHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-S-GCLVACERDAR---SLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEAS  194 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~-~~v~~iD~s~~---~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  194 (272)
                      ++|.=||+  |..+..++..+.. + .+|+++|.+++   ..+...+.+...|.       .. +..+..         .
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~---------~   86 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGI---------A   86 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGG---------G
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHH---------h
Confidence            57888887  5666666665432 4 58999999973   22222222333342       22 333322         3


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..|+||+..+.......++.+.+.+++|.+++-
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            468998877766666667778888888765553

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.04  E-value=0.57  Score=40.20  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             HHhhcCCCEEEEEc-Cc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG-~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      .....++++||-+| +| .|..+..+++..+  ++|++++ +++..+.++    ..|...   ++..+-.+.....    
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~----~lGa~~---~i~~~~~~~~~~~----  212 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLK----ALGAEQ---CINYHEEDFLLAI----  212 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHH----HHTCSE---EEETTTSCHHHHC----
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHH----HcCCCE---EEeCCCcchhhhh----
Confidence            34556788999986 44 6788888888764  6899987 444455444    356532   2222221211111    


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       -..+|+||-....    ..++.+.+.|++||.++.-
T Consensus       213 -~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          213 -STPVDAVIDLVGG----DVGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             -CSCEEEEEESSCH----HHHHHHGGGEEEEEEEEEC
T ss_pred             -ccCCCEEEECCCc----HHHHHHHHhccCCCEEEEe
Confidence             2579988854432    2247789999999999875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.03  E-value=1.8  Score=35.64  Aligned_cols=105  Identities=20%  Similarity=0.193  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~--~~  192 (272)
                      ..++++|-.|++ |..+..+++.+ ..+.+|+.++.+++.++...+.+     ..++.++.+|..+..  ..+.+.  ..
T Consensus         6 l~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            356788888865 55666666654 24679999999988776655544     236889999886531  111110  00


Q ss_pred             CCceEEEEEcCCcc-----------ch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR-----------MY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-----------~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+..|+++..+...           .+           ....+.+.+.++++|.|+.-
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            25799998765311           11           11344556777778877753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.73  E-value=5.1  Score=31.60  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=56.7

Q ss_pred             EEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +||-+| |+|..+..+++.+ ..+.+|++++.++......        ...+++++.+|..+.....     -+.+|.||
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~-----~~~~d~vi   67 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEAD-----LDSVDAVV   67 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHH-----HTTCSEEE
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhh-----cccCCEEE
Confidence            577676 5788888877765 3357999999987654321        1236899999987632222     25689999


Q ss_pred             EcCCcc-------chHHHHHHHHccCCC-CcEEEEe
Q 024097          201 VDAEKR-------MYQEYFELLLQLIRV-GGIIVID  228 (272)
Q Consensus       201 ~d~~~~-------~~~~~l~~~~~lLkp-gG~lvi~  228 (272)
                      ......       ........+.+.++. |+.+|+-
T Consensus        68 ~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~  103 (224)
T 3h2s_A           68 DALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFI  103 (224)
T ss_dssp             ECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred             ECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence            766431       122334444544443 4555554

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.50  E-value=5  Score=32.93  Aligned_cols=108  Identities=11%  Similarity=0.024  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCc--cCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--
Q 024097          119 GAQRCIEVGVY--TGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (272)
Q Consensus       119 ~~~~VLEiG~G--~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--  191 (272)
                      .++++|-.|++  .| .+..+++.+ ..+.+|+.++.++...+.+++..+..+- .++.++.+|..+.  +..+.+.-  
T Consensus         6 ~~k~vlVTGasg~~G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCc-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHH
Confidence            56789988876  33 455555443 2367999999988776666666554432 2688999887642  12111100  


Q ss_pred             CCCceEEEEEcCCcc------------c---h-----------HHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKR------------M---Y-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~------------~---~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.+|.++..+...            .   +           ....+.+.+.++++|.||.-
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            025789988764311            0   1           11345566788888877763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.22  E-value=1.1  Score=40.72  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  196 (272)
                      .++|+=+||  |..+..+++.+.. +..|+.+|.+++.++.+.+.+       .+..++||+.+.  +...    +-+..
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A----gi~~a   69 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA----GAQDA   69 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH----TTTTC
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc----CCCcC
Confidence            457887666  6788888888753 457999999999887665543       267899999762  3222    24678


Q ss_pred             EEEEEcCC
Q 024097          197 DFAFVDAE  204 (272)
Q Consensus       197 DlV~~d~~  204 (272)
                      |+++.-..
T Consensus        70 d~~ia~t~   77 (461)
T 4g65_A           70 DMLVAVTN   77 (461)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEEcC
Confidence            98876443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=90.12  E-value=0.69  Score=40.59  Aligned_cols=81  Identities=14%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~f  196 (272)
                      +.++|+-|||  |..+..+++.+.....|+..|++.+.++.+++         .+..+..|+.+  .+..+.     ...
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~-----~~~   78 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM-----KEF   78 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH-----TTC
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH-----hCC
Confidence            4568999998  77788778777667899999999876655432         24455566643  233332     567


Q ss_pred             EEEEEcCCccchHHHHHHH
Q 024097          197 DFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~  215 (272)
                      |+|+...+........+.|
T Consensus        79 DvVi~~~p~~~~~~v~~~~   97 (365)
T 3abi_A           79 ELVIGALPGFLGFKSIKAA   97 (365)
T ss_dssp             SEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEecCCcccchHHHHH
Confidence            9988765543333334444

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.91  E-value=5.8  Score=32.85  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCC------------hhHHHHHHHHHHHhCCCCCEEEEEcChhHH--
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERD------------ARSLEVAKKYYERAGVSHKVKIKHGLAADS--  183 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  183 (272)
                      .+++||-.|++ |..+..+++.+ ..+.+|+.+|.+            .+.++.+.+.+...+  .++.++.+|..+.  
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            56788888865 45666666654 236799999987            555666655555544  4689999988653  


Q ss_pred             HHHHHhCC--CCCceEEEEEcCCc---------cch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          184 LKALILNG--EASSYDFAFVDAEK---------RMY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       184 ~~~~~~~~--~~~~fDlV~~d~~~---------~~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..+.+.-  ..+..|+++..+..         +.+           ....+.+.+.++++|.|+.-
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            11111100  02478999876541         111           12345556777888877753

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=89.87  E-value=2.3  Score=38.48  Aligned_cols=101  Identities=15%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHH------------HHhCCCCCEEEEEcChhHHHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~------------~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      .-++-=||+  |+++..+|..+.. +.+|+++|++++.++..++..            ++.-...++++. .|..+.+  
T Consensus         8 ~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea~--   82 (446)
T 4a7p_A            8 SVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEGV--   82 (446)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH--
T ss_pred             ceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHHH--
Confidence            346666766  6666666655432 468999999998876654310            000001234332 2332221  


Q ss_pred             HHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          187 LILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                             ...|+||+.-+.+           .....++.+.+.|++|.++|......
T Consensus        83 -------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~  132 (446)
T 4a7p_A           83 -------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVP  132 (446)
T ss_dssp             -------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCC
T ss_pred             -------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence                   4568998864322           25667778888999988777654433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.85  E-value=1.5  Score=36.54  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=53.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-Cc--EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC-ce
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SY  196 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~-~f  196 (272)
                      ++|.=||+  |..+..++..+.. +.  +|+++|.+++..+.++    ..|...  . ...+..+.         -. ..
T Consensus         2 ~~I~iIG~--G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~---------~~~~a   63 (281)
T 2g5c_A            2 QNVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV---------EDFSP   63 (281)
T ss_dssp             CEEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG---------GGTCC
T ss_pred             cEEEEEec--CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH---------hcCCC
Confidence            36777887  4555555444321 23  7999999988776554    234321  1 12233221         13 67


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+||+..+.......++.+.+.++++.+++
T Consensus        64 DvVilavp~~~~~~v~~~l~~~l~~~~iv~   93 (281)
T 2g5c_A           64 DFVMLSSPVRTFREIAKKLSYILSEDATVT   93 (281)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence            999988776666677777778888877554

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=89.81  E-value=0.68  Score=38.13  Aligned_cols=87  Identities=14%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-Cc----EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~~----~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ++|.=||+|  ..+..++..+.. +.    +|+.+|.+++..+...+.+   +    +.. ..+..+..         ..
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g----~~~-~~~~~e~~---------~~   63 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---G----LTT-TTDNNEVA---------KN   63 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---C----CEE-CSCHHHHH---------HH
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---C----CEE-eCChHHHH---------Hh
Confidence            367778875  455555444321 22    7999999998776654432   3    221 22333322         24


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      .|+||+..........++.+.+.+++|.+++
T Consensus        64 aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           64 ADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             CSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            6999987766667777888888888877655

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=89.72  E-value=0.098  Score=45.24  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=60.9

Q ss_pred             CCC-EEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          119 GAQ-RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       119 ~~~-~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      +++ +||-+|+  |.|..+..+++..+  .+|++++.+++..+.+++    .|..   .++  |..+........-....
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~---~v~--~~~~~~~~~~~~~~~~~  217 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGAS---EVI--SREDVYDGTLKALSKQQ  217 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCS---EEE--EHHHHCSSCCCSSCCCC
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCc---EEE--ECCCchHHHHHHhhcCC
Confidence            343 8999996  46777778887754  689999999888777754    3532   122  12111000000001246


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|+||-....    ..++.+.+.|++||.++.-..
T Consensus       218 ~d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          218 WQGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             ccEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence            9988865442    257888999999999987543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=89.71  E-value=0.72  Score=40.94  Aligned_cols=103  Identities=16%  Similarity=0.092  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC---------h--------
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---------A--------  180 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---------~--------  180 (272)
                      ++.+|+=||+| .|..+..++..++  .+|+++|.+++..+.+++    .|.    +++..+         .        
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHH----TTC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccchhhhhHHHH
Confidence            67899999997 4555566666654  699999999988776654    231    121100         0        


Q ss_pred             ---hHHHHHHHhCCCCCceEEEEEcCCc---cchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          181 ---ADSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       181 ---~~~~~~~~~~~~~~~fDlV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                         .+.+.+.     -...|+|+.....   ....-+-+...+.+|||++|+--.+...|.+
T Consensus       253 ~~~~~~l~e~-----l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          253 AQQQQALEDA-----ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             HHHHHHHHHH-----HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             hhhHHHHHHH-----HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence               1122222     2578999865311   1111123677788999887765545455543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.67  E-value=6.2  Score=32.63  Aligned_cols=85  Identities=16%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .+++||-.|+ +|..+..+++.+ ..+.+|+.++.+++..+...+.++..+...++.++.+|..+.  +..+.+.  ...
T Consensus        31 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            5678887774 566777777654 236799999999887777666666666555688889887652  1111110  001


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +.+|+||..+.
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899987653

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=89.14  E-value=0.81  Score=40.72  Aligned_cols=62  Identities=18%  Similarity=0.084  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHh-----hc--CCCEEEEEcCccCHHHHHHHHHCC------CCcEEEEEeCChhHHHHHHHHH
Q 024097          103 VSPDQAQLLAMLVQ-----IL--GAQRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYY  164 (272)
Q Consensus       103 ~~~~~~~~l~~l~~-----~~--~~~~VLEiG~G~G~~~~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~  164 (272)
                      +++..++++...+.     ..  .+-.|+|+|.|+|..+.-+++.+.      ...+++.||+|+...+.-++.+
T Consensus        57 is~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           57 ISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             HCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            45555555544322     11  223799999999999988876542      2358999999998887666555

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.09  E-value=2.9  Score=35.76  Aligned_cols=85  Identities=13%  Similarity=0.068  Sum_probs=57.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .+++||-.|++.| .+..+++.+ ..+.+|++++.+++..+.+.+.+...+...++.++.+|..+.  +..+.+.  ...
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            4678898886644 666666654 346799999999998888777777666544789999998652  1111110  012


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +..|++|..+.
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899997754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=89.00  E-value=4.6  Score=29.85  Aligned_cols=87  Identities=13%  Similarity=0.142  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~  195 (272)
                      ..+++|+=||+  |..+..+++.+. .+.+|+.+|.+++..+...+.+   +    +.... .+..+.+         ..
T Consensus        19 ~~~~~v~iiG~--G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~---~----~~~~~~~~~~~~~---------~~   80 (144)
T 3oj0_A           19 NGGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY---E----YEYVLINDIDSLI---------KN   80 (144)
T ss_dssp             HCCCEEEEECC--SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH---T----CEEEECSCHHHHH---------HT
T ss_pred             ccCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh---C----CceEeecCHHHHh---------cC
Confidence            34889999997  778888777764 2457999999987765433332   3    22222 2232222         35


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +|+|+...+....  .+.  ...+++|+.++
T Consensus        81 ~Divi~at~~~~~--~~~--~~~l~~g~~vi  107 (144)
T 3oj0_A           81 NDVIITATSSKTP--IVE--ERSLMPGKLFI  107 (144)
T ss_dssp             CSEEEECSCCSSC--SBC--GGGCCTTCEEE
T ss_pred             CCEEEEeCCCCCc--Eee--HHHcCCCCEEE
Confidence            7999876553321  111  25677866554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=88.81  E-value=2  Score=37.62  Aligned_cols=91  Identities=8%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ..++|.=||+  |..+..++..+. .+.+|+++|.+++.++.+.+    .+.    . ...+..+....      ....|
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~------a~~~D   83 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK------LVKPR   83 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH------SCSSC
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc------CCCCC
Confidence            3468888887  556666555442 24689999999987654432    232    1 12233333332      24569


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +||+..+.......++.+.+.|++|.+|+
T Consensus        84 vVi~~vp~~~v~~vl~~l~~~l~~g~iiI  112 (358)
T 4e21_A           84 VVWLMVPAAVVDSMLQRMTPLLAANDIVI  112 (358)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            99987665567777888888888876554

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=88.72  E-value=7.3  Score=32.62  Aligned_cols=107  Identities=15%  Similarity=0.212  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhH-HHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++||-.|++ |..+..+++.+ ..+.+|+.++.+++. .+...+.++..+  .++.++.+|..+.  ...+.+.  ..
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            56788888855 55666766655 236799999998753 444444444333  4689999998652  1111110  00


Q ss_pred             CCceEEEEEcCCc----c-----c---h-----------HHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEK----R-----M---Y-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~----~-----~---~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+..|+++..+..    .     .   +           ....+.+.+.++++|.||.-
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence            2578999876431    0     0   1           12345566788888877753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=88.72  E-value=0.46  Score=41.92  Aligned_cols=78  Identities=17%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcCcc---CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYT---GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~---G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      .++.+||-+|+|+   |..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.....   ..
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~---~~  239 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV---ST  239 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH---HH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc---CC
Confidence            5778999885444   55556677765  4689999999988887764    55443222222233333332211   13


Q ss_pred             ceEEEEEcCC
Q 024097          195 SYDFAFVDAE  204 (272)
Q Consensus       195 ~fDlV~~d~~  204 (272)
                      .+|+||-...
T Consensus       240 g~d~v~d~~g  249 (379)
T 3iup_A          240 GATIAFDATG  249 (379)
T ss_dssp             CCCEEEESCE
T ss_pred             CceEEEECCC
Confidence            6998885544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=88.67  E-value=1.3  Score=40.22  Aligned_cols=104  Identities=16%  Similarity=0.202  Sum_probs=56.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHH------------HHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      .+|--||+  ||.++.+|..+. .+.+|+|+|++++.++..++            .+++.--..+++|. .|..+.+   
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~t-t~~~~ai---   95 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFA-ESAEEAV---   95 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEC-SSHHHHH---
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEE-cCHHHHH---
Confidence            46777776  565555444332 24689999999988765532            11111011233332 2222211   


Q ss_pred             HhCCCCCceEEEEEcCCc----------cchHHHHHHHHccCCC---CcEEEEeCCCCCCcc
Q 024097          188 ILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLIRV---GGIIVIDNVLWHGKV  236 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~----------~~~~~~l~~~~~lLkp---gG~lvi~d~~~~g~~  236 (272)
                            ...|++|+.-+.          .......+.+.+.|++   |-++|+.....+|..
T Consensus        96 ------~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtt  151 (444)
T 3vtf_A           96 ------AATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTT  151 (444)
T ss_dssp             ------HTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTT
T ss_pred             ------hcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchH
Confidence                  234777765321          1234455666677774   447777777777764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=88.45  E-value=1.1  Score=40.18  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE--------------EEE--cCh-
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK--------------IKH--GLA-  180 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~--------------~~~--~d~-  180 (272)
                      ++.+|+=||+| .|..+..++..++  ++|+++|.++...+.+++    .|.. .+.              +..  .+- 
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~----~G~~-~~~~~~~~~~d~~~~~~ya~e~s~~~  261 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVAS----LGAK-FIAVEDEEFKAAETAGGYAKEMSGEY  261 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHH----TTCE-ECCCCC-----------------CHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCc-eeecccccccccccccchhhhcchhh
Confidence            67899999998 4556666677664  799999999988776654    2221 000              000  000 


Q ss_pred             ----hHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          181 ----ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       181 ----~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                          .+.+.+..     ...|+||....   .....-+-+...+.+|||++||--.+...|.+
T Consensus       262 ~~~~~~~l~e~l-----~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          262 QVKQAALVAEHI-----AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHHHHHHHH-----HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             hhhhHhHHHHHh-----cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence                01222221     46899986532   11111124677888999887775544455543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=88.30  E-value=2.6  Score=38.46  Aligned_cols=99  Identities=10%  Similarity=0.076  Sum_probs=57.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHH---hCC---------CCCEEEEEcChhHHH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYER---AGV---------SHKVKIKHGLAADSL  184 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~---~~~---------~~~v~~~~~d~~~~~  184 (272)
                      ...++|.-||+|  +.+..++..+. .+.+|+++|++++.++..++....   .++         ..++++. .|..+.+
T Consensus         6 ~~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~   82 (478)
T 2y0c_A            6 HGSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV   82 (478)
T ss_dssp             -CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH
T ss_pred             CCCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh
Confidence            356788888875  44444443332 145899999999887766542100   000         1123332 2332222


Q ss_pred             HHHHhCCCCCceEEEEEcCCc----------cchHHHHHHHHccCCCCcEEEEe
Q 024097          185 KALILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       185 ~~~~~~~~~~~fDlV~~d~~~----------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                               ...|+||+.-+.          ......++.+.+.|++|.+++..
T Consensus        83 ---------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~  127 (478)
T 2y0c_A           83 ---------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK  127 (478)
T ss_dssp             ---------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             ---------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe
Confidence                     346899987543          45666777888889998776554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=88.00  E-value=3.3  Score=36.83  Aligned_cols=89  Identities=9%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--------------CCCEEEEEcChhHHHHHH
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~~  187 (272)
                      +|.=||+  |+.+..++..+..+.+|+++|++++.++..++    .+.              ..++.+. .+..+.+   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~t-~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKAT-LDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEEE-SCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEEe-CCHHHHh---
Confidence            5666766  77777777766545689999999987765432    111              1122321 2222222   


Q ss_pred             HhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097          188 ILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                            ...|+||+..+..           .....++.+.+ +++|.+++.
T Consensus        72 ------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~  115 (402)
T 1dlj_A           72 ------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII  115 (402)
T ss_dssp             ------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             ------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence                  2468998865533           35667777878 888877775

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=87.89  E-value=1.4  Score=40.60  Aligned_cols=88  Identities=10%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...+++|+-+|+| .|......++.+  +.+|+++|.++...+.+++    .|.    ++  .+..+.   +      ..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~---l------~~  329 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEA---I------GD  329 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH---G------GG
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH---H------hC
Confidence            3567899999985 243444444444  4699999999987665543    343    22  233221   1      46


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .|+|+........  +-....+.+|+||+++.
T Consensus       330 aDvVi~atgt~~~--i~~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDI--IMLEHIKAMKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCS--BCHHHHHHSCTTCEEEE
T ss_pred             CCEEEECCCCHHH--HHHHHHHhcCCCcEEEE
Confidence            7999876543331  11245667899998875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.51  E-value=2.9  Score=34.50  Aligned_cols=77  Identities=23%  Similarity=0.224  Sum_probs=46.9

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      .++|+=+|||  ..+..+++.+   + -++++.+|.+.                   ...+.+.+.+...+..-+++.+.
T Consensus        31 ~~~VlVvG~G--g~G~~va~~La~~G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           31 DSRVLIVGLG--GLGCAASQYLASAG-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HCEEEEECCS--HHHHHHHHHHHHHT-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCeEEEEeeC--HHHHHHHHHHHHcC-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            4689999986  3333333332   2 35999999987                   66777777776655433466655


Q ss_pred             cChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          178 GLAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       178 ~d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      .+..+ .+..+.     ..+|+|+...+
T Consensus       108 ~~~~~~~~~~~~-----~~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLDDAELAALI-----AEHDLVLDCTD  130 (249)
T ss_dssp             SCCCHHHHHHHH-----HTSSEEEECCS
T ss_pred             ccCCHhHHHHHH-----hCCCEEEEeCC
Confidence            44432 222221     46899987554

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=87.41  E-value=14  Score=32.05  Aligned_cols=120  Identities=8%  Similarity=-0.033  Sum_probs=69.5

Q ss_pred             HHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--------------------
Q 024097          110 LLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------------  168 (272)
Q Consensus       110 ~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--------------------  168 (272)
                      ++..++... +...|+-+|||.=.-...+.....++.+++=+|. |+.++.=++.+...+                    
T Consensus        80 ~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~  158 (334)
T 3iei_A           80 LIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGH  158 (334)
T ss_dssp             HHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTT
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccc
Confidence            333334443 4678999999887777776653212456777776 555554444444310                    


Q ss_pred             --CCCCEEEEEcChhH--HHHH-HHhCC-CCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          169 --VSHKVKIKHGLAAD--SLKA-LILNG-EASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       169 --~~~~v~~~~~d~~~--~~~~-~~~~~-~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                        ..++.+++..|..+  .+.. +...+ +.+..-+++..+.     ......+++.+.....+|..++.+-+
T Consensus       159 ~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i  231 (334)
T 3iei_A          159 ILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQV  231 (334)
T ss_dssp             EEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             cCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEecc
Confidence              14578999999876  3333 22222 2344456666554     44566778877777665555555433

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=87.31  E-value=0.69  Score=40.34  Aligned_cols=102  Identities=13%  Similarity=0.070  Sum_probs=55.1

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEE-EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH-HHHHHhCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNG  191 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~-~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~  191 (272)
                      ...++++||-+|+  |.|..+..+++..+  ++++ .++.++..-+ -.+.++..|..   .++.  ..+. ...+.+..
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~-~~~~~~~lGa~---~vi~--~~~~~~~~~~~~~  235 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAALG--LRTINVVRDRPDIQK-LSDRLKSLGAE---HVIT--EEELRRPEMKNFF  235 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEECCCSCHHH-HHHHHHHTTCS---EEEE--HHHHHSGGGGGTT
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHcC--CEEEEEecCccchHH-HHHHHHhcCCc---EEEe--cCcchHHHHHHHH
Confidence            4457889999996  46778888888764  5554 4555443211 11223345643   2221  1110 01111111


Q ss_pred             -CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          192 -EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 -~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                       ..+.+|+||-.....    ....+.++|++||.++.-.
T Consensus       236 ~~~~~~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          236 KDMPQPRLALNCVGGK----SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSSCCCSEEEESSCHH----HHHHHHTTSCTTCEEEECC
T ss_pred             hCCCCceEEEECCCcH----HHHHHHHhhCCCCEEEEEe
Confidence             112489887544322    2345789999999998753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=87.20  E-value=1.4  Score=39.42  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHH
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAK  161 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (272)
                      .++.+|+=+|+| .|..+..+++.++  .+|+++|.++...+.++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            357899999987 3555556666664  69999999998776653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=87.04  E-value=1.6  Score=34.77  Aligned_cols=86  Identities=12%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChh-HHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      ++||-+| |+|..+..+++.+.  .+.+|++++.+++ .++...    ..  ..+++++.+|..+.  +....     ..
T Consensus         6 k~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~-----~~   73 (221)
T 3r6d_A            6 XYITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAV-----TN   73 (221)
T ss_dssp             SEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHH-----TT
T ss_pred             EEEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHH-----cC
Confidence            3588777 56777777776543  4679999999876 433221    11  23689999998753  23332     46


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIR  220 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLk  220 (272)
                      +|+||......+..  .+.+.+.++
T Consensus        74 ~d~vv~~ag~~n~~--~~~~~~~~~   96 (221)
T 3r6d_A           74 AEVVFVGAMESGSD--MASIVKALS   96 (221)
T ss_dssp             CSEEEESCCCCHHH--HHHHHHHHH
T ss_pred             CCEEEEcCCCCChh--HHHHHHHHH
Confidence            79999877643332  444444443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=86.99  E-value=0.95  Score=49.77  Aligned_cols=103  Identities=9%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++.+||-.|+  |.|..++.+|+..  +++|++++.+++..+.+++.+...+...   ++...-.+....+....+..
T Consensus      1665 l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~t~g~ 1739 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRHTAGK 1739 (2512)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHTTTSC
T ss_pred             CCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHhcCCC
Confidence            457789998863  5677788888886  4799999999888777766432223322   22222222333332221234


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+||-...    ...++...++|++||.++.-
T Consensus      1740 GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1740 GVDLVLNSLA----EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             CEEEEEECCC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             CceEEEECCC----chHHHHHHHhcCCCcEEEEe
Confidence            6999885432    35688899999999998863

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=86.93  E-value=6.4  Score=32.17  Aligned_cols=84  Identities=18%  Similarity=0.100  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      .++++||-.|++ +|..+..+++.+ ..+.+|+.++.+....+.+++..+..+   ++.++.+|..+.  ...+.+.  .
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            467899988874 355666666654 236799999998766666665554443   377888887652  1221110  0


Q ss_pred             CCCceEEEEEcCC
Q 024097          192 EASSYDFAFVDAE  204 (272)
Q Consensus       192 ~~~~fDlV~~d~~  204 (272)
                      ..+..|++|..+.
T Consensus        89 ~~g~id~lv~nAg  101 (271)
T 3ek2_A           89 HWDSLDGLVHSIG  101 (271)
T ss_dssp             HCSCEEEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence            1257999997653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.91  E-value=3  Score=34.46  Aligned_cols=83  Identities=13%  Similarity=0.044  Sum_probs=56.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  195 (272)
                      .++++|-.|+ +|..+..+++.+ ..+.+|+.++.+++..+...+.+...+...++.++.+|..+.  ...+.+.  -+.
T Consensus         9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~   85 (267)
T 3t4x_A            9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPK   85 (267)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCC
Confidence            4677887775 455677776654 236799999999988877777676655445688888887652  2222221  257


Q ss_pred             eEEEEEcCC
Q 024097          196 YDFAFVDAE  204 (272)
Q Consensus       196 fDlV~~d~~  204 (272)
                      .|+++..+.
T Consensus        86 id~lv~nAg   94 (267)
T 3t4x_A           86 VDILINNLG   94 (267)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899987653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=86.90  E-value=9.6  Score=29.78  Aligned_cols=69  Identities=14%  Similarity=0.011  Sum_probs=46.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ++||-+| |+|..+..+++.+ ..+.+|++++.+++..+..       .  .+++++.+|..+.....     -..+|.|
T Consensus         1 MkvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~--~~~~~~~~D~~d~~~~~-----~~~~d~v   65 (221)
T 3ew7_A            1 MKIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H--KDINILQKDIFDLTLSD-----LSDQNVV   65 (221)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C--SSSEEEECCGGGCCHHH-----HTTCSEE
T ss_pred             CeEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c--CCCeEEeccccChhhhh-----hcCCCEE
Confidence            3677666 5677777777665 2357999999998654321       1  35899999987632222     1568999


Q ss_pred             EEcCC
Q 024097          200 FVDAE  204 (272)
Q Consensus       200 ~~d~~  204 (272)
                      |....
T Consensus        66 i~~ag   70 (221)
T 3ew7_A           66 VDAYG   70 (221)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            97654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=86.74  E-value=1.7  Score=39.29  Aligned_cols=106  Identities=8%  Similarity=0.221  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC------C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN------G  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~------~  191 (272)
                      .+.+.--||+  |+++..+|..+.. +.+|+++|++++.++..++.     .. .+  ..-...+.+......      .
T Consensus        10 ~~~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g-----~~-pi--~epgl~~ll~~~~~~g~l~~tt   79 (431)
T 3ojo_A           10 HGSKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG-----QI-SI--EEPGLQEVYEEVLSSGKLKVST   79 (431)
T ss_dssp             --CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-----CC-SS--CCTTHHHHHHHHHHTTCEEEES
T ss_pred             cCCccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC-----CC-Cc--CCCCHHHHHHhhcccCceEEeC
Confidence            3445556666  5555555544422 46899999999887765431     10 00  111111111110000      0


Q ss_pred             CCCceEEEEEcCCccc------------hHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          192 EASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~------------~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +....|+||+.-+.+.            .....+.+.+.|++|.++|......+|
T Consensus        80 d~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           80 TPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             SCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             chhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence            0134688887644221            344566778889998877765555444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=86.59  E-value=6.1  Score=32.76  Aligned_cols=83  Identities=19%  Similarity=0.129  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++.+|--|.+.| .+..+++.+ ..+++|+.+|.+++.++.+.+.++..+  .++.++.+|..+.  ...+.+.  ..
T Consensus         5 L~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888886665 566666554 247899999999999988888887665  3688999997652  1111110  01


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      -+..|+++.++
T Consensus        82 ~G~iDiLVNNA   92 (254)
T 4fn4_A           82 YSRIDVLCNNA   92 (254)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence            26899998765

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=86.52  E-value=2  Score=34.71  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=56.1

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-S-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f  196 (272)
                      ++||-.| |+|..+..+++.+-. + .+|++++.+++..+.        -...+++++.+|..+.  +....     ..+
T Consensus        24 k~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   89 (236)
T 3qvo_A           24 KNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIHK--------PYPTNSQIIMGDVLNHAALKQAM-----QGQ   89 (236)
T ss_dssp             EEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS--------SCCTTEEEEECCTTCHHHHHHHH-----TTC
T ss_pred             cEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc--------cccCCcEEEEecCCCHHHHHHHh-----cCC
Confidence            4677666 578888888877643 4 589999998764321        1124689999998763  23332     467


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCC--CcEEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRV--GGIIVI  227 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkp--gG~lvi  227 (272)
                      |.||............+.+.+.++.  .|.||.
T Consensus        90 D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~  122 (236)
T 3qvo_A           90 DIVYANLTGEDLDIQANSVIAAMKACDVKRLIF  122 (236)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEE
Confidence            9999776644433333444443332  244543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=86.47  E-value=4.9  Score=36.42  Aligned_cols=76  Identities=20%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +.++|+=+|.  |..+..+|+.+....+|..+|.+++..+...+.+      ++..+++||+.+.  .++...+-+..|+
T Consensus       234 ~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~--~~L~ee~i~~~D~  303 (461)
T 4g65_A          234 PYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQ--ELLTEENIDQVDV  303 (461)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCH--HHHHHTTGGGCSE
T ss_pred             cccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC------CCceEEeccccch--hhHhhcCchhhcE
Confidence            4578887775  6678888888877789999999998877665543      2478999999873  2222112367898


Q ss_pred             EEEcCC
Q 024097          199 AFVDAE  204 (272)
Q Consensus       199 V~~d~~  204 (272)
                      ++.-..
T Consensus       304 ~ia~T~  309 (461)
T 4g65_A          304 FIALTN  309 (461)
T ss_dssp             EEECCS
T ss_pred             EEEccc
Confidence            887554

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=86.23  E-value=3.7  Score=34.52  Aligned_cols=86  Identities=24%  Similarity=0.185  Sum_probs=56.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCC-Cc---EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SG---CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~-~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~  191 (272)
                      ..++++|-.|++ |..+..+++.+.. +.   +|+.++.+++..+.+.+.+.......++.++.+|..+.  ...+.+.-
T Consensus        31 l~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           31 LAKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HTTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             cCCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            357789988865 5566666665421 23   99999999988887777776654345688999988652  33332221


Q ss_pred             --CCCceEEEEEcCC
Q 024097          192 --EASSYDFAFVDAE  204 (272)
Q Consensus       192 --~~~~fDlV~~d~~  204 (272)
                        ..+..|+++..+.
T Consensus       110 ~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          110 PQEFKDIDILVNNAG  124 (287)
T ss_dssp             CGGGCSCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence              1257899997654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=86.11  E-value=1.4  Score=37.10  Aligned_cols=87  Identities=13%  Similarity=0.089  Sum_probs=54.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-S---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++|.=||||  ..+..++..+.. +   .+|+.+|.+++..+..++.   .+    +.. ..+..+.   +      ...
T Consensus         4 ~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~---~------~~a   64 (280)
T 3tri_A            4 SNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQG---A------LNA   64 (280)
T ss_dssp             SCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHH---H------SSC
T ss_pred             CEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHH---H------hcC
Confidence            567788885  444444443311 2   2799999999876655442   23    332 2233222   2      457


Q ss_pred             EEEEEcCCccchHHHHHHHHcc-CCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~l-LkpgG~lv  226 (272)
                      |+||+..........++.+.+. ++++.+++
T Consensus        65 DvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           65 DVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             CeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            9999887777777888888877 77665544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=85.99  E-value=3.4  Score=35.55  Aligned_cols=94  Identities=12%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCC-------CCCEE--EEEcChhHHHHHHHhC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGV-------SHKVK--IKHGLAADSLKALILN  190 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-------~~~v~--~~~~d~~~~~~~~~~~  190 (272)
                      ++|.=||+|  ..+..++..+. .+.+|+.+|.+++.++..++..   +.       .....  ....+..+.   +   
T Consensus         5 mki~iiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~---   73 (359)
T 1bg6_A            5 KTYAVLGLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDLLTSDIGLA---V---   73 (359)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSEEESCHHHH---H---
T ss_pred             CeEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccceecCCHHHH---H---
Confidence            588889885  44444444331 2458999999988776554431   11       00000  111222221   2   


Q ss_pred             CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                         ..+|+||+..........++.+.+.+++|.+++..
T Consensus        74 ---~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 ---KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             ---TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             ---hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence               46899999887666778888888899998766554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=85.68  E-value=1.4  Score=32.27  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=52.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .++|+=+|+  |..+..+++.+. .+.+|+.+|.+++..+.+++    .    ...++.+|..+. ..+.. .....+|+
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~----~~~~~~~d~~~~-~~l~~-~~~~~~d~   73 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----Y----ATHAVIANATEE-NELLS-LGIRNFEY   73 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----T----CSEEEECCTTCH-HHHHT-TTGGGCSE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----h----CCEEEEeCCCCH-HHHHh-cCCCCCCE
Confidence            457888886  677777766542 24579999998765432211    1    235667776542 12211 01246899


Q ss_pred             EEEcCCcc-chHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKR-MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~-~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..... .....+....+.+.++ .++.
T Consensus        74 vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~  102 (144)
T 2hmt_A           74 VIVAIGANIQASTLTTLLLKELDIP-NIWV  102 (144)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCS-EEEE
T ss_pred             EEECCCCchHHHHHHHHHHHHcCCC-eEEE
Confidence            99876543 2222333334445665 4443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=85.67  E-value=6.8  Score=32.11  Aligned_cols=85  Identities=13%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .++++|-.|+ +|..+..+++.+ ..+.+|+.++.+++..+.+.+.+.......++.++.+|..+.  +..+.+.  ...
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            4568887775 566777776654 236799999999876655544443221123588899987652  1211110  001


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +..|+++..+.
T Consensus        85 g~id~lv~~Ag   95 (267)
T 2gdz_A           85 GRLDILVNNAG   95 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899997764

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=85.63  E-value=13  Score=30.45  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCCh---hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA---RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--  190 (272)
                      .++++|-.|++ |..+..+++.+. .+.+|+.++.+.   +..+...+.++..  ..++.++.+|..+.  ...+.+.  
T Consensus        10 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            46788877765 557777777653 467899987654   3444444444433  34688999987652  1211110  


Q ss_pred             CCCCceEEEEEcCCc-----------cch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          191 GEASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       191 ~~~~~fDlV~~d~~~-----------~~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+..|+++..+..           ..+           ....+.+.+.++++|.+++-
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i  146 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI  146 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence            002579999976541           011           11344455777778877764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.58  E-value=8.3  Score=31.57  Aligned_cols=83  Identities=14%  Similarity=0.055  Sum_probs=51.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEE-eCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--  191 (272)
                      ..++++|-.|++. ..+..+++.+ ..+.+|+.+ +.+++..+.+.+.++..+  .++.++.+|..+.  ...+.+.-  
T Consensus         6 l~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3567888888654 4666666654 236788888 777777666666665443  4688899987652  12111100  


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                      ..+..|+++..+
T Consensus        83 ~~g~id~lv~nA   94 (259)
T 3edm_A           83 KFGEIHGLVHVA   94 (259)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            025799999765

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.46  E-value=9.6  Score=31.91  Aligned_cols=107  Identities=17%  Similarity=0.162  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCCh--hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDA--RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      .++++|-.|+ +|..+..+++.+ ..+.+|+.++.+.  ...+...+.++..+  .++.++.+|..+.  ...+.+.  .
T Consensus        48 ~~k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5678888885 455677776655 2367899998873  34455555555444  4688898887652  1111110  0


Q ss_pred             CCCceEEEEEcCCcc------------ch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKR------------MY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~------------~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+..|+++..+...            .+           ....+.+.+.++++|.||.-
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            025789998765410            01           12345556778888877764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=85.44  E-value=3.2  Score=34.04  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC-CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG-EAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~-~~~  194 (272)
                      .++++|-.|++. ..+..+++.+ ..+.+|+.++.+++..+.+.+.++..+  .++.++.+|..+.  +..+.+.- +.+
T Consensus         6 ~~k~vlVTGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAGD-YIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCSS-HHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            567888888654 4666666654 236799999999988887777776654  4689999998653  22221100 015


Q ss_pred             ceEEEEEcCC
Q 024097          195 SYDFAFVDAE  204 (272)
Q Consensus       195 ~fDlV~~d~~  204 (272)
                      ..|+++..+.
T Consensus        83 ~id~lv~nAg   92 (252)
T 3h7a_A           83 PLEVTIFNVG   92 (252)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEECCC
Confidence            7999987654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=85.43  E-value=5.5  Score=34.80  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHH------hCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .++|.=||+  |.++..++..+.. +.+|+.+|.+++.++..++.-..      ..+..++++. .|..+.   +     
T Consensus        29 ~mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHH---H-----
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHH---H-----
Confidence            357888888  5555555555432 35799999998877665542110      0111223332 233222   1     


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                       ...|+||+.-+.......++.+.+.++++.+++
T Consensus        98 -~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivv  130 (356)
T 3k96_A           98 -EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIA  130 (356)
T ss_dssp             -TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred             -hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEE
Confidence             467999998777677788888989999887655

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.20  E-value=5  Score=31.69  Aligned_cols=95  Identities=19%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      +|+=+| +.|..+..+++.+. .+.+|+.+|.+++..+...+.+...-....+.  ..+..+.+         ...|+|+
T Consensus         2 ~i~iiG-a~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~D~Vi   69 (212)
T 1jay_A            2 RVALLG-GTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT--GMKNEDAA---------EACDIAV   69 (212)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE--EEEHHHHH---------HHCSEEE
T ss_pred             eEEEEc-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC--hhhHHHHH---------hcCCEEE
Confidence            566677 14666666665542 24589999999887665544322100001233  22332322         2479999


Q ss_pred             EcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          201 VDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +..........++.+.+.+ + |.++++..
T Consensus        70 ~~~~~~~~~~~~~~l~~~~-~-~~~vi~~~   97 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNIL-R-EKIVVSPL   97 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHH-T-TSEEEECC
T ss_pred             EeCChhhHHHHHHHHHHHc-C-CCEEEEcC
Confidence            8776555556666665556 4 55666543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=85.03  E-value=14  Score=30.46  Aligned_cols=108  Identities=17%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      ..++++|-.|++ |..+..+++.+ ..+.+|+.++... +..+...+.++..+  .++.++.+|..+.  +..+.+.  .
T Consensus        29 l~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           29 LAGKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            356788888865 45666666654 2367898886654 55555555555544  4688999988652  1111110  0


Q ss_pred             CCCceEEEEEcCCc-----------cch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~-----------~~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+..|+++..+..           +.+           ....+.+.+.++++|.||.-
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i  164 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI  164 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            02478999876531           011           12345556777788877764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=84.77  E-value=11  Score=31.06  Aligned_cols=109  Identities=13%  Similarity=0.067  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCC-hhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .++++|-.|++ |..+..+++.+ ..+.+|+.++.. .+..+...+.++..+  .++.++.+|..+.  ...+.+.-  .
T Consensus        17 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56788877755 55666666654 236788887764 455555555565544  4689999997652  11111100  0


Q ss_pred             CCceEEEEEcCCc-----------cch-----------HHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEK-----------RMY-----------QEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~-----------~~~-----------~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+..|+++..+..           +.+           ....+.+.+.++++|.||+-..
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            2578998865431           011           1234555677888888776543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=84.66  E-value=4.6  Score=36.54  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=58.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHH------------HHhCCCCCEEEEEcChhHHHHHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~------------~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ++|.=||+  |+.+..++..+. .+.+|+++|++++.++..++..            ++.-...++++. .|..+.   +
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea---~   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA---V   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH---G
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH---H
Confidence            46777877  666666665543 2468999999998877655411            000001234332 233221   1


Q ss_pred             HhCCCCCceEEEEEcCCcc----------chHHHHHHHHccCCCCcEEEEeCC
Q 024097          188 ILNGEASSYDFAFVDAEKR----------MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~----------~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                            ...|+||+..+..          .....++.+.+.|++|.+++....
T Consensus        77 ------~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           77 ------PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             ------GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             ------hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence                  4579999876533          466677888888988777665443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=84.54  E-value=5.9  Score=32.31  Aligned_cols=85  Identities=16%  Similarity=0.051  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHH--HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...... .++.++.+|..+.  ...+.+.  ..
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            46788877765 446666665542 3579999999998888777766655322 4688898887652  1111110  00


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++..+.
T Consensus        85 ~g~iD~lvnnAg   96 (250)
T 3nyw_A           85 YGAVDILVNAAA   96 (250)
T ss_dssp             HCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257999997654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.41  E-value=4.2  Score=34.63  Aligned_cols=84  Identities=13%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCc-cCHHH-HHHHHHCCCCcEEEEEeCCh------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVY-TGYSS-LAIALVLPESGCLVACERDA------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~-~~la~~~~~~~~v~~iD~s~------------------~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      +..+|+=|||| .|... ..|+.. + -++++.+|.+.                  ...+.+++.+...+..-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            55799999997 34433 334433 3 47999999776                  566777888877665545666655


Q ss_pred             Chh--HHHHHHHh----CC--CCCceEEEEEcCC
Q 024097          179 LAA--DSLKALIL----NG--EASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~--~~~~~~~~----~~--~~~~fDlV~~d~~  204 (272)
                      +..  +.+..+..    ..  ....||+|+...+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D  146 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD  146 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence            443  22222210    00  0147999985443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=84.40  E-value=2.9  Score=34.54  Aligned_cols=88  Identities=11%  Similarity=0.057  Sum_probs=53.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++|.=||+|  ..+..++..+. .+.+ |+.+|.+++..+...+.+   +    +.. ..+..+.         -...|+
T Consensus        11 m~i~iiG~G--~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g----~~~-~~~~~~~---------~~~~Dv   71 (266)
T 3d1l_A           11 TPIVLIGAG--NLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---E----AEY-TTDLAEV---------NPYAKL   71 (266)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---T----CEE-ESCGGGS---------CSCCSE
T ss_pred             CeEEEEcCC--HHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---C----Cce-eCCHHHH---------hcCCCE
Confidence            578889885  44444444331 1234 899999988766554432   3    222 2233221         246799


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+.....+.++.+.+.+++|.+++-
T Consensus        72 vi~av~~~~~~~v~~~l~~~~~~~~ivv~  100 (266)
T 3d1l_A           72 YIVSLKDSAFAELLQGIVEGKREEALMVH  100 (266)
T ss_dssp             EEECCCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             EEEecCHHHHHHHHHHHHhhcCCCcEEEE
Confidence            99887766667777888788877765543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=84.13  E-value=11  Score=30.77  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCc-cCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G-~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .++++|-.|++ +|..+..+++.+. .+.+|+.++.+++..+..++..+..+   .+.++.+|..+.  +..+.+.-  .
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            45789988876 2566666666542 35799999998863333333222222   367888887652  12111100  0


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++..+.
T Consensus        84 ~g~iD~lv~~Ag   95 (261)
T 2wyu_A           84 FGGLDYLVHAIA   95 (261)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899997654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=84.11  E-value=3.4  Score=35.29  Aligned_cols=80  Identities=9%  Similarity=0.074  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEEEcChhHH--HHHHHhCCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADS--LKALILNGE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--~~~~~~~~~  192 (272)
                      ..++||=.| |+|..+..+++.+ ..+.+|++++.++.........+......   .+++++.+|..+.  +...     
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-----   97 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV-----   97 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH-----
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-----
Confidence            467899777 6788888887765 33579999998654322222222221110   3699999998763  2333     


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      -..+|.||..+.
T Consensus        98 ~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 MKGVDHVLHQAA  109 (351)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCCCEEEECCc
Confidence            247899997664

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=84.04  E-value=3.1  Score=35.93  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C-------cEEEEEeCChh-----HHHHHHHHHHHh----C--CCCCEEEEEcChh
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-S-------GCLVACERDAR-----SLEVAKKYYERA----G--VSHKVKIKHGLAA  181 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~-------~~v~~iD~s~~-----~~~~a~~~~~~~----~--~~~~v~~~~~d~~  181 (272)
                      ++|.=||+|  ..+..++..+.. +       .+|+.+|.+++     ..+..++.-...    +  +..++.+. .+..
T Consensus         9 mkI~iIG~G--~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSG--NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDVV   85 (354)
T ss_dssp             EEEEEECCS--HHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSHH
T ss_pred             CeEEEECCC--HHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCHH
Confidence            478889885  344444433311 2       47999999987     555443311000    1  11223322 2222


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      +.   .      ...|+||+..........++.+.+.++++.+++
T Consensus        86 ~~---~------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv  121 (354)
T 1x0v_A           86 QA---A------EDADILIFVVPHQFIGKICDQLKGHLKANATGI  121 (354)
T ss_dssp             HH---H------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEE
T ss_pred             HH---H------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            21   1      468999998777677788888888888877554

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=84.01  E-value=6.2  Score=35.03  Aligned_cols=90  Identities=16%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCC----cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHHhCCCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPES----GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEAS  194 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  194 (272)
                      ++|+=+|+  |..+..+++.+...    .+|+.+|.+++..+...+.+...+ ..++..+..|+.+  .+..+..   ..
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~---~~   75 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALIN---EV   75 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHH---HH
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHH---hh
Confidence            47888988  56777777655322    389999999988776665554432 1257788888754  2333322   11


Q ss_pred             ceEEEEEcCCccchHHHHHHHH
Q 024097          195 SYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      ..|+|+...+........+.+.
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHH
T ss_pred             CCCEEEECCCcccChHHHHHHH
Confidence            4799988766443334444443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=83.99  E-value=7.2  Score=32.49  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++|.=||+|  ..+..++..+   +.+.+|+++|.+++..+.+++    .+...  . ...+..+.         -...
T Consensus         6 ~~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~---------~~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLG--LIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVF---------AALA   67 (290)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTT---------GGGC
T ss_pred             cceEEEEeeC--HHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHh---------hcCC
Confidence            3578888875  3444443332   114589999999887665433    34321  1 12222221         1357


Q ss_pred             EEEEEcCCccchHHHHHHHHcc-CCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~l-LkpgG~lv  226 (272)
                      |+||+..+.......++.+.+. +++|.+++
T Consensus        68 DvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           68 DVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             SEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            8998887766667778887777 88765544

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=83.84  E-value=7.7  Score=31.73  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-ccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGV-YTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~-G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .+++||-.|+ |.| .+..+++.+ ..+.+|+.++.+++..+...+.++..+ ..++.++.+|..+.  +..+.+.-  .
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5678888886 455 444444433 236799999999988877777665443 24699999998652  11111100  0


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|++|..+.
T Consensus        99 ~g~id~li~~Ag  110 (266)
T 3o38_A           99 AGRLDVLVNNAG  110 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCcEEEECCC
Confidence            257899997654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=83.74  E-value=3.2  Score=35.79  Aligned_cols=76  Identities=14%  Similarity=0.130  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCC--Cc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPE--SG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~--~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~  193 (272)
                      .+++||-.| |+|..+..+++.+-.  +. +|++++.++.......+.+.    ..+++++.+|..+.  +...     -
T Consensus        20 ~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~-----~   89 (344)
T 2gn4_A           20 DNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYA-----L   89 (344)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHH-----T
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHH-----H
Confidence            467888776 578888888776532  44 89999999876554444332    24699999998763  2233     2


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      ..+|+||..+.
T Consensus        90 ~~~D~Vih~Aa  100 (344)
T 2gn4_A           90 EGVDICIHAAA  100 (344)
T ss_dssp             TTCSEEEECCC
T ss_pred             hcCCEEEECCC
Confidence            46899998765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=83.66  E-value=1.3  Score=37.76  Aligned_cols=92  Identities=16%  Similarity=0.111  Sum_probs=53.2

Q ss_pred             CEEEEEcCccCHHHH--HHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-----CCEEEEEcChhHHHHHHHhCCCC
Q 024097          121 QRCIEVGVYTGYSSL--AIALVLPESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~--~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ++|.=||+|.=+.++  .|++.   +..|+.++.++  .+    .+++.|+.     ...++....+.......      
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~---g~~V~~~~r~~--~~----~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~------   67 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS---GEDVHFLLRRD--YE----AIAGNGLKVFSINGDFTLPHVKGYRAPEEI------   67 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT---SCCEEEECSTT--HH----HHHHTCEEEEETTCCEEESCCCEESCHHHH------
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEEEEEcCc--HH----HHHhCCCEEEcCCCeEEEeeceeecCHHHc------
Confidence            368888887543333  23332   35799999976  22    23334431     11221001111111222      


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+|+||+..........++.+.+.++++..++.
T Consensus        68 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           68 GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEE
T ss_pred             CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEE
Confidence            5789999987777777889999999999887664

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=83.30  E-value=3.7  Score=34.29  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH---HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS---LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~--~~  192 (272)
                      .+++||-.|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+...+- .++.++.+|..+.   ...+.+.  ..
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            46778877754 55777776665 2467999999999887777666655442 3699999988653   1111110  00


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|++|..+.
T Consensus        89 ~g~iD~lv~nAg  100 (311)
T 3o26_A           89 FGKLDILVNNAG  100 (311)
T ss_dssp             HSSCCEEEECCC
T ss_pred             CCCCCEEEECCc
Confidence            257999998765

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=83.17  E-value=1.1  Score=37.89  Aligned_cols=34  Identities=9%  Similarity=0.066  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+|+||+..........++.+.+.++++..++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999987766777888888888888776554

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=83.12  E-value=5.1  Score=31.22  Aligned_cols=72  Identities=26%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFA  199 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDlV  199 (272)
                      +||=.| |+|..+..+++.+... +|++++.+++..+...+.+   +   . +++.+|..+.  +..+...  .+.+|.|
T Consensus         2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~---~---~-~~~~~D~~~~~~~~~~~~~--~~~id~v   70 (207)
T 2yut_A            2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREV---G---A-RALPADLADELEAKALLEE--AGPLDLL   70 (207)
T ss_dssp             EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHH---T---C-EECCCCTTSHHHHHHHHHH--HCSEEEE
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhc---c---C-cEEEeeCCCHHHHHHHHHh--cCCCCEE
Confidence            567666 5788999999988766 9999999987665544433   1   1 6777887652  2222211  1479999


Q ss_pred             EEcCC
Q 024097          200 FVDAE  204 (272)
Q Consensus       200 ~~d~~  204 (272)
                      |..+.
T Consensus        71 i~~ag   75 (207)
T 2yut_A           71 VHAVG   75 (207)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            97653

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=82.84  E-value=5.7  Score=32.10  Aligned_cols=83  Identities=14%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .++++|-.|+ +|..+..+++.+ ..+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  ...+.+.  ...
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4567887774 556676666654 236799999999988887777776654  3689999998652  2222110  013


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +..|+++..+.
T Consensus        81 ~~id~li~~Ag   91 (247)
T 3lyl_A           81 LAIDILVNNAG   91 (247)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899997654

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=82.64  E-value=0.42  Score=46.68  Aligned_cols=97  Identities=10%  Similarity=0.114  Sum_probs=58.6

Q ss_pred             hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ..++++||-.|+  |.|..++.+++..+  ++|++++.+++ .+..+     .+...-+.....+..+.+...   ....
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~k-~~~l~-----lga~~v~~~~~~~~~~~i~~~---t~g~  411 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASEDK-WQAVE-----LSREHLASSRTCDFEQQFLGA---TGGR  411 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGGG-GGGSC-----SCGGGEECSSSSTHHHHHHHH---SCSS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChHH-hhhhh-----cChhheeecCChhHHHHHHHH---cCCC
Confidence            456789999984  57888899999874  68999986542 11111     232211111112232222222   1235


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .+|+||-....    +.++...++|++||.++.-
T Consensus       412 GvDvVld~~gg----~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          412 GVDVVLNSLAG----EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             CCSEEEECCCT----TTTHHHHTSCTTCEEEEEC
T ss_pred             CeEEEEECCCc----HHHHHHHHHhcCCCEEEEe
Confidence            79988864432    2467889999999999974

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.45  E-value=10  Score=31.94  Aligned_cols=88  Identities=15%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+=||+|  ..+..+++.+ ..+.+|+++|.+++..+.+.    ..+    ++...  . +.+..+     -...
T Consensus       155 l~g~~v~IiG~G--~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~----~~g----~~~~~--~-~~l~~~-----l~~a  216 (300)
T 2rir_A          155 IHGSQVAVLGLG--RTGMTIARTFAALGANVKVGARSSAHLARIT----EMG----LVPFH--T-DELKEH-----VKDI  216 (300)
T ss_dssp             STTSEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----CEEEE--G-GGHHHH-----STTC
T ss_pred             CCCCEEEEEccc--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HCC----CeEEc--h-hhHHHH-----hhCC
Confidence            467899999985  4555544432 12469999999986544332    223    23222  1 122333     2578


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+|+...+.....   +...+.++||++++
T Consensus       217 DvVi~~~p~~~i~---~~~~~~mk~g~~li  243 (300)
T 2rir_A          217 DICINTIPSMILN---QTVLSSMTPKTLIL  243 (300)
T ss_dssp             SEEEECCSSCCBC---HHHHTTSCTTCEEE
T ss_pred             CEEEECCChhhhC---HHHHHhCCCCCEEE
Confidence            9999876643221   23567889988654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.44  E-value=7  Score=32.65  Aligned_cols=94  Identities=16%  Similarity=0.197  Sum_probs=56.6

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHh---------CCC--------CCEEEEEcChhH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA---------GVS--------HKVKIKHGLAAD  182 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~---------~~~--------~~v~~~~~d~~~  182 (272)
                      ++|.=||+|  ..+..++..+. .+.+|+.+|.+++.++.+++.+...         +..        .++++ ..+..+
T Consensus         5 ~kV~VIGaG--~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTG--VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQ   81 (283)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHH
T ss_pred             CEEEEECCC--HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHH
Confidence            578888875  44444444331 2569999999999988777654321         111        11222 122221


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEEE
Q 024097          183 SLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lv  226 (272)
                      .         -...|+|+...+..  .....++.+.+.++|+.+++
T Consensus        82 ~---------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           82 A---------VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             H---------TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             H---------hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence            1         24679999876543  45567788888888877654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=81.90  E-value=6.8  Score=32.25  Aligned_cols=66  Identities=11%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ++||=+| + |..+..+++.+- .+.+|++++.++........        .+++++.+|..+..  +      ..+|.|
T Consensus         6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~------~~~d~v   67 (286)
T 3ius_A            6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--L------DGVTHL   67 (286)
T ss_dssp             CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--C------TTCCEE
T ss_pred             CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--c------CCCCEE
Confidence            5899999 4 999999888763 35689999999875543221        25899999987621  2      568999


Q ss_pred             EEcCC
Q 024097          200 FVDAE  204 (272)
Q Consensus       200 ~~d~~  204 (272)
                      |..+.
T Consensus        68 i~~a~   72 (286)
T 3ius_A           68 LISTA   72 (286)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            97654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=81.89  E-value=6.6  Score=32.34  Aligned_cols=81  Identities=15%  Similarity=0.082  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-ccCHHHHHHHHHCC-CCcEEEEEeCChhH-HHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--
Q 024097          119 GAQRCIEVGV-YTGYSSLAIALVLP-ESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (272)
Q Consensus       119 ~~~~VLEiG~-G~G~~~~~la~~~~-~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--  191 (272)
                      .++++|-.|+ |+|..+..+++.+. .+.+|+.++.+++. .+...+     .+..++.++.+|..+.  +..+.+.-  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITD-----RLPAKAPLLELDVQNEEHLASLAGRVTE   80 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHT-----TSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHH-----hcCCCceEEEccCCCHHHHHHHHHHHHH
Confidence            4678998887 46777777777652 36799999998754 222211     1233577888887652  12211100  


Q ss_pred             CCC---ceEEEEEcCC
Q 024097          192 EAS---SYDFAFVDAE  204 (272)
Q Consensus       192 ~~~---~fDlV~~d~~  204 (272)
                      ..+   .+|+++..+.
T Consensus        81 ~~g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           81 AIGAGNKLDGVVHSIG   96 (269)
T ss_dssp             HHCTTCCEEEEEECCC
T ss_pred             HhCCCCCceEEEECCc
Confidence            013   7999997653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=81.83  E-value=19  Score=29.65  Aligned_cols=83  Identities=7%  Similarity=0.027  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhH-HHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.+++. .+.+.+.+...+  .++.++.+|..+.  +..+.+.  ..
T Consensus        28 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4567886665 5667777776652 36799999988643 344444454433  3588888887542  1111110  00


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++..+.
T Consensus       105 ~g~iD~lv~~Ag  116 (283)
T 1g0o_A          105 FGKLDIVCSNSG  116 (283)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            147899987654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=81.63  E-value=9.2  Score=31.71  Aligned_cols=83  Identities=22%  Similarity=0.229  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~  193 (272)
                      .++++|-.|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+...+  .++.++.+|..+.  +..+.+.  ...
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46788888855 55666666654 236799999999988877777665544  4689999998652  1111110  002


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +..|+++..+.
T Consensus       100 g~id~lv~nAg  110 (279)
T 3sju_A          100 GPIGILVNSAG  110 (279)
T ss_dssp             CSCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            57899987653

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=81.60  E-value=3.6  Score=35.80  Aligned_cols=90  Identities=9%  Similarity=0.032  Sum_probs=53.4

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ++|.=||+|  ..+..++..+. .+.+|+++|.+++..+.+++    .|.    . ...+..+.+...     ....|+|
T Consensus         9 ~kIgIIG~G--~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~----~G~----~-~~~~~~e~~~~a-----~~~aDlV   72 (341)
T 3ktd_A            9 RPVCILGLG--LIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD----EGF----D-VSADLEATLQRA-----AAEDALI   72 (341)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH----TTC----C-EESCHHHHHHHH-----HHTTCEE
T ss_pred             CEEEEEeec--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC----e-eeCCHHHHHHhc-----ccCCCEE
Confidence            468888875  55555544432 24689999999987766543    443    1 123443333321     0235899


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |+..+.......++.+..+ +|| .+++|
T Consensus        73 ilavP~~~~~~vl~~l~~~-~~~-~iv~D   99 (341)
T 3ktd_A           73 VLAVPMTAIDSLLDAVHTH-APN-NGFTD   99 (341)
T ss_dssp             EECSCHHHHHHHHHHHHHH-CTT-CCEEE
T ss_pred             EEeCCHHHHHHHHHHHHcc-CCC-CEEEE
Confidence            9887766666677777664 665 45554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=81.48  E-value=3.1  Score=35.62  Aligned_cols=92  Identities=7%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEE-----EcChhHHHHHHHh
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIK-----HGLAADSLKALIL  189 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~-----~~d~~~~~~~~~~  189 (272)
                      ..++|.=||+|  .++..++..+. .+..|+.+ .+++.++..++    .++.   ....+.     ..+. +   .   
T Consensus        18 ~~~kI~IiGaG--a~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~-~---~---   83 (318)
T 3hwr_A           18 QGMKVAIMGAG--AVGCYYGGMLARAGHEVILI-ARPQHVQAIEA----TGLRLETQSFDEQVKVSASSDP-S---A---   83 (318)
T ss_dssp             --CEEEEESCS--HHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH----HCEEEECSSCEEEECCEEESCG-G---G---
T ss_pred             cCCcEEEECcC--HHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh----CCeEEEcCCCcEEEeeeeeCCH-H---H---
Confidence            45689999885  34444443332 14589999 88877665544    2321   001111     1121 1   1   


Q ss_pred             CCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                         ...+|+||+..........++.+.+.++++.+++.
T Consensus        84 ---~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 ---VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             ---GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             ---cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence               15789999988777788889999999999876664

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=81.15  E-value=7.3  Score=32.79  Aligned_cols=88  Identities=9%  Similarity=0.076  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+++|+=||+|  ..+..+++.+. -+.+|+++|.+++..+.++    ..+    ++...  . +.+..+     -...
T Consensus       153 l~g~~v~IiG~G--~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~--~-~~l~~~-----l~~a  214 (293)
T 3d4o_A          153 IHGANVAVLGLG--RVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFH--I-SKAAQE-----LRDV  214 (293)
T ss_dssp             STTCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEE--G-GGHHHH-----TTTC
T ss_pred             CCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecC--h-hhHHHH-----hcCC
Confidence            467899999975  45555444331 2469999999986544332    233    22221  1 122332     2578


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+|++..+.....   +.....++||++++
T Consensus       215 DvVi~~~p~~~i~---~~~l~~mk~~~~li  241 (293)
T 3d4o_A          215 DVCINTIPALVVT---ANVLAEMPSHTFVI  241 (293)
T ss_dssp             SEEEECCSSCCBC---HHHHHHSCTTCEEE
T ss_pred             CEEEECCChHHhC---HHHHHhcCCCCEEE
Confidence            9999876543221   23455688988665

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=81.06  E-value=10  Score=31.00  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++||-.|++. |..+..+++.+ ..+.+|+.++.++...+.+++.....+   ...++.+|..+.  +..+.+.  ..
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHHH
Confidence            467888888752 56777776654 236799999998732233332222222   236778887652  2222111  11


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|++|..+.
T Consensus        85 ~g~iD~lv~~Ag   96 (265)
T 1qsg_A           85 WPKFDGFVHSIG   96 (265)
T ss_dssp             CSSEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            357999997654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=80.97  E-value=6.6  Score=32.75  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=51.5

Q ss_pred             CEEEEEcC-ccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          121 QRCIEVGV-YTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       121 ~~VLEiG~-G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++|.=||+ |  ..+..++..+. .+.+|+++|.+++..+.+++    .|..    .  .+..+.         -...|+
T Consensus        12 m~I~iIG~tG--~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~g~~----~--~~~~~~---------~~~aDv   70 (286)
T 3c24_A           12 KTVAILGAGG--KMGARITRKIHDSAHHLAAIEIAPEGRDRLQG----MGIP----L--TDGDGW---------IDEADV   70 (286)
T ss_dssp             CEEEEETTTS--HHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----TTCC----C--CCSSGG---------GGTCSE
T ss_pred             CEEEEECCCC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----cCCC----c--CCHHHH---------hcCCCE
Confidence            47888887 5  34444443331 24589999999887665543    3321    1  122221         135789


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      ||+..+.......++.+.+.+++|.+++
T Consensus        71 Vi~av~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           71 VVLALPDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             EEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             EEEcCCchHHHHHHHHHHHhCCCCCEEE
Confidence            9887766666777777777777766444

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=80.84  E-value=6.8  Score=39.17  Aligned_cols=76  Identities=13%  Similarity=-0.029  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCc--EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN------  190 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~------  190 (272)
                      ...+++|+.||.|++++.|.++   +.  .+.++|+++.+.+.-+.|+     . ...++.+|..++.......      
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNN-----P-GSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCCeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhC-----C-CCccccccHHHHhhhccchhhhhhh
Confidence            3458999999999999998875   33  5789999999887666654     1 2567788876654322110      


Q ss_pred             C----CCCceEEEEEcC
Q 024097          191 G----EASSYDFAFVDA  203 (272)
Q Consensus       191 ~----~~~~fDlV~~d~  203 (272)
                      +    ..+.+|+|+...
T Consensus       610 ~~~lp~~~~vDll~GGp  626 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGP  626 (1002)
T ss_dssp             CCBCCCTTTCSEEEECC
T ss_pred             hhhcccCCCeeEEEEcC
Confidence            0    124689988654

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=80.80  E-value=13  Score=30.56  Aligned_cols=83  Identities=20%  Similarity=0.137  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEE-eCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .++++|-.|++. ..+..+++.+. .+.+|+.+ ..+++..+...+.++..+  .++.++.+|..+.  ...+.+.-  .
T Consensus        26 ~~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467888888654 45666665542 35688777 455666666666665544  4688899987652  12111100  0


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++..+.
T Consensus       103 ~g~iD~lvnnAG  114 (267)
T 3u5t_A          103 FGGVDVLVNNAG  114 (267)
T ss_dssp             HSCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257999997653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=80.80  E-value=8.1  Score=31.82  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                   ...+.+++.+...+..-+++.+..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAG-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTT-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcC-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            456999999974 443333222333 46899998763                   445666677766554434565544


Q ss_pred             ChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~-~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      ...+ .+..+.     ..+|+|+...+
T Consensus       106 ~~~~~~~~~~~-----~~~DvVi~~~d  127 (251)
T 1zud_1          106 RLTGEALKDAV-----ARADVVLDCTD  127 (251)
T ss_dssp             CCCHHHHHHHH-----HHCSEEEECCS
T ss_pred             cCCHHHHHHHH-----hcCCEEEECCC
Confidence            3322 222221     46899986544

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=80.80  E-value=13  Score=30.91  Aligned_cols=83  Identities=12%  Similarity=0.059  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCCh-hHHHHHHHHHH-HhCCCCCEEEEEcChhH----H--HHHHHh
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYE-RAGVSHKVKIKHGLAAD----S--LKALIL  189 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~----~--~~~~~~  189 (272)
                      .++++|-.|+ +|..+..+++.+. .+.+|+.++.++ +..+.+.+.+. ..+  .++.++.+|..+    .  +..+.+
T Consensus        22 ~~k~~lVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           22 EAPAAVVTGA-AKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS--NTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             CCCEEEETTC-SSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcC--CceEEEEeecCCccCCHHHHHHHHH
Confidence            4667887775 4566777666542 357999999998 66665555554 223  468888888765    2  111111


Q ss_pred             CC--CCCceEEEEEcCC
Q 024097          190 NG--EASSYDFAFVDAE  204 (272)
Q Consensus       190 ~~--~~~~fDlV~~d~~  204 (272)
                      .-  ..+..|++|..+.
T Consensus        99 ~~~~~~g~iD~lvnnAG  115 (288)
T 2x9g_A           99 SCFRAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHhcCCCCEEEECCC
Confidence            00  0247899987653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=80.65  E-value=20  Score=28.49  Aligned_cols=73  Identities=16%  Similarity=0.092  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE-EEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..+++||=.| |+|..+..+++.+ ..+.+|++++.+++..+....    .    ++ +++.+|..+.+...     -+.
T Consensus        19 l~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~----~~~~~~~~Dl~~~~~~~-----~~~   84 (236)
T 3e8x_A           19 FQGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R----GASDIVVANLEEDFSHA-----FAS   84 (236)
T ss_dssp             --CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T----TCSEEEECCTTSCCGGG-----GTT
T ss_pred             cCCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C----CCceEEEcccHHHHHHH-----HcC
Confidence            3567899777 5677887777765 235799999999876543322    1    47 88999986222211     257


Q ss_pred             eEEEEEcCC
Q 024097          196 YDFAFVDAE  204 (272)
Q Consensus       196 fDlV~~d~~  204 (272)
                      +|.||..+.
T Consensus        85 ~D~vi~~ag   93 (236)
T 3e8x_A           85 IDAVVFAAG   93 (236)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899997654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=80.36  E-value=6.3  Score=33.69  Aligned_cols=86  Identities=15%  Similarity=0.175  Sum_probs=53.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCC-C----cEEEEEeCChh--HHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPE-S----GCLVACERDAR--SLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~-~----~~v~~iD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ++|.=||+|  ..+..++..+.. +    .+|+.+|.+++  ..+..+    ..|    +.+ ..+..+..         
T Consensus        23 mkI~iIG~G--~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~G----~~~-~~~~~e~~---------   82 (322)
T 2izz_A           23 MSVGFIGAG--QLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KMG----VKL-TPHNKETV---------   82 (322)
T ss_dssp             CCEEEESCS--HHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HHT----CEE-ESCHHHHH---------
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----HcC----CEE-eCChHHHh---------
Confidence            468888884  455555444321 2    47999999885  444433    234    232 23333322         


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      ...|+||+........+.++.+...+++|.+++
T Consensus        83 ~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivv  115 (322)
T 2izz_A           83 QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVV  115 (322)
T ss_dssp             HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            357999998777777788888888888876544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	6e-51
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	1e-50
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	1e-39
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	1e-11
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-09
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-09
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	6e-08
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	0.001
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	0.002

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 6e-51
 Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 5/210 (2%)

Query: 67  SVTPP----LYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ 121
            + PP    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L +++ A+
Sbjct: 2   CLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAK 61

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           + +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ ++   A 
Sbjct: 62  KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 121

Query: 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241
           ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW GKV     
Sbjct: 122 ETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPK 181

Query: 242 NDAKTISIRNFNKNLMEDERVSISMKEVQD 271
            D     +RN N+ +  D RV IS+  + D
Sbjct: 182 GDVAAECVRNLNERIRRDVRVYISLLPLGD 211

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  163 bits (414), Expect = 1e-50
 Identities = 79/216 (36%), Positives = 117/216 (54%), Gaps = 10/216 (4%)

Query: 66  ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122
           +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+ 
Sbjct: 3   LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 62

Query: 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182
            +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A  
Sbjct: 63  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 122

Query: 183 SLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV 241
            L  +I +     SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW+G V     
Sbjct: 123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPD 182

Query: 242 NDAKTIS------IRNFNKNLMEDERVSISMKEVQD 271
              +         +   NK L  D R+ I M  V D
Sbjct: 183 APLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGD 218

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 41/204 (20%), Positives = 84/204 (41%), Gaps = 11/204 (5%)

Query: 72  LYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 7   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 66

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 67  CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 126

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
             +  + D  F+D  K  Y     LL    L+R G +++ DNV+  G             
Sbjct: 127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAY------ 180

Query: 248 SIRNFNKNLMEDERVSISMKEVQD 271
            +R  +          +   +V D
Sbjct: 181 -VRGSSSFECTHYSSYLEYMKVVD 203

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 35/201 (17%), Positives = 62/201 (30%), Gaps = 16/201 (7%)

Query: 68  VTPPLYDYILRNVREPEILRQLREETAGM---RGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +T    D+ L   R  E  R L          RG +M   PD   +   ++  L  +  +
Sbjct: 28  LTDRPRDWPL--DRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIV 85

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+GVY G S      +    G         R L   +             I       S 
Sbjct: 86  ELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSD 140

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLL-QLIRVGGIIVI-DNVLWHGKVADQMVN 242
                +    ++   F+D          +  +  L+  G   +I D + +  + A Q+ +
Sbjct: 141 LTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFS 200

Query: 243 DAKTISIRNFNKNLMEDERVS 263
           +     +  F   L  D   +
Sbjct: 201 E----YLGAFRDVLSMDMLYA 217

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+    D + ++     +      +EVGV +G  S  I   L   G L   ERD  +
Sbjct: 64  RNTQIISEIDASYIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 216
           L+ A            V+      AD +             +  V A+      + + + 
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQMYDAVIADIPDPWNHVQKIA 173

Query: 217 QLIRVGGIIVI 227
            +++ G +   
Sbjct: 174 SMMKPGSVATF 184

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 3e-09
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 77  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 135

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASSYDFAFVDAEKRMYQE 210
            ++AKK Y+    S K+        +       +     + ++ ++D   +D        
Sbjct: 136 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HV 193

Query: 211 YFELLLQLIRVGGIIVI 227
              +    ++ GG+  +
Sbjct: 194 TLPVFYPHLKHGGVCAV 210

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 55  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 97

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             +  ++
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157

Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
             +   L       S D A +D       E  + + +L+  GG++++
Sbjct: 158 DLADSELP----DGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVLMV 198

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 17/144 (11%)

Query: 96  MRGSQMQVSPDQA-QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154
           MRG +     DQ    LA+   +    R ++V  YTG    AI   +  +  ++  ++  
Sbjct: 121 MRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIAGADEVIGIDKSP 178

Query: 155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----------- 203
           R++E AK+  +  GV  ++K   G A + ++ L   GE   +D   +D            
Sbjct: 179 RAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE--KFDIVVLDPPAFVQHEKDLK 236

Query: 204 -EKRMYQEYFELLLQLIRVGGIIV 226
              R Y       L L++ GGI+V
Sbjct: 237 AGLRAYFNVNFAGLNLVKDGGILV 260

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 12/115 (10%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           +  Q+    + ++VG  +G  +   A ++  +G ++  +     ++ +     +   +  
Sbjct: 70  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 129

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227
              +  L     +                 A   + Q   + L    + GG +++
Sbjct: 130 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV-VPQALIDQL----KPGGRLIL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.97
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.73
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.73
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.72
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.71
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.71
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.67
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.67
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.65
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.65
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.65
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.63
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.62
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.59
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.59
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.58
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.57
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.57
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.57
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.56
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.56
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.55
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.55
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.55
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.54
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.52
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.51
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.51
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.51
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.5
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.5
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.49
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.48
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.48
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.47
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.45
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.43
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.41
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.4
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.39
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.36
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.34
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.33
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.33
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.33
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.32
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.32
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.32
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.31
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.31
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.3
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.3
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.22
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.21
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.21
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.19
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.19
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.17
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.98
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.96
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.93
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.93
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.89
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.86
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.8
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.79
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.74
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.73
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.71
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.7
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.7
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.66
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.64
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.58
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.4
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.36
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.32
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.16
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.11
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.95
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.83
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.81
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.8
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.65
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.61
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.54
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.48
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.47
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.47
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.37
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.27
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.22
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.13
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.0
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.93
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.9
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.66
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.58
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.57
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.09
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.02
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.77
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.67
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.64
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.57
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.46
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.35
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.28
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.1
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.0
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.95
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.93
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.69
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.67
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.48
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.46
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.41
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.14
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.82
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.69
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.17
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.64
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.39
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.15
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.08
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.8
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	89.45
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.0
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.84
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.61
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.53
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.53
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.23
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	88.2
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	88.15
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.74
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.6
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	87.04
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	86.93
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.92
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.77
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	86.65
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	86.44
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	86.26
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.2
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	86.09
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.05
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	85.77
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.29
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	84.83
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	84.29
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.21
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	83.81
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.68
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.57
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.34
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.41
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.38
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.32
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	81.67
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.4
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	81.03
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.99
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.7
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	80.61

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=282.05  Aligned_cols=207  Identities=37%  Similarity=0.608  Sum_probs=195.4

Q ss_pred             CCCChhHHHHHHhc-cCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC
Q 024097           66 ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES  144 (272)
Q Consensus        66 ~~~~~~l~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~  144 (272)
                      .+.+++|++|+.++ ..+++.+.++++.+.......|.++|.+++++..++...++++|||||||+|++++++++.++++
T Consensus         5 p~~~~~l~~Y~~~~~~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~   84 (219)
T d2avda1           5 PPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPAD   84 (219)
T ss_dssp             CCTTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTT
T ss_pred             CCCcHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCC
Confidence            34678899999998 56789999999999877666789999999999999999999999999999999999999999888


Q ss_pred             cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcE
Q 024097          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI  224 (272)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~  224 (272)
                      ++|+++|.+++..+.|+++++.+|+.++++++.||+.+.++.+...+..++||+||+|+.+..+..+++.+.++|+|||+
T Consensus        85 g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGv  164 (219)
T d2avda1          85 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGI  164 (219)
T ss_dssp             CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEE
T ss_pred             ceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcE
Confidence            99999999999999999999999999999999999999988877666668999999999999999999999999999999


Q ss_pred             EEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          225 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       225 lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      |++||++|.|.+.+|..++..+.++++||++|.+||+++++++|+|||
T Consensus       165 ii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdG  212 (219)
T d2avda1         165 LAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG  212 (219)
T ss_dssp             EEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred             EEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCe
Confidence            999999999999999888999999999999999999999999999998

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.4e-40  Score=274.89  Aligned_cols=207  Identities=38%  Similarity=0.624  Sum_probs=188.7

Q ss_pred             CCCChhHHHHHHhc---cCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097           66 ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (272)
Q Consensus        66 ~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~  142 (272)
                      ...+++|++|+.++   .++++.+.++++.+...+.+.|.+++.++++|..++...++++||||||++|++++++++.++
T Consensus         3 ~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~   82 (227)
T d1susa1           3 LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIP   82 (227)
T ss_dssp             SBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSC
T ss_pred             ccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCC
Confidence            34588999999764   367899999999998887788999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEEEEEcCCccchHHHHHHHHccCCC
Q 024097          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRV  221 (272)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDlV~~d~~~~~~~~~l~~~~~lLkp  221 (272)
                      ++++++++|.+++..+.|+++++++|+.++++++.|++.+.++.+...+ ..++||+||+|+++..+..+++.+.++|+|
T Consensus        83 ~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~  162 (227)
T d1susa1          83 EDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKV  162 (227)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCT
T ss_pred             CCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCC
Confidence            8899999999999999999999999999999999999999999886543 356899999999999999999999999999


Q ss_pred             CcEEEEeCCCCCCcccCCcCCCHh------hHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097          222 GGIIVIDNVLWHGKVADQMVNDAK------TISIRNFNKNLMEDERVSISMKEVQDA  272 (272)
Q Consensus       222 gG~lvi~d~~~~g~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~lp~~~G  272 (272)
                      ||+|++||++|.|.|.+|...+..      ..++++||+++.+||+++++++|+|||
T Consensus       163 gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDG  219 (227)
T d1susa1         163 GGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG  219 (227)
T ss_dssp             TCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTC
T ss_pred             CcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCe
Confidence            999999999999999887643322      337999999999999999999999999

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=7e-30  Score=211.47  Aligned_cols=189  Identities=21%  Similarity=0.358  Sum_probs=159.4

Q ss_pred             ChhHHHHHHhccCC--h-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc
Q 024097           69 TPPLYDYILRNVRE--P-EILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (272)
Q Consensus        69 ~~~l~~y~~~~~~~--~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~  145 (272)
                      ++++.+|+.++..+  + .+++.+.+.+.. ....|.++|.++++|..++...++++|||||||+|++++++++++++++
T Consensus         4 ~~~~~~yv~~~~~~~~p~~vl~~~~~~~~~-~~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g   82 (214)
T d2cl5a1           4 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQ-KEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   82 (214)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-TCCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-cCCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCcc
Confidence            35789999988543  3 466666554443 3566889999999999999999999999999999999999999998789


Q ss_pred             EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHH--HHHHHccCCCCc
Q 024097          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY--FELLLQLIRVGG  223 (272)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~--l~~~~~lLkpgG  223 (272)
                      +|+++|+++++.+.|+++++.+|+.++|+++.||+.+.++.+......++||+||+|+.+..+...  +.++.++|+|||
T Consensus        83 ~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGG  162 (214)
T d2cl5a1          83 RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGT  162 (214)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCc
Confidence            999999999999999999999999999999999999988777654445789999999998877654  566678999999


Q ss_pred             EEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEE-------eecCCC
Q 024097          224 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-------KEVQDA  272 (272)
Q Consensus       224 ~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------lp~~~G  272 (272)
                      +|++||++|+|.              .+|.+++.+++++.+..       +|++||
T Consensus       163 vIv~Ddvl~~g~--------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dg  204 (214)
T d2cl5a1         163 VLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDG  204 (214)
T ss_dssp             EEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEE
T ss_pred             EEEEeCcCCCCC--------------hHHHHHHhccCceeehhhhhcceecccCCc
Confidence            999999999984              34778888888888765       666665

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.80  E-value=2.9e-19  Score=143.98  Aligned_cols=120  Identities=20%  Similarity=0.297  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ....+...++...+...++.+|||||||+|..++.+++.   .++|+++|+++++++.|++|++++++.++++++++|+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~   92 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence            456677677777788889999999999999999999875   45999999999999999999999999889999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +....      ...||+||++........+++.+.+.|||||.+++...
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hcccc------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            76543      47999999999888888999999999999999998644

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.3e-19  Score=150.57  Aligned_cols=126  Identities=21%  Similarity=0.201  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      +..+.....+...+...++++|||||||+|..+..+++..+  ++|+|+|+|+.+++.|+++.+..|+.++++++++|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            45777888888888889999999999999999999998754  7999999999999999999999999999999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          182 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      +..+       +++||+|++...   ..+...+++++.++|||||.+++.+..|....
T Consensus        94 ~~~~-------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~  144 (245)
T d1nkva_          94 GYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP  144 (245)
T ss_dssp             TCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred             hccc-------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC
Confidence            7422       579999997654   34578899999999999999999987766543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=6.7e-18  Score=142.52  Aligned_cols=119  Identities=20%  Similarity=0.255  Sum_probs=104.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CCCCCEEEEEcC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGL  179 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d  179 (272)
                      .+.|....++..++...++++|||+|||+|+.+.+||+.+.+.++|+++|+++++++.|+++++..  +..++++++++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            688999999999999999999999999999999999999887999999999999999999999875  345689999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+..      .++++||.||+|.+.++  .+++.+.+.|||||.+++.
T Consensus       159 ~~~~~------~~~~~fDaV~ldlp~P~--~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         159 LADSE------LPDGSVDRAVLDMLAPW--EVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             GGGCC------CCTTCEEEEEEESSCGG--GGHHHHHHHEEEEEEEEEE
T ss_pred             ccccc------ccCCCcceEEEecCCHH--HHHHHHHhccCCCCEEEEE
Confidence            87631      12589999999875443  5789999999999999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=2.2e-18  Score=144.57  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.|....++...+...++.+|||+|||+|..+.++++.+++.++|+++|+++++++.|++++++.+..+++++.++|..
T Consensus        68 iiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~  147 (250)
T d1yb2a1          68 IISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA  147 (250)
T ss_dssp             -------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT
T ss_pred             ccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence            45677778888888899999999999999999999999987789999999999999999999998777778999999997


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.++       ++.||.||+|.+.+  ..+++.+.+.|||||++++.
T Consensus       148 ~~~~-------~~~fD~V~ld~p~p--~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         148 DFIS-------DQMYDAVIADIPDP--WNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             TCCC-------SCCEEEEEECCSCG--GGSHHHHHHTEEEEEEEEEE
T ss_pred             cccc-------cceeeeeeecCCch--HHHHHHHHHhcCCCceEEEE
Confidence            7532       57899999986543  35799999999999999974

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.2e-17  Score=141.52  Aligned_cols=118  Identities=21%  Similarity=0.333  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.|....++..++...++++|||+|||+|+.+.++|+.++++++|+++|+++++++.|+++++..++.+++.+..+|..
T Consensus        86 iiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~  165 (266)
T d1o54a_          86 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  165 (266)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence            67899999999999999999999999999999999999997789999999999999999999999999888999999875


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +..       +...||.||+|.+.  ...+++++.++|||||.+++.
T Consensus       166 ~~~-------~~~~~D~V~~d~p~--p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         166 EGF-------DEKDVDALFLDVPD--PWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             GCC-------SCCSEEEEEECCSC--GGGTHHHHHHHEEEEEEEEEE
T ss_pred             ccc-------cccceeeeEecCCC--HHHHHHHHHhhcCCCCEEEEE
Confidence            532       24789999998653  345799999999999999974

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=7.9e-18  Score=140.00  Aligned_cols=116  Identities=15%  Similarity=0.243  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (272)
Q Consensus       106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  185 (272)
                      ....++...+...++.+|||||||+|..+..+++..   ++|+|+|+|+.+++.|++++...+.. ++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c
Confidence            345677788888899999999999999999999863   58999999999999999999988875 599999999763 2


Q ss_pred             HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .     ++++||+|++...   ..+...+++++.++|||||++++.+..
T Consensus        78 ~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          78 F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c-----cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence            1     2589999998765   345788999999999999999886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.72  E-value=9.5e-18  Score=138.79  Aligned_cols=109  Identities=16%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ++...++++|||||||+|..+..+++.   +.+|+|+|+|+++++.|+++++..+.. +++++++|+.+. + +    .+
T Consensus        10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-~----~~   79 (231)
T d1vl5a_          10 IAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F----TD   79 (231)
T ss_dssp             HHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S----CT
T ss_pred             hcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-c----cc
Confidence            366678899999999999999999876   359999999999999999999988875 699999999764 2 1    15


Q ss_pred             CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ++||+|++...   ..+...++.++.++|||||++++.+..+
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            79999998765   3467789999999999999999866544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.4e-17  Score=141.47  Aligned_cols=121  Identities=16%  Similarity=0.247  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh----------CCCC
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA----------GVSH  171 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~----------~~~~  171 (272)
                      .+.|....++..++...++.+|||+|||+|+.+.+||+.+.++++|+++|+++++++.|+++++..          +..+
T Consensus        81 iiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~  160 (324)
T d2b25a1          81 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  160 (324)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            578999999999999999999999999999999999999887899999999999999999999864          3456


Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++.++|+.+....+    ....||.||+|.+.++  .++.++.+.|||||.|++-
T Consensus       161 nv~~~~~di~~~~~~~----~~~~fD~V~LD~p~P~--~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         161 NVDFIHKDISGATEDI----KSLTFDAVALDMLNPH--VTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             CEEEEESCTTCCC-----------EEEEEECSSSTT--TTHHHHGGGEEEEEEEEEE
T ss_pred             ceeEEecchhhccccc----CCCCcceEeecCcCHH--HHHHHHHHhccCCCEEEEE
Confidence            8999999987643322    1468999999875433  4789999999999999973

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=2.2e-17  Score=135.64  Aligned_cols=116  Identities=26%  Similarity=0.376  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ..|.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.|+++++..+.. ++.++++|+.+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~  137 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYY  137 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHH
Confidence            45776666677778889999999999999999999998877899999999999999999999988876 58899999876


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+.      .++||.|++.+.....+   +.+.+.|||||.|++.
T Consensus       138 ~~~~------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         138 GVPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cccc------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            5432      47899999988766543   3567789999999984

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.70  E-value=1.6e-17  Score=142.06  Aligned_cols=111  Identities=14%  Similarity=0.233  Sum_probs=94.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++..  +.+|+|+|+++.+++.|+++....|+.++++++++|+.+. +.     ++++
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~-----~~~s  135 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PC-----EDNS  135 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SS-----CTTC
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-cc-----cccc
Confidence            34577899999999999999999875  4699999999999999999999999999999999999774 21     2589


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|++...   ..+...+++++.++|||||.+++.+.....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED  177 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCC
Confidence            999998654   345778999999999999999998766543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.5e-16  Score=135.76  Aligned_cols=107  Identities=7%  Similarity=0.073  Sum_probs=92.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+.++++..+  .+|+|+|+|+++++.|++++++.++..++.+...|..+.         +++
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---------~~~  117 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEP  117 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCC
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---------ccc
Confidence            456789999999999999999998764  699999999999999999999999988899998887653         579


Q ss_pred             eEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       196 fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ||.|++...     ..++..+|+++.++|||||.++++.+...
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~  160 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  160 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeecc
Confidence            999987644     34568899999999999999999876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.5e-16  Score=133.71  Aligned_cols=115  Identities=16%  Similarity=0.241  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          105 PDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       105 ~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      +.+.-.+..+.. ..++++|||+|||+|..++.+++.   +.+|+|+|+|+.+++.|++|.+.+++.  ++++++|..+.
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~  179 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc
Confidence            444445555544 346789999999999999988763   468999999999999999999999885  57889988664


Q ss_pred             HHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+       .++||+|+++........+++.+.++|||||++++.+++
T Consensus       180 ~~-------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         180 LP-------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             GG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc-------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            33       479999999877777778889999999999999997654

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.6e-17  Score=132.98  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC----CCEEE
Q 024097          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKI  175 (272)
Q Consensus       102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~v~~  175 (272)
                      ...|.....+..++  ...++.+|||||||+|+.+..+++.+.+.++|+++|+++++++.|++++++.++.    .++.+
T Consensus        57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~  136 (224)
T d1i1na_          57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  136 (224)
T ss_dssp             ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence            44566655555555  4578899999999999999999998877899999999999999999999887653    47899


Q ss_pred             EEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +.+|+.+..+.      .++||.|++.+.....   .+.+.+.|||||+||+-
T Consensus       137 ~~gD~~~~~~~------~~~fD~I~~~~~~~~i---p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         137 VVGDGRMGYAE------EAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EESCGGGCCGG------GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             EEeecccccch------hhhhhhhhhhcchhhc---CHHHHhhcCCCcEEEEE
Confidence            99998765443      4789999998876554   34567889999999983

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=2.1e-16  Score=135.39  Aligned_cols=111  Identities=7%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..+...++.+|||||||.|..+.++++..+  ++|+|+++|++.++.+++.++..++.+++++...|....         
T Consensus        55 ~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---------  123 (291)
T d1kpia_          55 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------  123 (291)
T ss_dssp             HTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------
T ss_pred             HhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---------
Confidence            334566889999999999999999998864  799999999999999999999999999999999987531         


Q ss_pred             CCceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          193 ASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       193 ~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      +++||.|++....            ..+..+++.+.++|||||.++++.+..+.
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~  177 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD  177 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCC
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccC
Confidence            5899999975432            34789999999999999999999876543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.67  E-value=1.2e-16  Score=129.18  Aligned_cols=110  Identities=15%  Similarity=0.247  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKA  186 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~  186 (272)
                      .+++...+...++++|||+|||+|..++.+++..   .+|+++|+|+.+++.++++++.+++.+ ++++..+|..+.++ 
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-
Confidence            4555555666788999999999999999999864   489999999999999999999988864 69999999876432 


Q ss_pred             HHhCCCCCceEEEEEcCCcc----chHHHHHHHHccCCCCcEEEE
Q 024097          187 LILNGEASSYDFAFVDAEKR----MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~----~~~~~l~~~~~lLkpgG~lvi  227 (272)
                            +++||+|+++.+..    ....+++.+.++|+|||.+++
T Consensus       117 ------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 ------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             ------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                  47999999987632    245678999999999999876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=1.7e-16  Score=132.72  Aligned_cols=100  Identities=16%  Similarity=0.245  Sum_probs=83.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||||||+|..+..+++.   +.+|+|+|+|+.|++.|++++...+.  +++++++|+.+...       +++||
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD  107 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFD  107 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEE
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccc
Confidence            35678999999999999999985   46999999999999999999988776  59999999977421       46899


Q ss_pred             EEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|++...      ..+...+++++.++|||||+++++-
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9998542      2345678999999999999999864

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=2.1e-16  Score=126.92  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC-----------C
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-----------S  170 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-----------~  170 (272)
                      .+++...+++..+ ...++.+|||+|||+|..+.+||+.   +.+|+|+|+|+.+++.|+++.+..+.           .
T Consensus         4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~   79 (201)
T d1pjza_           4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA   79 (201)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC
T ss_pred             hHHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccc
Confidence            5667777776665 4667889999999999999999986   68999999999999999998754322           1


Q ss_pred             CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       171 ~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ..+++..+|..+..+..     ...||+|+....     ......+++.+.+.|||||.+++....+..
T Consensus        80 ~~~~~~~~d~~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          80 PGIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             SSSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             cccceeccccccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence            24578888887754433     368999987654     234567899999999999998776555444

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=3.9e-16  Score=128.90  Aligned_cols=119  Identities=8%  Similarity=0.119  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          106 DQAQLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       106 ~~~~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      ...+.+..++.  ..++.+|||||||+|..+..+++... ++.+|+|+|+|++|++.|+++++..+...++++..+|..+
T Consensus        24 ~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          24 NIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence            33344444443  24667999999999999999998753 4789999999999999999999888877789999888865


Q ss_pred             HHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          183 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..        .+.+|+|++...     ..+...+++++++.|||||.+++.+...
T Consensus       104 ~~--------~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         104 VE--------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             CC--------CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cc--------cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            31        468899887643     3456789999999999999999976554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=4.2e-16  Score=133.13  Aligned_cols=110  Identities=9%  Similarity=0.090  Sum_probs=95.0

Q ss_pred             HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (272)
Q Consensus       111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  190 (272)
                      +...+...++.+|||||||.|..++++++..  +++|+|+++|++.++.|+++++..++.+++++..+|..+.       
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-------  124 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-------  124 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-------
T ss_pred             HHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-------
Confidence            3334556788999999999999999999986  4899999999999999999999999999999999998653       


Q ss_pred             CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       191 ~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                        +++||.|++-..     ...+..+++++.++|||||.++++.+.
T Consensus       125 --~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         125 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence              478999987544     345688999999999999999998875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.65  E-value=5.7e-16  Score=120.41  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=92.1

Q ss_pred             HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (272)
Q Consensus       110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  189 (272)
                      ++..+.....+++|||+|||+|..++.++.+-  ..+|+++|.++++++.++++++..+..++++++++|+.+.++..  
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--   80 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--   80 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--
Confidence            33444445678999999999999999887752  24999999999999999999999999889999999998877654  


Q ss_pred             CCCCCceEEEEEcCC--ccchHHHHHHHH--ccCCCCcEEEEe
Q 024097          190 NGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVID  228 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~--~~~~~~~l~~~~--~lLkpgG~lvi~  228 (272)
                         .++||+||+|++  .......++.+.  ++|+|||+++++
T Consensus        81 ---~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 ---TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ---CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ---ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence               578999999987  334556676664  679999999986

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.65  E-value=2.5e-16  Score=131.62  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          105 PDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       105 ~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      .....++..++..  .++++|||||||+|..+..+++.   +.+|+|+|+|+.|++.|+++....+.  +++++++|+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~   95 (246)
T d1y8ca_          21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISN   95 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhh
Confidence            3445555555543  34679999999999999999986   45899999999999999999887776  58999999976


Q ss_pred             HHHHHHhCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 024097          183 SLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..  +     .++||+|++-..       ..+...+++.+.++|+|||.++++
T Consensus        96 ~~--~-----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          96 LN--I-----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CC--C-----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hc--c-----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            42  1     478999997432       234567899999999999999975

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=1.1e-16  Score=136.73  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=92.5

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+..+++.++.+++|+|+|+|+.+++.|++++...+.  +++++++|+.+..  +     .++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~--~-----~~~   94 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--L-----NDK   94 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--C-----SSC
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc--c-----cCC
Confidence            345788999999999999999999888778999999999999999999977665  5999999987631  1     368


Q ss_pred             eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ||+|++...   ..+...+++++.+.|||||.+++.+..|..
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~  136 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWIS  136 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHH
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccc
Confidence            999998765   345678999999999999999987766543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-16  Score=131.61  Aligned_cols=111  Identities=18%  Similarity=0.204  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||||||+|.++..+++..  ..+|++||+|+.+++.|+++.+..+  .++.++.+++.+....+    ..++||
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~fD  123 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFD  123 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc----cccccc
Confidence            356799999999999999999864  3689999999999999999886544  45888888887654433    257999


Q ss_pred             EEEEcCC--------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          198 FAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       198 lV~~d~~--------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      .|+.|..        ..+...+++++.++|||||+|++.+..+.+..
T Consensus       124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~  170 (229)
T d1zx0a1         124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGEL  170 (229)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHH
T ss_pred             ceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchh
Confidence            9998864        22356688999999999999999877655543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.63  E-value=6.8e-16  Score=126.59  Aligned_cols=103  Identities=12%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+++++.|+++....+.  ++.++.+|+.+.. .     .+++||
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~-~-----~~~~fD  104 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLS-F-----EDKTFD  104 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCC-S-----CTTCEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--ccccccccccccc-c-----cCcCce
Confidence            35679999999999999999974   56999999999999999999887764  4788889887632 1     258999


Q ss_pred             EEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       198 lV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|++.....     +...+++++.++|||||.+++....
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999876532     4567899999999999999987543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.62  E-value=1.8e-15  Score=127.16  Aligned_cols=110  Identities=19%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ......+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|+.+..        
T Consensus        74 ~~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------  143 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------  143 (253)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------
T ss_pred             hhcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------
Confidence            334456678999999999999999999987 789999998 7899999999999999999999999986532        


Q ss_pred             CCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          193 ASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..+||+|++.....     ....+++++.+.|||||.|++.+...
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            36799999876533     23567999999999999999876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=1.4e-15  Score=123.02  Aligned_cols=105  Identities=14%  Similarity=0.209  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||||||+|..+.++++.   +.+|+++|+|+.+++.++++.+..++. ++++..+|+.+...       +++
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~   95 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGE   95 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCC
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------ccc
Confidence            3446679999999999999999985   469999999999999999999988886 59999999876432       578


Q ss_pred             eEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ||+|++...     ......+++++.++|+|||++++....
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          96 YDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999998654     234567999999999999999986443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=3.7e-15  Score=121.17  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=87.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ...|||||||+|..+..+|+..| +..++|+|+++.++..|.++.++.++. ++.++.+|+......+    .++++|.|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~----~~~~~d~v  103 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF----EPGEVKRV  103 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC----CTTSCCEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc----Cchhhhcc
Confidence            44899999999999999999987 789999999999999999999999986 6999999998765443    25789999


Q ss_pred             EEcCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 024097          200 FVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       200 ~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++..+.+.           ...+++.+.++|||||.|.+.
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            88654221           257999999999999999873

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.59  E-value=1.2e-15  Score=128.09  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||||||+|..+..+++.-  .++|+|+|+|+++++.|+++....+...++.+.++|+.......     .++||
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-----~~~fD   95 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----GKEFD   95 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----SSCEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-----cccce
Confidence            467899999999999999988762  35899999999999999999887777778999999985432111     46899


Q ss_pred             EEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          198 FAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       198 lV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|++.....       ....+++++.++|+|||+++++
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            999865532       3457899999999999999974

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.1e-16  Score=128.55  Aligned_cols=106  Identities=21%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..+..+|||||||+|..+..+++..+  .+|+++|+|+++++.|++++...+.. +++++++|+.+...      +.++|
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~------~~~~f  128 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP------EPDSY  128 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC------CSSCE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccc-cccccccccccccc------ccccc
Confidence            44668999999999999998876543  58999999999999999998776654 58999999987432      25799


Q ss_pred             EEEEEcCCccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097          197 DFAFVDAEKRM-----YQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       197 DlV~~d~~~~~-----~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      |+|++......     ...+++++.++|+|||.+++.+..
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            99998765332     357899999999999999987544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=1.5e-14  Score=115.50  Aligned_cols=125  Identities=14%  Similarity=0.179  Sum_probs=100.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      ++..+.....+...+.....+.+|||++||+|..++.++.+-  ..+|+++|.++++++.+++|++..+..++++++++|
T Consensus        22 RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D   99 (182)
T d2fhpa1          22 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             CcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence            334444455555555555678999999999999999888752  348999999999999999999999988889999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHH--ccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~--~lLkpgG~lvi~  228 (272)
                      +.+.+..+...  ..+||+||+|++  ...+...++.+.  .+|+++|+|+++
T Consensus       100 ~~~~l~~~~~~--~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         100 ANRALEQFYEE--KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHHT--TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             chhhhhhhccc--CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            99887765432  358999999997  445677788875  579999999985

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.57  E-value=4.5e-15  Score=122.23  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=90.9

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      ...|.....+...+...++.+|||||||+|+.|..+++..   ++|+++|+++++++.|++++..  . .+++++.+|..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~-~nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--Y-NNIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--C-SSEEEEESCGG
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--c-cccccccCchh
Confidence            4567776677777788899999999999999999999874   5999999999999999998753  3 47999999987


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+.      .++||.|++.+..+..+   +.+.+.|+|||.||+-
T Consensus       127 ~g~~~------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         127 LGYEE------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GCCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             hcchh------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence            64332      47899999987755543   4566789999999983

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=4.7e-15  Score=121.36  Aligned_cols=117  Identities=24%  Similarity=0.393  Sum_probs=97.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  179 (272)
                      +....|.....+..++...++.+|||||||+|+.+..+++.++  ++|+++|.+++.++.|++++++.+.. +++++++|
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd  135 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGD  135 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECc
Confidence            3456788877778888899999999999999999999998764  68999999999999999999999886 69999999


Q ss_pred             hhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+..+.      .++||.|++.+.....+.   .+...|+|||.+++-
T Consensus       136 ~~~g~~~------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         136 GSKGFPP------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GGGCCGG------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEEE
T ss_pred             cccCCcc------cCcceeEEeecccccCCH---HHHHhcCCCCEEEEE
Confidence            9875443      489999999887655433   355679999999974

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.5e-15  Score=122.83  Aligned_cols=124  Identities=9%  Similarity=-0.054  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC-------------
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-------------  168 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-------------  168 (272)
                      ...+...+++..++...++.+|||+|||+|..+.+||+.   +.+|||||+|+.+++.|++.....+             
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~  104 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV  104 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence            467878888888888888899999999999999999985   6799999999999999988754321             


Q ss_pred             ---CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          169 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       169 ---~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                         ...++++.++|..+..+..     .+.||+|+....     ......+++.+.++|||||.+++....+.
T Consensus       105 ~~~~~~~v~~~~~d~~~l~~~~-----~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~  172 (229)
T d2bzga1         105 FKSSSGNISLYCCSIFDLPRTN-----IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD  172 (229)
T ss_dssp             EEETTSSEEEEESCGGGGGGSC-----CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred             eeecCCcEEEEEcchhhccccc-----cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence               1246899999998754432     578999986543     34567899999999999999877655543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=1.1e-14  Score=126.69  Aligned_cols=109  Identities=24%  Similarity=0.364  Sum_probs=92.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++.+|+.++++++++|+.+.+..+...  ..+||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~-g-a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~--~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhc-C-CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc--cCCCC
Confidence            45789999999999999998875 2 35899999999999999999999999888999999999877665432  47899


Q ss_pred             EEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|++|.+.            ..+..++..+.++|+|||+|++...
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99999872            2356678888999999999998653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.4e-14  Score=121.09  Aligned_cols=120  Identities=17%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             CCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097          100 QMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~  177 (272)
                      .....|++..++...+...  .+.+|||+|||+|..++.++...| +.+|+++|+|+.+++.|++|+++.++. ++++++
T Consensus        87 VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~  164 (274)
T d2b3ta1          87 TLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQ  164 (274)
T ss_dssp             SCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEEC
T ss_pred             ccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeee
Confidence            3344577777776655443  456899999999999999999987 789999999999999999999999985 699999


Q ss_pred             cChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097          178 GLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|..+.++       .++||+|+++.+.                            ..+..+++.+.++|+|||.+++.
T Consensus       165 ~d~~~~~~-------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         165 SDWFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             CSTTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccccccC-------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            99987543       4699999998651                            11345778888999999999995

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=2e-14  Score=124.55  Aligned_cols=111  Identities=24%  Similarity=0.362  Sum_probs=92.4

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      .....++++|||++||+|..+++++..   ..+|+++|+|+.+++.|++|++.+|+. +++++++|+.+.+..+...  .
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~--~  213 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE--G  213 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT--T
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh--h
Confidence            344557889999999999999998864   469999999999999999999999986 5999999999887665432  4


Q ss_pred             CceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ++||+|++|.+.            ..+..++..+.++|+|||+|++...
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            689999999761            2355678888999999999998644

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.2e-14  Score=122.77  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEEEcChh
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAA  181 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~  181 (272)
                      .....++..++...++++|||||||+|..+..|++.   +.+|+|+|+|++|++.|+++....+..   .+..+...+..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~  118 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  118 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccc
Confidence            445567777777778889999999999999999985   469999999999999999988776553   23456667765


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCC-----------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          182 DSLKALILNGEASSYDFAFVDAE-----------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~-----------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .....+.   ..++||+|++...           ..+...+++++.++|||||+++++-
T Consensus       119 ~~~~~~~---~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         119 TLDKDVP---AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             GHHHHSC---CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccC---CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            5432221   1468999987532           1235678999999999999999963

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.55  E-value=7.3e-15  Score=119.95  Aligned_cols=107  Identities=18%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|+.+..+++.++ .++|+|+|+++.+++.++++.+..+   ++.++.+|+.......   .....
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~---~~~~~  125 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS---GIVEK  125 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT---TTCCC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc---cccce
Confidence            345789999999999999999999987 6799999999999999999887653   6999999886532110   11357


Q ss_pred             eEEEEEcCC-ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~-~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|+||.+.. ......++.++.+.|||||.+++..
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888888754 4456678999999999999998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=4.3e-15  Score=122.40  Aligned_cols=118  Identities=16%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCC-----CcEEEEEeCChhHHHHHHHHHHHhCC----C
Q 024097          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGV----S  170 (272)
Q Consensus       102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~~~----~  170 (272)
                      ...|.....+..++  ...++.+|||||||+||.|..+++.+++     ..+|+++|+++++++.|++++...+.    .
T Consensus        61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~  140 (223)
T d1r18a_          61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  140 (223)
T ss_dssp             ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence            44565555555544  5678899999999999999999987532     35899999999999999998765432    1


Q ss_pred             CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       171 ~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++.++++|..+..+.      .++||.|++.+.....+   +.+.+.|+|||++|+-
T Consensus       141 ~nv~~~~~d~~~~~~~------~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         141 GQLLIVEGDGRKGYPP------NAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             TSEEEEESCGGGCCGG------GCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cEEEEEeccccccccc------ccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            3699999999875433      47999999998866543   3467899999999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.54  E-value=1e-14  Score=120.25  Aligned_cols=103  Identities=11%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ..+....++++|||||||+|..+..+++.   +.+|+|+|+|+++++.|+++.     .++++++++++.+...      
T Consensus        13 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~------   78 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL------   78 (225)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC------
T ss_pred             HHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc------
Confidence            44555667889999999999999998875   458999999999999998764     2369999999876421      


Q ss_pred             CCCceEEEEEcCC---ccchHHHHHHHH-ccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAE---KRMYQEYFELLL-QLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~---~~~~~~~l~~~~-~lLkpgG~lvi~d  229 (272)
                       +++||+|++...   ..+...++.++. ++|+|||.+++.-
T Consensus        79 -~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          79 -PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             -SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence             578999998765   345677888887 7999999999863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=5.2e-15  Score=122.76  Aligned_cols=95  Identities=17%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++.   +.+|+|+|+|+.+++.|+++.    ..   .++.+|+.+. +.     ++++||+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~~-----~~~~fD~  105 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-PF-----PSGAFEA  105 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-CS-----CTTCEEE
T ss_pred             CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---cccccccccc-cc-----ccccccc
Confidence            5679999999999999999874   569999999999999998753    22   3567888663 21     2589999


Q ss_pred             EEEcCC----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAE----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++...    ..+...+++++.++|||||+++++-
T Consensus       106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            997543    3467789999999999999999864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=5.7e-14  Score=110.99  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=81.7

Q ss_pred             HHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097          108 AQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       108 ~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  186 (272)
                      ..+...+... .++.+|||+|||+|..++.++..   +++++++|.++++++.+++|++..++.+++..  .++...+..
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~--~~~d~~~~~  103 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVA--LPVEVFLPE  103 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEEC--SCHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceee--eehhccccc
Confidence            3344444433 46789999999999999987764   57899999999999999999999999765544  444333332


Q ss_pred             HHhCCCCCceEEEEEcCCc-cchHHHHHHH--HccCCCCcEEEEe
Q 024097          187 LILNGEASSYDFAFVDAEK-RMYQEYFELL--LQLIRVGGIIVID  228 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~-~~~~~~l~~~--~~lLkpgG~lvi~  228 (272)
                      ...  ...+||+||+|++. .+....+..+  ..+|+|||+++++
T Consensus       104 ~~~--~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         104 AKA--QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHH--TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccc--cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            211  14689999999872 2333444444  3689999999985

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.51  E-value=5.3e-14  Score=114.24  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ....|||||||+|..+..+|+..| +..++|+|+++.++..|.+++.+.++. ++.++.+|+.+....+    ...++|.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~----~~~~~~~  104 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF----EDGEIDR  104 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS----CTTCCSE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc----cCCceeh
Confidence            345899999999999999999987 789999999999999999999999986 5999999997754332    2578999


Q ss_pred             EEEcCCccc-----------hHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRM-----------YQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++..+.+.           ...+++.+.++|+|||.|.+
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            988654211           36899999999999999976

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=3.6e-14  Score=119.43  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .++.+|||+|||+|..++.+|+. + .++|+++|+|+.+++.+++|++.+++.++++++++|+.+..+       .+.||
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-------~~~~D  176 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  176 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-------CCCCC
Confidence            57899999999999999999986 3 469999999999999999999999999999999999987532       47899


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .|+++.+.. ...+++.+.++|++||+|.+++.
T Consensus       177 ~Ii~~~p~~-~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         177 RILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             EEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCCCc-hHHHHHHHHhhcCCCCEEEEEec
Confidence            999986543 34578889999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=6.5e-15  Score=123.83  Aligned_cols=105  Identities=16%  Similarity=0.133  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+..+|||+|||+|..+..++....  .+|+++|+++.+++.|++++..   ..+++++++|+.+...      ++++||
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~d~~~~~~------~~~~fD  160 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMETATL------PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSEEEEEESCGGGCCC------CSSCEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---cccceeEEcccccccc------CCCccc
Confidence            4567999999999999998886543  4899999999999999987642   2358999999976422      257899


Q ss_pred             EEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          198 FAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       198 lV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +|++.....     +...+++++.+.|+|||+|++.+....
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            999876533     245789999999999999999765544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.51  E-value=3.3e-14  Score=119.56  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...+.++|||||||+|..+..++++.| +.+++++|+ |++++.++++++..++.++++++.+|..+..        +..
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~--------p~~  147 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVT  147 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--------ccc
Confidence            345668999999999999999999987 789999998 8899999999999999999999999987532        357


Q ss_pred             eEEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ||+|++....     +....+++++.+.|||||.++|.+..
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            9999986553     23457899999999999988887654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.50  E-value=1.5e-13  Score=117.68  Aligned_cols=118  Identities=15%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             HHHHHHH-hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHH
Q 024097          109 QLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKA  186 (272)
Q Consensus       109 ~~l~~l~-~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~  186 (272)
                      .++..++ ...++++|||++||+|.+++.++..   +++|++||.|+.+++.|++|++.+++.+ +++++++|+.+.+..
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~  197 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQR  197 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHH
Confidence            3344333 3456889999999999999998874   5699999999999999999999999865 699999999998776


Q ss_pred             HHhCCCCCceEEEEEcCCc-------------cchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          187 LILNGEASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~-------------~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ....  ..+||+|++|.+.             ..+...++.+..+|+|||.+++....
T Consensus       198 ~~~~--~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         198 EERR--GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             HHHH--TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             Hhhc--CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            5433  3789999999761             12344556778999999976665443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.50  E-value=1.4e-13  Score=119.08  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=92.1

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++++|||++||+|..++.++.. + ..+|+++|+++.+++.+++|++.+++. .+++++.+|+.+.++.+...  ..+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~-g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~--~~~  217 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG-G-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLT  217 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT-T-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC-C-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh--cCC
Confidence            346889999999999999987763 2 348999999999999999999999985 57999999999988776543  368


Q ss_pred             eEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ||+|++|.+.            ..+..+++.+.++|+|||+|++...
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9999999761            2366788889999999999998543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=2.8e-14  Score=117.71  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=85.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   .++..+.+|+.......   .....
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~---~~~~~  143 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYR---ALVPK  143 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGT---TTCCC
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCccccc---ccccc
Confidence            3567899999999999999999999987899999999999999999877543   35778888775422110   11468


Q ss_pred             eEEEEEcCCcc-chHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~-~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+||.+.... ....+++++.+.|||||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            99999987644 4567899999999999999875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=3e-14  Score=117.84  Aligned_cols=109  Identities=14%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|||+|||+|+.+..+++..+ +++|+|+|+|+.+++.++++...   ..++.++.+|+....... .  ....
T Consensus        71 ~ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~-~--~~~~  143 (230)
T d1g8sa_          71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE---RENIIPILGDANKPQEYA-N--IVEK  143 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT---CTTEEEEECCTTCGGGGT-T--TCCC
T ss_pred             CCCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhh---hcccceEEEeeccCcccc-c--ccce
Confidence            456789999999999999999999876 78999999999999999887543   246888888886643221 0  1234


Q ss_pred             eEEEEEcCC-ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~-~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+++.+.. ..+...++.++.+.|||||.+++..-.
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            555665544 445667799999999999999886543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.5e-13  Score=109.66  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      +.....++..+-....+.+|||++||+|..++..+.+-  ..+|++||.++.+++.+++|++..+.. +++++.+|+.+.
T Consensus        28 ~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~  104 (183)
T d2fpoa1          28 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSF  104 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHH
T ss_pred             HHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-ceeeeeeccccc
Confidence            33444445555455688899999999999999877752  348999999999999999999987765 589999999876


Q ss_pred             HHHHHhCCCCCceEEEEEcCCc--cchHHHHHHHH--ccCCCCcEEEEe
Q 024097          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLL--QLIRVGGIIVID  228 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~--~~~~~~l~~~~--~lLkpgG~lvi~  228 (272)
                      +...     ..+||+||+|++.  ..+...++.+.  .+|+++|+++++
T Consensus       105 l~~~-----~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         105 LAQK-----GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HSSC-----CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cccc-----ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            6432     5789999999873  34566777765  479999999985

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.1e-14  Score=119.17  Aligned_cols=94  Identities=19%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++.+|||||||+|..+..+++..+ +.+++|+|+|+.+++.|++..      .++++.++|+.+.. .     .+++||+
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~-~-----~~~sfD~  150 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP-F-----SDTSMDA  150 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS-B-----CTTCEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhcc-C-----CCCCEEE
Confidence            567999999999999999999876 789999999999999988753      25899999997632 1     2589999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |++......    ++++.++|||||++++..
T Consensus       151 v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         151 IIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             EeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence            998765544    567899999999999863

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.1e-13  Score=117.41  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC----C-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCE--EEEEcChhHHHHHHHhC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL----P-ESGCLVACERDARSLEVAKKYYERAGVSHKV--KIKHGLAADSLKALILN  190 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~----~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v--~~~~~d~~~~~~~~~~~  190 (272)
                      .+..+|||||||+|..+..+++.+    + ...+++++|+|+.+++.+++++........+  .+...++.+........
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            344589999999999999887653    2 1347899999999999999988654433344  45566665544433333


Q ss_pred             CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...++||+|++...   ..+...+++++.++|+|||.+++..
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            34689999998765   4457789999999999999998853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=6.9e-14  Score=113.48  Aligned_cols=99  Identities=22%  Similarity=0.315  Sum_probs=77.7

Q ss_pred             HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      +....+..+|||||||+|..+..+.       +++|+|+|+.+++.|+++        +++++++|+.+...      .+
T Consensus        31 ~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~   89 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KD   89 (208)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CT
T ss_pred             HHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc------cc
Confidence            3344556689999999998876653       468999999999998863        48999999976421      15


Q ss_pred             CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      ++||+|++...   ..+...+++++.++|+|||.+++......
T Consensus        90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccccccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            79999998765   34577899999999999999999875443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.3e-12  Score=113.60  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-------CC-CCCEE
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------GV-SHKVK  174 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~~-~~~v~  174 (272)
                      ..+....-+...+...++.+|||||||+|..+..+|+..+ ..+++|||+++.+++.|+++.+..       |. ..+++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            3444444444555667889999999999999999998876 568999999999999998876543       33 24699


Q ss_pred             EEEcChhHHHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          175 IKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       175 ~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ++++|+.+....-.    ....|+|++...  ..+....+.++.+.|||||.||+...+
T Consensus       214 ~~~gd~~~~~~~~~----~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         214 LERGDFLSEEWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             EEECCTTSHHHHHH----HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             EEECcccccccccc----cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            99999976421100    023588888654  345667889999999999999986544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=7.7e-13  Score=114.97  Aligned_cols=106  Identities=20%  Similarity=0.233  Sum_probs=84.5

Q ss_pred             HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ....++++|||||||+|..++.++++-  ..+|+++|.++ +++.|+++.+..+..+++++++++..+...      .++
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~  104 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFP  104 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSS
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------ccc
Confidence            344678999999999999999888752  35899999986 678999999999999999999999876421      147


Q ss_pred             ceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          195 SYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       195 ~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +||+|++...      ......++....++|||||+++-+.
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~  145 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK  145 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence            8999997532      2345667888889999999987443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.1e-13  Score=115.01  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=83.5

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ..++++|||||||+|..++.+++. + ..+|+++|.++. ...++++.+.+++.++++++++++.+...      ..++|
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~  101 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKV  101 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc------cccee
Confidence            457899999999999999998885 2 258999999975 57778888889999999999999977421      14789


Q ss_pred             EEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          197 DFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       197 DlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      |+|++...      ......++..+.++|+|||.++-..
T Consensus       102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             EEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            99987533      2346778888899999999987543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=112.18  Aligned_cols=105  Identities=13%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++++|||||||+|..++.+|++-  ..+|+++|.++.+. .+++.....+..++++++++++.+...      ..++
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~  102 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL------PVEK  102 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC------SCSC
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC------cccc
Confidence            44578899999999999999999863  25899999999875 466677778888899999999977421      1479


Q ss_pred             eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||+|++...      ......++....++|+|||+++...
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~  142 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDI  142 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccc
Confidence            999997533      1234556666778999999998543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=2.7e-12  Score=109.30  Aligned_cols=106  Identities=14%  Similarity=0.287  Sum_probs=86.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---CCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...+++||-||.|.|..+..+++..+ ..+|+++|+++++++.+++.+....   ..+|++++.+|+.+.+...     .
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  160 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----K  160 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----S
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----C
Confidence            35689999999999999999887643 6799999999999999999876432   2468999999999877643     5


Q ss_pred             CceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...+        ...++++.+.+.|+|||++++.
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            7899999986421        1468999999999999999986

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=2.7e-12  Score=110.48  Aligned_cols=106  Identities=19%  Similarity=0.213  Sum_probs=87.7

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--C--CCCCEEEEEcChhHHHHHHHhCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ...+++||.||.|.|..+..+++..+ ..+|+++|++++.++.|++.+...  +  -..|++++.+|+.+.+...     
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-----
Confidence            45789999999999999999887643 679999999999999999988542  1  2468999999999988764     


Q ss_pred             CCceEEEEEcCCcc----------chHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR----------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~----------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +++||+|++|....          ...++++.+.+.|+|||++++.
T Consensus       149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            57899999986311          1367999999999999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=4.8e-12  Score=101.41  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=88.6

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++..+||++||+|..+..+++.++ +++|+|+|.++++++.|+++++..+  +++.++++++.+....+.. ...++
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~-~~~~~   95 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKT-LGIEK   95 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHH-TTCSC
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHH-cCCCC
Confidence            456778999999999999999999997 7899999999999999999986644  5799999998765333222 22479


Q ss_pred             eEEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ||.|+.|.+..            .....+..+.++|+|||.+++-+
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            99999986532            24466788889999999998743

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.33  E-value=1.2e-12  Score=107.87  Aligned_cols=120  Identities=16%  Similarity=0.276  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      .-.|....++..++...+|++|||||++.|+++++++..+   ...++++++|+++.......      ...++++++++
T Consensus        63 ~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~g  136 (232)
T d2bm8a1          63 LKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQG  136 (232)
T ss_dssp             CSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEEC
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeec
Confidence            3458888888999999999999999999999999887643   45789999999876543221      12357999999


Q ss_pred             ChhH--HHHHHHhCCCCCceEEEEEcCCccchHHHHH-HHHccCCCCcEEEEeCCC
Q 024097          179 LAAD--SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       179 d~~~--~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~d~~  231 (272)
                      |..+  .+..+    ....+|+||+|+.+.......+ ...++|++||+++++|+.
T Consensus       137 Ds~~~~~~~~l----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         137 DCSDLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             CSSCSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ccccHHHHHHH----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            9754  22222    1356899999987554333332 245899999999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=1.8e-11  Score=102.93  Aligned_cols=122  Identities=16%  Similarity=0.328  Sum_probs=93.3

Q ss_pred             CCCCCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE
Q 024097          100 QMQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~  176 (272)
                      .....|++..++.....   ..+..+|+|+|||+|..+..+++. + +++|+++|+|+++++.|++|.++.++.+++.+.
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            33455666666665443   345679999999999999998864 4 789999999999999999999999999999999


Q ss_pred             EcChhHHHHHHHhCCCCCceEEEEEcCCc-------------c---------chHHHHHH-HHccCCCCcEEEEe
Q 024097          177 HGLAADSLKALILNGEASSYDFAFVDAEK-------------R---------MYQEYFEL-LLQLIRVGGIIVID  228 (272)
Q Consensus       177 ~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-------------~---------~~~~~l~~-~~~lLkpgG~lvi~  228 (272)
                      .++..+..+..     .++||+|+++.+-             +         +-..+++. +.++|+|||.+++.
T Consensus       166 ~~~~~~~~~~~-----~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         166 KGEFLEPFKEK-----FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             ESSTTGGGGGG-----TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ecccccccccc-----cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            99998765432     4789999998650             0         00123333 45789999999986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.4e-12  Score=108.34  Aligned_cols=107  Identities=17%  Similarity=0.297  Sum_probs=86.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---CCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....+++||-||.|.|..+..+++..+ ..+++.+|++++.++.|++.+...   ....|++++.+|+.+.+...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            345789999999999999999887643 679999999999999999987542   22468999999999987643     


Q ss_pred             CCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            57899999996421       1346899999999999999986

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=1.1e-11  Score=109.86  Aligned_cols=122  Identities=18%  Similarity=0.188  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC-------C-CCCEEE-
Q 024097          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-------V-SHKVKI-  175 (272)
Q Consensus       105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~-------~-~~~v~~-  175 (272)
                      +....-+...+...++++|||||||+|..++.+|...+ ..+++|||+++.+++.|+++.+..+       . ...+.+ 
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            33333333445567889999999999999999999876 5699999999999999998877532       1 122333 


Q ss_pred             EEcChhHH--HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          176 KHGLAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       176 ~~~d~~~~--~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ..++..+.  ....     -..+|+|++...  ..+....+.++++.|||||.||..+.+.
T Consensus       281 ~~~~f~~~~~~d~~-----~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         281 LKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             ESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             eeechhhccccccc-----cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            34444332  1211     256889998654  4456778999999999999999876553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.31  E-value=5.3e-12  Score=106.64  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=88.0

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-C--CCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G--VSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ..++++||-||.|.|..+..+++..+ ..+|+.+|++++.++.|++.+... +  -..|++++.+|+...+...     .
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-----~  146 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----E  146 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----C
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-----C
Confidence            45678999999999999999987644 579999999999999999987542 1  2458999999999887653     5


Q ss_pred             CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...+       ...++++.+.+.|+|||+++..
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            7899999996522       2568999999999999999976

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.31  E-value=1.1e-11  Score=98.76  Aligned_cols=125  Identities=14%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEc
Q 024097          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHG  178 (272)
Q Consensus       100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~  178 (272)
                      ++..+.....+...+-....+.+|||+.||||..++..+.+-  ..+|+.||.+...++..++|++..+..+ ...+...
T Consensus        24 RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~  101 (183)
T d2ifta1          24 RPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ  101 (183)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred             CcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccc
Confidence            344555566666666556688899999999999999988752  3599999999999999999999988754 5777878


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHH--ccCCCCcEEEEeC
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVIDN  229 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~--~lLkpgG~lvi~d  229 (272)
                      |+.+.+...   ....+||+||+|++..  .+...++.+.  .+|+++|+++++.
T Consensus       102 d~~~~l~~~---~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         102 SSLDFLKQP---QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             CHHHHTTSC---CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccccc---ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            776654321   1235799999999843  3566777765  5799999999963

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.30  E-value=6.5e-12  Score=107.44  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=98.8

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---CCCCEEEEEcChhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....+++||-||.|.|..+..+++..+ ..+|+.+|+++++++.+++.+....   -..|++++.+|+.+.+...     
T Consensus       103 ~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~-----  176 (312)
T d2b2ca1         103 AHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----  176 (312)
T ss_dssp             HSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----
T ss_pred             cCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC-----
Confidence            345789999999999999999987543 5699999999999999999875422   1368999999999988653     


Q ss_pred             CCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS  265 (272)
Q Consensus       193 ~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (272)
                      .++||+|++|...+       ...++++.+.+.|+|||+++...-       .+.........+...++.+...-.+..+
T Consensus       177 ~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~-------s~~~~~~~~~~i~~~l~~vF~~v~~y~~  249 (312)
T d2b2ca1         177 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE-------SVWLHLPLIAHLVAFNRKIFPAVTYAQS  249 (312)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC-------CTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC-------ChHHhHHHHHHHHHHhhhccceEEEeee
Confidence            57899999986522       246789999999999999998621       1111222333444455554444334444


Q ss_pred             Eeec
Q 024097          266 MKEV  269 (272)
Q Consensus       266 ~lp~  269 (272)
                      .+|.
T Consensus       250 ~vPt  253 (312)
T d2b2ca1         250 IVST  253 (312)
T ss_dssp             ECTT
T ss_pred             ccCC
Confidence            5554

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=1e-11  Score=105.03  Aligned_cols=105  Identities=17%  Similarity=0.250  Sum_probs=85.7

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---------CCCCCEEEEEcChhHHHHH
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------GVSHKVKIKHGLAADSLKA  186 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~~~  186 (272)
                      ...++++||.||+|.|..+..+++. + ..+|+.+|+++++++.|++.+...         ...+|++++.+|+.+.+..
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             cCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            3467899999999999999888764 4 468999999999999999876422         2346899999999988764


Q ss_pred             HHhCCCCCceEEEEEcCCccc-------hHHHHHHHHccCCCCcEEEEe
Q 024097          187 LILNGEASSYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       187 ~~~~~~~~~fDlV~~d~~~~~-------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                            .++||+|++|.....       ..++++.+.+.|+|||++++.
T Consensus       147 ------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         147 ------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             ------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence                  478999999865221       367999999999999999875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.1e-11  Score=103.50  Aligned_cols=85  Identities=20%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +..++||||||+|..++.++...+ +.+++|+|+++++++.|++|++.+++.+++.+++.+..+.+.........++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            346999999999999999999887 7899999999999999999999999999999998766543221111112468999


Q ss_pred             EEEcCC
Q 024097          199 AFVDAE  204 (272)
Q Consensus       199 V~~d~~  204 (272)
                      |+++.+
T Consensus       140 ivsNPP  145 (250)
T d2h00a1         140 CMCNPP  145 (250)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            999876

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.21  E-value=6.3e-11  Score=95.56  Aligned_cols=90  Identities=18%  Similarity=0.178  Sum_probs=71.0

Q ss_pred             CCCHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ..++..+..+...+.   ...+++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++..+.  +.+++.+
T Consensus        26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~  101 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG  101 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEEC
Confidence            345655555544443   346789999999999999987764 2 35999999999999999999987765  5899999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAE  204 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~  204 (272)
                      |+.+.         .++||+||+|.+
T Consensus       102 d~~~~---------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         102 DVSEF---------NSRVDIVIMNPP  118 (201)
T ss_dssp             CGGGC---------CCCCSEEEECCC
T ss_pred             chhhh---------CCcCcEEEEcCc
Confidence            98663         478999999987

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-12  Score=109.63  Aligned_cols=112  Identities=13%  Similarity=0.037  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE------------------------
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK------------------------  174 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~------------------------  174 (272)
                      ++++|||||||+|..+..++...  ..+|+|+|+|+.+++.|+++++..+......                        
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            46799999999999887776542  2479999999999999999987654321100                        


Q ss_pred             -----EEEcChhHHHHHHHhCCCCCceEEEEEcCCc-------cchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          175 -----IKHGLAADSLKALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       175 -----~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                           ....+...  .........++||+|++....       ..+..+++++.++|||||.+++.++...+
T Consensus       129 ~~~~~~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHL--GNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTS--SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhccccccccc--ccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                 00000000  000001135789999976542       35667899999999999999998776443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.19  E-value=6.5e-11  Score=94.92  Aligned_cols=87  Identities=16%  Similarity=0.226  Sum_probs=66.6

Q ss_pred             CCCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097          102 QVSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~  178 (272)
                      ...+..+..+...+..   ..+++|||+|||+|..++.++.. + ..+|+++|+++.+++.|++|+.      +++++.+
T Consensus        28 ~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-g-a~~V~~vDid~~a~~~ar~N~~------~~~~~~~   99 (197)
T d1ne2a_          28 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVA   99 (197)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEEC
T ss_pred             CCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-C-CCcccccccCHHHHHHHHHccc------cccEEEE
Confidence            3445555544443333   36889999999999999887764 2 3589999999999999998752      5889999


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCCc
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAEK  205 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~~  205 (272)
                      |+.+.         +++||+|+++.+.
T Consensus       100 D~~~l---------~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         100 DVSEI---------SGKYDTWIMNPPF  117 (197)
T ss_dssp             CGGGC---------CCCEEEEEECCCC
T ss_pred             ehhhc---------CCcceEEEeCccc
Confidence            98653         5789999999763

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.19  E-value=1e-10  Score=99.30  Aligned_cols=107  Identities=21%  Similarity=0.329  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---CCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ..++++||-||.|.|..+..+++..+ ..+++.+|++++.++.+++.+...   ....|++++.+|+.+.+...    .+
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~----~~  152 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA----AE  152 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS----CT
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc----cc
Confidence            34678999999999999999888644 569999999999999999987532   22568999999999887643    13


Q ss_pred             CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  194 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  194 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence            5899999987522       1467999999999999999986

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.1e-12  Score=105.40  Aligned_cols=114  Identities=10%  Similarity=0.005  Sum_probs=74.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-------------------------
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-------------------------  172 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-------------------------  172 (272)
                      .++.+|||||||+|..++..+...  ..+|+++|+++.+++.+++.+++....-.                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            357899999999998776545432  34899999999999999988754321100                         


Q ss_pred             ----EEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          173 ----VKIKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       173 ----v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                          ..+...|..............++||+|++...       ...+...++++.++|||||++++-+....
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence                01222222211000000012357999987543       23567889999999999999999776543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=3.8e-09  Score=89.34  Aligned_cols=124  Identities=17%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+.....++...++...++.+|||+.+|.|+=|..+++... +++|+++|+++..++..++++++.|... +.....+..
T Consensus        85 ~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~  162 (284)
T d1sqga2          85 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRY  162 (284)
T ss_dssp             EECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTC
T ss_pred             EeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccc
Confidence            44556667777777788899999999999999999998765 6899999999999999999999999864 555544443


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      ......     .+.||.|++|++..                         -...++..+.++|||||+||..-...
T Consensus       163 ~~~~~~-----~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         163 PSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             THHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             cchhcc-----cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            222211     46899999997510                         13456788889999999999876654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.4e-09  Score=93.34  Aligned_cols=123  Identities=14%  Similarity=0.164  Sum_probs=94.9

Q ss_pred             CCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097           98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (272)
Q Consensus        98 ~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v  173 (272)
                      .+..++++...+.+...+.    ..+..+|||+.||+|.+++.+++..   .+|+|+|.++.+++.|++|.+.++.. ++
T Consensus       187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~-n~  262 (358)
T d1uwva2         187 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQ-NV  262 (358)
T ss_dssp             SSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC-SE
T ss_pred             chhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccc-cc
Confidence            3466888887776665443    3467899999999999999999853   59999999999999999999999987 59


Q ss_pred             EEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +++.++..+.+.....  ....+|+|++|.+.....+.++.+.+. +|.-++.+
T Consensus       263 ~~~~~~~~~~~~~~~~--~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         263 TFYHENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             EEEECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             eeeecchhhhhhhhhh--hhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEE
Confidence            9999998765432211  136799999999977666677777654 66666655

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=2.7e-09  Score=85.90  Aligned_cols=103  Identities=12%  Similarity=0.155  Sum_probs=87.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++.+|+|||||.|.-++.+|-..| +.+++.+|.+...+...++..+..++. +++++++.+.+...       ..+
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~-------~~~  132 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS-------EPP  132 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC-------CSC
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc-------ccc
Confidence            344678999999999999999998876 789999999999999999999999986 59999999876422       368


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||+|++-+. .....+++.+.+++++||.+++-
T Consensus       133 fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         133 FDGVISRAF-ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             cceehhhhh-cCHHHHHHHHHHhcCCCcEEEEE
Confidence            999887654 45667899999999999999863

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=4.2e-09  Score=90.25  Aligned_cols=124  Identities=17%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+......+...++...++.+|||+.+|.|+-|..++..+...+.++++|+++..++..++++++.+.. ++.+...|..
T Consensus        99 ~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~  177 (313)
T d1ixka_          99 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSL  177 (313)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGG
T ss_pred             EEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccc
Confidence            445566677777777788999999999999999999999887899999999999999999999999986 4777877776


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      .. +..     ...||.|++|++..                         ...+++..+.++|||||+||..-...
T Consensus       178 ~~-~~~-----~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         178 HI-GEL-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GG-GGG-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cc-ccc-----cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            54 222     57899999997510                         12456777889999999999875543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=9e-09  Score=90.10  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=90.3

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC--------------CEEEEEcChh
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--------------KVKIKHGLAA  181 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~  181 (272)
                      ...++.+|||..||+|.-++.++...+ ..+|++.|+|+++++.+++|++.++..+              .+.+.+.|+.
T Consensus        42 ~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~  120 (375)
T d2dula1          42 NILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN  120 (375)
T ss_dssp             HHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred             HHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence            345788999999999999998887766 5689999999999999999999887643              4778888887


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+...     ...||+|.+|. ......|++.+.+.++.||+|.+...-
T Consensus       121 ~~~~~~-----~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         121 RLMAER-----HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HHHHHS-----TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhHhh-----cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            766543     46899999997 445567999999999999999996543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=6e-09  Score=86.15  Aligned_cols=99  Identities=15%  Similarity=0.105  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+..+|||||||+|..+..++++.| +.+++.+|+ |+.+       +..+..++++++.+|..+.+         ...|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~~---------p~~D  141 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFASV---------PQGD  141 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTCC---------CCEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCccccc---------ccce
Confidence            4557999999999999999999997 789999998 4433       34555679999999987532         3569


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g  234 (272)
                      ++++...     .+....+++++.+.|+|||.|++.+...+.
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~  183 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE  183 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence            9987654     333567899999999999999998876543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=7.5e-09  Score=89.14  Aligned_cols=115  Identities=12%  Similarity=0.049  Sum_probs=85.2

Q ss_pred             CHHHHHHHHHHH----hhcCCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097          104 SPDQAQLLAMLV----QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus       104 ~~~~~~~l~~l~----~~~~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      .+....+|..++    ...++.+|||.|||+|.....+...+.    ...+++|+|+++.+++.|+.+....+..  ..+
T Consensus        98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~  175 (328)
T d2f8la1          98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTL  175 (328)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhh
Confidence            455555665544    345567899999999999988876542    2358999999999999999988777653  677


Q ss_pred             EEcChhHHHHHHHhCCCCCceEEEEEcCCcc---------------------chHHHHHHHHccCCCCcEEEE
Q 024097          176 KHGLAADSLKALILNGEASSYDFAFVDAEKR---------------------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~---------------------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      .++|.....+       ..+||+|+.+.+..                     .+..+++.+.++|+|||.+++
T Consensus       176 ~~~d~~~~~~-------~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         176 LHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hccccccccc-------cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            7887755322       47899999987621                     133478999999999997654

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.79  E-value=1.6e-08  Score=83.57  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ....+|||||||+|..+..++++.| +.+++..|. |+.+       +..+..+|++++.+|+.+.         ...+|
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~---------~p~aD  140 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS---------IPNAD  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC---------CCCCS
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC---------CCCCc
Confidence            3557899999999999999999998 789999998 4433       3456678999999998762         24579


Q ss_pred             EEEEcCC-----ccchHHHHHHHHccCCCC---cEEEEeCCCCC
Q 024097          198 FAFVDAE-----KRMYQEYFELLLQLIRVG---GIIVIDNVLWH  233 (272)
Q Consensus       198 lV~~d~~-----~~~~~~~l~~~~~lLkpg---G~lvi~d~~~~  233 (272)
                      ++++...     .+....+++++.+.|+||   |.+++.+...+
T Consensus       141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~  184 (244)
T d1fp2a2         141 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  184 (244)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             EEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence            9987654     333567899999999998   66777665544

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.9e-08  Score=85.28  Aligned_cols=93  Identities=20%  Similarity=0.215  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ..+...++...++.+|||+++|.|+-|..++..+.+.++|+++|+++..++..++++++.|.. ++.+...|+....+..
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD  161 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc
Confidence            344445556678899999999999999999988877889999999999999999999999987 4999999887642211


Q ss_pred             HhCCCCCceEEEEEcCC
Q 024097          188 ILNGEASSYDFAFVDAE  204 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~  204 (272)
                      .   ..+.||.|++|++
T Consensus       162 ~---~~~~fD~VL~DaP  175 (293)
T d2b9ea1         162 P---RYHEVHYILLDPS  175 (293)
T ss_dssp             G---GGTTEEEEEECCC
T ss_pred             c---ccceeeEEeecCc
Confidence            0   0267999999975

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.74  E-value=2.6e-08  Score=80.44  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=82.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (272)
Q Consensus       104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  183 (272)
                      .+...++|..++...++.+|||.|||+|.+...+.+..+...+++++|+++..+.          +..+..++++|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhcc
Confidence            4677888888888888899999999999999988887776778999999987542          233568888888663


Q ss_pred             HHHHHhCCCCCceEEEEEcCCcc--------------------------------chHHHHHHHHccCCCCcEEEE
Q 024097          184 LKALILNGEASSYDFAFVDAEKR--------------------------------MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       184 ~~~~~~~~~~~~fDlV~~d~~~~--------------------------------~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..       ...||+|+.+.+..                                .+..+++.+.++|++||.+++
T Consensus        74 ~~-------~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          74 EP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             CC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cc-------ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            22       47899999875410                                134567888899999999766

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=5.2e-08  Score=76.68  Aligned_cols=106  Identities=13%  Similarity=0.134  Sum_probs=82.2

Q ss_pred             hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ...++..++|..+|.|+.+..+++.   +++|+|+|.++++++.+++.     ...++.+++++..+....+... ..+.
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~-~~~~   85 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL-GVER   85 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT-TCSC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc-CCCc
Confidence            4567889999999999999999985   57999999999999888763     2357999999987754433222 2478


Q ss_pred             eEEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeCC
Q 024097          196 YDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       196 fDlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +|.|+.|....            .....++....+|++||.+++-..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            99999987532            133467778899999999997543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.71  E-value=1.3e-08  Score=81.18  Aligned_cols=107  Identities=17%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             cCCCEEEEEcCccCHHHHH----HHHHCC---CCcEEEEEeCChhHHHHHHHHH--------------H----HhCCC--
Q 024097          118 LGAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY--------------E----RAGVS--  170 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~--------------~----~~~~~--  170 (272)
                      .++.+|+++|||+|--+..    +.+...   ...+|+|+|+++.+++.|++..              .    ..+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            4556999999999985433    333321   2347999999999999887421              1    11110  


Q ss_pred             ----------CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097          171 ----------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       171 ----------~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                                ..+.+...+..+..+     ...++||+|++-..     .+.....++.+.+.|+|||+|++-.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence                      123333333322110     01468999999765     3445678999999999999999853

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.70  E-value=3.6e-08  Score=80.86  Aligned_cols=102  Identities=9%  Similarity=0.048  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +++...+-+...+...++++|||||||+|..|..+++..   .+|+++|+++.+++..++++..   .++++++++|+++
T Consensus         5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~   78 (235)
T d1qama_           5 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQ   78 (235)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhh
Confidence            344455555555556688999999999999999999873   5899999999999999887632   2479999999987


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      ...      .......|+.+-+..-..+++..+.
T Consensus        79 ~~~------~~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          79 FKF------PKNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             CCC------CSSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             ccc------cccccceeeeeehhhhhHHHHHHHH
Confidence            421      0122334666665444445555543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.70  E-value=1.9e-08  Score=83.02  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +..+|||||||+|..+..++++.| +.+++.+|..+ .+       +.....++++++.+|..+..+         ..|.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P---------~ad~  142 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIP---------KADA  142 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCC---------CCSC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHH-hh-------hhcccCCceEEecccccccCC---------Ccce
Confidence            457999999999999999999998 88999999954 32       234455789999999876322         2355


Q ss_pred             EEEcC-----CccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097          199 AFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  233 (272)
Q Consensus       199 V~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~  233 (272)
                      +++..     +......+++++.+.|+|||.+++.+....
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~  182 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP  182 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence            55432     234467789999999999999888776643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=7.6e-08  Score=78.76  Aligned_cols=103  Identities=20%  Similarity=0.253  Sum_probs=85.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ...+++|||+|.|.-++.++-..| +.+++.+|.+...+...+...+..++. +++++++.+.+.....   ...++||+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~---~~~~~~D~  144 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK---DVRESYDI  144 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT---TTTTCEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc---cccccceE
Confidence            467999999999999999998877 789999999999999999999999997 5899998886542110   01368999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      |++-+.. ....+++.+.+++++||.+++
T Consensus       145 v~sRAva-~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         145 VTARAVA-RLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEECCS-CHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEhhhh-CHHHHHHHHhhhcccCCEEEE
Confidence            9987653 566789999999999999986

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=9.7e-08  Score=74.99  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=71.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCCCCc
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~  195 (272)
                      .++.+|||+||+.|.++..+.+..+..++++++|+.+.           ... +.+.++++|..+..  ..........+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccCcc
Confidence            46789999999999999999998877789999999762           123 35899999986532  11111112468


Q ss_pred             eEEEEEcCCccc--------------hHHHHHHHHccCCCCcEEEEe
Q 024097          196 YDFAFVDAEKRM--------------YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       196 fDlV~~d~~~~~--------------~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      +|+|++|.....              ....+..+.+.|++||.+|+-
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            999999975211              123355556899999999987

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.4e-07  Score=77.50  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +.+....-+...+...+...|||||+|.|..|..+++..   .+|+++|+++.+++..++.+......++++++.+|+++
T Consensus         5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           5 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            445555556666666678899999999999999999873   59999999999999999988766555689999999987


Q ss_pred             HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~  216 (272)
                      ..        ...++.|+.+-+..-...++..+.
T Consensus        82 ~~--------~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          82 TD--------LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             SC--------CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             hh--------hhhhhhhhcchHHHHHHHHHHHHH
Confidence            41        234567777766554555555544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.40  E-value=1.3e-08  Score=84.07  Aligned_cols=102  Identities=10%  Similarity=0.089  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      .+++...+-+...+...+.++|||||||+|..|..+++.   +.+|++||+++.+++.+++++.   ...+++++++|++
T Consensus        12 L~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l   85 (245)
T d1yuba_          12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDIL   85 (245)
T ss_dssp             CCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCT
T ss_pred             cCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhh
Confidence            344444455555566667889999999999999999987   3599999999999888876652   2347999999998


Q ss_pred             HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (272)
Q Consensus       182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~  215 (272)
                      +..  +    +...++.|+.+-+..-..+++..+
T Consensus        86 ~~~--~----~~~~~~~vv~NLPY~Ist~il~~~  113 (245)
T d1yuba_          86 QFQ--F----PNKQRYKIVGNIPYHLSTQIIKKV  113 (245)
T ss_dssp             TTT--C----CCSSEEEEEEECCSSSCHHHHHHH
T ss_pred             ccc--c----ccceeeeEeeeeehhhhHHHHHHH
Confidence            742  1    135666677766644334444443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.36  E-value=1e-06  Score=78.12  Aligned_cols=138  Identities=9%  Similarity=0.066  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHH----cC---CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC-----------
Q 024097           83 PEILRQLREETA----GM---RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----------  144 (272)
Q Consensus        83 ~~~l~~~~~~~~----~~---~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~-----------  144 (272)
                      .+.+.++++..-    ..   ..+..-..+...++|..++....+.+|+|-.||+|.+...+.+.+...           
T Consensus       119 ~d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~  198 (425)
T d2okca1         119 GDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLR  198 (425)
T ss_dssp             SHHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhh
Confidence            456666665532    11   124456678888999999887788999999999999998887765321           


Q ss_pred             -cEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc----------------
Q 024097          145 -GCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------------  206 (272)
Q Consensus       145 -~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~----------------  206 (272)
                       ..++|+|+++.....|+-++-..+.. ....+..+|..+..       ...+||+|+.+.+..                
T Consensus       199 ~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~  271 (425)
T d2okca1         199 DKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-------PSTLVDVILANPPFGTRPAGSVDINRPDFYV  271 (425)
T ss_dssp             HTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSS
T ss_pred             hhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-------cccccceEEecCCCCCCccccchhhhhhccc
Confidence             24899999999999999888877764 24567888876532       146899999987621                


Q ss_pred             ----chHHHHHHHHccCCCCcEEEE
Q 024097          207 ----MYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       207 ----~~~~~l~~~~~lLkpgG~lvi  227 (272)
                          ....+++.+..+|++||.+++
T Consensus       272 ~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         272 ETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             CCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccHHHHHHHHHHHhcCCCCeEEE
Confidence                134589999999999997665

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.4e-07  Score=76.54  Aligned_cols=75  Identities=12%  Similarity=-0.056  Sum_probs=59.6

Q ss_pred             CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      +++....-+...+...+++.|||||||.|..|..+++.   ..+|+++|+++.+++..++.+.   ..++++++.+|+++
T Consensus         5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~   78 (252)
T d1qyra_           5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhh
Confidence            44555555666666677889999999999999999986   3589999999999988876442   23479999999987


Q ss_pred             H
Q 024097          183 S  183 (272)
Q Consensus       183 ~  183 (272)
                      .
T Consensus        79 ~   79 (252)
T d1qyra_          79 F   79 (252)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.16  E-value=1e-06  Score=72.23  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--------CCCEEEEEcChhHHHHHHHhCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------SHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .+|||.-+|.|..+..++..   +++|+++|.++......++.++++..        ..+++++++|+.+.+...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999986   57999999999998888877766432        237999999999987654     


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .++||+|++|..
T Consensus       162 ~~~~DvIYlDPM  173 (250)
T d2oyra1         162 TPRPQVVYLDPM  173 (250)
T ss_dssp             SSCCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            467999999975

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=5.7e-06  Score=75.18  Aligned_cols=124  Identities=8%  Similarity=-0.006  Sum_probs=90.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC-----------------cEEEEEeCChhHHHHHH
Q 024097           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----------------GCLVACERDARSLEVAK  161 (272)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~-----------------~~v~~iD~s~~~~~~a~  161 (272)
                      +..-.......+|..++...++.+|+|-.||+|.+.....+.+...                 ..++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            3445677888999999888888899999999999998876654211                 25899999999999999


Q ss_pred             HHHHHhCCCCC----EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-----------------chHHHHHHHHccCC
Q 024097          162 KYYERAGVSHK----VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIR  220 (272)
Q Consensus       162 ~~~~~~~~~~~----v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-----------------~~~~~l~~~~~lLk  220 (272)
                      -++--.+....    -.+..++........     ..+||+|+.+.+..                 ....|++.+.+.|+
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~-----~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk  298 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH  298 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccc-----cccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcc
Confidence            88876665321    234555554422211     46899999987621                 13358999999999


Q ss_pred             CCcEEEE
Q 024097          221 VGGIIVI  227 (272)
Q Consensus       221 pgG~lvi  227 (272)
                      +||.+++
T Consensus       299 ~gGr~ai  305 (524)
T d2ar0a1         299 PGGRAAV  305 (524)
T ss_dssp             EEEEEEE
T ss_pred             ccCcEEE
Confidence            9997665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=9.4e-06  Score=63.14  Aligned_cols=108  Identities=16%  Similarity=0.203  Sum_probs=70.2

Q ss_pred             hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      ...++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..+......+.....
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCC
Confidence            34567899999988 4778888888865 2389999999999988865    3533111112223333333332222235


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .+|+||-.....   ..++.+.++|++||.+++-.+.
T Consensus       100 g~Dvvid~vG~~---~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         100 GADFILEATGDS---RALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             CEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred             CceEEeecCCch---hHHHHHHHHhcCCCEEEEEeec
Confidence            699988554332   3477888999999999876543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.83  E-value=2.2e-05  Score=60.65  Aligned_cols=106  Identities=21%  Similarity=0.277  Sum_probs=70.6

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      .....++.+||-+|||. |..+..+++..+ ..+|+++|.+++..+.+++    .|..+-+.....+..+.+.+.   .+
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~~~i~~~~~~~~~~v~~~---t~   93 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGATDILNYKNGHIEDQVMKL---TN   93 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCSEEECGGGSCHHHHHHHH---TT
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCccccccccchhHHHHHHHH---hh
Confidence            34566788999999986 888888888764 3479999999998888865    454321212222222322222   12


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ...+|+||-.....   ..++.+.++++|+|.+++-.+
T Consensus        94 g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          94 GKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             ccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence            35699988655433   346788899999999998554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.81  E-value=1.9e-05  Score=64.00  Aligned_cols=116  Identities=12%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097          103 VSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (272)
Q Consensus       103 ~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  180 (272)
                      ++.....+....-  ...+..+|+|+|||.|+++..++...+ ...+.|+++--...+. .......+. +-+++...+-
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~d  124 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVD  124 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Ccccccccc-ccccchhhhh
Confidence            3444444433222  234567999999999999999987643 4577888773111000 000001111 2355554443


Q ss_pred             hHHHHHHHhCCCCCceEEEEEcCCcc---------chHHHHHHHHccCCCCcEEEEe
Q 024097          181 ADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       181 ~~~~~~~~~~~~~~~fDlV~~d~~~~---------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ...+       ..+..|.|++|....         .....++.+.+.|+|||-+++-
T Consensus       125 v~~l-------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         125 VFFI-------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTTS-------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHhc-------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            2222       157899999996421         2335677778999999999884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.80  E-value=3.9e-05  Score=60.38  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE---EcChhHHHHHHHh
Q 024097          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK---HGLAADSLKALIL  189 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~  189 (272)
                      .....++++||-+|||. |..+..+++..+ ..+|+++|.+++.++.|++    .|..   .++   ..+..+.+.++. 
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~i~~~t-   90 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE---IADLSLDTPLHEQIAALL-   90 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE---EEETTSSSCHHHHHHHHH-
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhh----cccc---EEEeCCCcCHHHHHHHHh-
Confidence            35567889999999997 667788888766 5699999999999888876    3432   222   223333333322 


Q ss_pred             CCCCCceEEEEEcCCcc------------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097          190 NGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~------------~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                        ....+|.+|-....+            .....++.+.+.++|||.+++-.+.
T Consensus        91 --~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          91 --GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             --SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             --CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence              135799988543211            1346799999999999999987654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.65  E-value=5e-05  Score=58.48  Aligned_cols=104  Identities=20%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +..++.+||-+|+|. |..+..+++..+ ..+|+++|.+++.++.+++    .|..+-+.....|..+.+..+.    ++
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~~~~i~~~t----~g   95 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT----DG   95 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCHHHHHHHHc----CC
Confidence            455778999999873 446667777765 4588999999998888776    3543212112223333333331    35


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      .||+||-....   ...++.+.++++|+|.+++-.+.
T Consensus        96 g~D~vid~~G~---~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          96 GVNFALESTGS---PEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             CEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CCcEEEEcCCc---HHHHHHHHhcccCceEEEEEeec
Confidence            79999865442   34678889999999999986543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00014  Score=55.67  Aligned_cols=107  Identities=14%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++.+||=+|+|. |..+..+++..+ ..+|+++|.+++.++.|++    .|....+.....+..+....+... ..
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~~~~~~~~~~~-~g   95 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQISKESPQEIARKVEGQ-LG   95 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCHHHHHHHHHHH-HT
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHH----hCCccccccccccccccccccccc-CC
Confidence            3455778999999974 556677777765 3489999999999888866    354321111122222222221110 13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|+||-....   ...++.+.+++++||.+++-..
T Consensus        96 ~g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC---chhHHHHHHHhcCCCEEEEEec
Confidence            578998865432   3468888999999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=2.7e-05  Score=59.71  Aligned_cols=102  Identities=22%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||-+|+| .|..+..+++..  +++|+++|.+++.++.+++    .|...  .+...+-.+.....     .
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~~~~~~~~-----~   89 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKY-----F   89 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHS-----C
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE--EeeccchHHHHHhh-----h
Confidence            345678899999998 677778888875  4799999999998888766    45431  22211111223322     4


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      +.||+|+....... ...++.+.+.|+|||.+++-.+
T Consensus        90 ~~~d~vi~~~~~~~-~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          90 DTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             SCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECCC
T ss_pred             cccceEEEEecCCc-cchHHHHHHHhhccceEEEecc
Confidence            68998886432111 1125567899999999998643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.54  E-value=0.00014  Score=55.23  Aligned_cols=101  Identities=20%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||-+|+| .|..+..+++..+  .+|+++|.+++.++.+++    .|...-+.....|..+.+...     .
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~-----~   91 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD-----I   91 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----H
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh-----h
Confidence            456678899999987 4667777888764  799999999998887765    454321211112232322222     1


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ..+|.++.+...   ...++.+.++|++||.+++-.
T Consensus        92 ~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 GGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             cCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            345555554433   245788899999999999854

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.48  E-value=0.00025  Score=53.94  Aligned_cols=104  Identities=16%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC----hhHHHHHHHh
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL----AADSLKALIL  189 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~~~~~~~~  189 (272)
                      ....++.+||-+||| .|..+..+++..+  ++|+++|.+++..+.+++.    +..  ..+..-+    ..+....+..
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhc
Confidence            345677899999988 6777788888764  7999999999998888763    332  2332221    1122222211


Q ss_pred             CCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       190 ~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      . ....+|+||-....   ...++.+.+++++||.+++-..
T Consensus        94 ~-~g~g~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          94 A-IGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             H-SSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             c-cccCCceeeecCCC---hHHHHHHHHHHhcCCceEEEec
Confidence            1 13578988754432   3467888899999999998654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00011  Score=56.29  Aligned_cols=100  Identities=12%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      +..++++||-+|+  |.|..++.+++..  +.++++++.+++..+.+++    .|...-+.....|..+.+....   ..
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t---~~   95 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV---GE   95 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH---CT
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh---cc
Confidence            3457789999996  4677888889886  4799999999887776654    5654222222223333332221   24


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..+|+|+....    ...++...+.|+|+|.++.-
T Consensus        96 ~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            67998885433    24678888999999999974

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00019  Score=60.73  Aligned_cols=77  Identities=9%  Similarity=-0.002  Sum_probs=57.8

Q ss_pred             CCCHHHHHHHHHHHhhc------CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097          102 QVSPDQAQLLAMLVQIL------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (272)
Q Consensus       102 ~~~~~~~~~l~~l~~~~------~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~  175 (272)
                      .+++...+-+...+...      ....|||||.|.|..|..+++... ..+|+++|+++...+..++.+.    .+++++
T Consensus        20 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~i   94 (322)
T d1i4wa_          20 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQI   94 (322)
T ss_dssp             BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEE
T ss_pred             cCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEE
Confidence            45565555554444332      456899999999999999998632 2489999999999998877652    357999


Q ss_pred             EEcChhHH
Q 024097          176 KHGLAADS  183 (272)
Q Consensus       176 ~~~d~~~~  183 (272)
                      +++|+..+
T Consensus        95 i~~D~l~~  102 (322)
T d1i4wa_          95 LKRDPYDW  102 (322)
T ss_dssp             ECSCTTCH
T ss_pred             EeCchhhc
Confidence            99999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.37  E-value=0.00038  Score=53.42  Aligned_cols=103  Identities=14%  Similarity=0.202  Sum_probs=69.8

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhH-HHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AAD-SLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~-~~~~~~~~~~  192 (272)
                      ...++++||-+|||. |..+..+++..+ ..+|+.+|.+++..+.|++    .|...-+.....| ... ..... .   
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~-~---   95 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITEL-T---   95 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH-H---
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhh-h---
Confidence            345778999999996 888999999876 4589999999998887776    4543211111112 111 12221 1   


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~  230 (272)
                      .+.+|++|-...   ....++.+.+.+++| |.+++--.
T Consensus        96 ~~G~d~vie~~G---~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          96 AGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             TSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCcEEEEecc---cchHHHHHHHHhhcCCeEEEecCC
Confidence            467999986543   334688899999996 99998543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.27  E-value=0.00075  Score=51.15  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             HhhcCCCEEEEEcC-c-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGV-Y-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~-G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++++||-+|+ | .|..+..+++..+ ..+|+++|.+++..+.+++    .|..   .++..+..+......+...
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~   94 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE   94 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhh
Confidence            34567889999996 3 5566676777654 4699999999998887765    4543   2233333333333322222


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      .+.||+||-...   ....++.+.+.++|||.+++-..
T Consensus        95 ~~~~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          95 SKGVDAVIDLNN---SEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             TSCEEEEEESCC---CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             cccchhhhcccc---cchHHHhhhhhcccCCEEEEecc
Confidence            467998886543   23457778899999999998643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.22  E-value=0.00063  Score=51.63  Aligned_cols=106  Identities=17%  Similarity=0.152  Sum_probs=73.4

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .+|.+|+-||+| .|..+...|..++  ++|+.+|.+++.++..+..+..     +++....+.......+      ...
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~------~~a   96 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV------AEA   96 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH------HTC
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhh------ccC
Confidence            467899999999 5788888888875  8999999999998877765532     4666666654444444      468


Q ss_pred             EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                      |+|+...-   .....-.-++..+.+|||.+||=-.+...|.+
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~  139 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCV  139 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSB
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCcc
Confidence            99986543   11121234667889999987764444455543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00084  Score=50.61  Aligned_cols=102  Identities=23%  Similarity=0.189  Sum_probs=65.4

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||=.|+|. |..+..+++..  +.+|++++.+++..+.+++    .|...-+.....|..+.+...     .
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~-----~   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----V   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----H
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc-----c
Confidence            4456788999999885 55556677765  4689999999998877755    454311111112333333333     1


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|.++.+...   ...++...+.|+|||.+++-.+
T Consensus        92 ~~~~~~v~~~~~---~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          92 GGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             SSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEeecCC---HHHHHHHHHHhccCCceEeccc
Confidence            345555555442   3468889999999999998643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.11  E-value=0.00093  Score=50.83  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      ..++++||-+|+|. |..+..+++... ..+|+++|.+++..+.+++    .+..   .++..+- +......+......
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~-~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARR-DPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTS-CHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccc---eeecCcc-cHHHHHHHhhCCCC
Confidence            35678999999874 455567777665 4689999999988877765    3432   2333221 12222222122356


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      +|+||......   ..++...+.|++||.+++-.
T Consensus       101 ~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGSQ---ATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCCH---HHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCcc---hHHHHHHHHHhCCCEEEEEe
Confidence            99988655432   35788899999999999854

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.00  E-value=0.0014  Score=50.10  Aligned_cols=107  Identities=13%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             hcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh-hHHHHHHHhCCCCC
Q 024097          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEAS  194 (272)
Q Consensus       117 ~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~~  194 (272)
                      ..++++|+=+|+|. |..+..+++..+ ..+|+++|.+++.++.|++.    |-..-+.....+. .+.......   ..
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~---g~   98 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT---GN   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH---TS
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc---cc
Confidence            45778999999984 556677777765 56999999999999998874    4332122122221 121111111   35


Q ss_pred             ceEEEEEcCCccchHHHHHHHHc-cCCCCcEEEEeCCCCCC
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVIDNVLWHG  234 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~-lLkpgG~lvi~d~~~~g  234 (272)
                      .+|.++......   ..++.... +++++|.+++-.+.-.+
T Consensus        99 G~d~vi~~~g~~---~~~~~a~~~~~~~~G~~v~vG~~~~~  136 (176)
T d1d1ta2          99 NVGYTFEVIGHL---ETMIDALASCHMNYGTSVVVGVPPSA  136 (176)
T ss_dssp             CCCEEEECSCCH---HHHHHHHTTSCTTTCEEEECSCCCTT
T ss_pred             cceEEEEeCCch---HHHHHHHHHhhcCCeEEEEEEccccc
Confidence            799888765433   23444444 44566899886554333

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.93  E-value=0.0016  Score=49.75  Aligned_cols=103  Identities=15%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC--hhHHHHHHHhCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILNGE  192 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~  192 (272)
                      ...++++||-+|||. |..+..+++... ..+|+++|.+++.++.+++    .|...-+.....|  ..+.....    .
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~----~   94 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK----T   94 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH----T
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh----c
Confidence            456788999999984 556666777765 4689999999999988876    4543222222222  11222211    1


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCC-CCcEEEEeCC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVIDNV  230 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLk-pgG~lvi~d~  230 (272)
                      .+.+|.||......   ..++.....++ ++|.+++-.+
T Consensus        95 ~~G~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          95 NGGVDYAVECAGRI---ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             TSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCCCcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEEE
Confidence            35799998765432   34555665555 5688887554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0043  Score=46.72  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ....++++||=+|+| .|..+..+++..  +++++++|.+++..+.+++    .|..   .++...-.+....     ..
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~-----~~   91 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAA-----HL   91 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHT-----TT
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHH-----hc
Confidence            456678999999987 477778888876  4788899999988776654    4543   2232222121111     13


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..+|.+|.......   .++...+++++||.+++-..
T Consensus        92 ~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          92 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             CCCceeeeeeecch---hHHHHHHHHhcCCEEEEecc
Confidence            67999987654332   36677899999999998643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0013  Score=50.21  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      +..++++||=.|++  .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....|..+.+.++   .+.
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~---t~g   95 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEI---TGG   95 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHH---TTT
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHH---hCC
Confidence            44567899988655  566778888875  4899999999998887765    464321222223333333322   224


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ..+|+|+-....+    .++.....++++|.+++-...
T Consensus        96 ~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          96 KKVRVVYDSVGRD----TWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CCEEEEEECSCGG----GHHHHHHTEEEEEEEEECCCT
T ss_pred             CCeEEEEeCccHH----HHHHHHHHHhcCCeeeecccc
Confidence            6799776544332    467788899999998875444

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.66  E-value=0.0041  Score=46.78  Aligned_cols=89  Identities=20%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             EEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +|+=||||  ..+..+|+.+   ....+|+++|.+++..+.+++.    +..+   ....+.... .       ....|+
T Consensus         3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~-~-------~~~~dl   65 (171)
T d2g5ca2           3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKV-E-------DFSPDF   65 (171)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGG-G-------GTCCSE
T ss_pred             EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhh-h-------cccccc
Confidence            68889986  3433333332   2245899999999988877653    3322   121122111 1       246799


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++..+.......++.+.+.++++. +++|
T Consensus        66 Iila~p~~~~~~vl~~l~~~~~~~~-ii~d   94 (171)
T d2g5ca2          66 VMLSSPVRTFREIAKKLSYILSEDA-TVTD   94 (171)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTC-EEEE
T ss_pred             ccccCCchhhhhhhhhhhccccccc-cccc
Confidence            9998888778888888888888765 4444

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0016  Score=49.82  Aligned_cols=100  Identities=13%  Similarity=0.162  Sum_probs=64.1

Q ss_pred             hhcCCCEEEEEc--CccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097          116 QILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (272)
Q Consensus       116 ~~~~~~~VLEiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  193 (272)
                      ...++++||-.|  .|.|..+..+++..  +.+++++..+++..+.+++    .|...   ++...-.+....+.+....
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~---vi~~~~~~~~~~v~~~t~~   92 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEY---VGDSRSVDFADEILELTDG   92 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSE---EEETTCSTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccc---cccCCccCHHHHHHHHhCC
Confidence            345678999877  34677778888876  4789988888876665553    45432   2222222233333222224


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ..||+||.....    +.++.+.+.|+++|.++.-
T Consensus        93 ~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          93 YGVDVVLNSLAG----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CCEEEEEECCCT----HHHHHHHHTEEEEEEEEEC
T ss_pred             CCEEEEEecccc----hHHHHHHHHhcCCCEEEEE
Confidence            679999865442    3577888999999999974

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0072  Score=45.65  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             HhhcCCCEEEEEcC-c-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGV-Y-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~-G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ....++++||-.|. | .|..+..+++..  +++|++++.+++..+.+++    .|...  .+   |..+.......   
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~--~i---~~~~~~~~~~~---   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE--AA---TYAEVPERAKA---   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE--EE---EGGGHHHHHHH---
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce--ee---ehhhhhhhhhc---
Confidence            44567889998884 3 467778888886  4799999999987776654    45432  22   22232222211   


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ...+|+||-... .    .++.+.+.|++||.++.-.
T Consensus        89 ~~g~D~v~d~~G-~----~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 WGGLDLVLEVRG-K----EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             TTSEEEEEECSC-T----THHHHHTTEEEEEEEEEC-
T ss_pred             cccccccccccc-h----hHHHHHHHHhcCCcEEEEe
Confidence            367998875322 1    3677889999999998753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.42  E-value=0.0049  Score=47.03  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             HHhhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097          114 LVQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (272)
Q Consensus       114 l~~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  191 (272)
                      ..+..++++||-.|++  .|..+..+++..  +++|+++..+++..+.+++    .|..+-+.....+..+......   
T Consensus        24 ~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~---   94 (182)
T d1v3va2          24 VCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA---   94 (182)
T ss_dssp             TTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH---
T ss_pred             HhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh---
Confidence            3445678899987774  456777788876  4799999999887766554    4543212211222222221111   


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      ....+|+||-...    .+.++.+.+.|++||.++.-.
T Consensus        95 ~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 SPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             hcCCCceeEEecC----chhhhhhhhhccCCCeEEeec
Confidence            2467999875433    246888999999999999753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.27  E-value=0.0051  Score=46.41  Aligned_cols=101  Identities=12%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCC
Q 024097          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  191 (272)
                      ....++.+||-+|+| .|..+..+++... ...|+++|.+++..+.+++    .|..+-+....  .+..+.+...    
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~~i~~~~~~~~~~~~~~~~----   94 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATECINPQDFSKPIQEVLIEM----   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcEEEeCCchhhHHHHHHHHH----
Confidence            345678899999887 4556666777765 4689999999999888775    45432111111  1111222221    


Q ss_pred             CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ..+.+|+||-....   ...++.+..++++||.+++
T Consensus        95 ~~~g~D~vid~~G~---~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 TDGGVDYSFECIGN---VKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEE
T ss_pred             cCCCCcEeeecCCC---HHHHHHHHHhhcCCceeEE
Confidence            13579999865442   3467788889999877664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.09  E-value=0.025  Score=40.51  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ++|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       .+.+++||+.+..  .....+-...|.+
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~--~l~~~~i~~a~~v   69 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIK--TLEDAGIEDADMY   69 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHH--HHHHTTTTTCSEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchh--hhhhcChhhhhhh
Confidence            35776665  788888887763 3568999999999887665432       2678999987632  1111123578888


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      ++-.......-......+.+.+.-+++
T Consensus        70 v~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          70 IAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            775443322223444456677775554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.08  E-value=0.0072  Score=48.17  Aligned_cols=53  Identities=9%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             HHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH
Q 024097          110 LLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  165 (272)
Q Consensus       110 ~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~  165 (272)
                      ++..++..  .++..|||.-||+|..+.+..+.   +-+.+|+|++++.++.|+++++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            44444433  46789999999999887766653   3589999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.02  E-value=0.01  Score=44.82  Aligned_cols=103  Identities=14%  Similarity=0.207  Sum_probs=61.6

Q ss_pred             hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (272)
Q Consensus       116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  194 (272)
                      +..++++||-+|+|. |..+..+++... ..+|+++|.+++..+.+++    .|..+  .+...+..+...........+
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~----~Ga~~--~i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGATE--CVNPQDYKKPIQEVLTEMSNG   97 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE--EECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHH----hCCee--EEecCCchhHHHHHHHHHhcC
Confidence            456788999999864 445566666665 5799999999999888866    34331  222112111111111111146


Q ss_pred             ceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEe
Q 024097          195 SYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVID  228 (272)
Q Consensus       195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~  228 (272)
                      .+|+||......   ..++.+...+++| |.+++-
T Consensus        98 G~D~vid~~G~~---~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          98 GVDFSFEVIGRL---DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CBSEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCEEEecCCch---hHHHHHHHHHhcCCcceEEe
Confidence            799988765433   3456666677775 566654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.77  E-value=0.014  Score=46.95  Aligned_cols=56  Identities=9%  Similarity=-0.002  Sum_probs=44.7

Q ss_pred             HHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh
Q 024097          109 QLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (272)
Q Consensus       109 ~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (272)
                      +++..++..  .++..|||--+|+|..+.+..+.   +-+.+|+|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            344444443  47789999999999888877765   348999999999999999999764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.67  E-value=0.025  Score=42.05  Aligned_cols=87  Identities=14%  Similarity=0.087  Sum_probs=56.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      ++|.=||+|  ..+..+|+.+. .+.+|+++|.+++..+.+++    .+..+   ....+. +.         -...|+|
T Consensus         1 MkI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~---------~~~~DiI   61 (165)
T d2f1ka2           1 MKIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL---------LQTAKII   61 (165)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG---------GTTCSEE
T ss_pred             CEEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc---------ccccccc
Confidence            357778774  45444444431 25689999999988776654    34322   111122 21         2567999


Q ss_pred             EEcCCccchHHHHHHHHccCCCCcEEE
Q 024097          200 FVDAEKRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       200 ~~d~~~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      |+..+.......++++.+.++++.+++
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             cccCcHhhhhhhhhhhhhhccccccee
Confidence            998877778888999999888887654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.64  E-value=0.028  Score=42.83  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             CEEEEEc--CccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          121 QRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       121 ~~VLEiG--~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      ++||-.|  .|.|..++.+++.++ ...|+++..+++......   +..+...-+.....+..+.+...   . +..+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~---~-~~GvDv  103 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREA---C-PGGVDV  103 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHH---C-TTCEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHH---h-ccCceE
Confidence            6799877  457889999999875 346887777765543332   22454322223333344444433   1 356999


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ||-...    .+.++...+.|++||.++.-
T Consensus       104 v~D~vG----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         104 YFDNVG----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEecCC----chhHHHHhhhccccccEEEe
Confidence            874333    24688899999999999874

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.57  E-value=0.0035  Score=50.59  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC---CC------------------------------------CcEEEEEeCChhHHHH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL---PE------------------------------------SGCLVACERDARSLEV  159 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~---~~------------------------------------~~~v~~iD~s~~~~~~  159 (272)
                      .+..++|--||+|.+.+..+...   ++                                    ..++++.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999988766432   11                                    1246789999999988


Q ss_pred             H---HHHHHHhCCCCCEEEEEcChhHHHH--HHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCC
Q 024097          160 A---KKYYERAGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVG  222 (272)
Q Consensus       160 a---~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpg  222 (272)
                      |   ++|++.+|+.+.+++.+.|+.+..+  ....   ....++|+++.+.            +.+..++..+.+.+...
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~---~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA---GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT---TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccC---CCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence            8   5689999999999999999865322  2211   3567899998761            12556666677778776


Q ss_pred             cEEEEe
Q 024097          223 GIIVID  228 (272)
Q Consensus       223 G~lvi~  228 (272)
                      .++++.
T Consensus       207 s~~~it  212 (249)
T d1o9ga_         207 AVIAVT  212 (249)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            767664

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.56  E-value=0.0078  Score=49.49  Aligned_cols=46  Identities=7%  Similarity=-0.052  Sum_probs=38.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (272)
                      .++..|||.-||+|..+.+..+ +  +-+.+|+|++++.++.|++++..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~-l--gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAER-E--SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4778999999999988777665 3  35899999999999999988744

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.46  E-value=0.023  Score=42.61  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=60.1

Q ss_pred             HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCCC
Q 024097          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~  192 (272)
                      ....++++|+-+|+|. |..+..+++... ..+|+++|.+++.++.+++    .|..+-+.....+ ..+.......   
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~~---   95 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT---   95 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH---
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhhc---
Confidence            3456788999999987 445555666654 5689999999998888765    4543211111111 1111111111   


Q ss_pred             CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEE
Q 024097          193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVI  227 (272)
Q Consensus       193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi  227 (272)
                      ...+|+|+-....   ...++.+..++++| |++++
T Consensus        96 ~~G~d~vid~~G~---~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          96 NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred             cCCcceeeeecCC---HHHHHHHHHHhhCCCcceeE
Confidence            3578999865543   23456666666665 55554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.11  Score=41.35  Aligned_cols=85  Identities=16%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .+++.||-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.++..+...++.++++|..+.  ...+.+.-  .
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            57889999997765 566666655 246899999999999998888888887767888999988652  11111100  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++.++
T Consensus        87 ~g~iD~lVnnA   97 (257)
T d1xg5a_          87 HSGVDICINNA   97 (257)
T ss_dssp             HCCCSEEEECC
T ss_pred             cCCCCEEEecc
Confidence            26799988764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.28  E-value=0.018  Score=43.87  Aligned_cols=112  Identities=18%  Similarity=0.147  Sum_probs=66.6

Q ss_pred             hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-----CCEE------------EEEc
Q 024097          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-----HKVK------------IKHG  178 (272)
Q Consensus       117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~------------~~~~  178 (272)
                      ..+|.+|+-||+| .|..+...|..++  ++|+.+|.++...+..+....+.-..     ...+            +...
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3578899999999 4777888888874  89999999999888776643211000     0000            1101


Q ss_pred             ChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097          179 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  236 (272)
Q Consensus       179 d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~  236 (272)
                       ..+.+...     -...|+|+....   .....-.-++..+.+|||.+||=-.+...|.+
T Consensus       104 -~~~~l~~~-----l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~  158 (183)
T d1l7da1         104 -QAEAVLKE-----LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  158 (183)
T ss_dssp             -HHHHHHHH-----HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             -HHHHHHHH-----HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCcc
Confidence             11112111     146899987543   11111234667889999997765445555543

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.10  E-value=0.015  Score=44.54  Aligned_cols=108  Identities=11%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             HhhcCCCEEEEEcCc---cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH---HHHHH
Q 024097          115 VQILGAQRCIEVGVY---TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS---LKALI  188 (272)
Q Consensus       115 ~~~~~~~~VLEiG~G---~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~  188 (272)
                      ....++.+||=+..|   .|..++.+++..  +++++++-.+++..+...+.++..|...-+.....+..+.   .....
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            345566778877333   466777888886  4788888666666666666666777653222211122222   22211


Q ss_pred             hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       189 ~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .. ....+|+||-...    .+.++...+.|++||.++.-.
T Consensus       102 ~~-~g~~vdvv~D~vg----~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ-SGGEAKLALNCVG----GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HH-HTCCEEEEEESSC----HHHHHHHHHTSCTTCEEEECC
T ss_pred             hh-ccCCceEEEECCC----cchhhhhhhhhcCCcEEEEEC
Confidence            11 1356898883322    234677889999999999753

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.00  E-value=0.0084  Score=48.42  Aligned_cols=52  Identities=15%  Similarity=0.084  Sum_probs=40.9

Q ss_pred             EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc----------cc----hHHHHHHHHccCCCCcEEEEe
Q 024097          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------RM----YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~----------~~----~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      -.++.||.++.+..+    +++++|+||.|.+-          ..    ....++++.++|+|||.+++.
T Consensus         5 ~~~~~~D~le~l~~l----~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKL----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTS----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhC----cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            468889999988876    36899999999871          12    345677788999999998874

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.95  E-value=0.038  Score=45.20  Aligned_cols=96  Identities=14%  Similarity=-0.001  Sum_probs=62.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~  200 (272)
                      .+|||+-||.|+++..+-++ + --.+.++|+++.+.+.-+.|+     .  -.++.+|..+.....     -...|+++
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~-----~~~~dll~   66 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE-----FPKCDGII   66 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGG-----SCCCSEEE
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhH-----cccccEEe
Confidence            47999999999999888765 2 124669999998887776664     2  256778887643221     25689988


Q ss_pred             EcCC------------ccchH-HH---HHHHHccCCCCcEEEEeCCC
Q 024097          201 VDAE------------KRMYQ-EY---FELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       201 ~d~~------------~~~~~-~~---l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ...+            ..+.. ..   +-.+.+.++| -++++.||.
T Consensus        67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~P-k~~~lENV~  112 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP-IFFLAENVK  112 (324)
T ss_dssp             ECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             ecccccccccccccccccccccchHHHHHHHHHhhCC-ceeeccccc
Confidence            6533            11111 11   2224566788 578888884

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.93  E-value=0.0088  Score=47.63  Aligned_cols=51  Identities=20%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             EEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-----------------chHHHHHHHHccCCCCcEEEEe
Q 024097          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-----------------~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ++++||.++.+..+.    ++++|+||.|.+-.                 .....++++.++|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lp----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            589999999988873    57999999997611                 1234677888999999988764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.69  E-value=0.014  Score=44.38  Aligned_cols=99  Identities=12%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097          118 LGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (272)
Q Consensus       118 ~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  195 (272)
                      .++++||-.|.  |.|..++.+++..  +++|+++--+++..+.+++    .|...-+. ...+..+...    .-..+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~----~~~~~g   98 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIR----PLDKQR   98 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEE-CC-------------CCSCC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHH----HhhccC
Confidence            35678998875  4566777888886  5899999999988877765    45432121 1111111111    112468


Q ss_pred             eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      +|+||-.....    .++...+.|++||.++.-...
T Consensus        99 vD~vid~vgg~----~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          99 WAAAVDPVGGR----TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             EEEEEECSTTT----THHHHHHTEEEEEEEEECSCC
T ss_pred             cCEEEEcCCch----hHHHHHHHhCCCceEEEeecc
Confidence            99777543322    478889999999999986544

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.047  Score=45.09  Aligned_cols=74  Identities=14%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      +.+|+|+.||.|+.+..+-.+ +-..+ +.++|+++.+++.-+.|+.      ...++.+|..+.......   ...+|+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~---~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD---RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH---HHCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC---CCCccE
Confidence            568999999999998887654 21223 6799999988887776642      245666777654222111   136899


Q ss_pred             EEEcC
Q 024097          199 AFVDA  203 (272)
Q Consensus       199 V~~d~  203 (272)
                      ++...
T Consensus        72 l~ggp   76 (343)
T d1g55a_          72 ILMSP   76 (343)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            88544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.48  E-value=0.048  Score=38.70  Aligned_cols=94  Identities=13%  Similarity=0.028  Sum_probs=61.0

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      +|+=  ||.|..+..+++.+. +..++.+|.+++..+..+.    .    .+.++.||+.+. ..+ ...+-+..+.+++
T Consensus         2 HivI--~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~-~~L-~~a~i~~A~~vi~   68 (129)
T d2fy8a1           2 HVVI--CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRV-SDL-EKANVRGARAVIV   68 (129)
T ss_dssp             CEEE--ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSH-HHH-HHTTCTTCSEEEE
T ss_pred             EEEE--ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----c----CccccccccCCH-HHH-HHhhhhcCcEEEE
Confidence            3444  466889999999886 5678999999998765432    2    378899998762 222 1122467788887


Q ss_pred             cCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          202 DAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       202 d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      ........-..-...+.+.|...++.-
T Consensus        69 ~~~~d~~n~~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          69 NLESDSETIHCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             CCSSHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred             eccchhhhHHHHHHHHHHCCCceEEEE
Confidence            655333333344455677888766653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.46  E-value=0.052  Score=40.57  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=59.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHh--CCCCCEE----EEEcChhHHHHHHHhCCCC
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVSHKVK----IKHGLAADSLKALILNGEA  193 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~--~~~~~v~----~~~~d~~~~~~~~~~~~~~  193 (272)
                      ++|-=||+|.-..+  ++..+. .+.+|+.+|.+++.++..++.-...  .......    ....|..+.   +      
T Consensus         2 k~iaIiGaG~~G~~--~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~------   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHA--FAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V------   70 (184)
T ss_dssp             CEEEEECCSHHHHH--HHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H------
T ss_pred             CEEEEECccHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---h------
Confidence            56777888654433  333321 2569999999998877665431100  0001111    122222222   2      


Q ss_pred             CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      ...|+||+..+.......++.+.++|+++..+++
T Consensus        71 ~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            5689999987777788899999999999987765

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.41  E-value=0.03  Score=48.08  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             hcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCC
Q 024097          117 ILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV  169 (272)
Q Consensus       117 ~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~  169 (272)
                      ..+...++|||+-.|..+..+++..+. ..+|+++|+++...+..+++++....
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            346679999999999999988876542 36999999999999999999886543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.14  E-value=0.014  Score=47.83  Aligned_cols=53  Identities=11%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc-------------c----hHHHHHHHHccCCCCcEEEEe
Q 024097          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------M----YQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------~----~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .-++++||.++.+..+    +++++|+|++|.+-.             +    ....+..+.++|+|+|.++++
T Consensus        12 ~~~l~~GD~le~l~~l----~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESF----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGS----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhC----ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            4589999999988776    368999999997611             1    345678888999999999874

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.82  E-value=0.73  Score=37.39  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhH-HHHHHHhCC-CCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD-SLKALILNG-EAS  194 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~-~~~  194 (272)
                      ..+.|+.+|||.=.-...+  ..+++.+++=+|. |+.++.-++.+++.+.  ..+..++..|..+ +...+...+ +.+
T Consensus        89 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            4567788999765544333  2334567777774 8888887888887654  3456778777765 334444433 233


Q ss_pred             ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097          195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  230 (272)
Q Consensus       195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~  230 (272)
                      ..-+++..+.     ......+++.+..+..||+.|+++-+
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3445555443     44567788999999999999999854

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.69  E-value=0.084  Score=43.36  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl  198 (272)
                      .+.+|||+-||.|+++..|-++ + --.+.++|+++.+++.-+.|+..        ..++|..+.....     ...+|+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~-----~~~~Dl   74 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKT-----IPDHDI   74 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGG-----SCCCSE
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhh-----cceeee
Confidence            5679999999999999988764 2 12467799999999988888732        1246776543221     256899


Q ss_pred             EEEcCC----------------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097          199 AFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNVL  231 (272)
Q Consensus       199 V~~d~~----------------~~~~~~~l~~~~~lLkpgG~lvi~d~~  231 (272)
                      ++...+                .......+-.+.+.++| -++++.||.
T Consensus        75 l~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP-~~~~lENV~  122 (327)
T d2c7pa1          75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKP-KVVFMENVK  122 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             eecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCC-cEEecccch
Confidence            986533                11111222334466788 578888884

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.1  Score=37.96  Aligned_cols=97  Identities=11%  Similarity=0.024  Sum_probs=58.3

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDl  198 (272)
                      +|+=+|+  |..+..+++.+. .+..++.+|.+++......+....    ..+.++.||+.+.  +...    +-+..|.
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a----~i~~a~~   74 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA----GIDRCRA   74 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH----TTTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh----ccccCCE
Confidence            5666555  677777776652 256899999998765433333321    2488999998763  2222    2357888


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      |++........-..-...+.+.|...++..
T Consensus        75 vi~~~~~d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EEEccccHHHHHHHHHHHHHhCCCCceEEE
Confidence            887655333323333445566777666653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.38  Score=38.37  Aligned_cols=105  Identities=21%  Similarity=0.094  Sum_probs=69.2

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--H----HHHHhCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~~  191 (272)
                      +++|.=|--|++.++..+++.+.  .+.+|+.++.+++..+.+.+.++..+.  ++.++.+|..+.  .    ....+. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            56775554455667777776542  257999999999999988888877654  578899988652  1    122111 


Q ss_pred             CCCceEEEEEcCCcc-----------ch-----------HHHHHHHHccCCCCcEEEEe
Q 024097          192 EASSYDFAFVDAEKR-----------MY-----------QEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       192 ~~~~fDlV~~d~~~~-----------~~-----------~~~l~~~~~lLkpgG~lvi~  228 (272)
                       .+..|+++.++...           .+           ....+.+.++|+++|.++.-
T Consensus        79 -~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 -YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             -HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             -cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence             26899999875410           01           12345556888999987764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.64  E-value=0.084  Score=37.42  Aligned_cols=92  Identities=13%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHHhCCCCCceEE
Q 024097          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYDF  198 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~fDl  198 (272)
                      +++=+|+  |..+..+++.+. .+..|+.+|.+++.++.++.    .+    ...+.||+.+  .+...    +-...|.
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a----~i~~a~~   67 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL----GIRNFEY   67 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHH----TGGGCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----Ccceeeecccchhhhcc----CCccccE
Confidence            4455555  777777777653 35689999999988766532    22    4567788765  23322    1246788


Q ss_pred             EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +++..+.......+-...+.+.+...++.
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            88765533332333333333445555554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.39  E-value=0.11  Score=38.81  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=62.9

Q ss_pred             CCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          119 GAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       119 ~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ++..||--|+  |.|..+..+|+.++  ++|+++.-+++..+.+++    .|...   ++  +..+...........+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~----lGad~---vi--~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGASE---VI--SREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCSE---EE--EHHHHCSSCCCSSCCCCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHh----hcccc---eE--eccchhchhhhcccCCCc
Confidence            3457887663  46778888998864  899999999888776655    45432   12  122211111111124679


Q ss_pred             EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097          197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  232 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~  232 (272)
                      |+|+-....    ..++...+.|+++|.+++-....
T Consensus        92 d~vid~vgg----~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          92 QGAVDPVGG----KQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEEEESCCT----HHHHHHHTTEEEEEEEEECCCSS
T ss_pred             eEEEecCcH----HHHHHHHHHhccCceEEEeeccC
Confidence            988754332    35788999999999999865443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.15  E-value=0.64  Score=34.83  Aligned_cols=80  Identities=13%  Similarity=0.119  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++||=.|++. ..+..+++.+ ..+++|+.++.+++..+...+.+.......-...-..|..+ +...     -+..
T Consensus        21 l~gK~vlItGasg-GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~-----~~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTG-PVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDAS-RAEA-----VKGA   93 (191)
T ss_dssp             CTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHH-HHHH-----TTTC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHH-HHHH-----hcCc
Confidence            4788999888544 4555555544 24689999999999888777766654321122233333333 3333     3678


Q ss_pred             EEEEEcCC
Q 024097          197 DFAFVDAE  204 (272)
Q Consensus       197 DlV~~d~~  204 (272)
                      |++|....
T Consensus        94 Dilin~Ag  101 (191)
T d1luaa1          94 HFVFTAGA  101 (191)
T ss_dssp             SEEEECCC
T ss_pred             CeeeecCc
Confidence            99987654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.08  E-value=0.21  Score=41.93  Aligned_cols=46  Identities=17%  Similarity=0.074  Sum_probs=35.5

Q ss_pred             CCEEEEEcCccCHHHHHHHHHCC------CCcEEEEEeCChhHHHHHHHHHH
Q 024097          120 AQRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYYE  165 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~~  165 (272)
                      ..+|+|+|+|+|..+.-+++.+.      ...+++.+|.|+...+.-++.+.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            34899999999999988776543      24579999999987776666553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.80  E-value=0.87  Score=35.92  Aligned_cols=84  Identities=19%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~  193 (272)
                      +++++|-.|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+...+...++.++.+|..+.  ...+.+.-  ..
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5678888887655 555555554 246899999999999988887777666666788999987542  11111100  12


Q ss_pred             CceEEEEEcC
Q 024097          194 SSYDFAFVDA  203 (272)
Q Consensus       194 ~~fDlV~~d~  203 (272)
                      +..|+++.++
T Consensus        82 G~iDiLVnnA   91 (258)
T d1iy8a_          82 GRIDGFFNNA   91 (258)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            6799988754

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.45  E-value=3.4  Score=33.67  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=66.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCC-hhHHHHHHHHHHHhC-------------------
Q 024097          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAG-------------------  168 (272)
Q Consensus       109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~~-------------------  168 (272)
                      .++..++...+...|+-+|||.=.....+....+ +  ++.+|++ |+.++.=++.+++..                   
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~--~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~  162 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-H--LAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFL  162 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-T--EEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-C--cEEEECCcHHHHHHHHHHHHhchhhhhhcccccccccccccc
Confidence            3344444455667899999998877777766544 3  4555555 444443333333210                   


Q ss_pred             -CCCCEEEEEcChhHH--HHHHHhCC-CCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097          169 -VSHKVKIKHGLAADS--LKALILNG-EASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       169 -~~~~v~~~~~d~~~~--~~~~~~~~-~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                       ..++..++.+|..+.  ...+...+ +.+..-+++..+.     .......++.+.+....+..++.+
T Consensus       163 ~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         163 IDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             EECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEec
Confidence             135688888888763  33443333 2333445665554     344666778777777655544444

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.00  E-value=2.1  Score=33.19  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH------HHHHHh
Q 024097          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (272)
Q Consensus       118 ~~~~~VLEiG~G~G-~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  189 (272)
                      .+++++|-.|++.+ ..+..+++.+ ..+++|+..+.+++..+.+++.....+   +..++.+|..+.      .....+
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHHH
Confidence            36789999996542 2455555443 236799999999887777766555433   356777887542      111111


Q ss_pred             CCCCCceEEEEEcC
Q 024097          190 NGEASSYDFAFVDA  203 (272)
Q Consensus       190 ~~~~~~fDlV~~d~  203 (272)
                      .  .+..|+++...
T Consensus        83 ~--~g~iDilVnna   94 (256)
T d1ulua_          83 A--FGGLDYLVHAI   94 (256)
T ss_dssp             H--HSSEEEEEECC
T ss_pred             h--cCCceEEEecc
Confidence            1  26799888654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=1.4  Score=34.53  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~  193 (272)
                      +++.+|-.|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+.......++.++.+|..+.  ...+.+.-  ..
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4678888886654 677777665 347899999999998887777665443345788999997652  11111100  12


Q ss_pred             CceEEEEEcCC
Q 024097          194 SSYDFAFVDAE  204 (272)
Q Consensus       194 ~~fDlV~~d~~  204 (272)
                      +..|+++.++.
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            68999887654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.61  E-value=1.1  Score=35.53  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHH--HHHHHhCC--C
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      +++++|-.|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+...+.. .++.++.+|..+.  ...+.+.-  .
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5778887786655 666666654 24679999999999999888888877653 4789999987652  11111100  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++.++
T Consensus        82 ~G~iDilVnnA   92 (274)
T d1xhla_          82 FGKIDILVNNA   92 (274)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCceEEEeec
Confidence            26789998764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.53  E-value=2.8  Score=30.71  Aligned_cols=74  Identities=15%  Similarity=0.157  Sum_probs=42.5

Q ss_pred             EEEEEcCcc-CHHHHHHHHHCCCCcEEEEE-eCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097          122 RCIEVGVYT-GYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (272)
Q Consensus       122 ~VLEiG~G~-G~~~~~la~~~~~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV  199 (272)
                      +|.=||||. |..-.......+ +.+++++ |.+++..+..   .++.+.....++ ..|..+.+.       +...|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~~ll~-------~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAF---ATANNYPESTKI-HGSYESLLE-------DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHH---HHHTTCCTTCEE-ESSHHHHHH-------CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccc---hhccccccceee-cCcHHHhhh-------cccccee
Confidence            677799985 332222334444 6788865 8887654333   334455443343 355655544       3578999


Q ss_pred             EEcCCccc
Q 024097          200 FVDAEKRM  207 (272)
Q Consensus       200 ~~d~~~~~  207 (272)
                      ++..+...
T Consensus        71 ~I~tp~~~   78 (184)
T d1ydwa1          71 YVPLPTSL   78 (184)
T ss_dssp             EECCCGGG
T ss_pred             eecccchh
Confidence            98765443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.53  E-value=2  Score=33.45  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--H----HHHHhCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~~  191 (272)
                      .++.+|-.|++. ..+..+++.+. .+++|+.++.+++.++.+.+.++..+  .++.++.+|..+.  .    ....+. 
T Consensus         9 enKvalITGas~-GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAGR-GIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTTS-HHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            567788778654 57777777653 46799999999999988888886654  3688999988652  1    222111 


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                       .+..|+++.++
T Consensus        85 -~g~iDilvnna   95 (251)
T d2c07a1          85 -HKNVDILVNNA   95 (251)
T ss_dssp             -CSCCCEEEECC
T ss_pred             -cCCceeeeecc
Confidence             36899888754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=1.2  Score=34.72  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcCccC-HHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHh--CC
Q 024097          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALIL--NG  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G-~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~--~~  191 (272)
                      ..+++||-.|+++| ..+..+++.+ ..+.+|+.++.+++..+.+++.....+.   ......|..+..  .....  ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   79 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAELGK   79 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHHhhh
Confidence            46789998887652 2333333333 2368999999998888877776665543   344444443321  11110  11


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                      ..+..|.++...
T Consensus        80 ~~~~~d~~v~~a   91 (258)
T d1qsga_          80 VWPKFDGFVHSI   91 (258)
T ss_dssp             TCSSEEEEEECC
T ss_pred             cccccceEEEee
Confidence            246788887653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.20  E-value=2.9  Score=32.49  Aligned_cols=81  Identities=19%  Similarity=0.142  Sum_probs=53.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHH-HHhCCCCCEEEEEcChhHH------HHHHHh
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIKHGLAADS------LKALIL  189 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~------~~~~~~  189 (272)
                      .+++++|-.|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+ +..+  .++.++.+|..+.      .....+
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35788898887655 566666554 24689999999998876665544 3334  3588888987642      122111


Q ss_pred             CCCCCceEEEEEcC
Q 024097          190 NGEASSYDFAFVDA  203 (272)
Q Consensus       190 ~~~~~~fDlV~~d~  203 (272)
                      .  -+..|+++.++
T Consensus        80 ~--~g~iDiLVnnA   91 (251)
T d1vl8a_          80 K--FGKLDTVVNAA   91 (251)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--cCCCCEEEECC
Confidence            1  26799998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=88.15  E-value=1.5  Score=34.49  Aligned_cols=83  Identities=19%  Similarity=0.240  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++++|-.|.+.| .+..+++.+ ..+++|+.+|.+++.++.+.+.++..+  .++..+.+|..+.  ...+.+.  ..
T Consensus         3 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788898886554 566666554 246899999999999998888887655  3588899987642  1111110  01


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++.++
T Consensus        80 ~g~iDilVnna   90 (260)
T d1zema1          80 FGKIDFLFNNA   90 (260)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCeehhhh
Confidence            26799988654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.74  E-value=4.9  Score=31.06  Aligned_cols=63  Identities=19%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC----CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL----PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  182 (272)
                      .++.+|--|++.| .+..+++.+    ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+
T Consensus         5 ~gKvalITGas~G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRG-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSH-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            3445555565554 566666554    34679999999999988887777665555567777777654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.60  E-value=1.9  Score=28.45  Aligned_cols=76  Identities=20%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             cCCCEEEEEc-CccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVG-VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG-~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      ...++|.=|| ||+|.++++..-.- .+.+|+|.|......  . +.+...|    +.+..+...+.+         ...
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~~~~~~--~-~~L~~~G----i~v~~g~~~~~i---------~~~   68 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDIADGVV--T-QRLAQAG----AKIYIGHAEEHI---------EGA   68 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEESCCSHH--H-HHHHHTT----CEEEESCCGGGG---------TTC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeCCCChh--h-hHHHHCC----CeEEECCccccC---------CCC
Confidence            3457888887 56888775432221 267999999875322  2 2333445    556666555433         356


Q ss_pred             EEEEEcCCc-cchHH
Q 024097          197 DFAFVDAEK-RMYQE  210 (272)
Q Consensus       197 DlV~~d~~~-~~~~~  210 (272)
                      |+|+..... .+.++
T Consensus        69 d~vV~S~AI~~~npe   83 (96)
T d1p3da1          69 SVVVVSSAIKDDNPE   83 (96)
T ss_dssp             SEEEECTTSCTTCHH
T ss_pred             CEEEECCCcCCCCHH
Confidence            888877653 33434

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.04  E-value=1.3  Score=34.94  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHH--HHHHHhCC--
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~~~~--  191 (272)
                      .+++++|-.|++. ..+..+++.+ ..+++|+.++.+++.++.+.+.++..+.. .++.++.+|..+.  ...+.+.-  
T Consensus         3 L~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            4578888777654 4666666655 24679999999999999888888776653 4688999987642  11111100  


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                      ..+..|+++.++
T Consensus        82 ~~g~iDilvnnA   93 (272)
T d1xkqa_          82 QFGKIDVLVNNA   93 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCceEEEeCC
Confidence            126789988764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=86.93  E-value=1.8  Score=31.64  Aligned_cols=93  Identities=16%  Similarity=0.063  Sum_probs=51.2

Q ss_pred             ccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEc-CCcc
Q 024097          129 YTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD-AEKR  206 (272)
Q Consensus       129 G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d-~~~~  206 (272)
                      |.|..+..+++.+- .+.+|++.|.+++..+...+............. ..+..+....+      ...+.++.. ....
T Consensus         8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~   80 (178)
T d1pgja2           8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL------KKPRKALILVQAGA   80 (178)
T ss_dssp             CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB------CSSCEEEECCCCSH
T ss_pred             eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc------ccceEEEEeecCcc
Confidence            44667777776652 246899999999877666554322222222222 22232333332      233344333 3333


Q ss_pred             chHHHHHHHHccCCCCcEEEEe
Q 024097          207 MYQEYFELLLQLIRVGGIIVID  228 (272)
Q Consensus       207 ~~~~~l~~~~~lLkpgG~lvi~  228 (272)
                      .....+..+...+++|.+++-.
T Consensus        81 ~~~~~~~~~~~~~~~~~iii~~  102 (178)
T d1pgja2          81 ATDSTIEQLKKVFEKGDILVDT  102 (178)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEC
T ss_pred             hhhhhhhhhhhhccccceeccc
Confidence            4455677788888998877653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.92  E-value=0.61  Score=37.99  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fD  197 (272)
                      ++||=+| |+|..+.++++.+ ..+.+|+++|.............+.... .+++++++|..+.  +.....   ...+|
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~---~~~~d   75 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILH---DHAID   75 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHH---HTTCS
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHh---ccCCC
Confidence            4678776 7999999988876 3356899998532111111111221111 3689999998763  222211   24689


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      .||.-+.
T Consensus        76 ~ViHlAa   82 (338)
T d1udca_          76 TVIHFAG   82 (338)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9986543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.82  E-value=3.5  Score=32.29  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCC-hhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--G  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~  191 (272)
                      .+++++|-.|+..| .+..+++.+ ..+++|+.++.+ ++.++.+.+.++..+.  ++.++.+|..+.  ...+.++  .
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            46788887777554 566666655 236799999987 4566666666766653  588888887652  1111110  0


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                      ..+..|+++...
T Consensus        93 ~~g~idilV~na  104 (272)
T d1g0oa_          93 IFGKLDIVCSNS  104 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCcccccc
Confidence            126789888654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.77  E-value=2.4  Score=33.11  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .+++++|-.|.+ +..+..+++.+ ..+++|+.++.+++.++.+.+.++..+  .++.++.+|..+.  ...+.+.-  .
T Consensus         9 L~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367788866654 55777777665 346899999999999988888887765  3688899997652  11111100  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++..+
T Consensus        86 ~g~iDilvnnA   96 (255)
T d1fmca_          86 LGKVDILVNNA   96 (255)
T ss_dssp             HSSCCEEEECC
T ss_pred             cCCCCEeeeCC
Confidence            26799888764

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=86.65  E-value=0.78  Score=36.65  Aligned_cols=83  Identities=20%  Similarity=0.270  Sum_probs=56.3

Q ss_pred             HCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHH
Q 024097          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLL  216 (272)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~  216 (272)
                      .+.+.-+++.+|..|+-.+..++++.   -..++++...|..+.+..+...  .+.--+|++|.+   +.++....+.+.
T Consensus       100 llR~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP--~~rRgLVLIDPpYE~k~ey~~v~~~l~  174 (271)
T d2oo3a1         100 QLRSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSYERKEEYKEIPYAIK  174 (271)
T ss_dssp             HSCTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred             hCCCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCC--CCCceEEEecCCcCCHHHHHHHHHHHH
Confidence            34456799999999998887776652   2357999999999987665432  244569999987   344555554444


Q ss_pred             ccCC--CCcEEEE
Q 024097          217 QLIR--VGGIIVI  227 (272)
Q Consensus       217 ~lLk--pgG~lvi  227 (272)
                      +.++  |.|++++
T Consensus       175 ~a~kr~~~g~~~i  187 (271)
T d2oo3a1         175 NAYSKFSTGLYCV  187 (271)
T ss_dssp             HHHHHCTTSEEEE
T ss_pred             HHHHhCCCceEEE
Confidence            4443  5666654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=86.44  E-value=2  Score=30.41  Aligned_cols=36  Identities=17%  Similarity=0.111  Sum_probs=27.7

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSL  157 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~  157 (272)
                      ++|.=|| |.|..+..+++.+. .+..|+++|.++...
T Consensus        10 ~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2          10 HKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            5788898 57888888888764 346899999987643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=86.26  E-value=0.22  Score=36.14  Aligned_cols=92  Identities=10%  Similarity=-0.001  Sum_probs=54.9

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCC--EEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      ++|+=||+|.  .+..++..+. .+..|+.++.+++..+..    ...+....  ......+..+   .      ...+|
T Consensus         1 MkI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~------~~~~D   65 (167)
T d1ks9a2           1 MKITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPD---F------LATSD   65 (167)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHH---H------HHTCS
T ss_pred             CEEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhh----ccccCCccccccccccchhh---h------hcccc
Confidence            4788898864  3333333321 246899999987533211    11111111  1122222222   1      14789


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI  227 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi  227 (272)
                      +||+..........++.+.+++.++..++.
T Consensus        66 ~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          66 LLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             EEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             eEEEeecccchHHHHHhhccccCcccEEee
Confidence            999988877888899999999999886665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.20  E-value=2.1  Score=33.37  Aligned_cols=76  Identities=14%  Similarity=0.109  Sum_probs=52.6

Q ss_pred             EEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH------HHHHHhCCCCCc
Q 024097          123 CIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNGEASS  195 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~~~~~  195 (272)
                      +|-.|++ +..+..+++.+ ..+++|+.+|.+++.++.+.+.++..+  .++.++.+|..+.      .....+.  -+.
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~   78 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKT--LGG   78 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH--TTC
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH--hCC
Confidence            4656755 55677777665 346799999999999988888887765  3688899998652      1222111  368


Q ss_pred             eEEEEEcC
Q 024097          196 YDFAFVDA  203 (272)
Q Consensus       196 fDlV~~d~  203 (272)
                      .|+++.++
T Consensus        79 iDilVnnA   86 (255)
T d1gega_          79 FDVIVNNA   86 (255)
T ss_dssp             CCEEEECC
T ss_pred             ccEEEecc
Confidence            99998764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.09  E-value=2.6  Score=32.79  Aligned_cols=81  Identities=9%  Similarity=0.063  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++++|-.|++. ..+..+++.+ ..+++|+.+|.+++.++.+.+.+   +  .+..++.+|..+.  ...+.+.  ..
T Consensus         4 L~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGAS-GVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            4678888777554 4666666655 24679999999998776665544   2  3577888887542  1111110  01


Q ss_pred             CCceEEEEEcCC
Q 024097          193 ASSYDFAFVDAE  204 (272)
Q Consensus       193 ~~~fDlV~~d~~  204 (272)
                      .+..|+++.++.
T Consensus        78 ~g~iDilVnnAG   89 (253)
T d1hxha_          78 LGTLNVLVNNAG   89 (253)
T ss_dssp             HCSCCEEEECCC
T ss_pred             hCCCCeEEeccc
Confidence            267899987653

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.05  E-value=1.9  Score=33.77  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHH------HHHHHh
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS------LKALIL  189 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~~~~~~  189 (272)
                      .+++.+|-.|++. ..+..+++.+ ..+++|+.++.+++.++.+.+.+...+.. .++.++.+|..+.      ......
T Consensus         3 l~gKvalVTGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSN-GIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            3567788777654 4677776665 34789999999999998888888776653 4689999998542      122111


Q ss_pred             CCCCCceEEEEEcC
Q 024097          190 NGEASSYDFAFVDA  203 (272)
Q Consensus       190 ~~~~~~fDlV~~d~  203 (272)
                      .  .+..|+++.++
T Consensus        82 ~--~g~iDilvnnA   93 (264)
T d1spxa_          82 K--FGKLDILVNNA   93 (264)
T ss_dssp             H--HSCCCEEEECC
T ss_pred             H--hCCCCEeeccc
Confidence            1  26789888654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=85.77  E-value=1.6  Score=34.43  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=54.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~  192 (272)
                      .+++.+|-.|++.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+.   -..++.++.+|..+.  ...+.+.  ..
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---CCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788998886655 666666665 346799999999988877666553   334688888887642  1211110  01


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++..+
T Consensus        80 ~g~iD~lVnnA   90 (268)
T d2bgka1          80 HGKLDIMFGNV   90 (268)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCcceecccc
Confidence            26889998654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.29  E-value=2.4  Score=32.85  Aligned_cols=77  Identities=16%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH------HHHHHhCC
Q 024097          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNG  191 (272)
Q Consensus       119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  191 (272)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+.     .+...+.+|..+.      .....+. 
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            5678887776654 566666655 246799999999988876665552     2577888887642      1222221 


Q ss_pred             CCCceEEEEEcC
Q 024097          192 EASSYDFAFVDA  203 (272)
Q Consensus       192 ~~~~fDlV~~d~  203 (272)
                       .+..|+++.++
T Consensus        76 -~g~iDilVnnA   86 (243)
T d1q7ba_          76 -FGEVDILVNNA   86 (243)
T ss_dssp             -TCSCSEEEECC
T ss_pred             -cCCcceehhhh
Confidence             36899888664

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.83  E-value=5.2  Score=29.53  Aligned_cols=70  Identities=14%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCCCCce
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASSY  196 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~f  196 (272)
                      .++|+=+| |+|..+..+++.+ ..+.+|+++..++..+.        .....+++++.+|..+..  ....     ...
T Consensus         3 ~kkIlV~G-atG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~--------~~~~~~~~~~~gD~~d~~~l~~al-----~~~   68 (205)
T d1hdoa_           3 VKKIAIFG-ATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP--------SEGPRPAHVVVGDVLQAADVDKTV-----AGQ   68 (205)
T ss_dssp             CCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCGGGSC--------SSSCCCSEEEESCTTSHHHHHHHH-----TTC
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEEcChhhcc--------cccccccccccccccchhhHHHHh-----cCC
Confidence            46888665 6888888877643 34678999998876431        112245899999987742  2221     356


Q ss_pred             EEEEEcC
Q 024097          197 DFAFVDA  203 (272)
Q Consensus       197 DlV~~d~  203 (272)
                      |.||...
T Consensus        69 d~vi~~~   75 (205)
T d1hdoa_          69 DAVIVLL   75 (205)
T ss_dssp             SEEEECC
T ss_pred             CEEEEEe
Confidence            8888643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.29  E-value=0.93  Score=35.30  Aligned_cols=79  Identities=11%  Similarity=0.087  Sum_probs=51.0

Q ss_pred             CEEEEEcCccCHHHHHHHHHC----CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--H----HHHHhC
Q 024097          121 QRCIEVGVYTGYSSLAIALVL----PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILN  190 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~  190 (272)
                      ++||-.|+..| .+..+++.+    ..+.+|+.++.+++.++.+++..+. +  .++.++..|..+.  .    ..+...
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H--SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C--TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-C--CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            57887776555 777777654    3467999999999887776654443 2  3699999987542  1    211110


Q ss_pred             CCCCceEEEEEcC
Q 024097          191 GEASSYDFAFVDA  203 (272)
Q Consensus       191 ~~~~~fDlV~~d~  203 (272)
                      ...+..|+++.++
T Consensus        79 ~~~~~iDiLvnNA   91 (248)
T d1snya_          79 TKDQGLNVLFNNA   91 (248)
T ss_dssp             HGGGCCSEEEECC
T ss_pred             hhcCCcceEEeec
Confidence            1136789998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.21  E-value=0.43  Score=31.39  Aligned_cols=82  Identities=12%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (272)
Q Consensus       118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  196 (272)
                      .++++|+=+|.| +|.++..++...  +.+|++.|..+.....  +.     +...+.+..+...+.  .+      ..+
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~--~~-----~~~~~~~~~~~~~~~--~~------~~~   65 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGL--DK-----LPEAVERHTGSLNDE--WL------MAA   65 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTG--GG-----SCTTSCEEESBCCHH--HH------HHC
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhH--HH-----Hhhccceeecccchh--hh------ccC
Confidence            357789999886 555554444443  5799999986542111  11     112344555443221  11      468


Q ss_pred             EEEEEcCCccchHHHHHHHH
Q 024097          197 DFAFVDAEKRMYQEYFELLL  216 (272)
Q Consensus       197 DlV~~d~~~~~~~~~l~~~~  216 (272)
                      |+|++....+...+.++.+.
T Consensus        66 d~vi~SPGi~~~~~~~~~a~   85 (93)
T d2jfga1          66 DLIVASPGIALAHPSLSAAA   85 (93)
T ss_dssp             SEEEECTTSCTTSHHHHHHH
T ss_pred             CEEEECCCCCCCCHHHHHHH
Confidence            99999877555445565554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.00  E-value=6.7  Score=30.24  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEE-eCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH------HHHHHh
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  189 (272)
                      ..+++||-.| |++..+..+++.+. .+++|+.+ ..+++..+.+.+.++..+.  ++.++.+|..+.      ......
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            3578888667 55667777776653 35678764 5677778888888877664  588899998642      122111


Q ss_pred             CCCCCceEEEEEcC
Q 024097          190 NGEASSYDFAFVDA  203 (272)
Q Consensus       190 ~~~~~~fDlV~~d~  203 (272)
                      .  .+..|+++..+
T Consensus        81 ~--~g~idilinna   92 (259)
T d1ja9a_          81 H--FGGLDFVMSNS   92 (259)
T ss_dssp             H--HSCEEEEECCC
T ss_pred             H--cCCCcEEEecc
Confidence            1  36799888654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=83.81  E-value=3.4  Score=32.05  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCCC
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEAS  194 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~~  194 (272)
                      ++.+|-.|++ +..+..+++.+ ..+++|+.++.+++.++.+.+.++..+.  ++.++.+|..+.  ...+.+.  ..-+
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            4556766755 44677777665 2467999999999999888888876653  588999987652  1211110  0136


Q ss_pred             ceEEEEEcC
Q 024097          195 SYDFAFVDA  203 (272)
Q Consensus       195 ~fDlV~~d~  203 (272)
                      +.|+++.++
T Consensus        79 ~iDilVnnA   87 (257)
T d2rhca1          79 PVDVLVNNA   87 (257)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEecc
Confidence            899888764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.68  E-value=6.5  Score=29.12  Aligned_cols=103  Identities=8%  Similarity=0.104  Sum_probs=53.2

Q ss_pred             CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHH------------HHHHhCCCCCEEEEEcChhHHHHHH
Q 024097          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKAL  187 (272)
Q Consensus       121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~  187 (272)
                      ++|.=||+|.  .++.+|..+. .+.+|+++|++++.++..++            .+.......+.. ...|..+.+   
T Consensus         1 MkI~ViGlG~--vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~-~~~~~~~~i---   74 (202)
T d1mv8a2           1 MRISIFGLGY--VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS-GTTDFKKAV---   74 (202)
T ss_dssp             CEEEEECCST--THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE-EESCHHHHH---
T ss_pred             CEEEEECCCH--hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc-cCCCHHHHH---
Confidence            3566777763  3333333321 25699999999987765432            111111111122 222222222   


Q ss_pred             HhCCCCCceEEEEEcCCcc----------chHHHHHHH---HccCCCCcEEEEeCCCCCCc
Q 024097          188 ILNGEASSYDFAFVDAEKR----------MYQEYFELL---LQLIRVGGIIVIDNVLWHGK  235 (272)
Q Consensus       188 ~~~~~~~~fDlV~~d~~~~----------~~~~~l~~~---~~lLkpgG~lvi~d~~~~g~  235 (272)
                            ...|++|+.-+.+          ......+.+   .+.++++..+++.....+|.
T Consensus        75 ------~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          75 ------LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             ------HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             ------hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcc
Confidence                  2458888754321          123333333   45566888999987777764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.57  E-value=2  Score=31.44  Aligned_cols=92  Identities=11%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             EEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097          123 CIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (272)
Q Consensus       123 VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~  201 (272)
                      |-=||+  |..+..+++.+- .+.+|+++|.+++..+...+.    +.......-.....+....      -...|.+++
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~------~~~~~~ii~   72 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----EAKGTKVLGAHSLEEMVSK------LKKPRRIIL   72 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT----TTTTSSCEECSSHHHHHHH------BCSSCEEEE
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh----ccccccccchhhhhhhhhh------hcccceEEE
Confidence            444555  667777776653 246899999999877655432    2211111111222222222      244566665


Q ss_pred             cCC-ccchHHHHHHHHccCCCCcEEE
Q 024097          202 DAE-KRMYQEYFELLLQLIRVGGIIV  226 (272)
Q Consensus       202 d~~-~~~~~~~l~~~~~lLkpgG~lv  226 (272)
                      ... .......++.+...+++|-+++
T Consensus        73 ~~~~~~~v~~v~~~l~~~~~~g~iii   98 (176)
T d2pgda2          73 LVKAGQAVDNFIEKLVPLLDIGDIII   98 (176)
T ss_dssp             CSCTTHHHHHHHHHHHHHCCTTCEEE
T ss_pred             ecCchHHHHHHHHHHHhccccCcEEE
Confidence            433 3445556777777788766544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.34  E-value=2  Score=34.13  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=46.1

Q ss_pred             EEEEEcCccCHHHHHHHHHC-CCCcEEEEEeC-ChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceE
Q 024097          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fD  197 (272)
                      +||=.| |+|..+..+.+.+ ..+.+|+++|. +.....   .++.......+++++.+|..+.  +....+   ..++|
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~---~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~---~~~~d   74 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGAT---DNLHWLSSLGNFEFVHGDIRNKNDVTRLIT---KYMPD   74 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH---HHHHHHHTTCCCEEEECCTTCHHHHHHHHH---HHCCS
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccch---hHHHHhhccCCcEEEEcccCCHHHHHHHHH---hcCCc
Confidence            677555 7899998887765 34679999983 332221   1222122234699999998752  232221   23679


Q ss_pred             EEEEcCC
Q 024097          198 FAFVDAE  204 (272)
Q Consensus       198 lV~~d~~  204 (272)
                      .||.-+.
T Consensus        75 ~Vih~aa   81 (338)
T d1orra_          75 SCFHLAG   81 (338)
T ss_dssp             EEEECCC
T ss_pred             eEEeecc
Confidence            9987654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.41  E-value=0.94  Score=33.88  Aligned_cols=38  Identities=13%  Similarity=0.286  Sum_probs=28.7

Q ss_pred             EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHH
Q 024097          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAK  161 (272)
Q Consensus       122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (272)
                      +|.=||  .|+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViG--lG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAG--SGYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEEC--CSHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEEC--CChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            566676  47777777766666789999999999876554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.38  E-value=5.1  Score=31.87  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhC---CCCCEEEEEcChhHH--HHHHHhCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADS--LKALILNG  191 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~~~~  191 (272)
                      .+++.+|-.|++.| .+..+++.+ ..+++|+.++.+++.++.+.+.+....   ...++.++.+|..+.  ...+.+.-
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46788998886655 666666654 346899999999998877776665432   234688899987642  12211100


Q ss_pred             --CCCceEEEEEcCC
Q 024097          192 --EASSYDFAFVDAE  204 (272)
Q Consensus       192 --~~~~fDlV~~d~~  204 (272)
                        ..+..|+++.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              1267899887643

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.32  E-value=0.25  Score=37.03  Aligned_cols=93  Identities=18%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             CCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          120 AQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       120 ~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      +.+||-.|.  |.|..++.+++.+  +++|+++..+++..+.+++    .|..   .++.-+-.+....+    ....+|
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad---~vi~~~~~~~~~~l----~~~~~~   98 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGAS---RVLPRDEFAESRPL----EKQVWA   98 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEE---EEEEGGGSSSCCSS----CCCCEE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hccc---cccccccHHHHHHH----HhhcCC
Confidence            357876653  3667888889887  4899999999998776654    3432   22222111111111    135678


Q ss_pred             EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097          198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  229 (272)
Q Consensus       198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d  229 (272)
                      .|+ |..-.   ..++...+.|+++|.++.-.
T Consensus        99 ~vv-D~Vgg---~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          99 GAI-DTVGD---KVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEE-ESSCH---HHHHHHHHTEEEEEEEEECC
T ss_pred             eeE-EEcch---HHHHHHHHHhccccceEeec
Confidence            765 54432   46888999999999999853

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=81.67  E-value=2.1  Score=33.51  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH------HHHHhC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------KALILN  190 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~  190 (272)
                      .+++++|-.|+.. ..+..+++.+ ..+.+|+.++.+++.++.+.+.++..+.  ++.++.+|..+.-      ....+.
T Consensus         4 L~gK~alITGas~-GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           4 LKGTTALVTGGSK-GIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CTTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            3678999888764 4666666554 3468999999999998888888877663  5788888876531      122111


Q ss_pred             CCCCceEEEEEcC
Q 024097          191 GEASSYDFAFVDA  203 (272)
Q Consensus       191 ~~~~~fDlV~~d~  203 (272)
                      . .+..|+++..+
T Consensus        81 ~-~g~idilinna   92 (258)
T d1ae1a_          81 F-DGKLNILVNNA   92 (258)
T ss_dssp             T-TSCCCEEEECC
T ss_pred             h-CCCcEEEeccc
Confidence            1 25788887654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.53  E-value=1.2  Score=36.13  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEAS  194 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~  194 (272)
                      .++++||-.| |+|..+.++++.+ ..+.+|+++|.++.....   .++.....++++++.+|..+.  +.....   ..
T Consensus         6 ~~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~---~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~---~~   78 (356)
T d1rkxa_           6 WQGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS---LFETARVADGMQSEIGDIRDQNKLLESIR---EF   78 (356)
T ss_dssp             HTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC---HHHHTTTTTTSEEEECCTTCHHHHHHHHH---HH
T ss_pred             hCCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHH---HHhhhhcccCCeEEEeeccChHhhhhhhh---hc
Confidence            4678999887 6799998888775 235689999987643221   223333455799999998653  222211   24


Q ss_pred             ceEEEEEcCC
Q 024097          195 SYDFAFVDAE  204 (272)
Q Consensus       195 ~fDlV~~d~~  204 (272)
                      .+|.|+..+.
T Consensus        79 ~~~~v~~~aa   88 (356)
T d1rkxa_          79 QPEIVFHMAA   88 (356)
T ss_dssp             CCSEEEECCS
T ss_pred             hhhhhhhhhc
Confidence            5677776544

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.40  E-value=2.2  Score=34.31  Aligned_cols=81  Identities=14%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCCh----hHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDA----RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  192 (272)
                      ..+++||-.| |+|..+.++++.+ ..+.+|+++|...    ..+...+........ .+++++.+|..+.......   
T Consensus        14 ~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~~~~~---   88 (341)
T d1sb8a_          14 AQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-SNFKFIQGDIRNLDDCNNA---   88 (341)
T ss_dssp             HSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-TTEEEEECCTTSHHHHHHH---
T ss_pred             CCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-CCeeEEeeccccccccccc---
Confidence            3677899776 8999999988876 2356999999622    222223222221222 3589999999874322111   


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      ....+.|+..+
T Consensus        89 ~~~~~~v~~~~   99 (341)
T d1sb8a_          89 CAGVDYVLHQA   99 (341)
T ss_dssp             HTTCSEEEECC
T ss_pred             ccccccccccc
Confidence            24456666543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=81.03  E-value=9.2  Score=29.15  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      ..++++|-.|++. ..+..+++.+ ..+.+|+.++.+.+.++..   .++  +..++.++++|..+.  +..+.+.-  .
T Consensus         3 l~gK~alItGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~--~~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           3 LSGKTILVTGAAS-GIGRAALDLFAREGASLVAVDREERLLAEA---VAA--LEAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHT--CCSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHH--cCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678889888765 4666776665 3468999999998766433   332  335688899987642  22211100  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .++.|+++.++
T Consensus        77 ~g~iDiLinnA   87 (241)
T d2a4ka1          77 FGRLHGVAHFA   87 (241)
T ss_dssp             HSCCCEEEEGG
T ss_pred             hCCccEecccc
Confidence            26799988754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.99  E-value=4.3  Score=31.38  Aligned_cols=82  Identities=18%  Similarity=0.078  Sum_probs=53.7

Q ss_pred             cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (272)
Q Consensus       118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~  192 (272)
                      .+++++|-.|.+ +..+..+++.+ ..+++|+.++.+++.++.+.+.+.   ...++.++.+|..+.  ...+.+.-  .
T Consensus         4 L~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467788877754 45666666654 246899999999988877766653   345799999998652  11111100  1


Q ss_pred             CCceEEEEEcC
Q 024097          193 ASSYDFAFVDA  203 (272)
Q Consensus       193 ~~~fDlV~~d~  203 (272)
                      .+..|+++.++
T Consensus        80 ~G~iDiLVnnA   90 (251)
T d1zk4a1          80 FGPVSTLVNNA   90 (251)
T ss_dssp             HSSCCEEEECC
T ss_pred             hCCceEEEecc
Confidence            26899888654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.70  E-value=1.9  Score=35.55  Aligned_cols=78  Identities=17%  Similarity=0.148  Sum_probs=45.8

Q ss_pred             CCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhH-----------------HHHHHHHHHHhCCCCCEEEEEcChh
Q 024097          120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARS-----------------LEVAKKYYERAGVSHKVKIKHGLAA  181 (272)
Q Consensus       120 ~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~-----------------~~~a~~~~~~~~~~~~v~~~~~d~~  181 (272)
                      +++||-.| |+|..+.++++.+ ..+.+|+++|.-...                 .+... .+.... ..+++++.+|..
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS-RWKALT-GKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHH-HHHHHH-CCCCEEEESCTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHH-HHHhhc-CCCcEEEEccCC
Confidence            47898777 5999998888776 335789999832111                 11111 111111 236899999987


Q ss_pred             HH--HHHHHhCCCCCceEEEEEcC
Q 024097          182 DS--LKALILNGEASSYDFAFVDA  203 (272)
Q Consensus       182 ~~--~~~~~~~~~~~~fDlV~~d~  203 (272)
                      +.  +.....   ...+|.|+.-+
T Consensus        78 d~~~l~~~~~---~~~~d~ViHlA   98 (393)
T d1i24a_          78 DFEFLAESFK---SFEPDSVVHFG   98 (393)
T ss_dssp             SHHHHHHHHH---HHCCSEEEECC
T ss_pred             CHHHHHHHHH---hhcchheeccc
Confidence            52  233221   23689998654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=80.61  E-value=6.4  Score=28.55  Aligned_cols=74  Identities=16%  Similarity=-0.007  Sum_probs=41.6

Q ss_pred             CEEEEEcCccCHHH--HHHHHHCCCCcEEEE-EeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097          121 QRCIEVGVYTGYSS--LAIALVLPESGCLVA-CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (272)
Q Consensus       121 ~~VLEiG~G~G~~~--~~la~~~~~~~~v~~-iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  197 (272)
                      .+|.=||||.-...  +...+..+...++++ +|.+++..+...+.+   +.    .....|..+.+.       ....|
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~---~~----~~~~~~~~ell~-------~~~id   69 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---GN----PAVFDSYEELLE-------SGLVD   69 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---SS----CEEESCHHHHHH-------SSCCS
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc---cc----cceeeeeecccc-------ccccc
Confidence            47788898742221  223334443457775 588887655443333   32    123456655554       46789


Q ss_pred             EEEEcCCccch
Q 024097          198 FAFVDAEKRMY  208 (272)
Q Consensus       198 lV~~d~~~~~~  208 (272)
                      +|++..+....
T Consensus        70 ~v~I~tp~~~h   80 (181)
T d1zh8a1          70 AVDLTLPVELN   80 (181)
T ss_dssp             EEEECCCGGGH
T ss_pred             eeecccccccc
Confidence            99987664443